Query 038936
Match_columns 476
No_of_seqs 661 out of 1812
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 07:27:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.4E-44 4.7E-49 349.7 42.8 462 7-475 65-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-40 7E-45 320.5 37.2 427 39-475 66-562 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.1E-31 2.4E-35 239.5 37.3 366 68-475 6-385 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-28 1.4E-32 221.2 39.6 369 5-442 9-386 (388)
5 2gw1_A Mitochondrial precursor 100.0 1.3E-27 4.4E-32 226.6 33.1 442 26-474 6-494 (514)
6 4g26_A Pentatricopeptide repea 100.0 1.2E-28 4.1E-33 228.0 21.1 198 177-374 8-223 (501)
7 4g26_A Pentatricopeptide repea 100.0 3.3E-29 1.1E-33 231.8 15.5 197 142-339 9-223 (501)
8 3fp2_A TPR repeat-containing p 100.0 1.8E-26 6.3E-31 219.9 28.9 434 25-469 24-502 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-24 3.9E-29 202.7 33.3 313 123-472 26-372 (450)
10 2gw1_A Mitochondrial precursor 99.9 5.5E-25 1.9E-29 208.5 31.4 408 61-475 6-461 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 1.6E-24 5.6E-29 201.7 32.6 357 79-463 10-415 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.3E-24 1.1E-28 204.3 33.0 412 3-423 33-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.1E-22 1.1E-26 180.3 33.0 324 123-474 3-351 (359)
14 3hym_B Cell division cycle pro 99.9 1.3E-21 4.5E-26 174.0 26.4 281 191-474 19-315 (330)
15 2xm6_A Protein corresponding t 99.9 6.3E-20 2.2E-24 172.1 37.4 373 46-472 27-449 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 4.1E-20 1.4E-24 166.4 31.3 323 91-440 2-351 (359)
17 2xm6_A Protein corresponding t 99.9 4.7E-19 1.6E-23 166.2 35.1 359 14-423 26-429 (490)
18 2ooe_A Cleavage stimulation fa 99.9 1.1E-18 3.8E-23 165.4 36.9 410 23-461 10-495 (530)
19 1xi4_A Clathrin heavy chain; a 99.9 1.1E-17 3.7E-22 164.6 43.2 406 2-453 992-1440(1630)
20 1b89_A Protein (clathrin heavy 99.9 5E-20 1.7E-24 162.5 24.2 281 7-318 15-305 (449)
21 3hym_B Cell division cycle pro 99.9 3.1E-19 1.1E-23 158.6 29.2 287 122-446 21-322 (330)
22 1fch_A Peroxisomal targeting s 99.9 9.2E-20 3.1E-24 164.8 25.2 282 104-457 37-358 (368)
23 3mkr_A Coatomer subunit epsilo 99.9 1.1E-18 3.6E-23 151.1 28.4 258 201-468 6-274 (291)
24 2ooe_A Cleavage stimulation fa 99.8 1.7E-17 5.8E-22 157.2 37.5 392 5-423 22-489 (530)
25 1xi4_A Clathrin heavy chain; a 99.8 1.3E-16 4.5E-21 157.1 43.7 367 60-474 984-1366(1630)
26 1b89_A Protein (clathrin heavy 99.8 1.3E-19 4.5E-24 159.8 20.5 278 38-348 15-304 (449)
27 1fch_A Peroxisomal targeting s 99.8 2.2E-19 7.4E-24 162.3 21.0 265 206-474 37-341 (368)
28 4g1t_A Interferon-induced prot 99.8 2.7E-18 9.4E-23 160.6 28.8 379 60-471 50-472 (472)
29 4eqf_A PEX5-related protein; a 99.8 4.8E-19 1.6E-23 159.8 20.0 243 228-474 68-338 (365)
30 4eqf_A PEX5-related protein; a 99.8 4.4E-18 1.5E-22 153.5 25.2 194 191-388 96-308 (365)
31 3cv0_A Peroxisome targeting si 99.8 1.2E-18 4.1E-23 154.6 19.0 276 159-461 21-318 (327)
32 3cv0_A Peroxisome targeting si 99.8 2.4E-17 8.4E-22 146.1 26.2 275 122-423 20-312 (327)
33 4g1t_A Interferon-induced prot 99.8 4.7E-16 1.6E-20 145.4 34.7 368 23-423 48-456 (472)
34 3mkr_A Coatomer subunit epsilo 99.8 8.7E-18 3E-22 145.4 19.7 245 196-452 36-288 (291)
35 3uq3_A Heat shock protein STI1 99.8 1.4E-17 4.8E-22 142.3 18.5 234 228-473 8-257 (258)
36 3u4t_A TPR repeat-containing p 99.8 3.5E-17 1.2E-21 141.0 21.0 243 197-474 6-266 (272)
37 2h6f_A Protein farnesyltransfe 99.7 3E-16 1E-20 140.2 21.9 244 226-474 98-364 (382)
38 3e4b_A ALGK; tetratricopeptide 99.7 7.4E-16 2.5E-20 142.2 23.2 373 32-457 9-420 (452)
39 3e4b_A ALGK; tetratricopeptide 99.7 8.4E-16 2.9E-20 141.8 23.2 370 4-388 12-419 (452)
40 1ouv_A Conserved hypothetical 99.7 3.9E-15 1.3E-19 128.2 23.7 228 194-466 6-259 (273)
41 2pl2_A Hypothetical conserved 99.7 6.8E-16 2.3E-20 127.6 18.1 179 293-474 3-196 (217)
42 2q7f_A YRRB protein; TPR, prot 99.7 2.8E-16 9.7E-21 132.8 16.1 211 227-473 25-237 (243)
43 2ho1_A Type 4 fimbrial biogene 99.7 3.1E-15 1.1E-19 127.2 20.9 210 225-469 37-249 (252)
44 2pl2_A Hypothetical conserved 99.7 1.2E-15 4.3E-20 126.0 17.5 91 328-422 120-210 (217)
45 3u4t_A TPR repeat-containing p 99.7 1.7E-14 5.8E-19 124.1 24.7 230 159-423 3-247 (272)
46 2vq2_A PILW, putative fimbrial 99.7 4.8E-15 1.6E-19 123.5 20.5 211 225-470 8-223 (225)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.8E-15 2E-19 127.3 21.1 198 263-466 46-252 (275)
48 4e6h_A MRNA 3'-END-processing 99.7 2.2E-12 7.4E-17 123.1 40.4 417 44-465 50-577 (679)
49 3uq3_A Heat shock protein STI1 99.7 6.3E-15 2.2E-19 125.7 20.9 208 169-422 15-232 (258)
50 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-16 4.9E-21 152.2 10.6 128 190-317 123-258 (1134)
51 3spa_A Mtrpol, DNA-directed RN 99.7 7.6E-17 2.6E-21 154.0 6.6 122 295-417 127-256 (1134)
52 3sf4_A G-protein-signaling mod 99.7 1.6E-15 5.4E-20 138.8 15.2 289 157-473 7-357 (406)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.4E-14 8.3E-19 123.4 21.3 214 136-354 18-243 (275)
54 4a1s_A PINS, partner of inscut 99.6 3.6E-15 1.2E-19 136.7 16.4 272 162-461 51-375 (411)
55 2h6f_A Protein farnesyltransfe 99.6 9.4E-14 3.2E-18 124.1 23.2 241 194-440 97-364 (382)
56 2ho1_A Type 4 fimbrial biogene 99.6 8.2E-14 2.8E-18 118.3 21.7 194 194-389 37-237 (252)
57 1ouv_A Conserved hypothetical 99.6 3.6E-13 1.2E-17 115.8 25.5 220 158-389 5-250 (273)
58 3sf4_A G-protein-signaling mod 99.6 1.5E-14 5E-19 132.4 17.5 262 127-388 13-334 (406)
59 3ro2_A PINS homolog, G-protein 99.6 1.3E-14 4.4E-19 129.0 16.5 273 162-462 8-336 (338)
60 3ulq_A Response regulator aspa 99.6 5.8E-13 2E-17 120.7 27.4 232 200-460 109-370 (383)
61 3vtx_A MAMA; tetratricopeptide 99.6 1.6E-14 5.4E-19 116.2 14.7 167 294-463 4-175 (184)
62 4abn_A Tetratricopeptide repea 99.6 2.3E-14 8E-19 133.1 16.9 194 276-474 84-303 (474)
63 2vq2_A PILW, putative fimbrial 99.6 1.9E-13 6.4E-18 113.8 20.5 198 191-423 5-208 (225)
64 2q7f_A YRRB protein; TPR, prot 99.6 3.1E-14 1.1E-18 120.2 15.9 195 192-389 21-221 (243)
65 4a1s_A PINS, partner of inscut 99.6 7.4E-14 2.5E-18 128.0 19.2 273 125-423 50-369 (411)
66 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.7E-18 122.9 18.4 273 125-423 7-329 (338)
67 4i17_A Hypothetical protein; T 99.6 1.4E-13 4.8E-18 114.9 17.4 206 258-474 5-225 (228)
68 2ond_A Cleavage stimulation fa 99.6 8E-13 2.7E-17 115.7 22.6 163 297-462 101-274 (308)
69 2ond_A Cleavage stimulation fa 99.6 2.9E-13 1E-17 118.4 19.8 249 211-472 33-306 (308)
70 3nf1_A KLC 1, kinesin light ch 99.5 3.2E-14 1.1E-18 125.0 11.1 247 191-461 24-310 (311)
71 3ulq_A Response regulator aspa 99.5 2.8E-12 9.6E-17 116.1 23.1 224 36-289 22-293 (383)
72 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.4E-17 105.0 18.1 169 295-466 8-181 (186)
73 3q15_A PSP28, response regulat 99.5 1.3E-11 4.3E-16 111.6 26.1 225 234-459 110-366 (378)
74 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.2E-17 105.1 16.8 148 325-475 4-153 (184)
75 4e6h_A MRNA 3'-END-processing 99.5 4.1E-10 1.4E-14 107.6 36.3 405 13-423 50-567 (679)
76 4abn_A Tetratricopeptide repea 99.5 8.2E-13 2.8E-17 122.7 17.0 209 210-423 84-318 (474)
77 3q15_A PSP28, response regulat 99.5 4.8E-11 1.6E-15 107.8 26.3 95 195-289 183-290 (378)
78 3nf1_A KLC 1, kinesin light ch 99.4 9.7E-13 3.3E-17 115.5 12.8 28 124-151 28-55 (311)
79 4i17_A Hypothetical protein; T 99.4 5.3E-12 1.8E-16 105.2 15.7 148 325-474 6-164 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 3.4E-12 1.2E-16 123.2 15.9 168 292-462 6-178 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-12 5.9E-17 125.3 13.0 161 259-423 8-171 (723)
82 3mv2_B Coatomer subunit epsilo 99.4 5.8E-11 2E-15 100.6 20.6 246 201-468 20-292 (310)
83 1hz4_A MALT regulatory protein 99.4 9.4E-11 3.2E-15 105.7 22.9 160 128-288 19-202 (373)
84 1qqe_A Vesicular transport pro 99.4 5.5E-12 1.9E-16 109.3 13.7 225 209-470 32-281 (292)
85 1hz4_A MALT regulatory protein 99.4 1E-09 3.5E-14 98.9 28.5 158 96-253 18-202 (373)
86 4ga2_A E3 SUMO-protein ligase 99.3 9.7E-13 3.3E-17 101.4 6.0 140 332-475 3-146 (150)
87 3qky_A Outer membrane assembly 99.3 7.9E-11 2.7E-15 100.4 18.5 178 294-473 14-242 (261)
88 3edt_B KLC 2, kinesin light ch 99.3 6E-11 2E-15 102.3 15.5 230 206-459 13-282 (283)
89 1qqe_A Vesicular transport pro 99.3 6.1E-11 2.1E-15 102.7 15.3 176 275-465 32-235 (292)
90 3as5_A MAMA; tetratricopeptide 99.3 2.4E-10 8.3E-15 91.5 17.4 163 194-390 8-173 (186)
91 2fo7_A Synthetic consensus TPR 99.3 1.5E-10 5.3E-15 87.2 15.3 132 328-462 3-136 (136)
92 2uy1_A Cleavage stimulation fa 99.3 1.5E-08 5.3E-13 93.9 31.3 368 38-457 6-412 (493)
93 3urz_A Uncharacterized protein 99.3 7E-11 2.4E-15 96.7 14.0 188 265-472 9-199 (208)
94 2pzi_A Probable serine/threoni 99.3 2.9E-11 1E-15 117.4 12.5 192 271-467 402-611 (681)
95 4gco_A Protein STI-1; structur 99.3 1E-10 3.5E-15 86.8 12.4 115 357-473 8-125 (126)
96 3edt_B KLC 2, kinesin light ch 99.2 4.6E-10 1.6E-14 96.7 17.0 129 161-289 45-198 (283)
97 2pzi_A Probable serine/threoni 99.2 4.8E-10 1.7E-14 108.9 17.8 181 236-423 402-602 (681)
98 2vsy_A XCC0866; transferase, g 99.2 3.2E-10 1.1E-14 108.2 16.2 160 308-470 2-169 (568)
99 3qky_A Outer membrane assembly 99.2 3E-09 1E-13 90.5 20.4 209 192-415 13-250 (261)
100 3mv2_B Coatomer subunit epsilo 99.2 5.1E-09 1.7E-13 88.8 20.1 222 232-473 20-265 (310)
101 2r5s_A Uncharacterized protein 99.1 7.1E-10 2.4E-14 88.0 13.3 157 297-457 8-172 (176)
102 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.7E-09 5.9E-14 89.6 16.0 184 262-464 6-219 (225)
103 3dra_A Protein farnesyltransfe 99.1 5.4E-08 1.8E-12 83.4 25.1 162 309-473 124-303 (306)
104 3qou_A Protein YBBN; thioredox 99.1 5.6E-09 1.9E-13 90.0 18.9 160 260-421 117-279 (287)
105 3urz_A Uncharacterized protein 99.1 7.3E-09 2.5E-13 84.6 17.9 128 231-362 60-191 (208)
106 2ifu_A Gamma-SNAP; membrane fu 99.1 1.4E-09 4.8E-14 94.9 14.5 200 237-464 3-229 (307)
107 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-09 1.5E-13 86.2 15.5 183 277-471 3-208 (212)
108 2r5s_A Uncharacterized protein 99.1 3.4E-09 1.2E-13 84.0 14.5 158 263-422 9-169 (176)
109 4ga2_A E3 SUMO-protein ligase 99.1 6.2E-10 2.1E-14 85.5 9.7 141 301-444 3-149 (150)
110 3qou_A Protein YBBN; thioredox 99.1 2E-09 6.7E-14 92.9 13.1 162 292-457 114-283 (287)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.1 5.8E-09 2E-13 85.6 15.3 92 298-390 9-100 (213)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-09 5.6E-14 94.5 12.1 203 171-422 3-220 (307)
113 1hh8_A P67PHOX, NCF-2, neutrop 99.0 8.4E-09 2.9E-13 84.7 15.5 130 329-464 9-156 (213)
114 4f3v_A ESX-1 secretion system 99.0 4.6E-09 1.6E-13 87.8 13.8 138 329-471 105-249 (282)
115 2fo7_A Synthetic consensus TPR 99.0 7.7E-09 2.6E-13 77.7 13.9 128 228-389 4-131 (136)
116 1na0_A Designed protein CTPR3; 99.0 5.6E-09 1.9E-13 77.2 12.4 113 361-475 9-123 (125)
117 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.1E-08 3.8E-13 84.7 15.2 149 327-475 5-196 (225)
118 3u3w_A Transcriptional activat 99.0 4.3E-08 1.5E-12 84.8 19.5 158 301-458 81-266 (293)
119 3rjv_A Putative SEL1 repeat pr 99.0 3E-08 1E-12 81.1 17.4 171 12-189 3-198 (212)
120 2vgx_A Chaperone SYCD; alterna 99.0 1.4E-09 4.8E-14 83.2 8.7 117 348-468 9-128 (148)
121 2qfc_A PLCR protein; TPR, HTH, 99.0 1.4E-08 4.8E-13 87.9 16.0 161 298-458 78-266 (293)
122 2lni_A Stress-induced-phosphop 99.0 5.7E-09 2E-13 78.2 11.9 113 360-474 15-129 (133)
123 2e2e_A Formate-dependent nitri 99.0 5.2E-09 1.8E-13 83.0 12.1 131 337-470 21-156 (177)
124 3gyz_A Chaperone protein IPGC; 99.0 2.2E-09 7.7E-14 81.9 8.9 100 362-463 37-138 (151)
125 1elw_A TPR1-domain of HOP; HOP 98.9 1.4E-08 4.9E-13 74.1 12.3 112 361-474 4-117 (118)
126 2vyi_A SGTA protein; chaperone 98.9 1.4E-08 4.9E-13 75.7 12.3 112 361-474 12-125 (131)
127 3upv_A Heat shock protein STI1 98.9 8.9E-09 3E-13 76.4 10.7 111 362-474 5-123 (126)
128 2uy1_A Cleavage stimulation fa 98.9 1.4E-06 4.7E-11 80.8 27.4 200 177-389 197-412 (493)
129 3sz7_A HSC70 cochaperone (SGT) 98.9 1.2E-08 4E-13 79.8 11.6 110 361-472 11-122 (164)
130 2vsy_A XCC0866; transferase, g 98.9 9.4E-09 3.2E-13 98.1 13.2 134 339-475 2-137 (568)
131 2xcb_A PCRH, regulatory protei 98.9 1.8E-08 6E-13 76.6 11.1 107 363-471 20-128 (142)
132 3gw4_A Uncharacterized protein 98.9 2.3E-08 7.8E-13 81.3 12.2 153 307-459 4-177 (203)
133 2dba_A Smooth muscle cell asso 98.9 6E-08 2E-12 74.1 13.6 111 361-474 28-144 (148)
134 3u3w_A Transcriptional activat 98.8 4.3E-07 1.5E-11 78.5 19.6 144 331-474 80-247 (293)
135 2qfc_A PLCR protein; TPR, HTH, 98.8 2.2E-07 7.5E-12 80.4 17.3 169 227-423 77-263 (293)
136 1a17_A Serine/threonine protei 98.8 9.8E-08 3.4E-12 74.6 13.8 129 327-458 14-146 (166)
137 3dra_A Protein farnesyltransfe 98.8 1.2E-05 4.1E-10 68.9 26.8 209 140-354 50-286 (306)
138 4gco_A Protein STI-1; structur 98.8 7.2E-08 2.4E-12 71.3 11.4 107 327-436 14-122 (126)
139 3q7a_A Farnesyltransferase alp 98.8 5.9E-06 2E-10 71.6 24.9 227 242-473 71-347 (349)
140 4gcn_A Protein STI-1; structur 98.8 3.4E-08 1.2E-12 73.2 9.4 104 364-470 11-123 (127)
141 3gyz_A Chaperone protein IPGC; 98.8 3.5E-08 1.2E-12 75.3 9.4 103 325-430 35-138 (151)
142 3q49_B STIP1 homology and U bo 98.8 7.8E-08 2.7E-12 72.4 11.2 112 359-472 7-125 (137)
143 1p5q_A FKBP52, FK506-binding p 98.8 7.7E-08 2.6E-12 84.8 12.5 149 308-458 126-294 (336)
144 1p5q_A FKBP52, FK506-binding p 98.8 2.5E-08 8.6E-13 87.9 9.1 140 273-416 126-283 (336)
145 3dss_A Geranylgeranyl transfer 98.7 3E-06 1E-10 73.1 21.1 193 276-473 90-319 (331)
146 2c2l_A CHIP, carboxy terminus 98.7 1.2E-08 4.2E-13 87.5 6.3 191 259-459 3-200 (281)
147 2fbn_A 70 kDa peptidylprolyl i 98.7 1.8E-07 6.2E-12 75.6 12.9 117 304-422 13-147 (198)
148 2xev_A YBGF; tetratricopeptide 98.7 1.7E-07 5.8E-12 69.7 11.7 102 367-470 8-117 (129)
149 1hxi_A PEX5, peroxisome target 98.7 5.5E-08 1.9E-12 71.3 8.6 98 364-463 20-119 (121)
150 1a17_A Serine/threonine protei 98.7 2.2E-07 7.5E-12 72.5 12.7 109 362-472 14-124 (166)
151 4f3v_A ESX-1 secretion system 98.7 1.1E-06 3.8E-11 73.5 17.1 180 7-189 18-238 (282)
152 2hr2_A Hypothetical protein; a 98.7 6.5E-08 2.2E-12 72.9 8.7 106 366-471 16-144 (159)
153 1elr_A TPR2A-domain of HOP; HO 98.7 1.1E-07 3.7E-12 70.8 10.0 108 363-473 6-122 (131)
154 2kck_A TPR repeat; tetratricop 98.7 1.3E-07 4.4E-12 68.2 9.9 100 362-463 7-111 (112)
155 3rkv_A Putative peptidylprolyl 98.7 1.1E-07 3.6E-12 74.1 9.8 77 396-472 62-141 (162)
156 2c2l_A CHIP, carboxy terminus 98.7 1E-07 3.5E-12 81.7 10.4 93 160-253 5-100 (281)
157 2vyi_A SGTA protein; chaperone 98.7 4.1E-07 1.4E-11 67.5 12.2 117 326-445 12-130 (131)
158 3gw4_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 76.5 10.3 62 329-390 110-176 (203)
159 2vgx_A Chaperone SYCD; alterna 98.7 1E-07 3.6E-12 72.7 8.8 93 328-423 23-115 (148)
160 2lni_A Stress-induced-phosphop 98.6 4.5E-07 1.6E-11 67.6 12.2 115 326-443 16-132 (133)
161 1na0_A Designed protein CTPR3; 98.6 7E-07 2.4E-11 65.6 13.1 112 326-440 9-122 (125)
162 4gcn_A Protein STI-1; structur 98.6 4.7E-07 1.6E-11 66.9 11.5 105 328-433 10-120 (127)
163 2fbn_A 70 kDa peptidylprolyl i 98.6 8.7E-08 3E-12 77.5 7.9 139 335-474 13-167 (198)
164 3ro3_A PINS homolog, G-protein 98.6 2.7E-07 9.2E-12 71.6 10.1 134 328-461 11-161 (164)
165 2if4_A ATFKBP42; FKBP-like, al 98.6 1.7E-07 5.7E-12 82.7 9.6 133 328-464 181-334 (338)
166 1dce_A Protein (RAB geranylger 98.6 2.3E-06 7.9E-11 80.7 17.7 162 311-475 45-238 (567)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 4.7E-07 1.6E-11 83.5 12.8 148 308-457 247-414 (457)
168 3k9i_A BH0479 protein; putativ 98.6 6.6E-08 2.3E-12 70.5 5.6 93 374-467 3-99 (117)
169 3q7a_A Farnesyltransferase alp 98.6 0.00013 4.6E-09 63.2 26.4 170 135-310 66-257 (349)
170 2e2e_A Formate-dependent nitri 98.6 3.1E-07 1.1E-11 72.6 9.4 93 327-422 45-140 (177)
171 4b4t_Q 26S proteasome regulato 98.5 3.4E-06 1.2E-10 77.4 16.9 207 232-457 11-244 (434)
172 2xcb_A PCRH, regulatory protei 98.5 1.6E-06 5.4E-11 65.6 12.0 104 317-423 6-112 (142)
173 3upv_A Heat shock protein STI1 98.5 1.3E-06 4.5E-11 64.5 11.2 94 327-423 5-98 (126)
174 4b4t_Q 26S proteasome regulato 98.5 1.3E-05 4.4E-10 73.5 20.3 163 228-390 58-245 (434)
175 1ihg_A Cyclophilin 40; ppiase 98.5 8.5E-07 2.9E-11 79.1 11.7 79 396-474 272-352 (370)
176 3sz7_A HSC70 cochaperone (SGT) 98.5 1.9E-06 6.5E-11 67.1 12.3 95 326-423 11-105 (164)
177 1elw_A TPR1-domain of HOP; HOP 98.5 3.7E-06 1.3E-10 60.9 13.2 108 326-436 4-113 (118)
178 1elr_A TPR2A-domain of HOP; HO 98.5 1.3E-06 4.3E-11 64.9 10.2 111 327-438 5-121 (131)
179 1na3_A Designed protein CTPR2; 98.4 1E-06 3.4E-11 60.6 8.0 80 396-475 8-89 (91)
180 3dss_A Geranylgeranyl transfer 98.4 1.8E-05 6.2E-10 68.2 17.2 158 311-471 90-280 (331)
181 2kck_A TPR repeat; tetratricop 98.4 2.8E-06 9.4E-11 60.9 10.5 96 325-423 5-103 (112)
182 2if4_A ATFKBP42; FKBP-like, al 98.4 9.5E-07 3.3E-11 77.8 9.3 109 362-473 180-308 (338)
183 3q49_B STIP1 homology and U bo 98.4 6.8E-06 2.3E-10 61.5 12.7 97 324-423 7-103 (137)
184 1hxi_A PEX5, peroxisome target 98.4 2E-06 6.9E-11 62.8 9.4 98 328-428 19-117 (121)
185 1wao_1 Serine/threonine protei 98.4 4.8E-07 1.6E-11 83.8 7.4 118 301-421 12-134 (477)
186 1zu2_A Mitochondrial import re 98.4 5.9E-07 2E-11 67.5 6.4 94 375-470 16-132 (158)
187 2dba_A Smooth muscle cell asso 98.4 7.5E-06 2.6E-10 62.2 12.8 108 325-436 27-140 (148)
188 1wao_1 Serine/threonine protei 98.3 3E-06 1E-10 78.4 11.5 117 335-454 15-135 (477)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.1E-06 1.4E-10 77.2 12.1 126 295-423 268-412 (457)
190 2l6j_A TPR repeat-containing p 98.3 2.4E-06 8.3E-11 61.3 8.2 75 399-473 6-88 (111)
191 2xev_A YBGF; tetratricopeptide 98.3 6.1E-06 2.1E-10 61.0 10.0 92 329-423 5-102 (129)
192 3k9i_A BH0479 protein; putativ 98.3 1.5E-06 5.1E-11 63.2 6.3 83 339-423 3-87 (117)
193 3ro3_A PINS homolog, G-protein 98.3 4E-06 1.4E-10 64.8 8.9 96 328-423 51-155 (164)
194 1klx_A Cysteine rich protein B 98.2 1.7E-05 5.9E-10 59.4 11.1 120 340-470 9-136 (138)
195 3rkv_A Putative peptidylprolyl 98.2 1.2E-05 4.2E-10 62.2 10.1 100 328-429 13-130 (162)
196 3n71_A Histone lysine methyltr 98.2 9.8E-06 3.3E-10 74.5 10.6 124 335-458 318-464 (490)
197 2kat_A Uncharacterized protein 98.2 9.6E-06 3.3E-10 58.6 8.6 65 396-460 18-84 (115)
198 2l6j_A TPR repeat-containing p 98.2 5.5E-06 1.9E-10 59.3 7.2 94 326-423 4-104 (111)
199 1ihg_A Cyclophilin 40; ppiase 98.1 1.8E-05 6.3E-10 70.4 11.1 122 328-451 225-363 (370)
200 2hr2_A Hypothetical protein; a 98.1 2.9E-05 1E-09 58.5 9.8 96 328-423 13-128 (159)
201 3n71_A Histone lysine methyltr 98.0 2.5E-05 8.5E-10 71.9 10.7 99 370-468 318-437 (490)
202 3qww_A SET and MYND domain-con 98.0 2.5E-05 8.7E-10 70.5 10.0 96 373-468 310-426 (433)
203 3qwp_A SET and MYND domain-con 97.9 6.1E-05 2.1E-09 68.2 10.9 101 368-468 294-415 (429)
204 2kc7_A BFR218_protein; tetratr 97.9 4.5E-05 1.5E-09 53.2 8.1 52 369-422 8-60 (99)
205 3ma5_A Tetratricopeptide repea 97.9 1.5E-05 5E-10 55.9 5.1 64 397-460 7-72 (100)
206 1pc2_A Mitochondria fission pr 97.9 6.2E-05 2.1E-09 55.9 8.2 93 375-469 12-111 (152)
207 2v5f_A Prolyl 4-hydroxylase su 97.9 0.00011 3.9E-09 51.6 9.4 44 427-470 44-87 (104)
208 3ma5_A Tetratricopeptide repea 97.9 7.1E-05 2.4E-09 52.3 8.4 84 325-409 6-89 (100)
209 3ly7_A Transcriptional activat 97.9 0.00069 2.4E-08 58.7 15.7 143 324-469 192-349 (372)
210 2kat_A Uncharacterized protein 97.8 5.2E-05 1.8E-09 54.6 7.5 60 328-388 21-80 (115)
211 1dce_A Protein (RAB geranylger 97.8 0.00032 1.1E-08 66.1 14.7 134 337-474 39-189 (567)
212 1klx_A Cysteine rich protein B 97.8 0.00023 7.7E-09 53.2 10.3 109 274-390 9-126 (138)
213 1na3_A Designed protein CTPR2; 97.8 0.00024 8.2E-09 48.3 9.8 81 327-410 10-90 (91)
214 3lvg_A Clathrin heavy chain 1; 97.8 3.2E-06 1.1E-10 74.5 -0.1 212 23-247 80-326 (624)
215 3lvg_A Clathrin heavy chain 1; 97.6 4.7E-06 1.6E-10 73.5 -2.1 237 92-347 54-325 (624)
216 2kc7_A BFR218_protein; tetratr 97.5 6.6E-05 2.3E-09 52.3 4.0 55 334-389 8-63 (99)
217 1zu2_A Mitochondrial import re 97.5 0.00012 4.1E-09 55.0 5.5 40 272-312 14-53 (158)
218 1nzn_A CGI-135 protein, fissio 97.5 0.0017 5.9E-08 46.3 11.1 95 373-469 13-114 (126)
219 3bee_A Putative YFRE protein; 97.5 0.00056 1.9E-08 46.7 8.1 70 394-463 3-77 (93)
220 3mkq_A Coatomer beta'-subunit; 97.4 0.017 5.9E-07 57.5 20.6 153 34-218 607-760 (814)
221 3ly7_A Transcriptional activat 97.4 0.0083 2.8E-07 52.1 15.5 72 324-400 275-346 (372)
222 3qwp_A SET and MYND domain-con 97.1 0.004 1.4E-07 56.4 10.8 91 333-423 294-397 (429)
223 3qww_A SET and MYND domain-con 96.9 0.0025 8.7E-08 57.6 8.2 63 327-389 341-410 (433)
224 3mkq_A Coatomer beta'-subunit; 96.9 0.021 7.3E-07 56.9 15.5 168 5-222 609-777 (814)
225 3mkq_B Coatomer subunit alpha; 96.9 0.087 3E-06 40.2 15.0 99 104-220 17-115 (177)
226 3mkq_B Coatomer subunit alpha; 96.7 0.14 4.7E-06 39.1 15.1 127 5-149 15-141 (177)
227 3o48_A Mitochondria fission 1 96.6 0.021 7.1E-07 40.9 8.9 77 392-468 35-117 (134)
228 1y8m_A FIS1; mitochondria, unk 96.5 0.063 2.2E-06 39.0 11.4 75 394-468 36-116 (144)
229 3bee_A Putative YFRE protein; 96.5 0.04 1.4E-06 37.3 10.0 64 325-389 5-71 (93)
230 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0082 2.8E-07 41.9 6.6 58 366-423 10-72 (104)
231 1pc2_A Mitochondria fission pr 96.5 0.023 7.8E-07 42.2 9.1 84 342-428 14-103 (152)
232 4h7y_A Dual specificity protei 96.4 0.075 2.6E-06 38.9 10.9 96 324-422 11-119 (161)
233 4ady_A RPN2, 26S proteasome re 96.1 1.3 4.3E-05 44.0 32.0 268 168-440 383-672 (963)
234 3u64_A Protein TP_0956; tetrat 96.1 0.013 4.6E-07 48.6 6.7 76 343-423 180-266 (301)
235 1qsa_A Protein (soluble lytic 96.0 1.1 3.8E-05 42.4 30.6 115 339-457 227-347 (618)
236 3ffl_A Anaphase-promoting comp 95.5 0.083 2.8E-06 39.6 8.3 58 332-389 26-91 (167)
237 1wy6_A Hypothetical protein ST 95.4 0.49 1.7E-05 34.0 14.7 140 235-393 17-156 (172)
238 4h7y_A Dual specificity protei 95.1 0.29 1E-05 35.9 9.7 108 359-468 11-133 (161)
239 4b4t_P 26S proteasome regulato 94.9 0.91 3.1E-05 41.2 15.0 185 238-423 29-244 (445)
240 3ltj_A Alpharep-4; protein eng 94.7 1.2 4.2E-05 35.0 19.4 118 17-138 19-136 (201)
241 1nzn_A CGI-135 protein, fissio 94.7 0.21 7.2E-06 35.6 8.0 85 340-427 15-105 (126)
242 3u64_A Protein TP_0956; tetrat 94.6 0.27 9.3E-06 41.0 9.8 83 210-292 179-272 (301)
243 1wy6_A Hypothetical protein ST 94.6 0.84 2.9E-05 32.8 12.3 84 207-292 74-157 (172)
244 3ltm_A Alpha-REP4; protein eng 94.5 1.4 4.8E-05 35.0 19.3 80 60-139 32-111 (211)
245 3ffl_A Anaphase-promoting comp 94.3 0.28 9.6E-06 36.8 8.4 118 356-474 13-166 (167)
246 3txn_A 26S proteasome regulato 93.5 3.2 0.00011 36.7 15.0 25 262-286 21-45 (394)
247 2wpv_A GET4, UPF0363 protein Y 93.4 3.2 0.00011 35.2 20.3 180 71-288 23-216 (312)
248 2wpv_A GET4, UPF0363 protein Y 92.9 3.8 0.00013 34.8 18.3 169 195-390 34-217 (312)
249 1qsa_A Protein (soluble lytic 92.6 7.2 0.00025 37.0 35.2 112 240-354 229-347 (618)
250 4gns_B Protein CSD3, chitin bi 92.5 6.1 0.00021 38.3 16.5 52 371-424 347-398 (754)
251 3ltm_A Alpha-REP4; protein eng 92.5 3.3 0.00011 32.8 19.4 94 77-175 18-111 (211)
252 1zbp_A Hypothetical protein VP 92.4 2.9 0.0001 34.3 12.1 125 334-465 5-136 (273)
253 4ady_A RPN2, 26S proteasome re 92.3 9.7 0.00033 37.9 32.4 251 201-456 381-656 (963)
254 4fhn_B Nucleoporin NUP120; pro 92.2 6.3 0.00022 40.8 17.4 163 96-277 816-988 (1139)
255 4gns_B Protein CSD3, chitin bi 92.0 0.99 3.4E-05 43.7 10.4 122 332-455 254-397 (754)
256 4b4t_P 26S proteasome regulato 91.9 7.1 0.00024 35.4 20.9 197 208-422 30-263 (445)
257 3o48_A Mitochondria fission 1 91.4 1.7 5.8E-05 31.2 8.5 71 357-428 36-110 (134)
258 2ff4_A Probable regulatory pro 91.1 1.9 6.4E-05 38.3 10.8 73 330-403 175-251 (388)
259 4fhn_B Nucleoporin NUP120; pro 89.9 11 0.00039 39.0 16.7 186 265-458 817-1050(1139)
260 1y8m_A FIS1; mitochondria, unk 89.9 4 0.00014 29.7 9.4 70 358-428 36-109 (144)
261 1v54_E Cytochrome C oxidase po 89.8 2.5 8.6E-05 28.5 7.6 62 342-405 26-87 (109)
262 2uwj_G Type III export protein 89.6 3.3 0.00011 27.7 9.0 86 174-264 21-106 (115)
263 2p58_C Putative type III secre 89.3 3.6 0.00012 27.6 9.5 86 174-264 22-107 (116)
264 3lpz_A GET4 (YOR164C homolog); 89.0 10 0.00035 32.5 21.9 164 98-288 41-215 (336)
265 2ff4_A Probable regulatory pro 88.9 3.1 0.00011 36.9 10.4 53 199-251 176-231 (388)
266 3ltj_A Alpharep-4; protein eng 88.5 7.5 0.00026 30.4 19.9 79 60-138 27-105 (201)
267 1v54_E Cytochrome C oxidase po 87.4 2.7 9.2E-05 28.3 6.5 45 44-88 28-72 (109)
268 1oyz_A Hypothetical protein YI 87.1 12 0.00041 31.1 20.1 182 17-210 28-222 (280)
269 1zbp_A Hypothetical protein VP 85.8 14 0.00046 30.5 11.7 111 34-151 5-128 (273)
270 2y69_E Cytochrome C oxidase su 84.9 6 0.0002 28.4 7.6 60 344-405 71-130 (152)
271 4b4t_R RPN7, 26S proteasome re 84.6 7.2 0.00025 35.1 10.4 95 296-390 132-237 (429)
272 3lpz_A GET4 (YOR164C homolog); 83.7 20 0.00069 30.7 22.8 169 195-389 36-215 (336)
273 2uwj_G Type III export protein 82.1 9.2 0.00032 25.7 8.9 85 275-364 21-105 (115)
274 4b4t_R RPN7, 26S proteasome re 81.5 20 0.00067 32.3 12.0 63 328-390 133-197 (429)
275 2y69_E Cytochrome C oxidase su 80.6 6.8 0.00023 28.1 6.5 57 44-100 71-130 (152)
276 3eiq_C Programmed cell death p 78.9 32 0.0011 29.9 12.0 71 298-368 220-295 (358)
277 3esl_A Checkpoint serine/threo 74.1 29 0.001 27.0 10.7 54 77-130 95-153 (202)
278 2p58_C Putative type III secre 73.7 18 0.00061 24.4 9.7 45 72-118 51-95 (116)
279 2d2s_A Exocyst complex compone 71.9 17 0.00058 29.3 7.8 82 2-86 25-116 (235)
280 3bqo_A Telomeric repeat-bindin 69.5 20 0.00068 27.7 7.0 60 413-472 94-160 (211)
281 4b4t_S RPN3, 26S proteasome re 69.2 17 0.00057 33.4 7.8 63 400-462 234-303 (523)
282 4b4t_S RPN3, 26S proteasome re 65.9 83 0.0028 28.9 12.1 26 297-322 233-258 (523)
283 2d2s_A Exocyst complex compone 65.8 49 0.0017 26.7 9.3 88 130-220 25-117 (235)
284 1wdy_A 2-5A-dependent ribonucl 65.5 55 0.0019 26.8 11.1 16 6-21 13-28 (285)
285 3bu8_A Telomeric repeat-bindin 61.9 40 0.0014 26.5 7.5 47 342-388 88-141 (235)
286 3kae_A CDC27, possible protein 61.8 49 0.0017 25.0 8.8 104 7-117 14-139 (242)
287 1oyz_A Hypothetical protein YI 61.2 68 0.0023 26.4 21.9 22 333-355 242-263 (280)
288 2fe3_A Peroxide operon regulat 61.1 40 0.0014 24.6 7.5 16 73-88 33-48 (145)
289 2r9g_A AAA ATPase, central reg 60.2 58 0.002 25.3 9.8 65 229-294 15-87 (204)
290 2ion_A PDCD4, programmed cell 58.5 53 0.0018 24.3 9.0 26 96-121 13-38 (152)
291 3eiq_C Programmed cell death p 56.7 99 0.0034 26.8 16.1 69 197-265 220-293 (358)
292 3ctd_A Putative ATPase, AAA fa 55.8 72 0.0025 25.0 9.8 67 228-294 35-109 (213)
293 3bge_A Predicted ATPase; struc 55.8 70 0.0024 24.8 8.9 61 230-290 9-77 (201)
294 3ygs_P Procaspase 9; apoptosis 55.1 26 0.00089 23.5 5.0 34 107-140 52-85 (97)
295 4a1g_A Mitotic checkpoint seri 54.6 62 0.0021 23.9 10.4 35 95-129 104-138 (152)
296 3txn_A 26S proteasome regulato 53.1 1.2E+02 0.0041 26.8 24.5 126 195-321 20-165 (394)
297 4gq2_M Nucleoporin NUP120; bet 52.6 1.4E+02 0.0049 30.1 12.1 127 98-239 816-950 (950)
298 2nsz_A Programmed cell death p 52.2 61 0.0021 23.1 10.4 26 96-121 11-36 (129)
299 3kae_A CDC27, possible protein 52.2 74 0.0025 24.1 16.2 37 425-461 202-240 (242)
300 2ijq_A Hypothetical protein; s 50.9 75 0.0026 23.7 7.4 51 407-457 42-103 (161)
301 1ya0_A SMG-7 transcript varian 50.7 26 0.0009 32.1 5.9 75 400-474 155-231 (497)
302 2xig_A Ferric uptake regulatio 50.3 72 0.0025 23.4 7.8 26 31-56 31-56 (150)
303 3esl_A Checkpoint serine/threo 49.7 91 0.0031 24.3 11.6 55 139-193 95-149 (202)
304 2ion_A PDCD4, programmed cell 49.3 65 0.0022 23.8 6.8 25 126-150 12-36 (152)
305 4ets_A Ferric uptake regulatio 48.9 60 0.002 24.3 6.7 36 52-88 24-59 (162)
306 1wdy_A 2-5A-dependent ribonucl 48.7 1.1E+02 0.0037 24.9 10.1 21 238-258 192-212 (285)
307 3kea_A K1L; tropism, ANK repea 47.5 1.2E+02 0.0041 25.0 10.2 203 6-219 7-217 (285)
308 1ug3_A EIF4GI, eukaryotic prot 46.8 1.3E+02 0.0046 25.8 9.6 23 98-120 17-39 (339)
309 4gq2_M Nucleoporin NUP120; bet 45.7 2E+02 0.0067 29.2 11.8 128 301-443 816-950 (950)
310 2p1h_A APAF-1, apoptotic prote 45.4 55 0.0019 21.6 5.5 33 75-107 50-82 (94)
311 2xig_A Ferric uptake regulatio 44.5 91 0.0031 22.9 8.0 62 350-413 16-77 (150)
312 2fe3_A Peroxide operon regulat 44.4 89 0.003 22.7 7.3 62 350-413 11-72 (145)
313 2w57_A Ferric uptake regulatio 43.6 94 0.0032 22.8 7.5 63 350-414 6-69 (150)
314 1mzb_A Ferric uptake regulatio 43.2 89 0.003 22.4 7.1 62 351-414 8-70 (136)
315 4aez_C MAD3, mitotic spindle c 42.0 1.3E+02 0.0044 23.9 8.9 47 43-89 131-178 (223)
316 3jxi_A Vanilloid receptor-rela 41.6 53 0.0018 26.6 6.1 86 33-119 9-117 (260)
317 2wvi_A Mitotic checkpoint seri 41.5 1.1E+02 0.0038 22.9 9.7 53 142-194 79-131 (164)
318 2wvi_A Mitotic checkpoint seri 40.3 1.1E+02 0.0039 22.8 10.4 44 45-88 79-123 (164)
319 3eyy_A Putative iron uptake re 39.9 84 0.0029 22.9 6.2 45 30-75 22-66 (145)
320 3eyy_A Putative iron uptake re 39.8 90 0.0031 22.7 6.4 61 350-413 8-68 (145)
321 1ug3_A EIF4GI, eukaryotic prot 38.8 1.9E+02 0.0064 24.9 13.7 26 65-90 15-40 (339)
322 3ygs_P Procaspase 9; apoptosis 38.1 53 0.0018 21.9 4.5 38 208-245 51-88 (97)
323 2etb_A Transient receptor pote 37.5 53 0.0018 26.5 5.5 86 33-119 6-114 (256)
324 3bu8_A Telomeric repeat-bindin 37.2 35 0.0012 26.8 3.7 60 377-436 88-154 (235)
325 2w57_A Ferric uptake regulatio 36.1 97 0.0033 22.7 6.1 44 32-75 22-66 (150)
326 1bpo_A Protein (clathrin); cla 33.7 2.7E+02 0.0093 25.2 9.9 69 187-255 354-425 (494)
327 2o03_A Probable zinc uptake re 31.9 95 0.0032 22.0 5.3 45 332-376 16-60 (131)
328 2cfu_A SDSA1; SDS-hydrolase, l 31.8 1.2E+02 0.0042 29.0 7.5 58 414-474 437-494 (658)
329 2o03_A Probable zinc uptake re 31.1 1E+02 0.0034 21.9 5.3 47 30-76 14-60 (131)
330 2b7e_A PRE-mRNA processing pro 30.3 68 0.0023 19.1 3.4 33 42-74 2-35 (59)
331 4a1g_A Mitotic checkpoint seri 29.8 1.7E+02 0.0058 21.6 11.3 52 142-193 84-135 (152)
332 3qil_A Clathrin heavy chain 1; 29.8 14 0.00047 25.9 0.5 71 305-383 16-86 (125)
333 1te4_A Conserved protein MTH18 29.7 1.4E+02 0.0049 20.8 10.9 64 60-123 55-118 (131)
334 2f6m_A Suppressor protein STP2 29.3 99 0.0034 18.8 4.2 50 27-77 3-52 (65)
335 3bqo_A Telomeric repeat-bindin 29.2 1.6E+02 0.0054 22.9 6.0 22 130-151 124-145 (211)
336 1k1a_A B-cell lymphoma 3-encod 28.9 1.3E+02 0.0045 23.6 6.5 192 164-360 11-210 (241)
337 1mzb_A Ferric uptake regulatio 28.8 1.6E+02 0.0054 21.0 6.8 16 41-56 33-48 (136)
338 3mwm_A ZUR, putative metal upt 28.3 85 0.0029 22.6 4.6 38 338-375 25-62 (139)
339 3ax2_A Mitochondrial import re 28.1 1.1E+02 0.0039 19.1 4.8 28 434-461 22-49 (73)
340 3mwm_A ZUR, putative metal upt 27.9 98 0.0034 22.3 4.9 47 30-76 17-63 (139)
341 2ynq_A ESSB; membrane protein, 27.3 1.9E+02 0.0066 21.5 9.1 22 69-90 81-102 (161)
342 1ya0_A SMG-7 transcript varian 26.9 1.9E+02 0.0066 26.5 7.5 77 363-441 154-232 (497)
343 4aez_C MAD3, mitotic spindle c 26.8 2.4E+02 0.0082 22.4 9.8 53 343-396 131-184 (223)
344 2fu4_A Ferric uptake regulatio 24.5 1.4E+02 0.0047 18.8 7.4 62 350-413 6-68 (83)
345 2p1h_A APAF-1, apoptotic prote 23.3 1.6E+02 0.0055 19.2 7.1 61 178-242 24-84 (94)
346 3kea_A K1L; tropism, ANK repea 23.2 3.1E+02 0.011 22.4 11.5 80 67-147 34-116 (285)
347 1oai_A Nuclear RNA export fact 23.1 65 0.0022 19.1 2.5 23 374-396 33-55 (59)
348 1te4_A Conserved protein MTH18 22.9 2E+02 0.0067 20.0 8.1 66 84-150 48-113 (131)
349 2rpa_A Katanin P60 ATPase-cont 22.7 88 0.003 19.9 3.1 25 433-457 16-40 (78)
350 3hra_A Ankyrin repeat family p 22.6 2.5E+02 0.0085 21.1 10.1 17 5-21 12-28 (201)
351 1z5h_A Tricorn protease intera 22.3 5.6E+02 0.019 25.1 12.7 30 158-187 648-677 (780)
352 1bpo_A Protein (clathrin); cla 22.2 4.5E+02 0.015 23.9 12.6 111 106-219 343-454 (494)
353 3eu9_A Huntingtin-interacting 22.1 2.8E+02 0.0095 21.5 7.3 19 68-86 46-64 (240)
354 2ynq_A ESSB; membrane protein, 22.0 2.5E+02 0.0085 20.9 8.3 83 336-424 18-100 (161)
355 3eu9_A Huntingtin-interacting 21.9 2.8E+02 0.0096 21.5 8.3 110 4-119 15-133 (240)
356 2rg8_A Programmed cell death p 21.7 1.9E+02 0.0066 21.6 5.5 23 128-150 15-37 (165)
357 3ljn_A Hypothetical protein; a 21.2 3.8E+02 0.013 22.8 8.5 15 205-219 181-195 (364)
358 3qye_A TBC1 domain family memb 21.2 3.8E+02 0.013 22.7 10.7 47 246-292 209-255 (331)
359 4ets_A Ferric uptake regulatio 20.8 2.6E+02 0.009 20.7 6.7 42 269-310 41-84 (162)
360 3ctd_A Putative ATPase, AAA fa 20.5 3.2E+02 0.011 21.5 8.7 60 337-397 46-110 (213)
361 3f3f_C Nucleoporin NUP85; stru 20.4 3E+02 0.01 25.7 7.3 27 63-89 518-544 (570)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-44 Score=349.70 Aligned_cols=462 Identities=11% Similarity=0.037 Sum_probs=393.9
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 7 NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+.|.+..+...+...+.++...|+.++..+.+.|++++|..+|+++... .|+..++..++..|.+.|++++|+.+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4456666677777777788999999999999999999999999999864 57888999999999999999999999999
Q ss_pred cc--cccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCChhHHHHH
Q 038936 87 MQ--ERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-------------------DNFSWTAMISGYVRYNQPIEALDL 145 (476)
Q Consensus 87 ~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~ 145 (476)
+. .+++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 84 578899999999999999999999999965443 377899999999999999999999
Q ss_pred HHHHHhccCCCCCch------------------------------------HHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 146 YRMMQNFENSVSNKF------------------------------------TLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 146 ~~~~~~~~~~~~~~~------------------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
|+++....+..++.. +|+.++..+.+.|++++|.++++.+.+.
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 999987332222111 1222355667889999999999998765
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGV 266 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (476)
+++..++..++..|.+.|++++|+.+|+++.+ .+..+++.++.++.+.|++++|..+++++.+.. +.+..++..+
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 68899999999999999999999999999954 356789999999999999999999999998764 5678899999
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 343 (476)
...+.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999875 56788999999999999999999999998763 47789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhc---CCCCC--hhhHHHHHHHHHhcCChhhHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH---GLTYT--ADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
+|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999875 4578899999999999999999999999998653 44666 6799999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.++++ ...| +..+|..++.+|...|++++|.+.++++++++|+++.++..|+++|.+
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99996 3334 788999999999999999999999999999999999999999999975
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-40 Score=320.45 Aligned_cols=427 Identities=10% Similarity=0.029 Sum_probs=365.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHHHHHHHh
Q 038936 39 NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQARNLFD 116 (476)
Q Consensus 39 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 116 (476)
.|.+..+...+..+ ..++...|+.++..|.+.|++++|+.+|+++.+ |+..++..++.+|.+.|++++|..+|+
T Consensus 66 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34444444444332 235788999999999999999999999999874 777899999999999999999999999
Q ss_pred cCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc--------------CCCCCchHHHHHHHHHHhhhhhhhHHH
Q 038936 117 EMP--QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFE--------------NSVSNKFTLSSVLSAVSAIQCLRLGKE 180 (476)
Q Consensus 117 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~ 180 (476)
.+. .+++.+++.++.+|.+.|++++|+++|+++.... +.+++..+++.++.++.+.|++++|.+
T Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 142 KEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp HTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 984 5688899999999999999999999999543212 234567899999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHH--------------------------------------HHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 181 IHGYIMRTGFDSDEVVWS--------------------------------------ALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~--------------------------------------~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
.|+++.+.+ +.+...+. .++..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 222 CYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 999998875 22333322 235566788999999999999977
Q ss_pred --cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHH
Q 038936 223 --RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASA 300 (476)
Q Consensus 223 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (476)
++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 788999999999999999999999999999876 4577889999999999999999999999999765 677889999
Q ss_pred HHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
++.+|.+.|++++|..+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999998763 457799999999999999999999999999864 45778999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCCc--HHHHHHHHHHHHhcCChHHH
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-------PMKPD--KFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A 448 (476)
++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999975 3557888999999999999999999999987 34677 78999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 449 KRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+..++++++.+|+++.+|..|+.+|..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.1e-31 Score=239.53 Aligned_cols=366 Identities=14% Similarity=0.097 Sum_probs=259.7
Q ss_pred HHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhH
Q 038936 68 LDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIE 141 (476)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 141 (476)
...+.+.|++++|++.++.+.+ | +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 3444566666666666666543 2 233444555555556666666555554432 133445555555555555555
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMV 221 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 221 (476)
|++.|+++.. .. |.+..++..++.++...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~------------------------------------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 86 AIEHYRHALR------------------------------------LK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHH------------------------------------HC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------------------------cC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555543 32 2334455556666666666666666666553
Q ss_pred c--c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhH
Q 038936 222 D--R-DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAA 298 (476)
Q Consensus 222 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 298 (476)
+ | +...+..+...+...|++++|...|.++.+.. +.+..++..+...+...|+++.|...++++.+.+ +.+...+
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 3 2 22345555566666666666666666666543 3345566666666667777777777777766654 4455667
Q ss_pred HHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 299 SALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
..+...+...|++++|...+++..+ | +..++..+...+...|++++|+..|+++.+.+ +.+..++..++.++.+.|
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 7777777888888888887776653 3 46788889999999999999999999999864 335678889999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAE 453 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 453 (476)
++++|.+.++++.+. .+.+..++..++.++.+.|++++|.+.++++ ...| +..++..++.++...|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999975 4667888999999999999999999999996 4445 57789999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHhhhc
Q 038936 454 ALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 454 ~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
++++++|+++.++..++.+|.+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHhHHHHHHH
Confidence 9999999999999999998864
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.2e-28 Score=221.17 Aligned_cols=369 Identities=12% Similarity=0.093 Sum_probs=179.7
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQ 81 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 81 (476)
+.+.|++++|++.++.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|+
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555555542 3334444444455555555555555555555432 234445555555555555555555
Q ss_pred HHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC-ch
Q 038936 82 TLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN-KF 160 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 160 (476)
..|+++.+.+ ..+..+|..+..++.+.|++++|.+.|+++... .|+ ..
T Consensus 88 ~~~~~al~~~----------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 136 (388)
T 1w3b_A 88 EHYRHALRLK----------------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYC 136 (388)
T ss_dssp HHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTH
T ss_pred HHHHHHHHcC----------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHH
Confidence 5555543210 112234455555555555555555555555431 122 12
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHh
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQ 237 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 237 (476)
.+..+...+...|++++|.+.++.+.+.. |.+..++..+...+...|++++|+..|+++.+. +...|..+...+..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22233333333344444444444433332 333445555666666666666666666655332 23345555555566
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 238 EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
.|++++|...+.+..+.. +.+..++..+...+...|++++|...++.+.+.+ +.++
T Consensus 216 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~---------------------- 271 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP---------------------- 271 (388)
T ss_dssp TTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH----------------------
T ss_pred cCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH----------------------
Confidence 666666666665555542 2234445555555555555555555555555432 2222
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh
Q 038936 318 FNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 397 (476)
.+|..+...+.+.|++++|+..++++.+.. +.+..++..++..+...|++++|.+.++++.+. .+.+.
T Consensus 272 ---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 339 (388)
T 1w3b_A 272 ---------DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA 339 (388)
T ss_dssp ---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCH
T ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence 344444555555555555555555555442 234445555555555555555555555555532 23334
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH 442 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 442 (476)
..+..++.+|.+.|++++|.+.++++ ...| +...|..++..+...
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 45555555555555555555555553 3333 333444454444443
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-27 Score=226.60 Aligned_cols=442 Identities=11% Similarity=-0.009 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHH
Q 038936 26 PSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGF 102 (476)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 102 (476)
...+......+.+.|++++|...|+++.+.+ |+..++..+..++...|++++|+..++.+.+ | +...+..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3455666677777777777777777777754 5677777777777777777777777777654 2 345677777777
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHH
Q 038936 103 TKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGK 179 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 179 (476)
.+.|++++|...|+++.+. +......++..+........+.+.+..+.. ....|+.....................
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT-ATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCChhhHHHhhccCCchhH
Confidence 7777777777777665432 222333333333332222222222221111 000111110000000000000111111
Q ss_pred HHHHHHHHcC---------CCchHHHHHHHHHHHHc---CCCHHHHHHHHHhhcc----------------c-chhhHHH
Q 038936 180 EIHGYIMRTG---------FDSDEVVWSALSDMYGK---CGSINEARQIFDKMVD----------------R-DVVSWTA 230 (476)
Q Consensus 180 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~ 230 (476)
.+...+.... .+.+...+......+.. .|++++|+..|+++.+ + +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1111110000 02234555555555554 7889999888888755 1 2446777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 231 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
+...+...|++++|...++++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999988865 337777888888889999999999999888775 5567788888899999999
Q ss_pred hhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 311 VENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 311 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
+++|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988753 356788888999999999999999999998864 335678888899999999999999999999
Q ss_pred HHhcCCCCC----hhhHHHHHHHHHh---cCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 388 KEKHGLTYT----ADHYACIVDLLAR---SGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 388 ~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
....+..++ ...+..++.++.. .|++++|.+.++++ ...| +...+..++..+...|++++|...+++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 875333333 3378899999999 99999999999986 3333 6678889999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhh
Q 038936 459 EPENPATYVTMANIYA 474 (476)
Q Consensus 459 ~p~~~~~~~~l~~~y~ 474 (476)
+|+++.++..+....+
T Consensus 479 ~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 479 ARTMEEKLQAITFAEA 494 (514)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999988887765543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.2e-28 Score=228.00 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCCHHHHHHHHHhhc----ccchhhHHHHHHHHHhcCC---------hh
Q 038936 177 LGKEIHGYIMRTGFDSDE-VVWSALSDMYGKCGSINEARQIFDKMV----DRDVVSWTAMIGRYFQEGR---------RE 242 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~ 242 (476)
.+..+.+.+.+.+..+.+ .+++.+|++|++.|++++|+++|++|. +||..+|+.||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555566656554332 346667777888888888888877773 4677777777777776554 45
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 243 EGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777765
Q ss_pred ----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 038936 323 ----RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHA 374 (476)
Q Consensus 323 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (476)
.||..+|+.++.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 3677777777777777777777777777777777777777777777766543
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.3e-29 Score=231.76 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=165.8
Q ss_pred HHHHHHHHHhccCCCCC-chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC---------HH
Q 038936 142 ALDLYRMMQNFENSVSN-KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGS---------IN 211 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 211 (476)
+..+.+.+.+ .+..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. ++
T Consensus 9 ~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444455554 444333 345677788888888888888888888888888888888888888887654 78
Q ss_pred HHHHHHHhhc----ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHH
Q 038936 212 EARQIFDKMV----DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMT 287 (476)
Q Consensus 212 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 287 (476)
+|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999994 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCC----CCChhhHHHHHHHHHhc
Q 038936 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMP----RPDLVSWTSLIAGYAQN 339 (476)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~ 339 (476)
+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .|+..+|+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999997 49999999999988764
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.8e-26 Score=219.91 Aligned_cols=434 Identities=12% Similarity=0.039 Sum_probs=312.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHHH
Q 038936 25 SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMISG 101 (476)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 101 (476)
....|..+...+.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|++.++++.+ .+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45677888899999999999999999999875 34788899999999999999999999999875 356788899999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHHhhhhhh
Q 038936 102 FTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNF-----ENSVSNKFTLSSVLSAVSAIQCLR 176 (476)
Q Consensus 102 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~ 176 (476)
+...|++++|...|+.+ ..++......+..+...+....|...++.+... ....|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 99999999999999744 333333444455666667778899999888652 122233333222 22223333
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--------CCHHHHHHHHHhhcccch----------hhHHHHHHHHHhc
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKC--------GSINEARQIFDKMVDRDV----------VSWTAMIGRYFQE 238 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~ 238 (476)
.+...+....... +........+...+... |++++|+.+++++.+.++ .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 3222221111100 11122333333333322 478888888888865322 2466667788889
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHH
Q 038936 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318 (476)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (476)
|++++|...+.++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999998864 557778888888889999999999999988875 566778888999999999999999999
Q ss_pred ccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC
Q 038936 319 NGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY 395 (476)
Q Consensus 319 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 395 (476)
+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+..+..+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 88763 346688889999999999999999999998864 34566788889999999999999999999886532222
Q ss_pred C----hhhHHHHHHHHHhc----------CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 396 T----ADHYACIVDLLARS----------GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 396 ~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+ ...+..++.++.+. |++++|...|+++ ...| +...+..++..+...|++++|...+++++++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 12244556778888 9999999999986 3334 56788899999999999999999999999999
Q ss_pred CCCchhHHHH
Q 038936 460 PENPATYVTM 469 (476)
Q Consensus 460 p~~~~~~~~l 469 (476)
|+++.....+
T Consensus 493 ~~~~~~~~~~ 502 (537)
T 3fp2_A 493 RTMDEKLQAT 502 (537)
T ss_dssp --CHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 9887665543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.1e-24 Score=202.69 Aligned_cols=313 Identities=11% Similarity=0.010 Sum_probs=220.8
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 038936 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202 (476)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 202 (476)
+..+..+...+.+.|++++|+.+|+++... .+.+...+..+..++...|+++.|...++.+++.+ +.+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~------- 95 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTA------- 95 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH-------
Confidence 445666666666677777777777666541 12233344444444444444444444444444433 22333
Q ss_pred HHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---hhHHH------------HH
Q 038936 203 MYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA---FTFAG------------VL 267 (476)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~------------l~ 267 (476)
.+..++.+|...|++++|...|+++.+.. +.+. ..+.. +.
T Consensus 96 ------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 96 ------------------------ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554432 1111 22222 23
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 344 (476)
..+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+..+|..++..|...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34677888888888888888775 56777888888999999999999999988764 467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHH------------HHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhc
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGV------------LTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDLLARS 410 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 410 (476)
|+..|+++.+.. +.+...+..+ +..+...|++++|...|+++.+..+..|. ...+..++.++.+.
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 999999998753 2233344333 78899999999999999999975222111 44788899999999
Q ss_pred CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 411 GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 411 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
|++++|++.++++ ...| +...|..++.+|...|++++|...++++++++|+++.++..|+.+
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999996 4344 678999999999999999999999999999999999999999854
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.5e-25 Score=208.53 Aligned_cols=408 Identities=9% Similarity=-0.021 Sum_probs=304.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHh
Q 038936 61 VFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ--R-DNFSWTAMISGYVR 135 (476)
Q Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 135 (476)
...+......+.+.|++++|+..|+++.+ |+...|..+..++.+.|++++|...++++.+ | +..++..+..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45567778889999999999999999875 7888999999999999999999999998764 3 55688899999999
Q ss_pred cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH---HHHHcCCCHHH
Q 038936 136 YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS---DMYGKCGSINE 212 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 212 (476)
.|++++|...|+++.... +++.......+..+........+.+.+..+...+..|+......-. ...........
T Consensus 86 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998632 3445555555555555554444444443333222222111111100 01111111111
Q ss_pred HHHHHHhhc----------ccchhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCC--------CCHhhHHHH
Q 038936 213 ARQIFDKMV----------DRDVVSWTAMIGRYFQ---EGRREEGFALFSELIK-----SGIR--------PNAFTFAGV 266 (476)
Q Consensus 213 a~~~~~~~~----------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~l 266 (476)
....+.... ..+...+......+.. .|++++|...|+++.+ .... .+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222221111 1123445555555554 8999999999999988 3112 234567777
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH
Q 038936 267 LNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 267 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 343 (476)
...+...|+++.|...++.+.+.... ...+..+..++...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988633 88888999999999999999999998764 45678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+|+..++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999864 335678888999999999999999999999975 3456778999999999999999999999986
Q ss_pred -C---CCCc----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 424 -P---MKPD----KFLWASLLGGCRI---HGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 424 -~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
. ..++ ...+..++..+.. .|++++|...++++++.+|+++.++..++.+|..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 2 2222 3488899999999 9999999999999999999999999999998864
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.6e-24 Score=201.65 Aligned_cols=357 Identities=11% Similarity=0.054 Sum_probs=242.1
Q ss_pred HHHHHHHHccc---ccchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038936 79 DAQTLFDEMQE---RDVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNF 152 (476)
Q Consensus 79 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 152 (476)
.+...+..+.. .+...+..++..+.+.|++++|..+|+++.+ .+..++..+..++...|++++|+..|+++...
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444443 3557899999999999999999999998764 36778999999999999999999999999863
Q ss_pred cCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchH---HHHHHHHH------------HHHcCCCHHHHHHHH
Q 038936 153 ENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE---VVWSALSD------------MYGKCGSINEARQIF 217 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~------------~~~~~~~~~~a~~~~ 217 (476)
.+.+...+..+..++...|+++.|.+.++.+.+.. +.+. ..+..++. .+...|++++|+..|
T Consensus 90 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 --KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23456788889999999999999999999998765 4444 55555533 466677777777777
Q ss_pred Hhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 038936 218 DKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 218 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 294 (476)
+++.+ .+...+..++.+|...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 244 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 244 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCh
Confidence 77643 244556667777777777777777777776653 3455666666666777777777777777766553 222
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----HHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD-----HIVFVGVLT 369 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~ 369 (476)
...+..+... + ....+..++..+...|++++|+..|+++.+.. |+ ...+..++.
T Consensus 245 ~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 245 KRCFAHYKQV----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHH----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 2222222000 0 00112234667777888888888888887743 43 335677777
Q ss_pred HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHH---------
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGG--------- 438 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~--------- 438 (476)
++.+.|++++|++.++++.+. .+.+...+..++.+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 788888888888888887764 2446677888888888888888888888875 45553 4455555422
Q ss_pred ---HHhcC-----ChHHHHHHHHH-HHHcCCCCc
Q 038936 439 ---CRIHG-----NLDLAKRAAEA-LFEIEPENP 463 (476)
Q Consensus 439 ---~~~~g-----~~~~A~~~~~~-~~~~~p~~~ 463 (476)
|...| +.+++.+.|++ +++..|++.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 33334 66778888886 778888753
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.3e-24 Score=204.30 Aligned_cols=412 Identities=11% Similarity=0.043 Sum_probs=313.1
Q ss_pred hhhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038936 3 DILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISD 79 (476)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 79 (476)
..+.+.|++++|++.|+++. +.++.+|..+..++.+.|++++|...++++.+.+ +.+..++..+..++...|++++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 35788999999999999984 6788999999999999999999999999999875 3467888999999999999999
Q ss_pred HHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038936 80 AQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFE 153 (476)
Q Consensus 80 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 153 (476)
|+..|+.+ ..++......+..+...+....|...++.+... ........+..+....+.+.+...+.....
T Consensus 112 A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 188 (537)
T 3fp2_A 112 AMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN-- 188 (537)
T ss_dssp HHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--
T ss_pred HHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--
Confidence 99999744 333333333455566667778899998888653 222334455666667777666655443321
Q ss_pred CCCCCchHHHHHHH-HH--------HhhhhhhhHHHHHHHHHHcCCCch------HHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 154 NSVSNKFTLSSVLS-AV--------SAIQCLRLGKEIHGYIMRTGFDSD------EVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 154 ~~~~~~~~~~~ll~-~~--------~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
..+....+...+. .+ ...++++.|..+++.+.+...... ..++..+...+...|++++|...++
T Consensus 189 -~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 -YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp -SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222222222222 11 123588999999999887652211 2356777888999999999999999
Q ss_pred hhcc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh
Q 038936 219 KMVD--RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSF 296 (476)
Q Consensus 219 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 296 (476)
...+ |+...+..+...+...|++++|...+.++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+..
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 345 (537)
T 3fp2_A 268 ESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY 345 (537)
T ss_dssp HHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH
T ss_pred HHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 9854 556778888999999999999999999998875 4567788888999999999999999999999885 55677
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CcHHHHHHHH
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFVGVL 368 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~ 368 (476)
.+..+..++...|++++|...++++.+ .+...+..+...+...|++++|+..++++.+.... .....+....
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 888999999999999999999998764 45668899999999999999999999998875311 1112344455
Q ss_pred HHHhcc----------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 369 TACTHA----------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 369 ~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..+... |++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.|+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 667777 9999999999999975 3556788999999999999999999999996
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=3.1e-22 Score=180.30 Aligned_cols=324 Identities=11% Similarity=0.013 Sum_probs=218.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 038936 123 NFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSD 202 (476)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 202 (476)
+..+..+...+...|++++|+..|+++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345666777777788888888888777652 22234455555555566666666666666655543 333455555555
Q ss_pred HHHcCCCHHHHHHHHHhhcccch------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 203 MYGKCGSINEARQIFDKMVDRDV------VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
.+...|++++|...|+++.+.++ ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 55556666666666555533222 11221110000 00111123456667777
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776664 45566677777777777888888777776653 356678888888888999999999999888
Q ss_pred HcCCCCcHHHHH------------HHHHHHhccCchhhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhhHHHH
Q 038936 354 KSGTQPDHIVFV------------GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA--DHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 354 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
+... .+...+. .++..+...|++++|...++++.+..+..+.. ..+..++.++.+.|++++|.+.
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7542 2222222 23666889999999999999999763221111 3355688999999999999999
Q ss_pred HhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 420 ISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 420 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++++ ...| +...+..++..+...|++++|...++++++++|+++.++..|+.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9986 3344 67799999999999999999999999999999999999999988764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.3e-21 Score=174.03 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=212.7
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
+.+...+..++..+...|++++|+++|+++.+. +...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344445666677777778888888877777543 23445566677777788888888887777754 34556666677
Q ss_pred HHHhccc-cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH
Q 038936 268 NACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 268 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 343 (476)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7788888887777664 44566677777888888888888888877663 33566777888888999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-------CCChhhHHHHHHHHHhcCChhhH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL-------TYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
+|+..++++.+.. +.+...+..++..+...|++++|...++++.+...- +.....+..++.++.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988864 345677888888888999999999999888864311 33456788899999999999999
Q ss_pred HHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 417 EDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 417 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.+.++++ ...| +...+..++..+...|++++|...++++++++|+++.++..|+.+|.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999886 3233 56688888888999999999999999999999999999999988773
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=6.3e-20 Score=172.14 Aligned_cols=373 Identities=12% Similarity=0.031 Sum_probs=178.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHccc-ccchHHHHHHHHHHh----cCCHHHHHHHHh
Q 038936 46 KKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLFDEMQE-RDVCSYNTMISGFTK----GGSLEQARNLFD 116 (476)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 116 (476)
...+....+.| ++..+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 45555555555555 5666666666666543 344555556666655 566666666666
Q ss_pred cCCCC-CcchHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh----hhhhhhHHHHHHHHHH
Q 038936 117 EMPQR-DNFSWTAMISGYVR----YNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA----IQCLRLGKEIHGYIMR 187 (476)
Q Consensus 117 ~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~ 187 (476)
+..+. ++..+..+...|.. .+++++|++.|++... .+ +...+..+...+.. .++.+.|.+.++...+
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55433 44445555555555 5566666666666554 11 22233333333333 3344444444444444
Q ss_pred cCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhhccc-chhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCC
Q 038936 188 TGFDSDEVVWSALSDMYGK----CGSINEARQIFDKMVDR-DVVSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.| +...+..+...|.. .+++++|..+|++..+. ++..+..+...|.. .+++++|..+|++..+.|
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 33 23344444455544 45555555555554332 23344444444443 445555555555554432
Q ss_pred CHhhHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHH
Q 038936 259 NAFTFAGVLNACAD----HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIA 334 (476)
Q Consensus 259 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 334 (476)
+...+..+...+.. .++.++|...++...+.| ++..+..+..
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------------------------~~~a~~~Lg~ 299 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------------------------NSDGQYYLAH 299 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----------------------------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHH
Confidence 22233333333333 444444554444444332 3334444444
Q ss_pred HHHhc-----CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 335 GYAQN-----GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 335 ~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
.|... +++++|+..|++..+.| +...+..+...|...| ++++|+++|+++.+. .++..+..++..
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHH
Confidence 44444 45555555555555543 2233333444443323 455555555555542 234445555555
Q ss_pred HHh----cCChhhHHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC---CCchhHHHHHHh
Q 038936 407 LAR----SGRFHEAEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEP---ENPATYVTMANI 472 (476)
Q Consensus 407 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~ 472 (476)
|.. .+++++|.+.|+++....+...+..++..|.. .+++++|...|+++.+.+| +++.+...|+.+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 555 45555555555554222234444445555544 4555555555555555552 244444444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=4.1e-20 Score=166.36 Aligned_cols=323 Identities=10% Similarity=0.024 Sum_probs=224.7
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHH
Q 038936 91 DVCSYNTMISGFTKGGSLEQARNLFDEMPQ---RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLS 167 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 167 (476)
++..+..+...+...|++++|...|+++.+ .++..+..+..++...|++++|+..|+++... .+.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 456788899999999999999999998864 35678889999999999999999999999863 2335578888999
Q ss_pred HHHhhhhhhhHHHHHHHHHHcCCC---chHHHHHHH------------HHHHHcCCCHHHHHHHHHhhcc---cchhhHH
Q 038936 168 AVSAIQCLRLGKEIHGYIMRTGFD---SDEVVWSAL------------SDMYGKCGSINEARQIFDKMVD---RDVVSWT 229 (476)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 229 (476)
.+...|+++.|...++.+.+.. + .+...+..+ ...+...|++++|+..++++.+ .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999998764 3 345555544 4556666666666666666533 2344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG 309 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (476)
.+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...-
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~---- 232 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK---- 232 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHH----
Confidence 56666666666666666666665543 3344555555555666666666666666655543 22222111110000
Q ss_pred ChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHH
Q 038936 310 NVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFH 385 (476)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 385 (476)
.......+...+.+.|++++|+..++++.+.... +. ..+..+..++...|++++|.+.++
T Consensus 233 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 233 ---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 0111223466788899999999999999886422 22 234557788889999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHHH
Q 038936 386 SIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGCR 440 (476)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 440 (476)
++.+. .+.+...+..++.++.+.|++++|.+.|+++ ...|+ ...+..+..+..
T Consensus 297 ~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 297 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99875 3557788899999999999999999999986 55564 455665555443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.7e-19 Score=166.20 Aligned_cols=359 Identities=12% Similarity=0.068 Sum_probs=261.9
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHH
Q 038936 14 ALQILHQIS-HPSPSIYSSLIQFCRQ----NRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAK----CGNISDAQTLF 84 (476)
Q Consensus 14 A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 84 (476)
+++.++... ..++..+..+...+.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 345555543 7788899999998888 899999999999999875 67788888899988 89999999999
Q ss_pred HHccc-ccchHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-CcchHHHHHHHHHh----cCChhHHHHHHHHHHhccC
Q 038936 85 DEMQE-RDVCSYNTMISGFTK----GGSLEQARNLFDEMPQR-DNFSWTAMISGYVR----YNQPIEALDLYRMMQNFEN 154 (476)
Q Consensus 85 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 154 (476)
++..+ .++..+..|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|++.|++..+ .
T Consensus 103 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~- 180 (490)
T 2xm6_A 103 KKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-Q- 180 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T-
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C-
Confidence 99876 466788888888888 88999999999987765 66678888888887 7899999999999986 3
Q ss_pred CCCCchHHHHHHHHHHh----hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhhccc-ch
Q 038936 155 SVSNKFTLSSVLSAVSA----IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK----CGSINEARQIFDKMVDR-DV 225 (476)
Q Consensus 155 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~ 225 (476)
.+...+..+...+.. .++.++|.+.++...+.| +...+..+...|.. .+++++|..+|++..+. ++
T Consensus 181 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 181 --GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred --CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 356677777777777 789999999999998876 34567778888876 88999999999998654 55
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-----ccHHHHHHHHHHHHHhCCCCchh
Q 038936 226 VSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-----AAEELGKQVHGYMTRIGYDPYSF 296 (476)
Q Consensus 226 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ 296 (476)
..+..+...|.. .+++++|..+|++..+.| +...+..+...+... +++++|...++...+.+ +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 677778888887 899999999999998765 344555566666655 78888888888777654 223
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc---
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH--- 373 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 373 (476)
.+..+...|...|. .+++++|++.|++..+.| +...+..+...|..
T Consensus 330 a~~~lg~~y~~~g~----------------------------~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 330 AQANLGAIYFRLGS----------------------------EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp HHHHHHHHHHHSCC----------------------------HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCCC----------------------------cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 33444444443330 014455555555555542 34444445555554
Q ss_pred -cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhhHHHHHhhC
Q 038936 374 -AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGRFHEAEDVISKM 423 (476)
Q Consensus 374 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 423 (476)
.+++++|.++|+++.+. + ++..+..++.+|.+ .+++++|.+.|+++
T Consensus 379 ~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 55666666666665542 2 34445555555555 55666666666554
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.1e-18 Score=165.38 Aligned_cols=410 Identities=10% Similarity=0.067 Sum_probs=272.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMIS 100 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 100 (476)
+.+...|..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|+.+.+ |+...|...+.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 567778888887 477888999999999888863 44667788888888888899999999988775 56566666664
Q ss_pred HH-HhcCCHHHHHH----HHhcCCC------CCcchHHHHHHHHHh---------cCChhHHHHHHHHHHhccCCCCCch
Q 038936 101 GF-TKGGSLEQARN----LFDEMPQ------RDNFSWTAMISGYVR---------YNQPIEALDLYRMMQNFENSVSNKF 160 (476)
Q Consensus 101 ~~-~~~g~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (476)
.. ...|+.++|.+ +|+.... .+...|...+....+ .|++++|..+|++... .+..+...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 33 34566666554 5554321 234556666665544 5677777778777765 21111112
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh------c-------ccc---
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM------V-------DRD--- 224 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~-------~~~--- 224 (476)
.|..........+. . +...++. .+.+++..|..++... . .|+
T Consensus 167 ~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22221111000000 0 0000000 1223445555544431 1 111
Q ss_pred -----hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-------cccHH-------
Q 038936 225 -----VVSWTAMIGRYFQE----GRR----EEGFALFSELIKSGIRPNAFTFAGVLNACAD-------HAAEE------- 277 (476)
Q Consensus 225 -----~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------- 277 (476)
...|...+...... ++. +++..+|++.+... +.+...|......+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 12344443322221 222 36777888887753 4456666666666654 67776
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC-h-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD-L-VSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|++++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888988888632355677888888889999999999999988764 43 2 478888888889999999999999998
Q ss_pred HcCCCCcHHHHHHHHHH-HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----CCCCc
Q 038936 354 KSGTQPDHIVFVGVLTA-CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----PMKPD 428 (476)
Q Consensus 354 ~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 428 (476)
+.. +.+...+...+.. +...|++++|..+|+++.+.. +.++..|..++..+.+.|+.++|..+|+++ +..|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 853 2233333333222 336899999999999999763 456788999999999999999999999986 22343
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 429 --KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 429 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
...|...+......|+.+.+..+++++++..|+
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 448888888888899999999999999999885
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.1e-17 Score=164.64 Aligned_cols=406 Identities=11% Similarity=0.074 Sum_probs=293.1
Q ss_pred hhhhhhcCCHHHHHHHHHhcC-C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 2 IDILCNQRRLKEALQILHQIS-H-----PSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
+++|...|.+.+|+++++++. . .+....+.++....+. +..+..++.+.+... + ...+...+...|
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNE 1063 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCC
Confidence 567888899999999999885 2 3445666677666666 556666666665422 1 233667788899
Q ss_pred ChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 038936 76 NISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 76 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
.+++|..+|++.... ....+.+ +-..|++++|.++.++.. ++.+|..+..++...|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 999999999996421 1122222 227788999999988773 4678889999999999999999998654
Q ss_pred CCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHH
Q 038936 156 VSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRY 235 (476)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 235 (476)
.|...|..++.++.+.|+++++.+++...++.. ++....+.++.+|.+.+++++...+. ..++...|..+...|
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 456778889999999999999999998887765 33333345888899998888655443 345666677788899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999885 37888888999999999999998875 44577888888888999999998
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh--ccCchhhHHHHHHHHHHhcCC
Q 038936 316 KVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT--HAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~ 393 (476)
..... ...++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...++ +.++..++.+.|..-. .+
T Consensus 1271 ~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni 1345 (1630)
T 1xi4_A 1271 MCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NI 1345 (1630)
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---cc
Confidence 87765 44566677788899999999999999998887643 223345555555554 3445555555554332 34
Q ss_pred CC------ChhhHHHHHHHHHhcCChhhHHHHHhhC--------------CCCCcHHHHHHHHHHHHhcC----------
Q 038936 394 TY------TADHYACIVDLLARSGRFHEAEDVISKM--------------PMKPDKFLWASLLGGCRIHG---------- 443 (476)
Q Consensus 394 ~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~g---------- 443 (476)
++ +...|..++..|.+.|+++.|....-+. ....++..|...+.-|...+
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~ 1425 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 1425 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 44 4567888899999999999998443322 12346666666666666555
Q ss_pred -----ChHHHHHHHH
Q 038936 444 -----NLDLAKRAAE 453 (476)
Q Consensus 444 -----~~~~A~~~~~ 453 (476)
+.+++.++++
T Consensus 1426 l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1426 LSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhcCChHHHHHHHH
Confidence 6666666665
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.87 E-value=5e-20 Score=162.50 Aligned_cols=281 Identities=12% Similarity=0.096 Sum_probs=105.2
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 7 NQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (476)
+.|++++|.+++++++.| .+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457788999999888544 48889999999999999999888652 4677888888888888999999987776
Q ss_pred ccc--ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH
Q 038936 87 MQE--RDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164 (476)
Q Consensus 87 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (476)
..+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+. .|..
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~ 153 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGR 153 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------CHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHH
Confidence 654 4567788888899999999888877753 666788888888888999999988888763 4777
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHH
Q 038936 165 VLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEG 244 (476)
Q Consensus 165 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 244 (476)
+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHH
Confidence 777777777777777777766 256677777777777777777766555443 3333344566677777777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhc--cccHHHHHHHHHHHHHhCCCC------chhhHHHHHHHhhhcCChhhHHH
Q 038936 245 FALFSELIKSGIRPNAFTFAGVLNACAD--HAAEELGKQVHGYMTRIGYDP------YSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
..+++...... +.....|+-+...+++ .++..+..+.|. .+.+++| +...|..++..|...++++.|..
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 77777766543 3334444444444443 233333333332 1122232 34455556666666666665554
Q ss_pred HH
Q 038936 317 VF 318 (476)
Q Consensus 317 ~~ 318 (476)
..
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.1e-19 Score=158.60 Aligned_cols=287 Identities=13% Similarity=0.055 Sum_probs=178.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (476)
++..+..+...+...|++++|+++|+++.... +.+...+..++.++...|+++.|...++.+.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 55566677777777777777777777776522 2223334444445555555555555555555443 23344444455
Q ss_pred HHHHcCC-CHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH
Q 038936 202 DMYGKCG-SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK 280 (476)
Q Consensus 202 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 280 (476)
..+...| ++++|...|++. .+.. +.+...+..+...+...|+++.|.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a-------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKA-------------------------------TTLE-KTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHH-------------------------------HTTC-TTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHH-------------------------------HHhC-CccHHHHHHHHHHHHHccCHHHHH
Confidence 5555555 555555555544 4332 222333444444444445555555
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 038936 281 QVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSG- 356 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 356 (476)
..++.+.+.. +.+...+..+...|...|++++|...++++.+ .+...+..+...+...|++++|+..++++.+..
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 5554444443 22333444455555556666666666555443 345667778888888888888888888887642
Q ss_pred -------CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-
Q 038936 357 -------TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP- 427 (476)
Q Consensus 357 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 427 (476)
.+.+..++..+..++...|++++|...++++.+. .+.+...+..++.++.+.|++++|.+.++++ ...|
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 1334568888899999999999999999999875 3456778899999999999999999999996 5555
Q ss_pred cHHHHHHHHHHH-HhcCChH
Q 038936 428 DKFLWASLLGGC-RIHGNLD 446 (476)
Q Consensus 428 ~~~~~~~l~~~~-~~~g~~~ 446 (476)
+...+..+..++ ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 566777888777 4456644
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=9.2e-20 Score=164.76 Aligned_cols=282 Identities=11% Similarity=0.053 Sum_probs=137.8
Q ss_pred hcCCHHHHHH-HHhcCCCC-------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhh
Q 038936 104 KGGSLEQARN-LFDEMPQR-------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 104 ~~g~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 175 (476)
..|++++|.. .+++.... +...+..+...+.+.|++++|+..|+++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------------ 92 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ------------------------ 92 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------
Confidence 3456666665 55544321 233455555666666666666666666554
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 176 RLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELI 252 (476)
Q Consensus 176 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 252 (476)
.. +.+..++..++..+...|++++|+..|+++.+ .+..++..+...+...|++++|...++++.
T Consensus 93 ------------~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 93 ------------QD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ------------SC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 33444555566666666666666666665533 234456666666666666666666666666
Q ss_pred HcCCCCCHhhHHH---------------HHHHHhccccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHH
Q 038936 253 KSGIRPNAFTFAG---------------VLNACADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKK 316 (476)
Q Consensus 253 ~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 316 (476)
+... .+...+.. .+..+...|+++.|...++.+.+..... +..+
T Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------------------- 219 (368)
T 1fch_A 160 RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV------------------- 219 (368)
T ss_dssp HTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH-------------------
T ss_pred HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH-------------------
Confidence 5431 11111111 1222225566666666666665543110 2334
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 317 VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+..+...|...|++++|+..++++.+.. +.+..++..++..+...|++++|+..++++.+. .+.+
T Consensus 220 ------------~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~ 284 (368)
T 1fch_A 220 ------------QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY 284 (368)
T ss_dssp ------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 4444444555555555555555554432 223344445555555555555555555555443 1233
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKM-PMKP------------DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
...+..++.+|.+.|++++|...|+++ ...| ...+|..++.++...|++++|..++++.++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 444555555555555555555555543 1111 134555555556666666666555554443
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.1e-18 Score=151.14 Aligned_cols=258 Identities=10% Similarity=-0.005 Sum_probs=209.7
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccch----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDV----VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAE 276 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (476)
++-....|+++.|+..++.+...++ .....+..+|...|+++.|...++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 3445667999999999988755433 2345567899999999999886654 2 356777888888899999999
Q ss_pred HHHHHHHHHHHHhCC-CCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 277 ELGKQVHGYMTRIGY-DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
+.|.+.++.+...+. |.++..+..+..++...|++++|+..+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999988764 44566677778999999999999999999 567788999999999999999999999999986
Q ss_pred CCCCcHHHH---HHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHH
Q 038936 356 GTQPDHIVF---VGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKF 430 (476)
Q Consensus 356 ~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 430 (476)
. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.|+++ ...| +..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 554321 12223344569999999999999986 4678888999999999999999999999996 4445 677
Q ss_pred HHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCchhHHH
Q 038936 431 LWASLLGGCRIHGNLDL-AKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~ 468 (476)
++..++..+...|+.++ +.++++++++++|+++.+...
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 89999999999999876 678999999999999876553
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.7e-17 Score=157.24 Aligned_cols=392 Identities=9% Similarity=0.080 Sum_probs=235.3
Q ss_pred hhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCChHHH
Q 038936 5 LCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY-AKCGNISDA 80 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 80 (476)
+.+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|++++... |++..|...+... ...|+.+.|
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhH
Confidence 356899999999999984 6788899999999999999999999999999864 6777777777533 456888777
Q ss_pred HH----HHHHccc------ccchHHHHHHHHHHh---------cCCHHHHHHHHhcCCCC-Cc---chHHHHHHHHHhcC
Q 038936 81 QT----LFDEMQE------RDVCSYNTMISGFTK---------GGSLEQARNLFDEMPQR-DN---FSWTAMISGYVRYN 137 (476)
Q Consensus 81 ~~----~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~-~~---~~~~~l~~~~~~~~ 137 (476)
.+ +|+.... ++...|...+....+ .|+++.|..+|++..+. .. ..|..........|
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 65 6666532 245677777776654 78999999999998762 11 12222222111111
Q ss_pred ChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHH------HHcC---CCch--------HHHHHHH
Q 038936 138 QPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYI------MRTG---FDSD--------EVVWSAL 200 (476)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l 200 (476)
. ..+..++. ...+++..|..++... .+.. ++|+ ...|...
T Consensus 180 ~-~~~~~~l~----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 180 I-HLAKKMIE----------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp H-HHHHHHHH----------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred h-hHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 0 00000000 0123333333333321 1110 1222 1233333
Q ss_pred HHHHHcC----CCH----HHHHHHHHhhcc---cchhhHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcC
Q 038936 201 SDMYGKC----GSI----NEARQIFDKMVD---RDVVSWTAMIGRYFQ-------EGRRE-------EGFALFSELIKSG 255 (476)
Q Consensus 201 ~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~ 255 (476)
+...... ++. +++..+|++... .++..|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 3222111 121 245555655543 234455555555554 46655 6666666665421
Q ss_pred CCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc-hhhHHHHHHHhhhcCChhhHHHHHccCCCCC---hhhHHH
Q 038936 256 IRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPY-SFAASALVHMYSKCGNVENSKKVFNGMPRPD---LVSWTS 331 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 331 (476)
.+.+...+..++..+.+.|+++.|..+++.+.+.. +.+ ...|..++..+.+.|++++|..+|++..+.. ...|..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 22345555566666666677777777777666642 112 2356666666666677777777776665421 122222
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHH
Q 038936 332 LIAG-YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDLLA 408 (476)
Q Consensus 332 l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 408 (476)
.+.. +...|++++|..+|++.++.. +.+...+..++..+.+.|+.++|..+|+++......+|+ ...|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2211 335788888888888887753 235667777888888888888888888888865333332 336777777777
Q ss_pred hcCChhhHHHHHhhC
Q 038936 409 RSGRFHEAEDVISKM 423 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~ 423 (476)
+.|+.+.+.++.+++
T Consensus 475 ~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 475 NIGDLASILKVEKRR 489 (530)
T ss_dssp HSSCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 888888888887775
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.3e-16 Score=157.15 Aligned_cols=367 Identities=13% Similarity=0.098 Sum_probs=264.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHccc-c-----cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQE-R-----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGY 133 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 133 (476)
++.--......|...|.+.+|+++++++.- + +...-+.++...++. +..+..+..+++..-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 334445667888899999999999998762 2 224455566666666 5566666666655333 44477788
Q ss_pred HhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHH-HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHH
Q 038936 134 VRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAV-SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINE 212 (476)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (476)
...|.+++|..+|++... +...+..+ ...+++++|.++.++. .++.+|..+..++...|++++
T Consensus 1060 i~lglyEEAf~IYkKa~~----------~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV----------NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC----------HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 889999999999987632 12212222 2678888888888754 346678889999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 213 ARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 213 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
|+..|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.+..+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 99999765 666778888999999999999999998877754 33333345777888888887544442 1 3
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACT 372 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (476)
++...+..+...|...|++++|..+|..+ ..|..+..+|++.|++++|++.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45556667888899999999999999885 48888999999999999999988876 34577888888888
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc--CChHHH
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH--GNLDLA 448 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~A 448 (476)
..|++..|..+... +..+++.+..++..|.+.|.+++|+++++.. +..| ....|..+...+.+. ++..++
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 88888888776543 2335556778888888888888888888774 4444 334565555555544 677777
Q ss_pred HHHHHHHHHcCC-----CCchhHHHHHHhhh
Q 038936 449 KRAAEALFEIEP-----ENPATYVTMANIYA 474 (476)
Q Consensus 449 ~~~~~~~~~~~p-----~~~~~~~~l~~~y~ 474 (476)
.+.|..-..+.| ++...|..+..+|.
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 777777766666 67777777777764
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.3e-19 Score=159.85 Aligned_cols=278 Identities=13% Similarity=0.103 Sum_probs=139.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhc
Q 038936 38 QNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDE 117 (476)
Q Consensus 38 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 117 (476)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|.+.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567899999999988 2345899999999999999999999976 46777999999999999999999998887
Q ss_pred CCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHH
Q 038936 118 MPQ--RDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEV 195 (476)
Q Consensus 118 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 195 (476)
..+ +++.+.+.++.+|.+.|++.++.++++ .|+..++..+...|...|.++.|...|..+ .
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ----------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 765 356788999999999999999988874 367779999999999999999999999876 3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA 275 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (476)
.|..++.++.+.|++++|++.++++ .++.+|..++.+|+..|+++.|......+. ..|+ -...++..|.+.|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCC
Confidence 6889999999999999999999999 478999999999999999999966554422 2333 35568889999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc--CChhhHHHHHccCCC--------CChhhHHHHHHHHHhcCChHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKC--GNVENSKKVFNGMPR--------PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A 345 (476)
++++..+++...... +....+|+-+..+|++- +++.+.++.|..-.. .+...|..++..|...++++.|
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999999998776 66677777777777654 566777777776554 3567899999999999999999
Q ss_pred HHH
Q 038936 346 LEY 348 (476)
Q Consensus 346 ~~~ 348 (476)
...
T Consensus 302 ~~t 304 (449)
T 1b89_A 302 IIT 304 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.2e-19 Score=162.32 Aligned_cols=265 Identities=14% Similarity=0.077 Sum_probs=199.1
Q ss_pred cCCCHHHHHH-HHHhhcc--c-----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHH
Q 038936 206 KCGSINEARQ-IFDKMVD--R-----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277 (476)
Q Consensus 206 ~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (476)
..|++++|.. .+++... + +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7775532 1 23456677777888888888888888877764 445667777777777888888
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC-hhhHHH---------------HHHHHHhc
Q 038936 278 LGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD-LVSWTS---------------LIAGYAQN 339 (476)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~---------------l~~~~~~~ 339 (476)
.|...++.+.+.. +.+..++..+..+|...|++++|...++++.+ |+ ...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888877765 55667777777888888888888887776653 21 111111 13333488
Q ss_pred CChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 340 GMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
|++++|+..++++.+..... +..++..++..+...|++++|+..++++... .+.+...+..++.++.+.|++++|++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999864221 4788899999999999999999999999975 35567889999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------chhHHHHHHhhh
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN-----------PATYVTMANIYA 474 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~y~ 474 (476)
.++++ ...| +...+..++.++...|++++|...+++++++.|++ +.+|..|+.+|.
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 99996 3334 67789999999999999999999999999999988 789999998875
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-18 Score=160.61 Aligned_cols=379 Identities=9% Similarity=0.001 Sum_probs=220.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHccc-----------c-cchHHHHHHHHHHhcCCHHHHHHHHhcCCC-------
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQE-----------R-DVCSYNTMISGFTKGGSLEQARNLFDEMPQ------- 120 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 120 (476)
....|+.+...+...|++++|++.|++..+ + ...+|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888888888888877642 1 235688888888889998888887776532
Q ss_pred C----CcchHHHHHHHHHhc--CChhHHHHHHHHHHhccCCCCCc-hHHHHHHHHH---HhhhhhhhHHHHHHHHHHcCC
Q 038936 121 R----DNFSWTAMISGYVRY--NQPIEALDLYRMMQNFENSVSNK-FTLSSVLSAV---SAIQCLRLGKEIHGYIMRTGF 190 (476)
Q Consensus 121 ~----~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 190 (476)
+ .+.++.....++... +++++|++.|++.... .|+. ..+..+..++ ...++.+.|.+.++..++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 233455555555544 4688999999988863 3333 3333333333 33455677888888877665
Q ss_pred CchHHHHHHHHHHHHc----CCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 038936 191 DSDEVVWSALSDMYGK----CGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTF 263 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (476)
+.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...|++++|...+.+..+.. +.+..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4445555555544443 4567788888887643 345567778888888888888888888887754 3344455
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcC
Q 038936 264 AGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNG 340 (476)
Q Consensus 264 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 340 (476)
..+...+...+....+.. . ..........+.++.|...+++..+ .+...+..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhHH----------H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 554444432211110000 0 0001111112335666766666543 45567888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH--HHHHHHH-HHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHI--VFVGVLT-ACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
++++|+..|++.++....|... .+..+.. .....|+.++|++.|+++.+ +.|+....... ...+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHH
Confidence 9999999999999865433322 2333332 23567999999999999885 35543222222 22334
Q ss_pred HHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 418 DVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 418 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+++++. ...| +..+|..++..+...|++++|++.|+++++++|.+|.+...+|.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 444443 2233 66789999999999999999999999999999999988877763
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=4.8e-19 Score=159.82 Aligned_cols=243 Identities=11% Similarity=0.034 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444432 2233444444444444455555555554444443 3334444445555555
Q ss_pred cCChhhHHHHHccCCC--C-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhc
Q 038936 308 CGNVENSKKVFNGMPR--P-----------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PDHIVFVGVLTACTH 373 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 373 (476)
.|++++|...|+++.+ | ....+..+...+...|++++|+..++++.+.... ++..++..++..+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 5555555555544432 1 1233445678889999999999999999986522 157788899999999
Q ss_pred cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
.|++++|++.++++.+. .+.+..++..++.+|.+.|++++|++.|+++ ...| +..++..++.++...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999975 3556788999999999999999999999986 4444 577899999999999999999999
Q ss_pred HHHHHHcCCC------------CchhHHHHHHhhh
Q 038936 452 AEALFEIEPE------------NPATYVTMANIYA 474 (476)
Q Consensus 452 ~~~~~~~~p~------------~~~~~~~l~~~y~ 474 (476)
+++++++.|+ +..++..|+.++.
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 9999999887 3677888887764
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=4.4e-18 Score=153.53 Aligned_cols=194 Identities=14% Similarity=0.163 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-Hh-----
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN-AF----- 261 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----- 261 (476)
+.+..++..++..+...|++++|+..|+++.+ .+..++..+..+|...|++++|...++++.+.. |+ ..
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 173 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK 173 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhh
Confidence 34455666777777777777777777777643 234566777777777777777777777776643 22 11
Q ss_pred -----hHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--chhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHH
Q 038936 262 -----TFAGVLNACADHAAEELGKQVHGYMTRIGYDP--YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTS 331 (476)
Q Consensus 262 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 331 (476)
.+..+...+...|++++|...++++.+.. +. +..++..+...|...|++++|...|+++.+ .+..+|..
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 252 (365)
T 4eqf_A 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252 (365)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 12223455666677777777777666653 22 344444444444444444444444443331 22334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
+..+|...|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444444432 1123334444444444444444444444444
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.2e-18 Score=154.59 Aligned_cols=276 Identities=9% Similarity=0.000 Sum_probs=163.0
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHH
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRY 235 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 235 (476)
...+......+...|++++|..+++.+.+.. +.+...+..++..+...|++++|...++++.+ .+...+..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445666666777777777777777776654 44556666677777777777777777777643 2345566667777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH-HH-HhhhcCChhh
Q 038936 236 FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL-VH-MYSKCGNVEN 313 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 313 (476)
...|++++|...++++.+.. +.+...+..+...+ |+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777776653 22222222220000 000000001 11 2444444555
Q ss_pred HHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 314 SKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 314 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..++..+...|++++|.+.++++.+.
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5554444432 234556666666667777777777777766653 234556666777777777777777777777654
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-------------cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-------------DKFLWASLLGGCRIHGNLDLAKRAAEALF 456 (476)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 456 (476)
.+.+...+..++.+|.+.|++++|.+.++++ ...| +...|..++.++...|++++|...+++++
T Consensus 236 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 --NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2345566677777777777777777777664 2122 35567777777777788877777777766
Q ss_pred HcCCC
Q 038936 457 EIEPE 461 (476)
Q Consensus 457 ~~~p~ 461 (476)
+..|+
T Consensus 314 ~~~~~ 318 (327)
T 3cv0_A 314 EPFAK 318 (327)
T ss_dssp HHHHH
T ss_pred Hhcch
Confidence 65443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.4e-17 Score=146.13 Aligned_cols=275 Identities=11% Similarity=-0.040 Sum_probs=209.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHH
Q 038936 122 DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALS 201 (476)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 201 (476)
+...+..+...+...|++++|+.+|+++... .+.+...+..+..++...|+++.|.+.++.+.+.. +.+..++..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 4456788889999999999999999999862 23466778888899999999999999999999875 55778899999
Q ss_pred HHHHcCCCHHHHHHHHHhhcccchh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH--HHhccccH
Q 038936 202 DMYGKCGSINEARQIFDKMVDRDVV---SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN--ACADHAAE 276 (476)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 276 (476)
..+...|++++|...++++.+.++. .+..+.. ..|+......+.. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999998654332 2222210 0111122222212 25667777
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLL 353 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 353 (476)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|+..++++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777764 44666777777888888888888888877653 356678889999999999999999999998
Q ss_pred HcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 354 KSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----------TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.. +.+..++..+...+...|++++|.+.++++........ +...+..++.++.+.|++++|..++++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 864 34577888899999999999999999999987521100 4678889999999999999999999875
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.7e-16 Score=145.42 Aligned_cols=368 Identities=11% Similarity=0.001 Sum_probs=243.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHccc-----
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSS-----G---FKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE----- 89 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 89 (476)
......||.+..++...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...++++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999987652 1 122356788899999999999999999988753
Q ss_pred ------ccchHHHHHHHHHHhc--CCHHHHHHHHhcCCC--C-CcchHHHHHHH---HHhcCChhHHHHHHHHHHhccCC
Q 038936 90 ------RDVCSYNTMISGFTKG--GSLEQARNLFDEMPQ--R-DNFSWTAMISG---YVRYNQPIEALDLYRMMQNFENS 155 (476)
Q Consensus 90 ------~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 155 (476)
....++..+..++... +++++|...|++..+ | ++..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1234666666666554 579999999998764 3 44455555444 445688899999999888632
Q ss_pred CCCchHHHHHHHHH----HhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhH
Q 038936 156 VSNKFTLSSVLSAV----SAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSW 228 (476)
Q Consensus 156 ~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 228 (476)
+.+...+..+...+ ...++++.|.+.++...... +.+..++..+...|...|++++|+..+++..+. +..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 22334444444333 34577899999999988775 566778889999999999999999999998653 34456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC 308 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (476)
..+..+|...+... .... .. .........+..+.|...++...+.. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 66666654321111 1100 00 00011122344677888888887775 56667788889999999
Q ss_pred CChhhHHHHHccCCC--CChh----hHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHH
Q 038936 309 GNVENSKKVFNGMPR--PDLV----SWTSLIA-GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 381 (476)
|++++|+..|++..+ ++.. .+..+.. .+...|++++|+..|++.++. .|+..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 999999999987753 3322 2233332 245789999999999999984 45543322 2233445
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 382 QYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+++++.... .|.+..++..++.+|...|++++|++.|+++
T Consensus 417 ~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 417 KIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566666654 3567788999999999999999999999996
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=8.7e-18 Score=145.39 Aligned_cols=245 Identities=10% Similarity=0.007 Sum_probs=157.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccc
Q 038936 196 VWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN-AFTFAGVLNACADHA 274 (476)
Q Consensus 196 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 274 (476)
....+.++|...|+++.|+..++....++..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 3344566666677777766666554334445566666666666677777777777666554343 334444445666677
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhH---HHHHHHHHhcCChHHHHHHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSW---TSLIAGYAQNGMPDKALEYF 349 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~A~~~~ 349 (476)
++++|...++. +.+...+..++.++.+.|++++|...|+++.+ |+.... ...+..+...|++++|+.+|
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77777776665 45556666667777777777777777776653 332211 11223344558889999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh-HHHHHhhC-CCCC
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE-AEDVISKM-PMKP 427 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~~p 427 (476)
+++.+.. +.+...++.+..++...|++++|.+.++++.+. .|.+..++..++..+...|+.++ +.++++++ ...|
T Consensus 190 ~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 190 QEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9988873 457778888888888999999999999988875 35567778888888888888876 56777775 4455
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH
Q 038936 428 DKFLWASLLGGCRIHGNLDLAKRAA 452 (476)
Q Consensus 428 ~~~~~~~l~~~~~~~g~~~~A~~~~ 452 (476)
+..... ....+.+.++++..-|
T Consensus 267 ~~~~~~---d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 267 SHPFIK---EYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHH---HHHHHHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHHHHHHHc
Confidence 443222 2233444555554433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.4e-17 Score=142.28 Aligned_cols=234 Identities=10% Similarity=-0.019 Sum_probs=162.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC--Cc----hhhHHHH
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD--PY----SFAASAL 301 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 301 (476)
+..+...+...|++++|...|++..+.. .+...+..+...+...|+++.|...++.+.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444455555555555555544443 44444444445555555555555555554443210 01 3455555
Q ss_pred HHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh
Q 038936 302 VHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK 379 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 379 (476)
...+...|++++|...|+++.+ |+ ...+...|++++|+..++++.... +.+...+..++..+...|++++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 6666666666666666665543 33 234666778899999999988853 2345577888888999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 380 GLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
|...++++.+. .+.+...+..++.++.+.|++++|++.++++ ...| +...|..++.++...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999875 3556788899999999999999999999986 3334 577899999999999999999999999999
Q ss_pred cC------CCCchhHHHHHHhh
Q 038936 458 IE------PENPATYVTMANIY 473 (476)
Q Consensus 458 ~~------p~~~~~~~~l~~~y 473 (476)
+. |++..++..|..++
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHTT
T ss_pred hChhhcCCCchHHHHHHHHHhh
Confidence 99 98888888887654
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=3.5e-17 Score=141.01 Aligned_cols=243 Identities=12% Similarity=0.008 Sum_probs=136.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHh
Q 038936 197 WSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPN--AFTFAGVLNACA 271 (476)
Q Consensus 197 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 271 (476)
+......+...|++++|+..|++..+. +...+..+..++...|++++|...+++..+.+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344556666666666666666666332 233566666666666666666666666665321111 112455555555
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
..|+++.|...++...+.. +.+... +..+...|...|++++|+..+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~-------------------------------~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDM-------------------------------YGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHH-------------------------------HHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHH-------------------------------HHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666666666655543 233344 44444445555555555555555
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hhhHHHHHhhC----C
Q 038936 352 LLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR---FHEAEDVISKM----P 424 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~ 424 (476)
..+.. +.+...+..+...+...+++++|.+.++++.+. .+.+...+..++.++...|+ +++|...++++ .
T Consensus 134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 44431 122333433442222333555555555555543 12234445555555555555 55555555543 1
Q ss_pred CCCc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 425 MKPD------KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 425 ~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
..|+ ...|..++..+...|++++|...++++++++|+|+.++..+..+..
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 1122 2467788888999999999999999999999999999998877653
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=3e-16 Score=140.21 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=189.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-HHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 226 VSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA-EELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
..|..+...+...|++++|+..++++++.. +-+...|..+...+...|+ +++|+..++++.+.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 356666677777777777777777777654 3345666667777777775 788888887777775 5567777788888
Q ss_pred hhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCchhhH
Q 038936 305 YSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKG 380 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 380 (476)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888887774 456788888999999999999999999999865 3356778888888888 5665777
Q ss_pred -----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhhHHHHHhhCCCCC-cHHHHHHHHHHHHhcC--------C
Q 038936 381 -----LQYFHSIKEKHGLTYTADHYACIVDLLARSG--RFHEAEDVISKMPMKP-DKFLWASLLGGCRIHG--------N 444 (476)
Q Consensus 381 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g--------~ 444 (476)
++.+++++.. .+-+...|..++.++.+.| ++++|++.+.++...| +...+..++..|...| +
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4888888864 3446678888898998888 6899999888875445 5567888888888764 3
Q ss_pred -hHHHHHHHHHH-HHcCCCCchhHHHHHHhhh
Q 038936 445 -LDLAKRAAEAL-FEIEPENPATYVTMANIYA 474 (476)
Q Consensus 445 -~~~A~~~~~~~-~~~~p~~~~~~~~l~~~y~ 474 (476)
+++|+++|+++ ++++|.+...|..++..+.
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 58999999999 9999999999999988765
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=7.4e-16 Score=142.21 Aligned_cols=373 Identities=12% Similarity=0.093 Sum_probs=182.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHcccccchHHHHHHHHHHhcC--
Q 038936 32 LIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI---SDAQTLFDEMQERDVCSYNTMISGFTKGG-- 106 (476)
Q Consensus 32 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-- 106 (476)
+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|...|+...+.++..+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455566677777777777776655 333444455555555655 66666666665555555555555444433
Q ss_pred ---CHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 038936 107 ---SLEQARNLFDEMPQR-DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIH 182 (476)
Q Consensus 107 ---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 182 (476)
++++|...|++..++ ++..+..+...|...+..+++.+ +.+.+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~---------------------------------a~~~~ 132 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN---------------------------------AQQQI 132 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC---------------------------------HHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH---------------------------------HHHHH
Confidence 455566655555433 33445555555544433222222 22222
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCC----CHHHHHHHHHhhcccchhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcC
Q 038936 183 GYIMRTGFDSDEVVWSALSDMYGKCG----SINEARQIFDKMVDRDVVSWTAMIGRYFQEG---RREEGFALFSELIKSG 255 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 255 (476)
......|. ......+...|...+ +.+.+..+++.....++..+..+...|...| +.++|+..|++..+.|
T Consensus 133 ~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 133 SQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 22222332 123334445555444 3344444555555555556666666666666 6667777777766665
Q ss_pred CCCCHhhHHHHHHHHhcc----ccHHHHHHHHHHHHHhCCCCchhhHHHHHHH-h--hhcCChhhHHHHHccCCC-CChh
Q 038936 256 IRPNAFTFAGVLNACADH----AAEELGKQVHGYMTRIGYDPYSFAASALVHM-Y--SKCGNVENSKKVFNGMPR-PDLV 327 (476)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~-~~~~ 327 (476)
.++...+..+...+... +++++|...++... . .++..+..+..+ | ...+++++|...|++..+ .++.
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444434444444333 56667777776665 2 233344444444 2 346667777777766553 3455
Q ss_pred hHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChh
Q 038936 328 SWTSLIAGYAQNG-----MPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
.+..+...|. .| ++++|+..|++.. .| +......+...|.. ..++++|..+|++..+. | +..
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~ 355 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNS 355 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTT
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHH
Confidence 5666666665 34 6777777777665 22 44455555555544 33677777777776653 2 234
Q ss_pred hHHHHHHHHHh----cCChhhHHHHHhhCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 399 HYACIVDLLAR----SGRFHEAEDVISKMPMK--PDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 399 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
....|+.+|.. ..+.++|...|+.+... ++.......+......++..+|....++..+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45566666653 34667777777765222 2222222222222223456666666665554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=8.4e-16 Score=141.83 Aligned_cols=370 Identities=10% Similarity=-0.008 Sum_probs=211.8
Q ss_pred hhhhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----
Q 038936 4 ILCNQRRLKEALQILHQIS-HPSPSIYSSLIQFCRQNRAL---EEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG---- 75 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 75 (476)
.+.+.|++++|+++|+++. ..++.++..+...+...|++ ++|..+|++..+. ++..+..+...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 4678899999999999985 45666777777777778888 8999999998864 5566666776555555
Q ss_pred -ChHHHHHHHHHcccc-cchHHHHHHHHHHhcCCHHH---HHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 76 -NISDAQTLFDEMQER-DVCSYNTMISGFTKGGSLEQ---ARNLFDEMPQ-RDNFSWTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 76 -~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
++++|...|++..++ ++..+..|...|...+..++ +.+.+....+ .++.....+...|...+.++++.+....+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 788999999998764 55678888888887665444 3444443332 36677888888888888666655553333
Q ss_pred HhccCCCCCchHHHHHHHHHHhhh---hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcC----CCHHHHHHHHHhhcc
Q 038936 150 QNFENSVSNKFTLSSVLSAVSAIQ---CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC----GSINEARQIFDKMVD 222 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 222 (476)
.. .-...+...+..+...+...| +.++|.+.++...+.| +++...+..+...|... +++++|+.+|+....
T Consensus 168 ~~-~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 245 (452)
T 3e4b_A 168 CK-AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAP 245 (452)
T ss_dssp HH-HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGG
T ss_pred HH-HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcC
Confidence 32 112223336777777777777 8888888888888877 44555555566666554 688888888888773
Q ss_pred cchhhHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc-----cHHHHHHHHHHHHHhCCCCc
Q 038936 223 RDVVSWTAMIGR-Y--FQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHA-----AEELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 223 ~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 294 (476)
.++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|+... +.+
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~ 317 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GRE 317 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTC
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCC
Confidence 345566666666 3 45678888888888877765 3444444444444 33 6666666666655 223
Q ss_pred hhhHHHHHHHhhh----cCChhhHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHH
Q 038936 295 SFAASALVHMYSK----CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----NGMPDKALEYFELLLKSGTQPDHIVFV 365 (476)
Q Consensus 295 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 365 (476)
+.....+..+|.. ..++++|...|++..+ .++.....+...|.. ..++.+|..+|+...+.|. ++.....
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l 396 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA 396 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 3444445555544 2356666666655543 334445555555543 3455666666666665552 2222222
Q ss_pred HHHHHHhccCchhhHHHHHHHHH
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
..+......++..+|..+.++..
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH
Confidence 22222233344445555544444
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=3.9e-15 Score=128.22 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc-chhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR-DVVSWTAMIGRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLN 268 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (476)
..++..+...+...|++++|+..|++..++ +...+..+...|.. .+++++|...|++..+.+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~--------- 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y--------- 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C---------
Confidence 344445555555555555555555555433 22344444455555 555555555555554433 3
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh----cCChhhHHHHHccCCC-CChhhHHHHHHHHHh----c
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK----CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----N 339 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~ 339 (476)
+..+..+...|.. .+++++|...|++..+ .++..+..+...|.. .
T Consensus 74 --------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 74 --------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp --------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred --------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 3334444444444 5555555555554432 345566677777777 8
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cC
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SG 411 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 411 (476)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...++++.+. .+...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 88999999999988865 45566677777777 88999999999998864 245678888999998 99
Q ss_pred ChhhHHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhH
Q 038936 412 RFHEAEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 412 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
++++|++.++++....+...+..+...+.. .+++++|...++++++.+|+++..+
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999886222336677888888888 8999999999999999999764433
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=6.8e-16 Score=127.63 Aligned_cols=179 Identities=15% Similarity=0.052 Sum_probs=103.3
Q ss_pred CchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038936 293 PYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLT 369 (476)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (476)
++...+..+...+...|++++|...|++..+ .++..+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444445555555555555555555555443 233455555666666666666666666666543 223445555555
Q ss_pred HHhcc-----------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHH
Q 038936 370 ACTHA-----------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLG 437 (476)
Q Consensus 370 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 437 (476)
++... |++++|+..++++.+. .|.+...+..++.+|...|++++|+..|+++ ....+...+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 66666 6666666666666653 2334555666666666666666666666664 11145556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 6666666666666666666666666666666666554
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=2.8e-16 Score=132.83 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=144.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhh
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYS 306 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (476)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------- 87 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD---------------- 87 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Confidence 44455555555556666665555555432 2233444444444444555555555544444331
Q ss_pred hcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 307 KCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
..+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|.+.+++
T Consensus 88 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 88 ----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1245567777888888899999999999988864 34667788888889999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 387 IKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
+.+. .+.+...+..++.++.+.|++++|.+.++++ ... .+...+..++..+...|++++|...++++++++|+++.
T Consensus 151 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 151 AVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 8875 3456778889999999999999999999886 323 35778899999999999999999999999999999999
Q ss_pred hHHHHHHhh
Q 038936 465 TYVTMANIY 473 (476)
Q Consensus 465 ~~~~l~~~y 473 (476)
++..++.+.
T Consensus 229 ~~~~~~~l~ 237 (243)
T 2q7f_A 229 ALHAKKLLG 237 (243)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHHH
Confidence 998887664
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=3.1e-15 Score=127.20 Aligned_cols=210 Identities=10% Similarity=0.001 Sum_probs=159.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4567777888888888888888888887764 3455666666667777777777777777666543 1
Q ss_pred hhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHH
Q 038936 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQY 383 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 383 (476)
.+...+..+...|...|++++|++.++++.+.+..| +...+..++..+...|++++|.+.
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233455666777777888888888888877632334 455677788888888999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 384 FHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK-PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
++++.+. .+.+...+..++.++...|++++|...++++ ... .+...+..+...+...|++++|.+.++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 9888865 2445777888899999999999999999886 333 35667888888899999999999999999999999
Q ss_pred CchhHHHH
Q 038936 462 NPATYVTM 469 (476)
Q Consensus 462 ~~~~~~~l 469 (476)
++.....+
T Consensus 242 ~~~~~~~l 249 (252)
T 2ho1_A 242 SLEYQEFQ 249 (252)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 88776544
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=1.2e-15 Score=126.02 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+++.+. .|.+...+..++.++
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 33444444444455555555555544443 34444444444555555555555555554432 122334444444444
Q ss_pred HhcCChhhHHHHHhh
Q 038936 408 ARSGRFHEAEDVISK 422 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~ 422 (476)
.+.|++++|++.+++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 445555555444443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.7e-14 Score=124.11 Aligned_cols=230 Identities=9% Similarity=-0.019 Sum_probs=159.0
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--cchh----hHHHHH
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD--RDVV----SWTAMI 232 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l~ 232 (476)
...+......+...|+++.|...++..++.. +.+...+..+...+...|++++|+..+++..+ ++.. .|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778889999999999999999875 44556788899999999999999999999866 3333 378899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 233 GRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
..+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~----------------- 142 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP----------------- 142 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH-----------------
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH-----------------
Confidence 99999999999999999999865 3455677777777777777777777766665542 2222
Q ss_pred hHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc---hhhHHHHHHHHHH
Q 038936 313 NSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL---VDKGLQYFHSIKE 389 (476)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 389 (476)
..|..+...+...+++++|+..|+++.+.. +.+...+..+..++...|+ +++|...++++.+
T Consensus 143 --------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 143 --------------KVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 334444422223336677777777776643 2234555556666666666 6667777776665
Q ss_pred hcCCCCCh------hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 390 KHGLTYTA------DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 390 ~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.....|+. ..+..++..|.+.|++++|.+.++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43222332 45666777777777777777777765
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=4.8e-15 Score=123.55 Aligned_cols=211 Identities=11% Similarity=0.026 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
+..+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3445555555666666666666666555543 2234444444444555555555555554444332
Q ss_pred hhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHH
Q 038936 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
..+...+..+...+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|..
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 12445667777888888 889999999988887322333 5677788888999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 383 YFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK--PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
.++++.+. .+.+...+..++.++.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99998875 3445778888999999999999999999886 222 356667777777888999999999999999999
Q ss_pred CCCchhHHHHH
Q 038936 460 PENPATYVTMA 470 (476)
Q Consensus 460 p~~~~~~~~l~ 470 (476)
|+++.+...+.
T Consensus 213 p~~~~~~~~l~ 223 (225)
T 2vq2_A 213 PYSEELQTVLT 223 (225)
T ss_dssp TTCHHHHHHHC
T ss_pred CCCHHHHHHhc
Confidence 99988776654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=5.8e-15 Score=127.26 Aligned_cols=198 Identities=10% Similarity=-0.077 Sum_probs=119.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 339 (476)
+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 3333344444444444444444444432 23344444455555555555555555554442 2455666777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|+..++++.+.. |+.......+..+...|++++|...+++.... .+++... ..++..+...++.++|.+.
T Consensus 125 g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWG-WNIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTH-HHHHHHHTTSSCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHH-HHHHHHHHHhcCHHHHHHH
Confidence 88888888888877743 44444444444556667888888888777764 2333333 3366666777777778887
Q ss_pred HhhC-CCCCc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 038936 420 ISKM-PMKPD-----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATY 466 (476)
Q Consensus 420 ~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 466 (476)
++++ ...|+ ...+..++..+...|++++|...++++++.+|++...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 7774 33332 45677777788888888888888888888888776544
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=2.2e-12 Score=123.10 Aligned_cols=417 Identities=9% Similarity=0.041 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--c-cchHHHHHHHHHHhcCC---HHHHHHHHhc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--R-DVCSYNTMISGFTKGGS---LEQARNLFDE 117 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 117 (476)
+-...|+..+..+ +-|..+|..++..+...+.++.+..+|+.+.. | ....|...+..-.+.|+ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3344444444443 23566666666666666666666666666554 2 23445555555555555 6666666665
Q ss_pred CCC-----CCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHhccCC-CCCc-hHHHHHHHHHH---------hhh
Q 038936 118 MPQ-----RDNFSWTAMISGYVRYNQP--------IEALDLYRMMQNFENS-VSNK-FTLSSVLSAVS---------AIQ 173 (476)
Q Consensus 118 ~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~~-~~~~~ll~~~~---------~~~ 173 (476)
... +++..|...+....+.++. +...++|+.....-|. .|+. ..|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 543 3344455555444443332 2233555555443344 3332 33333333221 233
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHH---HHH----------HcCCCHHHHHHHHHhh------ccc-----------
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALS---DMY----------GKCGSINEARQIFDKM------VDR----------- 223 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~----------~~~~~~~~a~~~~~~~------~~~----------- 223 (476)
+.+.+..+|+..+......-..+|.... ... -...+++.|...+.++ ...
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 4555666666655321111122222111 110 0011233344444332 000
Q ss_pred ------c------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHH-HHH
Q 038936 224 ------D------VVSWTAMIGRYFQEG-------RREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGK-QVH 283 (476)
Q Consensus 224 ------~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 283 (476)
+ ...|...+.---..+ ..+.+..+|++.+..- +.....|......+...|+.+.|. .++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 122333333222221 1234556777777653 446667777777777788888886 999
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-------------CC------------hhhHHHHHHHHHh
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-------------PD------------LVSWTSLIAGYAQ 338 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~ 338 (476)
+..... +|.+...+...+....+.|++++|..+|+++.. |+ ...|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 888865 356666677788888889999999999887763 31 2357777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
.|+.+.|..+|.++++.-..+....|...+..-.+ .++.+.|..+|+..++.+ +.+...+...+......|+.+.|.
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999885111223344333332233 356999999999999863 456667788888889999999999
Q ss_pred HHHhhC-CCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 418 DVISKM-PMKP----DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 418 ~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
.+|+++ ...| ....|...+..-...|+.+.+..+.+++.+..|+++.+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 999996 3333 34588888888888999999999999999999987643
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.3e-15 Score=125.68 Aligned_cols=208 Identities=9% Similarity=0.005 Sum_probs=106.1
Q ss_pred HHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccc----------hhhHHHHHHHHHhc
Q 038936 169 VSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRD----------VVSWTAMIGRYFQE 238 (476)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~l~~~~~~~ 238 (476)
+...|+++.|...++..++.. .+..++..++..+...|++++|+..+++..+.+ ...+..+...+...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 333333333333333333333 344455556666666666666666666653311 34556666666777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHH
Q 038936 239 GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVF 318 (476)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (476)
|++++|...|++..+.. |+. ..+...|+++.|...++.+.... +.+...
T Consensus 93 ~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--------------------- 141 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEE--------------------- 141 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHH---------------------
T ss_pred ccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHH---------------------
Confidence 77777777777666642 332 23445566666666666665542 222333
Q ss_pred ccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChh
Q 038936 319 NGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
+..+...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..
T Consensus 142 ----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~ 208 (258)
T 3uq3_A 142 ----------ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVR 208 (258)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred ----------HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHH
Confidence 3344444445555555555555554432 223444444555555555555555555555543 123344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhh
Q 038936 399 HYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+..++.++.+.|++++|.+.+++
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555555555555555555554
No 50
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=152.15 Aligned_cols=128 Identities=11% Similarity=0.116 Sum_probs=109.2
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhc-------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 038936 190 FDSDEVVWSALSDMYGKCGSINEARQIFDKMV-------DRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFT 262 (476)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (476)
...-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997763 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 263 FAGVLNACADHAA-EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 263 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
|+.+|.++++.|+ .+.|.+++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999987 478899999999999999999999888766665444444333
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=7.6e-17 Score=153.99 Aligned_cols=122 Identities=11% Similarity=0.140 Sum_probs=78.9
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMP-------RPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGV 367 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 367 (476)
..+|+++|.+|++.|++++|..+|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455566666666666666666654432 366677777777777777777777777777777777777777777
Q ss_pred HHHHhccCch-hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHH
Q 038936 368 LTACTHAGLV-DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAE 417 (476)
Q Consensus 368 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 417 (476)
|.++++.|+. ++|.++|++|.++ |+.||..+|+.++....+.+-++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 7777777663 5666777777766 77777777776665555544333333
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=138.82 Aligned_cols=289 Identities=12% Similarity=0.026 Sum_probs=164.7
Q ss_pred CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------c
Q 038936 157 SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD---EVVWSALSDMYGKCGSINEARQIFDKMVDR---------D 224 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~ 224 (476)
+....+......+...|+++.|...++..++.+.... ..++..+...+...|++++|...+++..+. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556666777888888888888888877642211 356777888888888888888888776321 1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhcccc--------------------HHHH
Q 038936 225 VVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RPN----AFTFAGVLNACADHAA--------------------EELG 279 (476)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 279 (476)
...+..+...+...|++++|...+.+..+... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566777788888888888888877765310 011 2345555566666677 6666
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT 357 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 357 (476)
...+....+.. ..... ....++..+...|...|++++|+..+++..+...
T Consensus 167 ~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSLV----------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66665544320 00000 0112444555555566666666666655543210
Q ss_pred -CCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC-C---
Q 038936 358 -QPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM-P--- 424 (476)
Q Consensus 358 -~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 424 (476)
.++ ..++..+...+...|++++|...++++.....-.++ ..++..++..|...|++++|.+.++++ .
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 011 124555556666666666666666665542111111 334555666666666666666666554 0
Q ss_pred ---CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhHHHHHHhh
Q 038936 425 ---MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP------ENPATYVTMANIY 473 (476)
Q Consensus 425 ---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~y 473 (476)
..+ ...++..++..+...|++++|...+++++++.+ ....++..|+.+|
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 011 133555666666666777777777776666422 2234555555554
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=2.4e-14 Score=123.36 Aligned_cols=214 Identities=13% Similarity=0.028 Sum_probs=125.0
Q ss_pred cCChhHHHHHHHHHHhccCCC--CCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHH
Q 038936 136 YNQPIEALDLYRMMQNFENSV--SNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEA 213 (476)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 213 (476)
.|++++|++.|+++....... .+...+..+...+...|+++.|...++.+.+.. +.+..++..++..+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 456666666666666521111 123445555556666666666666666666553 44566677777777777777777
Q ss_pred HHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 038936 214 RQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG 290 (476)
Q Consensus 214 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 290 (476)
+..|+++.+ .+...+..+...+...|++++|...++++.+.. |+.......+..+...|+++.|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777777644 235566777777777777777777777776643 433333334444455677777777776666553
Q ss_pred CCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 291 YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPD-------LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
+++...+ .++..+...++.++|...++...+.+ ...+..+...|...|++++|...|+++.+
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333332 34555555555566666665555421 23455555555555555555555555555
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=3.6e-15 Score=136.75 Aligned_cols=272 Identities=12% Similarity=0.033 Sum_probs=157.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHH
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD---EVVWSALSDMYGKCGSINEARQIFDKMVDR---------DVVSWT 229 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 229 (476)
+..+...+...|+++.|...++.+++.+.... ..++..+...|...|++++|+..+++..+. ....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444455566666666666666655532111 134555566666666666666666555321 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHhhHHHHHHHHhcccc-----------------HHHHHHHHHHHH
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSG----I-RPNAFTFAGVLNACADHAA-----------------EELGKQVHGYMT 287 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~ 287 (476)
.+...|...|++++|...+.+..+.. - +....++..+...+...|+ ++.|...+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 55555666666666666665554321 0 0112233344444444444 444444433332
Q ss_pred HhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----
Q 038936 288 RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD---- 360 (476)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~---- 360 (476)
+. ...... .....+..+...|...|++++|+..+++..+.... ++
T Consensus 211 ~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 211 KL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 21 000000 11235666777788888888888888777653110 11
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC-C------CCC-c
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----TADHYACIVDLLARSGRFHEAEDVISKM-P------MKP-D 428 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 428 (476)
..++..+...+...|++++|.+.++++.....-.. ...++..++.+|...|++++|.+.++++ . ..+ .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 12667778888888888888888888775421111 1456777888888889998888888875 1 111 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 429 KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 429 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
..++..++..+...|++++|...+++++++.+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888888899999999999999887653
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=9.4e-14 Score=124.12 Aligned_cols=241 Identities=9% Similarity=0.034 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGR-REEGFALFSELIKSGIRPNAFTFAGVLNA 269 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (476)
...+..+...+...|++++|+..++++++. +...|+.+..++...|+ +++|+..|+++++.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456677777788888888888888887542 34567777888888886 888888888888765 4456677777777
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHh-cCChHHH
Q 038936 270 CADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQ-NGMPDKA 345 (476)
Q Consensus 270 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~A 345 (476)
+...|++++|+..++.+++.. +.+...|..+..++...|++++|+..|+++.+ .+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 888888888888888888875 56677788888888888888888888888774 356688888888888 5555777
Q ss_pred -----HHHHHHHHHcCCCCcHHHHHHHHHHHhccC--chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------
Q 038936 346 -----LEYFELLLKSGTQPDHIVFVGVLTACTHAG--LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG------- 411 (476)
Q Consensus 346 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 411 (476)
+..+++.++.. +-+...|..+...+...| ++++|++.++++ + ..+.+...+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 58888888854 234567888888888877 688999988887 3 34566778888999998874
Q ss_pred --ChhhHHHHHhhC--CCCCc-HHHHHHHHHHHH
Q 038936 412 --RFHEAEDVISKM--PMKPD-KFLWASLLGGCR 440 (476)
Q Consensus 412 --~~~~A~~~~~~~--~~~p~-~~~~~~l~~~~~ 440 (476)
.+++|+++++++ ...|. ...|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999987 56664 446666665554
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=8.2e-14 Score=118.34 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
...+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788899999999999999999999854 356678889999999999999999999998875 44667777788888
Q ss_pred hccccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHH
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKAL 346 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 346 (476)
...|++++|..+++.+.+.+..| +...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88889999988888887622222 334444444555555555555555544332 22334444444444455555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 347 EYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5554444432 12333344444444444445555444444443
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=3.6e-13 Score=115.80 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=152.6
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhhccc-chhhHHHHH
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK----CGSINEARQIFDKMVDR-DVVSWTAMI 232 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~ 232 (476)
+...+..+...+...|++++|.+.++...+.+ +...+..+...|.. .+++++|+..|++..+. ++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45667778888899999999999999999843 45677888999999 99999999999998654 567788899
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 038936 233 GRYFQ----EGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD----HAAEELGKQVHGYMTRIGYDPYSFAASALVHM 304 (476)
Q Consensus 233 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (476)
..|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 99999 999999999999998865 56677777777777 888899998888888765 33444455555
Q ss_pred hhh----cCChhhHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--
Q 038936 305 YSK----CGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-- 373 (476)
Q Consensus 305 ~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 373 (476)
|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.+ | ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCC
Confidence 554 5555555555554432 233444445555555 555555555555555432 1 3334444444444
Q ss_pred --cCchhhHHHHHHHHHH
Q 038936 374 --AGLVDKGLQYFHSIKE 389 (476)
Q Consensus 374 --~~~~~~a~~~~~~~~~ 389 (476)
.+++++|.+.|+++.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSCCSTTHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHH
Confidence 4555555555555543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.5e-14 Score=132.40 Aligned_cols=262 Identities=15% Similarity=0.085 Sum_probs=142.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHc----CCC-chHHHHHH
Q 038936 127 TAMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFD-SDEVVWSA 199 (476)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 199 (476)
......+...|++++|+..|+++....+..|. ...+..+...+...|+++.|...++..... +.+ ....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33445555555555555555555542111111 134445555555555666665555554322 212 22456777
Q ss_pred HHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHHHHHHhcCC--------------------hhHHHHHHHH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMIGRYFQEGR--------------------REEGFALFSE 250 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 250 (476)
+...+...|++++|...+++..+. + ..++..+...|...|+ +++|...+.+
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 888888888888888888877431 1 2367777888888888 8888888777
Q ss_pred HHHc----CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC-C----chhhHHHHHHHhhhcCChhhHHHHHcc
Q 038936 251 LIKS----GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD-P----YSFAASALVHMYSKCGNVENSKKVFNG 320 (476)
Q Consensus 251 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (476)
..+. +..| ...++..+...+...|+++.|...+++..+.... + ....+..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6542 1111 1234556666677777777777777776554110 1 112444555555555666555555554
Q ss_pred CCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 321 MPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 321 ~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
..+ ++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 11 234445555555555555555555555432100 00 22444455555555555555555555
Q ss_pred HH
Q 038936 387 IK 388 (476)
Q Consensus 387 ~~ 388 (476)
+.
T Consensus 333 al 334 (406)
T 3sf4_A 333 HL 334 (406)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=1.3e-14 Score=128.96 Aligned_cols=273 Identities=13% Similarity=0.029 Sum_probs=173.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHH
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD---EVVWSALSDMYGKCGSINEARQIFDKMVDR---------DVVSWT 229 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 229 (476)
+......+...|+++.|...++.+++...... ...+..+...+...|++++|...+++..+. ....+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445566677778888888877776642211 355667777777778888777777765321 133566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhcccc--------------------HHHHHHHHH
Q 038936 230 AMIGRYFQEGRREEGFALFSELIKSGI-RPN----AFTFAGVLNACADHAA--------------------EELGKQVHG 284 (476)
Q Consensus 230 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 284 (476)
.+...+...|++++|...+.+..+... .++ ..++..+...+...|+ ++.|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666777777777777777776654310 011 1244444455555555 455554444
Q ss_pred HHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC
Q 038936 285 YMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT---QP 359 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~ 359 (476)
..... ...... .....+..+...+...|++++|...+++..+... .+
T Consensus 168 ~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 168 ENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp HHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 43321 000000 1123566677778888888888888888765310 01
Q ss_pred --cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC-C------CC
Q 038936 360 --DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM-P------MK 426 (476)
Q Consensus 360 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~ 426 (476)
...++..+...+...|++++|.+.++++.+...-.++ ..++..++.++...|++++|...++++ . ..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 1236777888888999999999999888754221222 456778889999999999999998875 1 11
Q ss_pred C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 427 P-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 427 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
+ ...++..++..+...|++++|...+++++++.++.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 1 23477888899999999999999999999987753
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=5.8e-13 Score=120.68 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=154.9
Q ss_pred HHHHHHcCCCHHHHHHHHHhhcc-----c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 200 LSDMYGKCGSINEARQIFDKMVD-----R----DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 200 l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
....+...|++++|+..+++..+ + ...++..+...|...|++++|...+.+..+.-...+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 55666677777777777777643 1 12356666777777777777777776665421000000
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCC
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGM 341 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~ 341 (476)
.+....++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 180 --------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 180 --------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 000112333444444444444444444444331 11 2367778888899999
Q ss_pred hHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC-
Q 038936 342 PDKALEYFELLLKS----GT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG---LTYTADHYACIVDLLARSGR- 412 (476)
Q Consensus 342 ~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~- 412 (476)
+++|+..+++..+. +. +....++..+...+...|++++|.+.++++.+... .+.....+..++..+...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 99999999888762 22 33456788899999999999999999998876421 12222335678888999999
Q ss_pred --hhhHHHHHhhCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 413 --FHEAEDVISKMPMKPDK-FLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 413 --~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
+++|+.++++....|+. ..+..++..|...|++++|...+++++++..
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 89999999998665543 4677889999999999999999999998544
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.6e-14 Score=116.23 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=138.4
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA 370 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (476)
++.+|..+...|...|++++|+..|++..+ .++..+..+..+|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 455667777777777777777777777653 355678888889999999999999999998864 3355677777888
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+...++++.|.+.+.++... .+.+...+..++.+|.+.|++++|++.|+++ ...| +...|..++.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999999875 3556778899999999999999999999986 4444 677899999999999999999
Q ss_pred HHHHHHHHHcCCCCc
Q 038936 449 KRAAEALFEIEPENP 463 (476)
Q Consensus 449 ~~~~~~~~~~~p~~~ 463 (476)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999774
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=2.3e-14 Score=133.05 Aligned_cols=194 Identities=9% Similarity=-0.001 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh-hhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV-ENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
.+.+...++...... +.+...+..+...+...|++ ++|+..|++..+ | +...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555444332 34556666677777777777 777777776653 3 456777888888888888888888888
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcc---------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChh
Q 038936 352 LLKSGTQPDHIVFVGVLTACTHA---------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS--------GRFH 414 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 414 (476)
..+. .|+...+..+...+... |++++|++.++++.+. .+.+...|..++.+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8874 46667777788888888 8888888888888864 244567788888888887 8888
Q ss_pred hHHHHHhhC-CCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 415 EAEDVISKM-PMKP----DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 415 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+|++.|+++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888885 3344 56678888888888888888888888888888888888888877764
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.9e-13 Score=113.80 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=129.5
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVL 267 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (476)
+.+...+..++..+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45677889999999999999999999998854 346678889999999999999999999998875 45667788888
Q ss_pred HHHhcc-ccHHHHHHHHHHHHHhCCCC-chhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 038936 268 NACADH-AAEELGKQVHGYMTRIGYDP-YSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 268 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 345 (476)
..+... |+++.|...++.+.+.+..| +...+..+...+. ..|++++|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------~~~~~~~A 132 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-------------------------------KQGQFGLA 132 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-------------------------------HTTCHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-------------------------------HcCCHHHH
Confidence 888889 99999999998887722122 2334444444444 44555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT-YTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+..++++.+.. +.+...+..++..+...|++++|.+.++++.+.. + .+...+..++..+...|+.++|..+++.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555544432 1223444445555555555555555555554431 2 23334444444455555555555555443
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=3.1e-14 Score=120.17 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLN 268 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (476)
.....+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45667888899999999999999999998653 45678888999999999999999999998875 456777888888
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHH
Q 038936 269 ACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 345 (476)
.+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8889999999999999888765 34444444555555555555555555444331 2333444444444444444444
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 346 LEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
+..++++.+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444444432 12233444444444444444444444444443
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=7.4e-14 Score=127.96 Aligned_cols=273 Identities=10% Similarity=0.001 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHc----C-CCchHHHH
Q 038936 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----G-FDSDEVVW 197 (476)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 197 (476)
.+..+...+...|++++|+..|+++....+..+. ...+..+...+...|+++.|...+++.++. + .+....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4556678889999999999999999874222221 146778888999999999999999988754 2 13345678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhccc---------chhhHHHHHHHHHhcCC-----------------hhHHHHHHHHH
Q 038936 198 SALSDMYGKCGSINEARQIFDKMVDR---------DVVSWTAMIGRYFQEGR-----------------REEGFALFSEL 251 (476)
Q Consensus 198 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 251 (476)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|...+.+.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999987442 23467888899999999 88888887776
Q ss_pred HHc----CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCCh
Q 038936 252 IKS----GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDL 326 (476)
Q Consensus 252 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (476)
.+. +..+ ....+..+...+...|++++|...+++..+.... ... .. ...
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~--------------~~-----------~~~ 263 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGD--------------RA-----------AER 263 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC--------------HH-----------HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCC--------------cH-----------HHH
Confidence 542 1111 1123444445555556666666655554433100 000 00 001
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----Ch
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-----PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----TA 397 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 397 (476)
..+..+...|...|++++|+..+++..+.... ....++..+...+...|++++|.+.++++.....-.+ ..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 25556666677777777777777766543110 1134566677777777888888877777665321111 13
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 398 DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++..++.+|.+.|++++|.+.++++
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35667777888888888888877764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=1.1e-13 Score=122.94 Aligned_cols=273 Identities=14% Similarity=0.075 Sum_probs=180.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHc----CCC-chHHHH
Q 038936 125 SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRT----GFD-SDEVVW 197 (476)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 197 (476)
.+......+...|++++|+..|+++....+..|. ...+..+...+...|+++.|.+.++...+. +.+ ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445567888999999999999999874222221 356778888999999999999999987643 222 235678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHHHHHHhcCC--------------------hhHHHHHH
Q 038936 198 SALSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMIGRYFQEGR--------------------REEGFALF 248 (476)
Q Consensus 198 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 248 (476)
..+...+...|++++|...+++..+. + ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 88999999999999999999987441 2 2367788889999999 88888888
Q ss_pred HHHHHc----CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC
Q 038936 249 SELIKS----GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR 323 (476)
Q Consensus 249 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (476)
.+..+. +..+ ....+..+...+...|+++.|...++...+..... ++. .
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~-----------~ 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---------------GDK-----------A 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------TCH-----------H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---------------CCh-----------H
Confidence 776532 1011 11234444445555566666665555544321000 000 0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-- 396 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 396 (476)
....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++++........+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 01225566677777777888887777776543100 11 345667777788888888888888877653211111
Q ss_pred --hhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 397 --ADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 397 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..++..++.+|.+.|++++|.+.++++
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 345677888888888888888888774
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.4e-13 Score=114.89 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=148.8
Q ss_pred CCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHH
Q 038936 258 PNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIA 334 (476)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 334 (476)
.|+..+......+...|++++|...++...+...+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 455677777778888899999999999888876436667777788888888888888888887764 3 3456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDH-------IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT---ADHYACIV 404 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 404 (476)
.|...|++++|+..+++..+... .+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 88888888888888888887542 233 34666777778888888888888888743 443 56677777
Q ss_pred HHHHhcCCh--hhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 405 DLLARSGRF--HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 405 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.+|...|+. ++|..+ . ..+...+.... ....+.+++|+..++++++++|+++.+...|+.+..
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 777666543 222211 1 11233333332 334567899999999999999999999999988764
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=8e-13 Score=115.69 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=77.3
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCC--CC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPR--PD-LV-SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC- 371 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~- 371 (476)
.+..++..+...|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+...
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344444444444444444444444332 21 22 45555555555555555555555555532 12222232222211
Q ss_pred hccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C---CCC--cHHHHHHHHHHHHhcCCh
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P---MKP--DKFLWASLLGGCRIHGNL 445 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~ 445 (476)
...|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++..+...|+.
T Consensus 180 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 12455555555555555432 234445555555555555555555555554 1 133 233555555555555555
Q ss_pred HHHHHHHHHHHHcCCCC
Q 038936 446 DLAKRAAEALFEIEPEN 462 (476)
Q Consensus 446 ~~A~~~~~~~~~~~p~~ 462 (476)
++|..+++++++..|++
T Consensus 258 ~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 258 ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcccc
Confidence 55555555555555543
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=2.9e-13 Score=118.44 Aligned_cols=249 Identities=9% Similarity=0.064 Sum_probs=162.8
Q ss_pred HHHHHHHHhhcc---cchhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 038936 211 NEARQIFDKMVD---RDVVSWTAMIGRYF-------QEGRR-------EEGFALFSELIKSGIRPNAFTFAGVLNACADH 273 (476)
Q Consensus 211 ~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (476)
++|...|++... .++..|..++..+. ..|++ ++|..+|++.++.-.+.+...|..+...+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 566666666644 23445666555554 34665 77777777777631123445666677777777
Q ss_pred ccHHHHHHHHHHHHHhCCCCchh-hHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHH-HhcCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSF-AASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGY-AQNGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~-~~~~~~~~A~~~ 348 (476)
|+++.|..+|+++.+.. +.+.. ++..++..+.+.|++++|..+|++..+ | +...|...+... ...|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777643 22233 677777777777888888888777664 2 223333332222 236999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY--TADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
|++.++.. +.+...+..++..+.+.|++++|..+|+++.....++| ....|..++..+.+.|+.++|..+++++ ..
T Consensus 192 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998863 33567788888888899999999999999987423454 3567888888999999999999998886 22
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 426 KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 426 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
.|+......+. .+ ....+.+++.|+++..++.||.+
T Consensus 271 ~p~~~~~~~~~-~~----------~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 271 FREEYEGKETA-LL----------VDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp TTTTTSSCHHH-HH----------HTTTCBTTBCSSCHHHHHTTTCC
T ss_pred cccccccchHH-HH----------HHHHHhcccCCCCHHHHHhcCCC
Confidence 33211000000 01 11115567999999999988753
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=125.01 Aligned_cols=247 Identities=11% Similarity=0.066 Sum_probs=154.4
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc--------cc---hhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 038936 191 DSDEVVWSALSDMYGKCGSINEARQIFDKMVD--------RD---VVSWTAMIGRYFQEGRREEGFALFSELIKS----- 254 (476)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 254 (476)
+....++..+...+...|++++|..+++++.+ .+ ...+..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44567788888999999999999999888754 12 245677778888888888888888887653
Q ss_pred -CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHH
Q 038936 255 -GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSL 332 (476)
Q Consensus 255 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 332 (476)
+-.| ....+..+...+...|+++.|...++.+.+..... +..-.......+..+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------------------LGKDHPDVAKQLNNL 159 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------------------cCCCChHHHHHHHHH
Confidence 1112 23455556666666777777777666655431000 000000122356667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhc------CCCCC-h-
Q 038936 333 IAGYAQNGMPDKALEYFELLLKS------GTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKH------GLTYT-A- 397 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~- 397 (476)
...+...|++++|+..++++.+. +..|. ..++..+...+...|++++|.+.++++.+.. ...+. .
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 77778888888888888887664 21232 3467778888888999999999888887531 01111 1
Q ss_pred -----hhHHHHHHHHHhcCChhhHHHHHhhCC-CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 398 -----DHYACIVDLLARSGRFHEAEDVISKMP-MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 398 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
..+..+...+...+.+.+|...++... ..| +..++..++.+|...|++++|...+++++++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122233344556666777777777763 344 4558889999999999999999999999998875
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=2.8e-12 Score=116.14 Aligned_cols=224 Identities=9% Similarity=0.006 Sum_probs=126.2
Q ss_pred HHhcCChhHHHHHHHHHHHc--CCCCCh--hhHHHHHHH--HHhcCChHHHH-----------HHHHHccc-c-cch---
Q 038936 36 CRQNRALEEGKKVHSHLKSS--GFKPGV--FISNCLLDM--YAKCGNISDAQ-----------TLFDEMQE-R-DVC--- 93 (476)
Q Consensus 36 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~-~-~~~--- 93 (476)
+.+.+++++|..+++++.+. ..+.+. ..|-.++.. ....++++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46788899999988887654 222232 233333222 11223333333 44444432 1 111
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchH
Q 038936 94 ---SYNTMISGFTKGGSLEQARNLFDEMPQR---------DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFT 161 (476)
Q Consensus 94 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (476)
.+......+...|++++|...|++..+. ...++..+...+...|++++|+..+++........++.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 179 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-- 179 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--
Confidence 1222444556667777776666665431 12345566666666666666666666655411100000
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc-----c----hhhHHHHH
Q 038936 162 LSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR-----D----VVSWTAMI 232 (476)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~ 232 (476)
.+....++..+...|...|++++|+..+++..+- + ..++..+.
T Consensus 180 ----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 180 ----------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG 231 (383)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0112346677778888888888888888776431 1 13566777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CC-CCCHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 233 GRYFQEGRREEGFALFSELIKS----GI-RPNAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
..|...|++++|...+++..+. +. +....++..+...+...|+++.|...+++..+.
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7888888888888888777652 22 223445666666677777777777777766543
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=1.3e-12 Score=105.02 Aligned_cols=169 Identities=14% Similarity=0.053 Sum_probs=144.8
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTAC 371 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (476)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556677888899999999999999875 356778889999999999999999999999864 34677888889999
Q ss_pred hccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC-CCcHHHHHHHHHHHHhcCChHHHH
Q 038936 372 THAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM-KPDKFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 449 (476)
...|++++|.+.++++... .+.+...+..++.++...|++++|.+.++++ .. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999975 3557788899999999999999999999986 32 336778899999999999999999
Q ss_pred HHHHHHHHcCCCCchhH
Q 038936 450 RAAEALFEIEPENPATY 466 (476)
Q Consensus 450 ~~~~~~~~~~p~~~~~~ 466 (476)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999887543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=1.3e-11 Score=111.60 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=145.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhccccHHHHHHHHHHHHHhCC-----C-CchhhHHHHH
Q 038936 234 RYFQEGRREEGFALFSELIKSGI-RPN----AFTFAGVLNACADHAAEELGKQVHGYMTRIGY-----D-PYSFAASALV 302 (476)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~ 302 (476)
.+...|++++|...|.+..+... .++ ..++..+...+...|+++.|...+.+..+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34444555555555554443210 011 12333444444555555555555554443210 0 1133445556
Q ss_pred HHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCcHHHHHHHH
Q 038936 303 HMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLK-----SGTQPDHIVFVGVL 368 (476)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 368 (476)
.+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 666666666666666655442 11 24677788889999999999999998876 33 23356788889
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC---hhhHHHHHhhCCCCCcHH-HHHHHHHHHHh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYT---ADHYACIVDLLARSGR---FHEAEDVISKMPMKPDKF-LWASLLGGCRI 441 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l~~~~~~ 441 (476)
..+.+.|++++|...+++..+...-..+ ...+..+...+...|+ +.+|+..+++....|+.. .+..++..|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999875332222 3345666677778888 899999999976555443 66788888999
Q ss_pred cCChHHHHHHHHHHHHcC
Q 038936 442 HGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~ 459 (476)
.|++++|...++++++..
T Consensus 349 ~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998753
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=1.2e-12 Score=105.10 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=131.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
++..|..+...|.+.|++++|++.|++.++.. +-+...+..+..++...|++++|...++++... .+.+...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56789999999999999999999999999965 346678889999999999999999999999875 355677788899
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
..+...++++.|.+.+.++ ...| +...+..++..+...|++++|++.|+++++++|+++.++..+|.+|..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 9999999999999999986 3334 677889999999999999999999999999999999999999999864
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=4.1e-10 Score=107.55 Aligned_cols=405 Identities=9% Similarity=0.019 Sum_probs=271.9
Q ss_pred HHHHHHHhc---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHH
Q 038936 13 EALQILHQI---SHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN---ISDAQTLFDE 86 (476)
Q Consensus 13 ~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 86 (476)
+-+..|+.. .+.|...|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.|+ ++.+..+|+.
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334444444 2779999999999999999999999999999987 45677888888888888888 9999999999
Q ss_pred ccc-----ccchHHHHHHHHHHhcCCH--------HHHHHHHhcCC------CC-CcchHHHHHHHHHh---------cC
Q 038936 87 MQE-----RDVCSYNTMISGFTKGGSL--------EQARNLFDEMP------QR-DNFSWTAMISGYVR---------YN 137 (476)
Q Consensus 87 ~~~-----~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~ 137 (476)
... |++..|...+....+.++. +...++|+... .+ +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 874 5667788777766665543 33446666532 22 34567777765542 34
Q ss_pred ChhHHHHHHHHHHhccCCCCCchHHH---HHHHHH----------HhhhhhhhHHHHHHHHHHc--CC----C-------
Q 038936 138 QPIEALDLYRMMQNFENSVSNKFTLS---SVLSAV----------SAIQCLRLGKEIHGYIMRT--GF----D------- 191 (476)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~---~ll~~~----------~~~~~~~~a~~~~~~~~~~--~~----~------- 191 (476)
+.+.+..+|+.+.. -+...-..+|. ...... -...+++.|...+.++... ++ +
T Consensus 209 ~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 56778889988875 22221222332 111110 0112344444444443211 11 1
Q ss_pred ----c--------hHHHHHHHHHHHHcCC-------CHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHH-HHH
Q 038936 192 ----S--------DEVVWSALSDMYGKCG-------SINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGF-ALF 248 (476)
Q Consensus 192 ----~--------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~-~~~ 248 (476)
| ....|...+..--..+ ..+.+..+|++.+. ..+..|...+.-+...|+.++|. .+|
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 1234555554433322 12345567777754 35567888888888889999997 999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhC----------CCC-----------chhhHHHHHHHhhh
Q 038936 249 SELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIG----------YDP-----------YSFAASALVHMYSK 307 (476)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~ 307 (476)
++.... ++.+...+...+......|+++.|..+++.+.... .+. ...+|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 999875 34555556667777788899999999999988642 121 23467777787888
Q ss_pred cCChhhHHHHHccCCCC----ChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHH
Q 038936 308 CGNVENSKKVFNGMPRP----DLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQ 382 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 382 (476)
.|+.+.|..+|..+.+. ....|...+..-.+. ++++.|..+|+..++. .+-+...+...+......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999988643 233444333333344 4589999999999986 33455556677777778899999999
Q ss_pred HHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 383 YFHSIKEKHGLTY---TADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 383 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+|+++... .++ ....|..++..-.+.|+.+.+.++.+++
T Consensus 526 lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 526 LFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999864 221 3467888888888999999999999887
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=8.2e-13 Score=122.69 Aligned_cols=209 Identities=11% Similarity=0.002 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhcc---cchhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHH
Q 038936 210 INEARQIFDKMVD---RDVVSWTAMIGRYFQEGRR-EEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGY 285 (476)
Q Consensus 210 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 285 (476)
+++++..++.... .+...+..+...+...|++ ++|...|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555544422 2334555556666666666 66666666665543 23345555555556666666666666666
Q ss_pred HHHhCCCCchhhHHHHHHHhhhc---------CChhhHHHHHccCCC---CChhhHHHHHHHHHhc--------CChHHH
Q 038936 286 MTRIGYDPYSFAASALVHMYSKC---------GNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN--------GMPDKA 345 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~A 345 (476)
..+.. |+...+..+..+|... |++++|+..|++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 55543 3344555555555555 555555555544432 2234444444444444 445555
Q ss_pred HHHHHHHHHcCCC--CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 346 LEYFELLLKSGTQ--PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 346 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+..|++..+.... .+...+..+..++...|++++|.+.|+++.+. .+.+...+..+..++...|++++|++.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555555443210 13344444445555555555555555554432 1223334444444455555555554444443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=4.8e-11 Score=107.78 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcc-----cc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHh
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVD-----RD----VVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPNAF 261 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 261 (476)
.+++.+...|...|++++|+..|++..+ .+ ..++..+..+|...|++++|...+.+..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 4455566666666666666666655532 11 124555556666666666666666655541 1112233
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
++..+...+...|+++.|...+++..+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444445555555555555555555443
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=9.7e-13 Score=115.45 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=20.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038936 124 FSWTAMISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
.++..+...+...|++++|+.+++++..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 55 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALE 55 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777788888888888877764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=5.3e-12 Score=105.25 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
++..+......+...|++++|+..|++.++....++...+..+..++...|++++|++.++++.+. .+.+...+..++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344555556666666666666666666666543245555555666666666666666666666642 233445566666
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCC-cH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHhh
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKP-DK-------FLWASLLGGCRIHGNLDLAKRAAEALFEIEPE--NPATYVTMANIY 473 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~y 473 (476)
.+|...|++++|++.++++ ...| +. ..|..++..+...|++++|+..++++++++|+ ++.++..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 6666666666666666654 2222 22 34555566666666666666666666666666 666666666665
Q ss_pred h
Q 038936 474 A 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 164 ~ 164 (228)
T 4i17_A 164 Y 164 (228)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=3.4e-12 Score=123.22 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=142.8
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
|.+...++.+..+|.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44577889999999999999999999998874 3 46788999999999999999999999999864 23467888899
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChH
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLD 446 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 446 (476)
.++...|++++|++.|+++.+. .+.+...+..++.+|.+.|++++|++.|+++ ...| +...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999875 2446778999999999999999999999986 4555 5678889999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 038936 447 LAKRAAEALFEIEPEN 462 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~ 462 (476)
+|.+.+++++++.|+.
T Consensus 163 ~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQ 178 (723)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhH
Confidence 9999999999987753
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=1.7e-12 Score=125.30 Aligned_cols=161 Identities=10% Similarity=0.116 Sum_probs=128.3
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHH
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAG 335 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~ 335 (476)
+...++.+...+...|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677888888888888888888888888875 55677788888888888888888888887764 3 45678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
|...|++++|++.|++.++.. +-+...+..+..++...|++++|++.|+++.+. .+.+...+..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888854 234567888888888888888888888888864 24456778888888888888888
Q ss_pred HHHHHhhC
Q 038936 416 AEDVISKM 423 (476)
Q Consensus 416 A~~~~~~~ 423 (476)
|.+.++++
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=5.8e-11 Score=100.59 Aligned_cols=246 Identities=9% Similarity=0.008 Sum_probs=173.0
Q ss_pred HHHHHcCCCHHHHHHHHHhhcccchh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVDRDVV-SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELG 279 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 279 (476)
++-..-.|++..++.-...+...+.. .-.-+.++|+..|++... ..-.|....+..+...+. .+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----H
Confidence 34455679998888866655433322 223345788888887742 122344444444444442 22 6
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 280 KQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP-----DLVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
...+++....+ +++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+++.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777665 455555667889999999999999999987542 445777888999999999999999999988
Q ss_pred cCCCC-----cHHHHHHHHHHH--hccC--chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C
Q 038936 355 SGTQP-----DHIVFVGVLTAC--THAG--LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 355 ~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 424 (476)
. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56 356666677663 3334 899999999999764 455233334444899999999999999865 2
Q ss_pred C----------CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 425 M----------KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 425 ~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
. .| ++.++..++......|+ +|.++++++.+..|+++.+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 24 56677566666666787 8999999999999999866543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=9.4e-11 Score=105.71 Aligned_cols=160 Identities=9% Similarity=-0.080 Sum_probs=82.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCCch----HHHHHHHHHHhhhhhhhHHHHHHHHHHcC--C-Cc--hHHHHH
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSNKF----TLSSVLSAVSAIQCLRLGKEIHGYIMRTG--F-DS--DEVVWS 198 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~ 198 (476)
.....+...|++++|...+++.....+ ..+.. .+..+...+...|+++.|.+.+++..... . .+ ...++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677888888888888765221 11111 23444455556666777666666654421 0 11 112344
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhccc-----------chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHhhH
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVDR-----------DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRP----NAFTF 263 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 263 (476)
.+...+...|++++|...+++..+. ....+..+...+...|++++|...+.+..+..... ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555666666666666666655321 01233445555566666666666666555432111 11233
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHH
Q 038936 264 AGVLNACADHAAEELGKQVHGYMTR 288 (476)
Q Consensus 264 ~~l~~~~~~~~~~~~a~~~~~~~~~ 288 (476)
..+...+...|++++|...++....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=5.5e-12 Score=109.31 Aligned_cols=225 Identities=10% Similarity=0.012 Sum_probs=146.3
Q ss_pred CHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHhccccHHHHHHHH
Q 038936 209 SINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS----GIRPN-AFTFAGVLNACADHAAEELGKQVH 283 (476)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 283 (476)
++++|...|++. +..|...|++++|...|.+..+. |-+++ ..++..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877654 67788888888888888877653 21111 345666666666677777777666
Q ss_pred HHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-c-
Q 038936 284 GYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN-GMPDKALEYFELLLKSGTQP-D- 360 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~- 360 (476)
+...+. +...|+...+ ..+++.+...|... |++++|+..|++.++..... +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 655442 1112222211 23566777888885 88888888888877632110 1
Q ss_pred ---HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHH-
Q 038936 361 ---HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-----DHYACIVDLLARSGRFHEAEDVISKM-PMKPDKF- 430 (476)
Q Consensus 361 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 430 (476)
..++..+...+...|++++|+..|+++.+...-.+.. ..+..++.++...|++++|+..+++. ...|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3467778888889999999999999888642222221 14677888888999999999999886 4445422
Q ss_pred -----HHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 431 -----LWASLLGGCR--IHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 431 -----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
.+..++.++. ..+++++|+..|+++.+++|.+...+..+-
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 2344555554 347788899999888888887655554443
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=1e-09 Score=98.86 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C--Ccc----hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCc----hHHH
Q 038936 96 NTMISGFTKGGSLEQARNLFDEMPQ--R--DNF----SWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNK----FTLS 163 (476)
Q Consensus 96 ~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 163 (476)
......+...|++++|...+++... + +.. .++.+...+...|++++|.+.+++........++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444455567777777777655432 1 111 34455566666777777777777665422222222 2234
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHc----CCC--c-hHHHHHHHHHHHHcCCCHHHHHHHHHhhccc--------chhhH
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRT----GFD--S-DEVVWSALSDMYGKCGSINEARQIFDKMVDR--------DVVSW 228 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~ 228 (476)
.+...+...|+++.|.+.++..++. +.+ | ....+..+...+...|++++|...+++..+. ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555666677777777777666542 211 2 2344555666777777777777777665321 11345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 229 TAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 229 ~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..+...+...|++++|...+++...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566667777777777777776654
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.34 E-value=9.7e-13 Score=101.37 Aligned_cols=140 Identities=12% Similarity=0.004 Sum_probs=108.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
|...+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+. .|.+...|..++.+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 445556677888888888877653 233 345566788888999999999999988875 345677888899999999
Q ss_pred CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCchhHHHHHHhhhc
Q 038936 411 GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRA-AEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 411 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
|++++|+..|+++ ...| +...|..++..+...|++++|.+. ++++++++|+++.++...+.++..
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999885 4455 577888999999999998876655 699999999999999988887753
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=7.9e-11 Score=100.35 Aligned_cols=178 Identities=12% Similarity=0.018 Sum_probs=120.7
Q ss_pred chhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-cHHHHH
Q 038936 294 YSFAASALVHMYSKCGNVENSKKVFNGMPR--PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QP-DHIVFV 365 (476)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~~~~ 365 (476)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++... .| ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555566666666666666666553 22 34566677777777788888888877777532 11 134555
Q ss_pred HHHHHHhc--------cCchhhHHHHHHHHHHhcCCCCChhhH-----------------HHHHHHHHhcCChhhHHHHH
Q 038936 366 GVLTACTH--------AGLVDKGLQYFHSIKEKHGLTYTADHY-----------------ACIVDLLARSGRFHEAEDVI 420 (476)
Q Consensus 366 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 420 (476)
.+..++.. .|++++|+..|+++.+.. |.+.... ..++.+|.+.|++++|+..|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666766 778888888888877652 2222223 56788999999999999999
Q ss_pred hhC-CCCC----cHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCch---hHHHHHHhh
Q 038936 421 SKM-PMKP----DKFLWASLLGGCRIH----------GNLDLAKRAAEALFEIEPENPA---TYVTMANIY 473 (476)
Q Consensus 421 ~~~-~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~y 473 (476)
+++ ...| ....+..++.++... |++++|+..++++++..|+++. +...|..++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 986 2233 345777888888766 8999999999999999999864 344444443
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=6e-11 Score=102.31 Aligned_cols=230 Identities=10% Similarity=0.051 Sum_probs=130.9
Q ss_pred cCCCHHHHHHHHHhhcc-------c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHH
Q 038936 206 KCGSINEARQIFDKMVD-------R----DVVSWTAMIGRYFQEGRREEGFALFSELIKS------GIRP-NAFTFAGVL 267 (476)
Q Consensus 206 ~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~ 267 (476)
..|++++|+..+++..+ + ...++..+...|...|++++|...+.+..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555554422 1 1234556666666666666666666665543 1111 223444444
Q ss_pred HHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038936 268 NACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALE 347 (476)
Q Consensus 268 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 347 (476)
..+...|+++.|...+.++.+.... ....-.......+..+...|...|++++|+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH------------------------HcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555544432000 0000000123456677778888888888888
Q ss_pred HHHHHHHc------CCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhcCC-
Q 038936 348 YFELLLKS------GTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKH------G-LTYTADHYACIVDLLARSGR- 412 (476)
Q Consensus 348 ~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~- 412 (476)
.++++.+. +..| ...++..+...+...|++++|.++++++.+.. . .+.....+..+...+...+.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 88888764 1123 34567888889999999999999999888631 1 12223344444444444443
Q ss_pred -----hhhHHHHHhhCC-CCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 413 -----FHEAEDVISKMP-MKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIE 459 (476)
Q Consensus 413 -----~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 459 (476)
+.++...++... ..| ...++..++..+...|++++|...++++++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 333444444443 334 34578889999999999999999999998753
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=6.1e-11 Score=102.74 Aligned_cols=176 Identities=13% Similarity=0.017 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKA 345 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A 345 (476)
+++.|...+... ...|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466666666554 3345667777777777765542 11 35788888899999999999
Q ss_pred HHHHHHHHHcCC---CCc--HHHHHHHHHHHhcc-CchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhh
Q 038936 346 LEYFELLLKSGT---QPD--HIVFVGVLTACTHA-GLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 346 ~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 415 (476)
+..+++.++... .+. ..++..+...|... |++++|+..|+++.+...-..+ ..++..++..+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988876321 111 34788889999996 9999999999999864221111 3568889999999999999
Q ss_pred HHHHHhhC-CCCC---cH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 416 AEDVISKM-PMKP---DK-----FLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 416 A~~~~~~~-~~~p---~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
|+..|+++ ...| .. ..+..++.++...|++++|+..++++++++|+.+.+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999986 2222 21 157788888999999999999999999999986653
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.4e-10 Score=91.53 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038936 194 EVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
...+..++..+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666777777888888888888877542 44566777777778888888888887777653 33455566666666
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 271 ADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFE 350 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 350 (476)
...|+++.|...++.+.+.. + .+...+..+...+...|++++|...++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~-------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-P-------------------------------INFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-c-------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66677777777666665542 2 233455556666777777777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 351 LLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
++.+.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777653 335566777777778888888888888777754
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=1.5e-10 Score=87.22 Aligned_cols=132 Identities=20% Similarity=0.322 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56778888999999999999999998864 345677888888999999999999999999875 345677788899999
Q ss_pred HhcCChhhHHHHHhhC-CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 408 ARSGRFHEAEDVISKM-PM-KPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
...|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999986 22 3367788889999999999999999999999999863
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.28 E-value=1.5e-08 Score=93.88 Aligned_cols=368 Identities=11% Similarity=0.009 Sum_probs=210.4
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCC-HHHHHH
Q 038936 38 QNR-ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGS-LEQARN 113 (476)
Q Consensus 38 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~a~~ 113 (476)
+.| +++.|..+|+.+... -|. |+++.+..+|+.... |+...|...+....+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 477788888877764 233 888999999988775 777788887777766653 344555
Q ss_pred HHhcCCC------CCcchHHHHHHHHH----hcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHH
Q 038936 114 LFDEMPQ------RDNFSWTAMISGYV----RYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183 (476)
Q Consensus 114 ~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 183 (476)
+|+.... .+...|...+..+. ..|+.+.+.++|+.... .+...-...|..... +....+...+..++.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFEN-FELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHH-HHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHH-HHHHhccccHHHHHH
Confidence 5555331 24456666666544 34567778888888875 211111111111111 111111111222211
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc----cchhhHHHHHHHHHhcC--C-----hhHHHHHHHHHH
Q 038936 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD----RDVVSWTAMIGRYFQEG--R-----REEGFALFSELI 252 (476)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~ 252 (476)
+.. +.+..|..+++.+.+ .+...|...+.--...+ - .+.+..+|++++
T Consensus 148 ~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 148 DTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 110 122233333332211 12224444333221111 0 234566777777
Q ss_pred HcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH-HHHHccCC---------
Q 038936 253 KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS-KKVFNGMP--------- 322 (476)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~--------- 322 (476)
... +.+...|...+..+.+.|+.+.|..++++.... |.+...+.. |....+.++. ..+.+...
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 653 445666666666677788888888888888877 433333222 2111111111 11111110
Q ss_pred -C--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCchhhHHHHHHHHHHhcCCCCChh
Q 038936 323 -R--PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTH-AGLVDKGLQYFHSIKEKHGLTYTAD 398 (476)
Q Consensus 323 -~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 398 (476)
. .....|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~ 355 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTL 355 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHH
Confidence 0 11245666777777788899999999999 32 22344445433322222 347999999999999864 33455
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++++
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777888889999999999999984 2577888888877888999999999999886
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=7e-11 Score=96.67 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=130.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHH
Q 038936 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDK 344 (476)
Q Consensus 265 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (476)
.....+...|+++.|...++...+.. |.+...+... ..... ..........+..+|.+.|++++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCHHH
Confidence 33445667788888888888877763 1122222110 00000 00112334458889999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--hhhHHHHHhh
Q 038936 345 ALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGR--FHEAEDVISK 422 (476)
Q Consensus 345 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 422 (476)
|+..|++.++.. +-+...+..+..++...|++++|++.|+++.+. .|.+...+..++.+|...|+ ...+...++.
T Consensus 73 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 73 AYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999964 336678888999999999999999999999975 35567789999998876654 4556677777
Q ss_pred CC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 423 MP-MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 423 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
.. ..|....+...+.++...|++++|+..|+++++++|++ .....|..+
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 63 22333455566777788899999999999999999964 355555543
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=2.9e-11 Score=117.38 Aligned_cols=192 Identities=9% Similarity=-0.020 Sum_probs=104.4
Q ss_pred hccccHHHHHHHHHHHH--------HhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhc
Q 038936 271 ADHAAEELGKQVHGYMT--------RIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQN 339 (476)
Q Consensus 271 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 339 (476)
...|++++|.+.++... +.. +.+...+..+...+...|++++|+..|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 222 33445555566666666666666666666553 2445566666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
|++++|+..|++..+.. +.+...+..+..++...|++++ ++.|+++.+. .+.+...+..++.++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666643 1234455556666666666666 6666666653 233445566666666666666666666
Q ss_pred HhhC-CCCCc-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCchhHH
Q 038936 420 ISKM-PMKPD-KFLWASLLGGCRIHGN-----LDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 420 ~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
|+++ ...|+ ...+..++.++...|+ .++..+..+...++.+.++....
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 6664 34443 3455555555544444 23333333333344444444433
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.25 E-value=1e-10 Score=86.81 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=96.4
Q ss_pred CCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHH
Q 038936 357 TQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWA 433 (476)
Q Consensus 357 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 433 (476)
+.|+. ..+...+..+.+.|++++|++.|+++++. .|.+...|..++.+|.+.|++++|++.++++ ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35667788888899999999999988865 3556778888999999999999999999885 4344 677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++.++...|++++|++.|+++++++|+|+.++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998875
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=4.6e-10 Score=96.68 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHc------CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc----------
Q 038936 161 TLSSVLSAVSAIQCLRLGKEIHGYIMRT------GF-DSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---------- 223 (476)
Q Consensus 161 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 223 (476)
.+..+...+...|+++.|...++..++. +. +....++..+...|...|++++|+..+++..+.
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444332 11 223456666677777777777777777666321
Q ss_pred -chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHhccccHHHHHHHHHHHHHh
Q 038936 224 -DVVSWTAMIGRYFQEGRREEGFALFSELIKS------GIRP-NAFTFAGVLNACADHAAEELGKQVHGYMTRI 289 (476)
Q Consensus 224 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 289 (476)
....+..+...|...|++++|...+++..+. +-.| ...++..+...+...|+++.|...++++.+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1234566666677777777777777666553 1112 2345555666666777777777777666543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=4.8e-10 Score=108.88 Aligned_cols=181 Identities=9% Similarity=-0.023 Sum_probs=108.2
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 236 FQEGRREEGFALFSELI--------KSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 236 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
...|++++|+..+++.. +.. +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666777777776666 321 3334455556666666777777777777666654 4455666666666777
Q ss_pred cCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 308 CGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.|++++|+..|+++.+ | +...|..+..++.+.|++++ ++.|++.++.+ +.+...+..+..++...|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777766653 2 44566666666777777777 77777766643 224455666666677777777777777
Q ss_pred HHHHHhcCCCC-ChhhHHHHHHHHHhcCC--------hhhHHHHHhhC
Q 038936 385 HSIKEKHGLTY-TADHYACIVDLLARSGR--------FHEAEDVISKM 423 (476)
Q Consensus 385 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 423 (476)
+++.+ ..| +...+..++.++...|+ +++|.+.+..+
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 66653 233 34455556666544332 55555555554
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=3.2e-10 Score=108.25 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=118.4
Q ss_pred cCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHH
Q 038936 308 CGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYF 384 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 384 (476)
.|++++|...+++..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677778888877764 345678888888999999999999999998864 335677888888899999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---GNLDLAKRAAEALFEIE 459 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 459 (476)
+++.+. .+.+...+..++.+|.+.|++++|.+.++++ ...| +...+..++..+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998875 3456778888999999999999999999886 3334 567888888888888 99999999999999999
Q ss_pred CCCchhHHHHH
Q 038936 460 PENPATYVTMA 470 (476)
Q Consensus 460 p~~~~~~~~l~ 470 (476)
|++...+..|+
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98877776554
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=3e-09 Score=90.49 Aligned_cols=209 Identities=8% Similarity=-0.011 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---c---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHhhH
Q 038936 192 SDEVVWSALSDMYGKCGSINEARQIFDKMVDR---D---VVSWTAMIGRYFQEGRREEGFALFSELIKSGI-RP-NAFTF 263 (476)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~ 263 (476)
.+...+..+...+.+.|++++|+..|+.+.+. + ...+..+..+|...|++++|...|++..+... .| ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44556667778888888899998888888653 2 34677778888888999999999888887632 11 23345
Q ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHH
Q 038936 264 AGVLNACAD--------HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAG 335 (476)
Q Consensus 264 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 335 (476)
..+..++.. .|+++.|...++.+.+.. |.+......+.......+.. ...+..+...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~--------------~~~~~~la~~ 157 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL--------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 556666666 888888888888888764 22322222221111111111 1124567778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhcc----------CchhhHHHHHHHHHHhcCCCCC-hhhHHH
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQP--DHIVFVGVLTACTHA----------GLVDKGLQYFHSIKEKHGLTYT-ADHYAC 402 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 402 (476)
|.+.|++++|+..|+++++..... ....+..+..++... |++++|...|+++.+.++-.|. ......
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 889999999999999988754221 234666777777765 8888999999988876322111 123334
Q ss_pred HHHHHHhcCChhh
Q 038936 403 IVDLLARSGRFHE 415 (476)
Q Consensus 403 l~~~~~~~g~~~~ 415 (476)
+..++.+.+++++
T Consensus 238 l~~~~~~~~~~~~ 250 (261)
T 3qky_A 238 YTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444433
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=5.1e-09 Score=88.75 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=148.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
++-..-.|.+..++.-. .+.....+......+.+++...|++... ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc--
Confidence 34455678888887733 2222122223334445666666665431 11123322333333 333322
Q ss_pred hhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 312 ENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGT-QPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 312 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
|+..|++... ++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++++
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 4556667788889999999999999999887653 235567788889999999999999999999
Q ss_pred HHhcCCCC-----ChhhHHHHHHH--HHhcC--ChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 388 KEKHGLTY-----TADHYACIVDL--LARSG--RFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 388 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.+. .| +..+...++.+ ....| ++.+|..+|+++ ...|+...-..+..++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 864 66 34555556555 44445 899999999997 4446533333344478899999999999998887
Q ss_pred c----------CCCCchhHHHHHHhh
Q 038936 458 I----------EPENPATYVTMANIY 473 (476)
Q Consensus 458 ~----------~p~~~~~~~~l~~~y 473 (476)
. +|+|+.++.+++.++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~ 265 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLA 265 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHH
Confidence 6 588999997775443
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=7.1e-10 Score=88.00 Aligned_cols=157 Identities=8% Similarity=-0.065 Sum_probs=112.2
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-Hh
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CT 372 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 372 (476)
.+......+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566677788888888888888775 355677788888888888888888888876643 344333222211 12
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc---HHHHHHHHHHHHhcCChHHH
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD---KFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A 448 (476)
..+....|+..++++.+. .|.+...+..++.++...|++++|+..|+++ ...|+ ...+..++..+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223334578888888864 2445778888889999999999999998885 44553 45788888888888999999
Q ss_pred HHHHHHHHH
Q 038936 449 KRAAEALFE 457 (476)
Q Consensus 449 ~~~~~~~~~ 457 (476)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=1.7e-09 Score=89.62 Aligned_cols=184 Identities=9% Similarity=-0.023 Sum_probs=103.2
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--chhhHHHHHHHhhhcCChhhHHHHHccCCC--CChh----hHHHHH
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYMTRIGYDP--YSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLV----SWTSLI 333 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l~ 333 (476)
.+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+.. .+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 33344455666666777777776666542111 123444555556666666666665555542 2211 233333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhh--------------
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADH-------------- 399 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 399 (476)
.++...+.. .+ ..|..+...+...|++++|+..|+++.+.. |.+...
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH
Confidence 333321100 00 000011111223456666666666666431 112111
Q ss_pred ---HHHHHHHHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 400 ---YACIVDLLARSGRFHEAEDVISKM-PMKPD----KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 400 ---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
...++..|.+.|++++|+..|+++ ...|+ ...+..++.++...|++++|++.++++....|++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 135677899999999999999986 33333 247888999999999999999999999999998653
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=5.4e-08 Score=83.42 Aligned_cols=162 Identities=9% Similarity=0.093 Sum_probs=124.8
Q ss_pred CChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc------h
Q 038936 309 GNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPD--KALEYFELLLKSGTQPDHIVFVGVLTACTHAGL------V 377 (476)
Q Consensus 309 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 377 (476)
+++++++.+++.+.+ .+..+|+.-...+.+.|+++ ++++.++++++.++ -|...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 456666666666653 45566777777777778877 99999999998764 466677766666666666 8
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh-HHHHHhhC-CC----CCcHHHHHHHHHHHHhcCChHHHHHH
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE-AEDVISKM-PM----KPDKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
+++++.+++++.. .+-+...|+.+..++.+.|+..+ +..+.+++ .. ..++..+..++..+...|+.++|+++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999999975 46678889999999999998555 55566665 21 23677888999999999999999999
Q ss_pred HHHHHH-cCCCCchhHHHHHHhh
Q 038936 452 AEALFE-IEPENPATYVTMANIY 473 (476)
Q Consensus 452 ~~~~~~-~~p~~~~~~~~l~~~y 473 (476)
++.+.+ .+|-+...|...+..+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHhccChHHHHHHHHHHhhc
Confidence 999997 8999988888777654
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=5.6e-09 Score=89.99 Aligned_cols=160 Identities=8% Similarity=-0.003 Sum_probs=81.3
Q ss_pred HhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHH-HHHH
Q 038936 260 AFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSL-IAGY 336 (476)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l-~~~~ 336 (476)
...+..+...+...|+++.|...++...+.. |.+...+..+..++...|++++|...++++.. |+....... ...+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3344444555556666666666666665553 34445555566666666666666666666553 332222111 1224
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 038936 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
...++.++|+..+++..+.. +.+...+..+...+...|++++|++.|+++.....-..+...+..++.++...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 44555555555555555543 22344455555555555666666666655554421111233445555555555555555
Q ss_pred HHHHh
Q 038936 417 EDVIS 421 (476)
Q Consensus 417 ~~~~~ 421 (476)
...++
T Consensus 275 ~~~~r 279 (287)
T 3qou_A 275 ASXYR 279 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=7.3e-09 Score=84.56 Aligned_cols=128 Identities=9% Similarity=0.059 Sum_probs=81.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 231 MIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 231 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. |.+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6777777788888888887777754 3455667777777777777888888777777765 4556666666666655443
Q ss_pred --hhhHHHHHccCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 038936 311 --VENSKKVFNGMPRPDLVS--WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI 362 (476)
Q Consensus 311 --~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 362 (476)
...+...++.+..|++.. +.....++...|++++|+..|++.++ ..|+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 344556666666555432 33344455566677777777777766 345544
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=1.4e-09 Score=94.87 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=123.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 237 QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACAD-HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
..|++++|.+++++..+.. +.. +.. .++++.|...+... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888876642 111 111 35566666655543 34556667777777
Q ss_pred HHHccCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHhccCchhhHH
Q 038936 316 KVFNGMPR-----PD----LVSWTSLIAGYAQNGMPDKALEYFELLLKSGT---QPD--HIVFVGVLTACTHAGLVDKGL 381 (476)
Q Consensus 316 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~ 381 (476)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++.++... .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66665542 11 23566777777777888888777777654310 111 2456667777777 8888888
Q ss_pred HHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC-CC---CC---c-HHHHHHHHHHHHhcCChHHHH
Q 038936 382 QYFHSIKEKHGLTY----TADHYACIVDLLARSGRFHEAEDVISKM-PM---KP---D-KFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 382 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p---~-~~~~~~l~~~~~~~g~~~~A~ 449 (476)
+.|+++.+...-.. ...++..++.+|.+.|++++|++.|+++ .. .+ . ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877765321111 1345667777788888888888777765 11 11 1 125556666666678888888
Q ss_pred HHHHHHHHcCCCCch
Q 038936 450 RAAEALFEIEPENPA 464 (476)
Q Consensus 450 ~~~~~~~~~~p~~~~ 464 (476)
..+++++ ++|....
T Consensus 216 ~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 216 KCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHT-TSTTSTT
T ss_pred HHHHHHh-CCCCCCC
Confidence 8888888 7776543
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=4.3e-09 Score=86.20 Aligned_cols=183 Identities=9% Similarity=-0.081 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHH
Q 038936 277 ELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQNG----MPDKALEYFEL 351 (476)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~ 351 (476)
.+|.+.|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677788877764 566777888899999999999999998775 567788888888887 6 89999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh----cCChhhHHHHH
Q 038936 352 LLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEKHGLTYT---ADHYACIVDLLAR----SGRFHEAEDVI 420 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~ 420 (476)
..+.| +...+..+...|.. .+++++|+++|++..+. .|+ +..+..|+.+|.. .+++++|.+.|
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98865 56677778888877 88999999999998854 332 6788899999998 88999999999
Q ss_pred hhC-CCCCcHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 421 SKM-PMKPDKFLWASLLGGCRIH-G-----NLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 421 ~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
++. ...++...+..+...|... | ++++|+..|+++.+..+ +.+...|..
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 996 3334566777888877764 4 89999999999999876 445555543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=3.4e-09 Score=83.98 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=110.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CChhhHHHHHHH-HHhc
Q 038936 263 FAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PDLVSWTSLIAG-YAQN 339 (476)
Q Consensus 263 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~ 339 (476)
+......+...|+++.|...++...+.. |.+...+..+..++...|++++|+..++++.+ |++..+...... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3344455667777777777777766654 45566777788888888888888888888775 433332222212 2233
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV 419 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 419 (476)
++..+|+..+++..+.. +.+...+..+..++...|++++|...|+++.+..+...+...+..++.++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 34455788888888854 23567788888889999999999999999886422222355788899999999999999988
Q ss_pred Hhh
Q 038936 420 ISK 422 (476)
Q Consensus 420 ~~~ 422 (476)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=6.2e-10 Score=85.54 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=89.9
Q ss_pred HHHHhhhcCChhhHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPRP---DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
|..++...|++++|+..++..... +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344555666677777666666543 23455567777778888888888888877753 23556777777777888888
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHH-HhhC-CCCC-cHHHHHHHHHHHHhcCC
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDV-ISKM-PMKP-DKFLWASLLGGCRIHGN 444 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~-~~~p-~~~~~~~l~~~~~~~g~ 444 (476)
++|+..|+++.+. .|.+...+..++.+|.+.|++++|.+. ++++ ...| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888877764 234566777778888888887766654 4553 4444 44455555555555553
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=2e-09 Score=92.85 Aligned_cols=162 Identities=8% Similarity=-0.117 Sum_probs=122.2
Q ss_pred CCchhhHHHHHHHhhhcCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH-HH
Q 038936 292 DPYSFAASALVHMYSKCGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFV-GV 367 (476)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l 367 (476)
+.+...+..+...+...|++++|...|+++.+ | +...+..+...+.+.|++++|+..++++.... |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 55566667777888888999999988888763 3 45678888888889999999999888887653 4443322 22
Q ss_pred HHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc---HHHHHHHHHHHHhcC
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD---KFLWASLLGGCRIHG 443 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g 443 (476)
...+...++.+.|++.++++... .|.+...+..++.+|...|++++|+..|+++ ...|+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33356777788888888888865 3556778888888899999999999888886 33343 567888888888888
Q ss_pred ChHHHHHHHHHHHH
Q 038936 444 NLDLAKRAAEALFE 457 (476)
Q Consensus 444 ~~~~A~~~~~~~~~ 457 (476)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888888765
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.05 E-value=5.8e-09 Score=85.62 Aligned_cols=92 Identities=7% Similarity=-0.041 Sum_probs=69.1
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677778888888888888777777777778888888888888888888877754 33556677777777788888
Q ss_pred hhHHHHHHHHHHh
Q 038936 378 DKGLQYFHSIKEK 390 (476)
Q Consensus 378 ~~a~~~~~~~~~~ 390 (476)
++|++.++++.+.
T Consensus 88 ~~A~~~~~~al~~ 100 (213)
T 1hh8_A 88 DLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777763
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=1.6e-09 Score=94.46 Aligned_cols=203 Identities=9% Similarity=-0.056 Sum_probs=103.7
Q ss_pred hhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHH
Q 038936 171 AIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGK-CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFS 249 (476)
Q Consensus 171 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 249 (476)
..|++++|.+++++..+..- .. +.+ .+++++|...|... ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 46788888888887765421 10 122 57888888877654 566778888888888888
Q ss_pred HHHHcCC---CC--CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCC
Q 038936 250 ELIKSGI---RP--NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRP 324 (476)
Q Consensus 250 ~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (476)
+..+... .+ -..++..+...+...|++++|...+++..+.-.. .|+...
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~---------------~g~~~~----------- 114 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE---------------NGTPDT----------- 114 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT---------------TTCHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH---------------cCCHHH-----------
Confidence 7755310 01 1224445555555566666666666555433100 000000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC---
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ---P--DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--- 396 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 396 (476)
-..++..+...|.. |++++|+..|++.++.... + ...++..+...+...|++++|++.|+++.....-.+.
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 01234444444544 5555555555554432100 0 0234445555555555555555555555542110111
Q ss_pred -hhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 397 -ADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 397 -~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
...+..++.++...|++++|...|++
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11334444455555566666555555
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=8.4e-09 Score=84.65 Aligned_cols=130 Identities=10% Similarity=-0.075 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLA 408 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (476)
+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|++.++++... .+.+...+..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 4455666777777777777777653 456667777777777777777777777777764 2445666777777777
Q ss_pred hcCChhhHHHHHhhC-CCC----------------C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 038936 409 RSGRFHEAEDVISKM-PMK----------------P-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 409 ~~g~~~~A~~~~~~~-~~~----------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
..|++++|++.|+++ ... | ....+..++.++...|++++|...+++++++.|++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 777777777777764 111 1 2256677777777777777777777777777776543
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=4.6e-09 Score=87.84 Aligned_cols=138 Identities=19% Similarity=0.063 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--hhhHHHHHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--ADHYACIVDL 406 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 406 (476)
+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|. ...+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 3445666778888888888888776643 54445555666778888888888888754421 1111 2367778888
Q ss_pred HHhcCChhhHHHHHhhCC-CC--C--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 407 LARSGRFHEAEDVISKMP-MK--P--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~-~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+.+.|++++|++.|++.. .. | ....+...+.++.+.|+.++|...|++++..+|+ +.+...|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 889999999999988862 11 4 3346677777888999999999999999999998 777766653
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=7.7e-09 Score=77.66 Aligned_cols=128 Identities=16% Similarity=0.295 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+ +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~-------------- 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR-------------- 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC--------------
Confidence 4455555666666666666666665543 2334445555555555566666666655555442 11
Q ss_pred cCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHH
Q 038936 308 CGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSI 387 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 387 (476)
+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 68 -----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 68 -----------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp -----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 22334445555566666666666666666543 223455555666666666666666666666
Q ss_pred HH
Q 038936 388 KE 389 (476)
Q Consensus 388 ~~ 389 (476)
..
T Consensus 130 ~~ 131 (136)
T 2fo7_A 130 LE 131 (136)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 116
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=5.6e-09 Score=77.21 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-C-CCCcHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-P-MKPDKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 438 (476)
...+..+...+...|++++|.+.++++... .+.+...+..++.++.+.|++++|...++++ . .+.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456666777778888888888888888764 2445667778888888888888888888775 2 23366788888999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+...|++++|...++++++.+|+++.++..++.++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988753
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=1.1e-08 Score=84.68 Aligned_cols=149 Identities=12% Similarity=-0.042 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-hhHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQP--DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-DHYACI 403 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 403 (476)
..+..+...+.+.|++++|+..|+++.+..... ....+..++.++.+.|++++|+..|+++.+..+-.+.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344555666777788888888888877653211 12456667777778888888888888877653222221 244555
Q ss_pred HHHHHh------------------cCChhhHHHHHhhC-CCCCcHH-HH-----------------HHHHHHHHhcCChH
Q 038936 404 VDLLAR------------------SGRFHEAEDVISKM-PMKPDKF-LW-----------------ASLLGGCRIHGNLD 446 (476)
Q Consensus 404 ~~~~~~------------------~g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~l~~~~~~~g~~~ 446 (476)
+.++.+ .|++++|+..|+++ ...|+.. .+ ..++..+...|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 555544 67899999999986 4445422 22 34566788899999
Q ss_pred HHHHHHHHHHHcCCCCc---hhHHHHHHhhhc
Q 038936 447 LAKRAAEALFEIEPENP---ATYVTMANIYAS 475 (476)
Q Consensus 447 ~A~~~~~~~~~~~p~~~---~~~~~l~~~y~~ 475 (476)
+|+..|+++++..|+++ .++..++.+|..
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 99999999999999886 568888888753
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=4.3e-08 Score=84.82 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=118.6
Q ss_pred HHHHhhhcCChhhHHHHHccCCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHH
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR-----PDL----VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVG 366 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 366 (476)
.+..+...|++++|...+++..+ ++. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888889999888887653 111 12334666677888999999999999884322 22 236888
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCC-cHHHHH
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHG----LTY-TADHYACIVDLLARSGRFHEAEDVISKM-------PMKP-DKFLWA 433 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~ 433 (476)
++.+|...|++++|...++++.+... ..+ ...++..++.+|.+.|++++|++.++++ ...+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999885221 111 2346788999999999999999999875 1122 256888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHc
Q 038936 434 SLLGGCRIHGN-LDLAKRAAEALFEI 458 (476)
Q Consensus 434 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 458 (476)
.++.++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999874
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=3e-08 Score=81.14 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=127.6
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHH
Q 038936 12 KEALQILHQIS-HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG----NISDAQTLFDE 86 (476)
Q Consensus 12 ~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 86 (476)
.+|++.|++.. ..++.++..+...+...+++++|..+|++..+.| ++..+..|...|.. + ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677777764 6788889999999999999999999999998876 56777777777776 6 89999999998
Q ss_pred cccc-cchHHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-----cchHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 038936 87 MQER-DVCSYNTMISGFTK----GGSLEQARNLFDEMPQRD-----NFSWTAMISGYVR----YNQPIEALDLYRMMQNF 152 (476)
Q Consensus 87 ~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 152 (476)
..++ ++..+..|...|.. .+++++|..+|++..+.+ +..+..|...|.. .+++++|+..|++...
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~- 157 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS- 157 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-
Confidence 7764 56778888888877 889999999998887754 4677888888887 7788888888888876
Q ss_pred cCCCCCchHHHHHHHHHHhh-h-----hhhhHHHHHHHHHHcC
Q 038936 153 ENSVSNKFTLSSVLSAVSAI-Q-----CLRLGKEIHGYIMRTG 189 (476)
Q Consensus 153 ~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 189 (476)
. ..+...+..+...+... | +.++|...++...+.|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2 22333444444444332 2 5666666666666665
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=1.4e-09 Score=83.22 Aligned_cols=117 Identities=11% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CC
Q 038936 348 YFELLLKSGTQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PM 425 (476)
Q Consensus 348 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 425 (476)
.++++.+. .| +...+..+...+...|++++|+..|+++... .+.+...|..++.+|...|++++|++.|+++ ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444442 33 3345666777778888888888888888764 3446677788888888888888888888875 33
Q ss_pred CC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 426 KP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 426 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.| +...+..++.++...|++++|+..|++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34 55677788888888899999999999999888887765443
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.4e-08 Score=87.94 Aligned_cols=161 Identities=11% Similarity=-0.042 Sum_probs=113.7
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc--HHH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR--P-DL------VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQ---PD--HIV 363 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~~ 363 (476)
+...+..+...|++++|...+++..+ + .. ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455667777888888777764432 1 11 22344556677888999999999888764211 11 347
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-------cHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-----ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-------DKF 430 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~ 430 (476)
+..+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|++.++++ ...+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 788888899999999999999988732111222 257888899999999999999998875 1111 256
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHHHHc
Q 038936 431 LWASLLGGCRIHGNLDLA-KRAAEALFEI 458 (476)
Q Consensus 431 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 458 (476)
++..++.++...|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888899999999999 7878888874
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.99 E-value=5.7e-09 Score=78.23 Aligned_cols=113 Identities=7% Similarity=0.022 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHH
Q 038936 360 DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLG 437 (476)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 437 (476)
+...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|++.++++ ...| +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445566666666677777777777666642 2335566666777777777777777777664 2223 5667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 438 GCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++...|++++|+..++++++.+|++..++..++.+|.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 8999999999999999999999999999999988875
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=5.2e-09 Score=83.05 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=100.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--
Q 038936 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL-LARSGRF-- 413 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 413 (476)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.... +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888888764 3466778888888899999999999999988752 4466778888888 7788998
Q ss_pred hhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 414 HEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 414 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
++|+..++++ ...| +...+..++..+...|++++|...++++++.+|+++.....+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999886 3334 5678888888899999999999999999999998876554443
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=2.2e-09 Score=81.93 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+...|++++|+..|+++... .|.+...|..++.+|...|++++|+..|+++ ...| ++..|..++.++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 35666667777778888888888777764 2445667777778888888888888887775 3334 456777888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc
Q 038936 440 RIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
...|++++|+..|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888654
No 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=1.4e-08 Score=74.08 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 438 (476)
...+..++..+...|++++|...++++... .+.+...+..++.++...|++++|...++++ ...| +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566677777788888888888877764 2445667777888888888888888888775 3333 56778888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+...|++++|...++++++.+|+++..+..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999998887653
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.94 E-value=1.4e-08 Score=75.67 Aligned_cols=112 Identities=8% Similarity=-0.003 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 438 (476)
...+..++..+...|++++|...++++... .+.+...+..++.++...|++++|++.++++ ...| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777778888888888877764 2445667777788888888888888888775 2233 56678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+...|++++|...++++++..|+++.++..++.++.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 889999999999999999999999989988888775
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.93 E-value=8.9e-09 Score=76.44 Aligned_cols=111 Identities=10% Similarity=-0.092 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+...|++++|+..|+++.+. .+.+...+..++.+|.+.|++++|+..++++ ...| +...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666677778888888888888888764 2445677888888888888888888888875 3344 567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcC------CCCchhHHHHHHhhh
Q 038936 440 RIHGNLDLAKRAAEALFEIE------PENPATYVTMANIYA 474 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~y~ 474 (476)
...|++++|+..++++++++ |+++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999 888888888877653
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.92 E-value=1.4e-06 Score=80.83 Aligned_cols=200 Identities=12% Similarity=0.017 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc--
Q 038936 177 LGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKS-- 254 (476)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 254 (476)
.+..++++++... +.+...|...+..+.+.|+.++|..++++.... +.....-+ .|....+.++. ++.+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhhcchhHH---HHHHHHHHH
Confidence 3455566555532 444555655666666666666666666665433 22111111 12221111111 1121111
Q ss_pred -------CCCC---CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC-ChhhHHHHHccCCC
Q 038936 255 -------GIRP---NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG-NVENSKKVFNGMPR 323 (476)
Q Consensus 255 -------~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 323 (476)
+..+ ....|...+....+.++.+.|..+|+.. +.. +.+..+|......-...+ +.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0001 1133444445555566677777777776 221 123333332222222223 57777777776543
Q ss_pred --C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 324 --P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 324 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
| ++..|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 23345555666667777777777777752 2345555555555566777777777777665
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.92 E-value=1.2e-08 Score=79.82 Aligned_cols=110 Identities=13% Similarity=-0.012 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGG 438 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 438 (476)
...+..+...+...|++++|++.|+++.+. .+.+...+..++.+|.+.|++++|+..++++ ...| +...|..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666666777777777777777777754 2345666777777777777777777777775 3333 46677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
+...|++++|+..|+++++++|+++.++...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888888888888888888887765555443
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=9.4e-09 Score=98.12 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..++.+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999998853 335678888999999999999999999999964 34567889999999999999999999
Q ss_pred HHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 419 VISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 419 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
.++++ ...| +...+..++.++...|++++|++.++++++++|+++.++..++.+|..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99996 3344 577899999999999999999999999999999999999999998864
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=1.8e-08 Score=76.60 Aligned_cols=107 Identities=16% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCR 440 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 440 (476)
.+..+...+...|++++|+..|+++... .|.+...|..++.+|.+.|++++|+..|+++ ...| ++..+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455566667777777777777777754 2445666777777777777777777777775 2233 4556677777788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 441 IHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
..|++++|+..|++++++.|+++........
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 8888888888888888888877665544433
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=2.3e-08 Score=81.26 Aligned_cols=153 Identities=16% Similarity=0.029 Sum_probs=96.9
Q ss_pred hcCChhhHHH---HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCchh
Q 038936 307 KCGNVENSKK---VFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKS----GTQP-DHIVFVGVLTACTHAGLVD 378 (476)
Q Consensus 307 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~ 378 (476)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322234456666777777777777777777776652 1111 2345667777778888888
Q ss_pred hHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhhHHHHHhhCC------CCCc--HHHHHHHHHHHHhcCCh
Q 038936 379 KGLQYFHSIKEKHGLTY-----TADHYACIVDLLARSGRFHEAEDVISKMP------MKPD--KFLWASLLGGCRIHGNL 445 (476)
Q Consensus 379 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~--~~~~~~l~~~~~~~g~~ 445 (476)
+|.+.+++..+.....+ ....+..++.++...|++++|.+.+++.. ..+. ..++..++..+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887765421122 13346677788888888888888877641 1111 23456777778888888
Q ss_pred HHHHHHHHHHHHcC
Q 038936 446 DLAKRAAEALFEIE 459 (476)
Q Consensus 446 ~~A~~~~~~~~~~~ 459 (476)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88988888888754
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=6e-08 Score=74.14 Aligned_cols=111 Identities=17% Similarity=0.026 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHH
Q 038936 361 HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWAS 434 (476)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 434 (476)
...+..+...+...|++++|.+.|+++.+ ..|+ ...+..++.+|...|++++|++.++++ ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555555666666666666666553 2333 455666666777777777777777664 2233 5667788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
++.++...|++++|...++++++++|+++.++..++.+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888899999999999999999999999988888887754
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=4.3e-07 Score=78.52 Aligned_cols=144 Identities=8% Similarity=-0.038 Sum_probs=111.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCcHH----HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hhhHH
Q 038936 331 SLIAGYAQNGMPDKALEYFELLLKSGT-QPDHI----VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----ADHYA 401 (476)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 401 (476)
..+..+...|++++|...+++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778999999999999999987432 22221 3335667778889999999999999974222233 23688
Q ss_pred HHHHHHHhcCChhhHHHHHhhCC-------C-CCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhH
Q 038936 402 CIVDLLARSGRFHEAEDVISKMP-------M-KPD-KFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN------PATY 466 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 466 (476)
.++.+|...|++++|+..++++- . .+. ..++..++..|...|++++|+..+++++++.++. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999998862 1 222 3378899999999999999999999999976543 6688
Q ss_pred HHHHHhhh
Q 038936 467 VTMANIYA 474 (476)
Q Consensus 467 ~~l~~~y~ 474 (476)
..+|.+|.
T Consensus 240 ~~lg~~~~ 247 (293)
T 3u3w_A 240 YQRGECLR 247 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88988875
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=2.2e-07 Score=80.36 Aligned_cols=169 Identities=15% Similarity=0.007 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHH
Q 038936 227 SWTAMIGRYFQEGRREEGFALFSELIKSGIRPNA-----FTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASAL 301 (476)
Q Consensus 227 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (476)
.+...+..+...|++++|...+.+..+.....+. ..+..+...+...|+++.|...++...+......
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------- 149 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------- 149 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-------
Confidence 3445566777888888888888777664321111 0111222233344455555555444433211000
Q ss_pred HHHhhhcCChhhHHHHHccCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH---cCC-CC--cHHHHHHHHHHHhc
Q 038936 302 VHMYSKCGNVENSKKVFNGMPRPD--LVSWTSLIAGYAQNGMPDKALEYFELLLK---SGT-QP--DHIVFVGVLTACTH 373 (476)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~ 373 (476)
.+. ..+++.+...|...|++++|+..+++..+ ... .+ ...++..++.+|..
T Consensus 150 ---------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 150 ---------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 001 23566666677777777777777777652 111 11 11466667777777
Q ss_pred cCchhhHHHHHHHHHHhc---CCCC-ChhhHHHHHHHHHhcCChhhH-HHHHhhC
Q 038936 374 AGLVDKGLQYFHSIKEKH---GLTY-TADHYACIVDLLARSGRFHEA-EDVISKM 423 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 423 (476)
.|++++|++.++++.+.. +... -..++..++.+|.+.|++++| ...++++
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 777777777777766431 1111 145567777777777777777 5555553
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=9.8e-08 Score=74.55 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++++... .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456677788889999999999999988864 345677888888899999999999999998875 34567788889999
Q ss_pred HHhcCChhhHHHHHhhC-CCCC-cHHHH--HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 407 LARSGRFHEAEDVISKM-PMKP-DKFLW--ASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
+...|++++|.+.++++ ...| +...+ ...+..+...|++++|+..+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999886 3233 44444 33444467789999999999887663
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=1.2e-05 Score=68.92 Aligned_cols=209 Identities=8% Similarity=0.013 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhccCCCCCch-HHHHHHHHHHhhh--hhhhHHHHHHHHHHcCCCchHHHHHHHHHHH----HcC---CC
Q 038936 140 IEALDLYRMMQNFENSVSNKF-TLSSVLSAVSAIQ--CLRLGKEIHGYIMRTGFDSDEVVWSALSDMY----GKC---GS 209 (476)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 209 (476)
++|++++..+.. ..|+.. .++.--.++...+ +++++++.++.++... |-+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 456666655554 223222 2333333333344 4555555555554443 22333333333333 333 56
Q ss_pred HHHHHHHHHhhccc---chhhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc------HHH
Q 038936 210 INEARQIFDKMVDR---DVVSWTAMIGRYFQEGRRE--EGFALFSELIKSGIRPNAFTFAGVLNACADHAA------EEL 278 (476)
Q Consensus 210 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 278 (476)
+++++.+++.+.+. +..+|+.-.-.+.+.|.++ +++..+.++.+.. +-|...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 67777777776543 3445555555566666666 7777777777654 3344555544444444444 666
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhh-HHHHHccCCC------CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038936 279 GKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVEN-SKKVFNGMPR------PDLVSWTSLIAGYAQNGMPDKALEYFEL 351 (476)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (476)
+.+.+..++... +.+...++.+...+.+.|+... +..+..++.+ .++..+..+...|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666666654 4555555555555555555332 3334444332 1333444455555555555555555555
Q ss_pred HHH
Q 038936 352 LLK 354 (476)
Q Consensus 352 ~~~ 354 (476)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=7.2e-08 Score=71.28 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..+...+..|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|++.++++++. .+.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 356667778888888888888888888764 345667777888888888888888888888864 24456778888888
Q ss_pred HHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 407 LARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
|...|++++|++.|+++ ...| +...+..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 88888888888888875 4445 344444443
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=5.9e-06 Score=71.61 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhc-C-ChhhHHHHH
Q 038936 242 EEGFALFSELIKSGIRPNAFTFAGVLNACADHA-AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKC-G-NVENSKKVF 318 (476)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 318 (476)
++|+.++.+++..+ +-+...++.--..+...| .+++++.+++.+.... +.+..+++.-..++... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444432 122223333333333333 3555555555555443 33344444433333333 3 556666666
Q ss_pred ccCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-------hhhH
Q 038936 319 NGMPRP---DLVSWTSLIAGYAQNGMPD--------KALEYFELLLKSGTQPDHIVFVGVLTACTHAGL-------VDKG 380 (476)
Q Consensus 319 ~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a 380 (476)
+++.+. |..+|+...-.+.+.|.++ ++++.++++++..+ -|...|+.....+.+.+. ++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 666642 3445555444444444454 88999999988753 466777777777777665 6888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh--------------------hhHHHHHhhC-CC-------CCcHHHH
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRF--------------------HEAEDVISKM-PM-------KPDKFLW 432 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~p~~~~~ 432 (476)
++.++++... .+-+...|..+-..+.+.|+. .+..++..++ .. .+.+..+
T Consensus 228 Le~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 228 LIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 8988888864 355677787777777777764 3344444444 21 2567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH-HcCCCCchhHHHHHHhh
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALF-EIEPENPATYVTMANIY 473 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~y 473 (476)
..++..|...|+.++|.++++.+. +.+|-...-|...+...
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 899999999999999999999987 68897777776655443
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=3.4e-08 Score=73.18 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC----c----HHHHHH
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP----D----KFLWAS 434 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~ 434 (476)
+..++..+.+.|++++|++.|+++++. .|.+...|..++.+|.+.|++++|++.++++ ...| + ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344455555555555555555555543 1233444555555555555555555555543 1111 1 235667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 435 LLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 435 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
++.++...|++++|++.|+++++..| ++.....|.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~ 123 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVK 123 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHH
Confidence 77788888999999999999888877 445554443
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=3.5e-08 Score=75.27 Aligned_cols=103 Identities=9% Similarity=-0.028 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
+...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|++.|+++.+. .|.++..+..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 34567778888999999999999999999864 346678888899999999999999999999875 344677888999
Q ss_pred HHHHhcCChhhHHHHHhhC-CCCCcHH
Q 038936 405 DLLARSGRFHEAEDVISKM-PMKPDKF 430 (476)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~-~~~p~~~ 430 (476)
.+|.+.|++++|++.|+++ ...|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999986 4455554
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=7.8e-08 Score=72.44 Aligned_cols=112 Identities=7% Similarity=-0.111 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 359 PDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
.+...+..+...+...|++++|...|+++... .+.+...+..++.++...|++++|+..++++ ...| +...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34556666777777777777777777777764 2445666777777777788888887777775 2233 566777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC-----CchhHHHHHHh
Q 038936 437 GGCRIHGNLDLAKRAAEALFEIEPE-----NPATYVTMANI 472 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 472 (476)
.++...|++++|+..+++++++.|+ +......+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877 55555555443
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=7.7e-08 Score=84.81 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=113.2
Q ss_pred cCChhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--------------HHHHHHHHHH
Q 038936 308 CGNVENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--------------HIVFVGVLTA 370 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 370 (476)
.+++++|...++...+ | +...+..+...|.+.|++++|+..|++.++...... ...+..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665543 2 355788888899999999999999999998643221 3678888888
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+.+.|++++|+..++++.+. .+.+...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999988875 3456778888888888999999998888886 3444 566778888888888888888
Q ss_pred -HHHHHHHHHc
Q 038936 449 -KRAAEALFEI 458 (476)
Q Consensus 449 -~~~~~~~~~~ 458 (476)
...|+++++.
T Consensus 284 ~~~~~~~~~~~ 294 (336)
T 1p5q_A 284 EKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5577777763
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=2.5e-08 Score=87.94 Aligned_cols=140 Identities=11% Similarity=-0.047 Sum_probs=84.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----------------hhhHHHHHH
Q 038936 273 HAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR--PD----------------LVSWTSLIA 334 (476)
Q Consensus 273 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----------------~~~~~~l~~ 334 (476)
.++++.|...++...+.. +.+...+..+...|.+.|++++|+..|++..+ |+ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345555555444333321 22344556666666777777777777666552 22 256666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+. .+.+...+..+..++.+.|+.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776653 234556666666677777777777777776654 2334556666666666666666
Q ss_pred hH
Q 038936 415 EA 416 (476)
Q Consensus 415 ~A 416 (476)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.73 E-value=3e-06 Score=73.12 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcC--ChhhHHHHHccCCC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 038936 276 EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCG--NVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGM-PDKALEYF 349 (476)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~ 349 (476)
++.+..+++.+.... |.+..+++.-.-++...+ .+++++.+++.+.+ .|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666554 445555555555555555 36677777776664 455666666666667777 47888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcc--------------CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHA--------------GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS----- 410 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 410 (476)
+++++..+ -|...|+.....+... +.++++++.+.++... .|-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 88888653 3555555554444333 4578888888888864 355666776665555554
Q ss_pred ------CChhhHHHHHhhC-CCCCcHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 411 ------GRFHEAEDVISKM-PMKPDKFLWASLLGGC-----RIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 411 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++++++|....-|..|..-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3467888888876 455654 333222222 2457888999999999999999998888876543
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=1.2e-08 Score=87.47 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=133.5
Q ss_pred CHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHH
Q 038936 259 NAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAG 335 (476)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 335 (476)
+...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...++++.+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667777888899999999999999999875 55788888999999999999999999998875 345688889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
|...|++++|+..|++..+.+ |+.. .+...+....+ ..++... ...... ..+.+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999999988743 3221 11111221111 1122222 222222 4555666655554443 68999
Q ss_pred hHHHHHhhC-CCCCcHH-HHHHHHHHHHhc-CChHHHHHHHHHHHHcC
Q 038936 415 EAEDVISKM-PMKPDKF-LWASLLGGCRIH-GNLDLAKRAAEALFEIE 459 (476)
Q Consensus 415 ~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 459 (476)
+|++.++++ ...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999885 5566544 334444444444 67889999999887744
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=1.8e-07 Score=75.58 Aligned_cols=117 Identities=8% Similarity=-0.053 Sum_probs=57.9
Q ss_pred HhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---------------HHHHH
Q 038936 304 MYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD---------------HIVFV 365 (476)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~ 365 (476)
.....|+++++.+.++.... .....+..+...+...|++++|+..|++..+...... ...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34445666666666554332 1334566677777888888888888888877431111 13444
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.+..++...|++++|+..++++.+. .+.+...+..++.+|...|++++|++.|++
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4445555555555555555555542 122334444444444444555554444444
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.72 E-value=1.7e-07 Score=69.66 Aligned_cols=102 Identities=17% Similarity=0.054 Sum_probs=67.6
Q ss_pred HHHHHhccCchhhHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc----HHHHHHHHHH
Q 038936 367 VLTACTHAGLVDKGLQYFHSIKEKHGLTYTA---DHYACIVDLLARSGRFHEAEDVISKM-PMKPD----KFLWASLLGG 438 (476)
Q Consensus 367 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 438 (476)
+...+...|++++|...|+++.... +.+. ..+..++.++.+.|++++|+..++++ ...|+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455566677777777777666542 2222 35666677777777777777777664 22232 4566777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 439 CRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+...|++++|...++++++..|+++.+...+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 88888888888888888888888776655444
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=5.5e-08 Score=71.35 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHh
Q 038936 364 FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRI 441 (476)
Q Consensus 364 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 441 (476)
+..+...+.+.|++++|+..++++.+. .+.+...+..++.++...|++++|+..|+++ ...| +...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344566677788888888888888764 3446677778888888888888888888875 3444 56678888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCc
Q 038936 442 HGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999999988764
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=2.2e-07 Score=72.52 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGC 439 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 439 (476)
..+..+...+...|++++|...++++... .+.+...+..++.++...|++++|++.++++ ...| +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45677888889999999999999999975 3556788999999999999999999999986 3334 677889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 440 RIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
...|++++|...++++++++|+++.++..++.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998888655544
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.1e-06 Score=73.52 Aligned_cols=180 Identities=8% Similarity=-0.073 Sum_probs=120.4
Q ss_pred hcCCHHHHHHHHHhcC---CCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCCC----------------
Q 038936 7 NQRRLKEALQILHQIS---HPSPSIYSSL-------IQFCRQNRALEEGKKVHSHLKSSGFKPG---------------- 60 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 60 (476)
..+++++|.+.|.++. +.....|..+ ..++.+.++..++...+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4789999999999985 6777888888 5777777777777776666554 2221
Q ss_pred ------hhhHHHHHHHHHhcCChHHHHHHHHHccc--ccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C----cchHH
Q 038936 61 ------VFISNCLLDMYAKCGNISDAQTLFDEMQE--RDVCSYNTMISGFTKGGSLEQARNLFDEMPQR-D----NFSWT 127 (476)
Q Consensus 61 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~----~~~~~ 127 (476)
......+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 12233456677788888999888888764 33235556666778888888888888766543 2 23566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCC--chHHHHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQNFENSVSN--KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTG 189 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (476)
.+..++...|++++|++.|++... ....|. .........++.+.|+.++|...|+++....
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 677788888888888888888764 222132 2234444455556666666666666665543
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.70 E-value=6.5e-08 Score=72.90 Aligned_cols=106 Identities=19% Similarity=0.026 Sum_probs=72.9
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCCCC-----C-----hhhHHHHHHHHHhcCChhhHHHHHhhC-CC-------CC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHGLTY-----T-----ADHYACIVDLLARSGRFHEAEDVISKM-PM-------KP 427 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p 427 (476)
.....+.+.|++++|+..|+++++-.+..| + ...|..++.++.+.|++++|+..++++ .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 344445555566666666655554311110 1 126777777777777777777777664 33 67
Q ss_pred c-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 428 D-KFLW----ASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 428 ~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+ ...| ...+.++...|++++|+..|+++++++|++......+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4 4578 899999999999999999999999999998877655543
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=1.1e-07 Score=70.81 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCC----Cc----HHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMK----PD----KFLWA 433 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~ 433 (476)
.+..++..+...|++++|...++++... .+.+...+..++.++...|++++|...++++ ... ++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444455555555555555555555543 1334445555555555666666666555553 111 11 45667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
.++.++...|++++|...++++++..| ++.....++.++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 777778888888888888888888877 566666666554
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=1.3e-07 Score=68.18 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC---cHHHHHHHHH
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP---DKFLWASLLG 437 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 437 (476)
..+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666677777777777777777654 2345566777777777778888887777775 3333 4667888888
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCCc
Q 038936 438 GCRIH-GNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 438 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 463 (476)
++... |++++|++.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999998888764
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.68 E-value=1.1e-07 Score=74.15 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhHHHHHHh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP-ATYVTMANI 472 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 472 (476)
+...|..++.+|.+.|++++|+..++++ ...| +...|..++.++...|++++|+..|+++++++|+++ .+...|..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456778888888888888888888885 3344 567888888889999999999999999999999887 556666554
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=1e-07 Score=81.70 Aligned_cols=93 Identities=10% Similarity=-0.043 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHH
Q 038936 160 FTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYF 236 (476)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 236 (476)
..+..+...+...|+++.|...++..++.. +.+...+..+..+|.+.|++++|+..+++..+. +...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444455555555555555555555443 234445555555555555555555555555332 2334445555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 038936 237 QEGRREEGFALFSELIK 253 (476)
Q Consensus 237 ~~~~~~~a~~~~~~~~~ 253 (476)
..|++++|...|.+..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=4.1e-07 Score=67.53 Aligned_cols=117 Identities=10% Similarity=0.000 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 3455666677777777777777777777653 235566667777777777788887777777764 2344666777777
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCCh
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNL 445 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 445 (476)
++.+.|++++|.+.++++ ...| +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777778888887777775 2233 455666666666666654
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=1.4e-07 Score=76.47 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSG---TQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|++++|.+.+++..+.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3444455555555555555555544210 0111 123455556666666666666666665543
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=1e-07 Score=72.73 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..|+++... .+.+...+..++.+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHH
Confidence 34445555556666666666666655543 224445555555566666666666666666543 133444555566666
Q ss_pred HhcCChhhHHHHHhhC
Q 038936 408 ARSGRFHEAEDVISKM 423 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~ 423 (476)
...|++++|++.|+++
T Consensus 100 ~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 100 LQXGELAEAESGLFLA 115 (148)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666554
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=4.5e-07 Score=67.61 Aligned_cols=115 Identities=12% Similarity=-0.009 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4456667777777888888888888777653 235566777777777788888888888777764 2445667777777
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG 443 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 443 (476)
++.+.|++++|.+.|+++ ...| +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888887775 3333 3445555555555444
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=7e-07 Score=65.62 Aligned_cols=112 Identities=19% Similarity=0.286 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..+++++... .+.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3456666677777777777777777777653 234556666777777777777777777777754 2445666777777
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHH
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCR 440 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 440 (476)
++...|++++|.+.++++ ...| +...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 777777777777777775 2223 3445555554443
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=4.7e-07 Score=66.95 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC-C----hhhHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY-T----ADHYAC 402 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~ 402 (476)
.+..++..+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++...-.+ + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667777888888888888888887753 23456677777788888888888888887775311111 1 235666
Q ss_pred HHHHHHhcCChhhHHHHHhhC-CCCCcHHHHH
Q 038936 403 IVDLLARSGRFHEAEDVISKM-PMKPDKFLWA 433 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 433 (476)
++.++...|++++|++.|++. ...|++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 777788888888888888774 3445554443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=8.7e-08 Score=77.48 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=83.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC--------------hhhH
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT--------------ADHY 400 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~ 400 (476)
.....|+++++.+.++.-.+.. ......+..+...+...|++++|++.|+++.......|+ ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455555555554322210 112334556666777777777777777777753222221 1567
Q ss_pred HHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 401 ACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 401 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
..++.+|.+.|++++|+..++++ ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 77777777777777777777775 2233 55667777777777777777777777777777777777777776653
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.60 E-value=2.7e-07 Score=71.61 Aligned_cols=134 Identities=19% Similarity=0.079 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC----hh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQ-PD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT----AD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 398 (476)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.++++.+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5566777777888888888888777653110 11 136677778888888899888888887753211111 44
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-------CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-------PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
.+..++.++...|++++|.+.+++. ...+ ....+..++..+...|++++|...+++++++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5677888888999999998888775 1111 2346778888889999999999999999986543
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.59 E-value=1.7e-07 Score=82.70 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH------------------HHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHI------------------VFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+..+...+.+.|++++|+..|++.++. .|+.. .|..+..++.+.|++++|+..++++++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666677777888888888777764 34433 778888899999999999999999987
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc-HHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCch
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD-KFLWASLLGGC-RIHGNLDLAKRAAEALFEIEPENPA 464 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 464 (476)
. .+.+...+..++.+|...|++++|+..|+++ ...|+ ...+..+.... ...+..+++...|+++++..|+++.
T Consensus 259 ~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 E--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 5 3456788999999999999999999999996 55564 34555555442 3447788899999999999998764
No 166
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=2.3e-06 Score=80.66 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=129.9
Q ss_pred hhhHHHHHccCCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC--
Q 038936 311 VENSKKVFNGMPR--P-DLVSWTSLIAGYAQNGM----------PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG-- 375 (476)
Q Consensus 311 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 375 (476)
.++|++.++.+.. | +..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3456777776664 3 34567666666666666 899999999999875 346778888888888888
Q ss_pred chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc----------
Q 038936 376 LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG-RFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH---------- 442 (476)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 442 (476)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999986 3557888888888899999 899999999986 4455 778888888777663
Q ss_pred ----CChHHHHHHHHHHHHcCCCCchhHHHHHHhhhc
Q 038936 443 ----GNLDLAKRAAEALFEIEPENPATYVTMANIYAS 475 (476)
Q Consensus 443 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 475 (476)
+.++++++.+++++..+|+|..+|..+.+++..
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 567999999999999999999999999998864
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.59 E-value=4.7e-07 Score=83.46 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=96.2
Q ss_pred cCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--------------HHHHHHHHHH
Q 038936 308 CGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--------------HIVFVGVLTA 370 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 370 (476)
.+++++|...|+...+ .....|..+...+.+.|++++|+..|++.++...... ...|..+..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445556555554443 2344677788888889999999999998887532211 3566777777
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHH
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLA 448 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 448 (476)
+.+.|++++|+..++++++. .+.+...+..++.+|...|++++|+..|+++ ...| +...+..+..++...|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777764 2445666777777777777777777777775 4445 344666677667777776666
Q ss_pred H-HHHHHHHH
Q 038936 449 K-RAAEALFE 457 (476)
Q Consensus 449 ~-~~~~~~~~ 457 (476)
. ..+++++.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34444443
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=6.6e-08 Score=70.52 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=55.6
Q ss_pred cCchhhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHH
Q 038936 374 AGLVDKGLQYFHSIKEKHG--LTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAK 449 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 449 (476)
.|++++|+..|+++.+. + .+.+...+..++.+|.+.|++++|++.|+++ ...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666642 1 1223455666666666677777777666664 2233 4556666777777777777777
Q ss_pred HHHHHHHHcCCCCchhHH
Q 038936 450 RAAEALFEIEPENPATYV 467 (476)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~ 467 (476)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 777777777777665443
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=0.00013 Score=63.20 Aligned_cols=170 Identities=8% Similarity=-0.020 Sum_probs=97.1
Q ss_pred hcCChhHHHHHHHHHHhccCCCCCc-hHHHHHHHHHHhhh-hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-C-CH
Q 038936 135 RYNQPIEALDLYRMMQNFENSVSNK-FTLSSVLSAVSAIQ-CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKC-G-SI 210 (476)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 210 (476)
..+..++|+++++.+.. ..|+. ..++.--..+...+ .++++.++++.++... +-+..+|+.-...+... + ++
T Consensus 66 ~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33444566666666664 23332 23344444444445 3666666666666554 44555666655555554 5 67
Q ss_pred HHHHHHHHhhcccch---hhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc----
Q 038936 211 NEARQIFDKMVDRDV---VSWTAMIGRYFQEGRRE--------EGFALFSELIKSGIRPNAFTFAGVLNACADHAA---- 275 (476)
Q Consensus 211 ~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 275 (476)
++++++++.+.+.++ .+|+...-.+.+.|.++ ++++.+.++.+.. +-|...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 778888887766443 44554444444444455 7777777777764 3455566655555555554
Q ss_pred ---HHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCC
Q 038936 276 ---EELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 276 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (476)
++++.+.+..+.... +.|...++.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566677776666664 5555566555555554443
No 170
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=3.1e-07 Score=72.64 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCch--hhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTA-CTHAGLV--DKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
..|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++|...++++... .+.+...+..+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 121 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLL 121 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 344444555555555555555555554432 1233344444444 4445554 5555555555543 12234444555
Q ss_pred HHHHHhcCChhhHHHHHhh
Q 038936 404 VDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~ 422 (476)
+.+|...|++++|...+++
T Consensus 122 a~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHH
Confidence 5555555555555555554
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.4e-06 Score=77.43 Aligned_cols=207 Identities=9% Similarity=-0.028 Sum_probs=114.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 232 IGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
...+.+.|++++|.+.|.++.+.......... ..+........ ....+..++..|...|++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GASVDDKRRNE-----------QETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCH
Confidence 45567788888888888888775422211000 00000000000 001123455555566666
Q ss_pred hhHHHHHccCCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHhccCch
Q 038936 312 ENSKKVFNGMPR-----PDL----VSWTSLIAGYAQNGMPDKALEYFELLLK----SGTQPD-HIVFVGVLTACTHAGLV 377 (476)
Q Consensus 312 ~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~ 377 (476)
++|.+.+..+.+ ++. .+.+.+...+...|+++.|+.++++... .+..+. ..++..++..+...|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 666655555442 111 1223333334456677777777766543 222222 34566677777788888
Q ss_pred hhHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC-------CCCCc--HHHHHHHHHHHHhcCC
Q 038936 378 DKGLQYFHSIKEKHGLTY----TADHYACIVDLLARSGRFHEAEDVISKM-------PMKPD--KFLWASLLGGCRIHGN 444 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 444 (476)
++|..+++++........ ...++..++..|...|++++|...++++ ..+|. ...+..++..+...|+
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 888888777765422221 2345667777888888888888777664 11111 2345555556666788
Q ss_pred hHHHHHHHHHHHH
Q 038936 445 LDLAKRAAEALFE 457 (476)
Q Consensus 445 ~~~A~~~~~~~~~ 457 (476)
+++|...+.++++
T Consensus 232 y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 232 YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887776
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.6e-06 Score=65.63 Aligned_cols=104 Identities=17% Similarity=0.075 Sum_probs=77.4
Q ss_pred HHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 317 VFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 317 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
.|+++.+.+ ...+..+...+.+.|++++|+..|++....+ +.+...+..+..++...|++++|+..|+++... .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--D 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--C
Confidence 344444432 3355566777888889999999998888764 345667777888888889999999999888875 2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 394 TYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.++..+..++.+|...|++++|++.|+++
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667888888899999999999888875
No 173
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.3e-06 Score=64.50 Aligned_cols=94 Identities=10% Similarity=-0.017 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 456667777888888888888888888764 345677888888888888888888888888864 24456778888888
Q ss_pred HHhcCChhhHHHHHhhC
Q 038936 407 LARSGRFHEAEDVISKM 423 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~ 423 (476)
+...|++++|++.|+++
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 88888888888888875
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.3e-05 Score=73.53 Aligned_cols=163 Identities=9% Similarity=-0.093 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHh----hHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-Cchhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSG-IRPNAF----TFAGVLNACADHAAEELGKQVHGYMTRI----GYD-PYSFA 297 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 297 (476)
+..++..|...|++++|.+.+.++.+.- ..++.. ..+.+-..+...|+.+.+..++...... +.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555543310 011111 1111222233455666666666554432 111 12345
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCC--------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CC-c--HH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPR--------P-DLVSWTSLIAGYAQNGMPDKALEYFELLLKSG--T-QP-D--HI 362 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~-~--~~ 362 (476)
+..+...|...|++++|..+++.+.. + ...++..++..|...|++++|..++++..... + .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 55666777777777777776665431 1 13467777888888888888888888765421 1 12 1 23
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.+..++..+...|++++|...|.+..+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566667778888888888888777653
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=8.5e-07 Score=79.05 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=66.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+...|..++.+|.+.|++++|++.++++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..|+.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566788888899999999999998885 4455 5678888888999999999999999999999999998888888776
Q ss_pred h
Q 038936 474 A 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 352 ~ 352 (370)
T 1ihg_A 352 Q 352 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 176
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=1.9e-06 Score=67.05 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456666777777777777777777777753 235566777777777777777777777777764 2345666777777
Q ss_pred HHHhcCChhhHHHHHhhC
Q 038936 406 LLARSGRFHEAEDVISKM 423 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~ 423 (476)
+|.+.|++++|++.|+++
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777777775
No 177
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=3.7e-06 Score=60.91 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4456777888888999999999999988764 335677778888888899999999999988875 2445777888889
Q ss_pred HHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 406 LLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
++...|++++|.+.++++ ...| +...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999885 4445 344444443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=1.3e-06 Score=64.88 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC-CCC----hhhHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL-TYT----ADHYA 401 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 401 (476)
..+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++...... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777888888888888888887764 345667777778888888888888888887764211 111 56677
Q ss_pred HHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHH
Q 038936 402 CIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGG 438 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 438 (476)
.++.++.+.|++++|.+.|+++ ...|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7888888888888888888875 344555555544443
No 179
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.42 E-value=1e-06 Score=60.65 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
+...+..++..+...|++++|++.++++ ...| +...+..++.++...|++++|+..++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788888888888888888875 2233 5668888999999999999999999999999999999999999987
Q ss_pred hc
Q 038936 474 AS 475 (476)
Q Consensus 474 ~~ 475 (476)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=1.8e-05 Score=68.22 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=119.1
Q ss_pred hhhHHHHHccCCC---CChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-hhhHHHHH
Q 038936 311 VENSKKVFNGMPR---PDLVSWTSLIAGYAQNGM--PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL-VDKGLQYF 384 (476)
Q Consensus 311 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 384 (476)
+++++.+++.+.. .+..+|+.-...+...++ +++++.+++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566666666653 466788887777777774 899999999999976 3477777777777777787 58999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhc--------------CChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc------
Q 038936 385 HSIKEKHGLTYTADHYACIVDLLARS--------------GRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIH------ 442 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 442 (476)
.++.+. .+-+...|+....++.+. +.++++++.++++ ...| |...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999985 356777788777777665 4577888888885 3344 777887666666555
Q ss_pred -----CChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 038936 443 -----GNLDLAKRAAEALFEIEPENPATYVTMAN 471 (476)
Q Consensus 443 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 471 (476)
+.++++++.++++++++|++..++..++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 35789999999999999999766655553
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=2.8e-06 Score=60.95 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC--ChhhHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY--TADHYAC 402 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 402 (476)
+...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++++.+. .+. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 34456667777778888888888888877754 335566777777777888888888888887754 233 5667777
Q ss_pred HHHHHHhc-CChhhHHHHHhhC
Q 038936 403 IVDLLARS-GRFHEAEDVISKM 423 (476)
Q Consensus 403 l~~~~~~~-g~~~~A~~~~~~~ 423 (476)
++.++.+. |++++|.+.++++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888 8888888887775
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=9.5e-07 Score=77.85 Aligned_cols=109 Identities=10% Similarity=-0.033 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh------------------hhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 362 IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA------------------DHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
..+..+...+.+.|++++|+..|+++... .|+. ..|..++.+|.+.|++++|+..++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34667788899999999999999998864 3433 27888999999999999999999986
Q ss_pred -CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhh
Q 038936 424 -PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIY 473 (476)
Q Consensus 424 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 473 (476)
...| +...|..++.+|...|++++|+..|+++++++|+++.++..|+.+.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4444 6779999999999999999999999999999999999999988764
No 183
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=6.8e-06 Score=61.53 Aligned_cols=97 Identities=6% Similarity=-0.054 Sum_probs=72.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACI 403 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 403 (476)
.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++... .+.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 345667777777888888888888888877754 334567777777788888888888888888764 24456677788
Q ss_pred HHHHHhcCChhhHHHHHhhC
Q 038936 404 VDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 404 ~~~~~~~g~~~~A~~~~~~~ 423 (476)
+.++...|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 88888888888888888775
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.39 E-value=2e-06 Score=62.84 Aligned_cols=98 Identities=6% Similarity=-0.111 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLL 407 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (476)
.+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+. .+.+...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 35556677888888888888888888854 235667777888888888888888888888864 244566788888888
Q ss_pred HhcCChhhHHHHHhhC-CCCCc
Q 038936 408 ARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 408 ~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
.+.|++++|+..++++ ...|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 8888888888888875 44443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=4.8e-07 Score=83.78 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=68.2
Q ss_pred HHHHhhhcCChhhHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPR---PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV 377 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (476)
+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33455666677777776666553 234566666666777777777777777766643 22445566666666667777
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhhHHHHHh
Q 038936 378 DKGLQYFHSIKEKHGLTYTADHYACIVDL--LARSGRFHEAEDVIS 421 (476)
Q Consensus 378 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 421 (476)
++|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777666542 2233344444444 666666666666666
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.39 E-value=5.9e-07 Score=67.54 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=54.3
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh----------hhHHHHHhhC-CCCC-cHHHHHHHHHHHHhc
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF----------HEAEDVISKM-PMKP-DKFLWASLLGGCRIH 442 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 442 (476)
+.+++|++.+++..+. .|.+...|..++.++...+++ ++|+..|+++ .+.| +...|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3444444444444432 133444444444444444433 3555555553 3333 344555566665554
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 443 -----------GNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 443 -----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
|++++|++.|+++++++|+++.....+-
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5899999999999999999876655543
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=7.5e-06 Score=62.17 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (476)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|+..++++... .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4566777888888889999999999888874 355 567777888888889999999998888865 24456778
Q ss_pred HHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHH
Q 038936 401 ACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLL 436 (476)
Q Consensus 401 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 436 (476)
..++.++...|++++|.+.|+++ ...| +...+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 88888889999999999888885 3334 344444443
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=3e-06 Score=78.44 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=52.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 335 GYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
.+.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|++.++++.+. .+.+...+..++.+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3445555555555555555532 123445555555555555555555555555542 2233444555555555555555
Q ss_pred hHHHHHhhC-CCCC-cHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 038936 415 EAEDVISKM-PMKP-DKFLWASLLGG--CRIHGNLDLAKRAAEA 454 (476)
Q Consensus 415 ~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 454 (476)
+|++.++++ ...| +...+..+..+ +...|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 555555543 1122 12223333333 4444555555555443
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=4.1e-06 Score=77.16 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=89.8
Q ss_pred hhhHHHHHHHhhhcCChhhHHHHHccCCC--CC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038936 295 SFAASALVHMYSKCGNVENSKKVFNGMPR--PD----------------LVSWTSLIAGYAQNGMPDKALEYFELLLKSG 356 (476)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 356 (476)
...+..+...+.+.|++++|...|+++.+ |+ ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45566777778888888888888887663 32 3677778888888888888888888888764
Q ss_pred CCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH-HHhhC
Q 038936 357 TQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED-VISKM 423 (476)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 423 (476)
+.+...|..+..+|...|++++|+..|+++.+. .+.+...+..+..++.+.|+.++|.+ .+.+|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777888888888888888888888753 23355667778888888887777664 44444
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.4e-06 Score=61.26 Aligned_cols=75 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHHHHH
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPEN------PATYVTMA 470 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~ 470 (476)
.+..++..+.+.|++++|++.++++ ...| +...+..++.++...|++++|+..++++++++|++ ..++..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 3444444455555555555555443 1122 34445555555555555555555555555555555 44444444
Q ss_pred Hhh
Q 038936 471 NIY 473 (476)
Q Consensus 471 ~~y 473 (476)
.++
T Consensus 86 ~~~ 88 (111)
T 2l6j_A 86 LAQ 88 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 191
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=6.1e-06 Score=61.02 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC---hhhHHH
Q 038936 329 WTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH---IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT---ADHYAC 402 (476)
Q Consensus 329 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 402 (476)
+..+...+...|++++|+..|+++.+... .+. ..+..+..++...|++++|...++++.... +.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 34456667788888888888888877532 122 366667777888888888888888887652 223 456777
Q ss_pred HHHHHHhcCChhhHHHHHhhC
Q 038936 403 IVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 403 l~~~~~~~g~~~~A~~~~~~~ 423 (476)
++.++.+.|++++|...|+++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888888775
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=1.5e-06 Score=63.21 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhH
Q 038936 339 NGMPDKALEYFELLLKSGT--QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 416 (476)
.|++++|+..|++.++.+. +.+...+..+..++...|++++|+..++++.+. .|.+...+..++.++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666777777777766431 123345666666777777777777777777754 234456666777777777777777
Q ss_pred HHHHhhC
Q 038936 417 EDVISKM 423 (476)
Q Consensus 417 ~~~~~~~ 423 (476)
+..++++
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=4e-06 Score=64.78 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-cHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCC----Chh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSG----TQP-DHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTY----TAD 398 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 398 (476)
++..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++++|.+.+++..+...-.. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 55666677777777777777777765421 111 133566677777788888888888877764321111 134
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+..++..+...|++++|.+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5667778888888888888877763
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=1.7e-05 Score=59.36 Aligned_cols=120 Identities=13% Similarity=-0.020 Sum_probs=97.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhh
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLAR----SGRFHE 415 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 415 (476)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -++.....|+..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 34433 777788888899999999999874 356778889999988 899999
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 416 AEDVISKMPMKPDKFLWASLLGGCRI----HGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 416 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
|.+.|++.-...++..+..+...|.. .+++++|...|+++.+... +.+...|+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l~ 136 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGILN 136 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHh
Confidence 99999997434577888888888888 7999999999999999854 44555544
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=1.2e-05 Score=62.24 Aligned_cols=100 Identities=7% Similarity=0.025 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--------CC---------CCcHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKS--------GT---------QPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.+......+.+.|++++|+..|++.++. .. +.+...|..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666777777788777777777664 10 112356777888888999999999999988875
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcH
Q 038936 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDK 429 (476)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 429 (476)
.+.+...|..++.+|...|++++|+..|+++ ...|+.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 3556778888999999999999999998885 455643
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=9.8e-06 Score=74.53 Aligned_cols=124 Identities=9% Similarity=-0.059 Sum_probs=92.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCc----HHHHHHHHHHHhccCchhhHHHHHHHHHHhc--CCC---C-ChhhHH
Q 038936 335 GYAQNGMPDKALEYFELLLKSG---TQPD----HIVFVGVLTACTHAGLVDKGLQYFHSIKEKH--GLT---Y-TADHYA 401 (476)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~~~ 401 (476)
.+...|++++|+.++++.++.. +.|+ ..+++.|+.+|...|++++|..+++++++-. -+. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567889999999888876531 2222 2468888899999999999999988876521 112 2 245578
Q ss_pred HHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038936 402 CIVDLLARSGRFHEAEDVISKM---------PMKPDKF-LWASLLGGCRIHGNLDLAKRAAEALFEI 458 (476)
Q Consensus 402 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 458 (476)
.|+.+|..+|++++|+.+++++ +..|+.. +...+..++...|.+++|+..|+++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988875 3445544 4566667777889999999999999873
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=9.6e-06 Score=58.58 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 396 TADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 396 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
+...+..++.+|...|++++|+..|+++ ...| +...|..++.++...|++++|...+++++++.|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3344444455555555555555555443 1122 334445555555555555555555555555544
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=5.5e-06 Score=59.32 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC-------hh
Q 038936 326 LVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT-------AD 398 (476)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 398 (476)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|++.++++.+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 4456667777888888888888888887753 335667777777888888888888888888743 343 45
Q ss_pred hHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 399 HYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 399 ~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.+..++.++...|++++|++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5666777777777777777666655
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=1.8e-05 Score=70.43 Aligned_cols=122 Identities=10% Similarity=-0.018 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKS---------------GTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHG 392 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 392 (476)
.+..+...+.+.|++++|+..|++.++. --+.+...|..+..++.+.|++++|++.++++.+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 4667777888889999999888888761 01123457788888899999999999999999863
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHH
Q 038936 393 LTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRA 451 (476)
Q Consensus 393 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 451 (476)
.+.+...+..++.+|...|++++|++.|+++ ...| +...+..+...+...++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778889999999999999999999886 4444 566777777777777777766543
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=2.9e-05 Score=58.50 Aligned_cols=96 Identities=17% Similarity=0.018 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------cH-----HHHHHHHHHHhccCchhhHHHHHHHHHHh----cC
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQP------DH-----IVFVGVLTACTHAGLVDKGLQYFHSIKEK----HG 392 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 392 (476)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..++++++. ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556677888899999999999888753220 22 37888889999999999999999999863 01
Q ss_pred -CCCChhhH----HHHHHHHHhcCChhhHHHHHhhC
Q 038936 393 -LTYTADHY----ACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 393 -~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.|.+...| ...+.++...|++++|+..|+++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 23356678 89999999999999999999986
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=2.5e-05 Score=71.86 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=79.8
Q ss_pred HHhccCchhhHHHHHHHHHHhcC--CCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-HHH
Q 038936 370 ACTHAGLVDKGLQYFHSIKEKHG--LTY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPDKF-LWA 433 (476)
Q Consensus 370 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 433 (476)
.+..+|++++|+.++++..+... +.| ...+++.|+.+|...|++++|..+++++ +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999998876422 122 3456889999999999999999998875 3456544 789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFE-----IEPENPATYVT 468 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 468 (476)
.++..|...|++++|+.+++++++ +.|++|.+-..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 437 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999997 67888776543
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.01 E-value=2.5e-05 Score=70.55 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=75.0
Q ss_pred ccCchhhHHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-HHHHHH
Q 038936 373 HAGLVDKGLQYFHSIKEKH--GLTY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPDKF-LWASLL 436 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~ 436 (476)
..|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++ +..|+.. +++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578889999888877632 1222 2456788899999999999999888875 3456554 789999
Q ss_pred HHHHhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 038936 437 GGCRIHGNLDLAKRAAEALFE-----IEPENPATYVT 468 (476)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 468 (476)
..|...|++++|+.+++++++ +.|++|.+-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999998 67888766553
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=6.1e-05 Score=68.19 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=77.5
Q ss_pred HHHHhccCchhhHHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCChhhHHHHHhhC---------CCCCcHH-H
Q 038936 368 LTACTHAGLVDKGLQYFHSIKEKH--GLTY----TADHYACIVDLLARSGRFHEAEDVISKM---------PMKPDKF-L 431 (476)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~ 431 (476)
+..+..+|++++|++++++..+.. -+.| ...+++.++.+|...|++++|+.+++++ +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667788999999988887532 1222 2456788888999999999999888875 3456544 7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCchhHHH
Q 038936 432 WASLLGGCRIHGNLDLAKRAAEALFE-----IEPENPATYVT 468 (476)
Q Consensus 432 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 468 (476)
++.++..|...|++++|+.+++++++ +.|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999998 67888766544
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.93 E-value=4.5e-05 Score=53.15 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHhccCchhhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhhHHHHHhh
Q 038936 369 TACTHAGLVDKGLQYFHSIKEKHGLTYTAD-HYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
..+...|++++|++.++++.+. .+.+.. .+..++.+|...|++++|++.|++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444455555555555555443 122333 444444444455555555544444
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=1.5e-05 Score=55.86 Aligned_cols=64 Identities=9% Similarity=-0.076 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038936 397 ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEP 460 (476)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 460 (476)
...+..++.+|.+.|++++|++.|+++ ...| +...|..++.++...|++++|+..+++++++.|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 334444444444444444444444443 1122 233444444445555555555555555554443
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=6.2e-05 Score=55.92 Aligned_cols=93 Identities=16% Similarity=0.040 Sum_probs=69.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhhHHHHHhhC-CCC-C--cHHHHHHHHHHHHhcCChHH
Q 038936 375 GLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSG---RFHEAEDVISKM-PMK-P--DKFLWASLLGGCRIHGNLDL 447 (476)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 447 (476)
+....+.+.|.+.... -+++..+...+++++.+.+ ++++++.+|++. ... | +...+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3445566666666543 2477888888888888888 566888888875 333 5 35567778888999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHH
Q 038936 448 AKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 448 A~~~~~~~~~~~p~~~~~~~~l 469 (476)
|.+.++++++.+|+|..+....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999998776553
No 207
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.88 E-value=0.00011 Score=51.62 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 038936 427 PDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMA 470 (476)
Q Consensus 427 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 470 (476)
+....+..++.++.+.|+++.|...++++++++|+++.+..++.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 35667888999999999999999999999999999988877776
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=7.1e-05 Score=52.28 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
++..+..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|++.+++..+...-.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 34556666667777777777777777776653 22345566666777777777777777776665322233444444444
Q ss_pred HHHHh
Q 038936 405 DLLAR 409 (476)
Q Consensus 405 ~~~~~ 409 (476)
..+.+
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.86 E-value=0.00069 Score=58.71 Aligned_cols=143 Identities=14% Similarity=0.050 Sum_probs=94.3
Q ss_pred CChhhHHHHHHH--HHhcC---ChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhc---cC-----chhhHHHHHHHHHH
Q 038936 324 PDLVSWTSLIAG--YAQNG---MPDKALEYFELLLKSGTQPDH-IVFVGVLTACTH---AG-----LVDKGLQYFHSIKE 389 (476)
Q Consensus 324 ~~~~~~~~l~~~--~~~~~---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~ 389 (476)
.+...|...+.+ +...+ +..+|..+|++.++. .|+. ..+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666655 33333 347889999999885 4553 334433333321 11 11111122222211
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 390 KHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 390 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
....+.+..++..++..+...|++++|...++++ ...|+...|..++..+...|++++|.+.|++++.++|..+ +|.-
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 1233667778888888888889999999999996 4558888888888889999999999999999999999764 4443
Q ss_pred H
Q 038936 469 M 469 (476)
Q Consensus 469 l 469 (476)
.
T Consensus 349 ~ 349 (372)
T 3ly7_A 349 I 349 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=5.2e-05 Score=54.62 Aligned_cols=60 Identities=17% Similarity=0.011 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
.+..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444432 1123334444444444444444444444444
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00032 Score=66.14 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=109.8
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCc----------hhhHHHHHHHHHHhcCCCCChhhHHHHH
Q 038936 337 AQNGM-PDKALEYFELLLKSGTQPD-HIVFVGVLTACTHAGL----------VDKGLQYFHSIKEKHGLTYTADHYACIV 404 (476)
Q Consensus 337 ~~~~~-~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 404 (476)
.+.|. .++|++.+++++..+ |+ ...|+.-..++...|+ +++++++++++.+. .+-+..+|..-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34444 478899999999964 54 4456665666666666 89999999999975 466788899999
Q ss_pred HHHHhcC--ChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 405 DLLARSG--RFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHG-NLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 405 ~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
.++.+.| +++++++.++++ ...| +...|+.-...+...| .++++++.++++++.+|.|..+|...+.++.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 9999999 679999999997 3333 7788988888888888 8999999999999999999999999998764
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.00023 Score=53.18 Aligned_cols=109 Identities=9% Similarity=-0.085 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHH
Q 038936 274 AAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR-PDLVSWTSLIAGYAQ----NGMPDKALEY 348 (476)
Q Consensus 274 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~ 348 (476)
+++++|...++...+.| .+... +...|...+.+++|...|++..+ .++..+..+...|.. .+++++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34555555555555554 22221 44444444555555555554432 345555556666665 5667777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhc----cCchhhHHHHHHHHHHh
Q 038936 349 FELLLKSGTQPDHIVFVGVLTACTH----AGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 390 (476)
|++..+.| +...+..|...|.. .+++++|.++|++..+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 77776654 34455556666655 66777777777766653
No 213
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00024 Score=48.28 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDL 406 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (476)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 345555566666666666666666666543 224455556666666666666666666666653 13344455555555
Q ss_pred HHhc
Q 038936 407 LARS 410 (476)
Q Consensus 407 ~~~~ 410 (476)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.77 E-value=3.2e-06 Score=74.49 Aligned_cols=212 Identities=10% Similarity=0.115 Sum_probs=141.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHH
Q 038936 23 HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGF 102 (476)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 102 (476)
..|+..|..++....+.|.+++-.+++....+..- ++..=+.|+-+|++.++..+-.+++. .||..-...+.+-|
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 35666778888888888888888888876666533 44444578888888887665443322 26666666777777
Q ss_pred HhcCCHHHHHHHHhcCC------------------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Q 038936 103 TKGGSLEQARNLFDEMP------------------------QRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSN 158 (476)
Q Consensus 103 ~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (476)
...|.++.|.-+|..+. ..++.+|-.+-.+|...+.+.-|.-.--.+.-+..
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad---- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS----
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH----
Confidence 77777777777776654 13778899999999999988877666555543111
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-----------cchhh
Q 038936 159 KFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-----------RDVVS 227 (476)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~ 227 (476)
....++..|-..|.+++...+++..+... ......|+-|.-.|++- ++++..+.++.... .....
T Consensus 231 --eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 --ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp --CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 12345566777888888888877765321 34566778888777765 44444444443322 13456
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 038936 228 WTAMIGRYFQEGRREEGFAL 247 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~ 247 (476)
|..++-.|.+-.+++.|...
T Consensus 307 W~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 88888888888888876543
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.57 E-value=4.7e-06 Score=73.50 Aligned_cols=237 Identities=10% Similarity=0.096 Sum_probs=149.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 038936 92 VCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSA 171 (476)
Q Consensus 92 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 171 (476)
+..|..|..+..+.|.+.+|++-|- +..|+..|..++....+.|.+++-++.+.-.++ ... +...=+.++.++++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCC--STTTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hhc--ccccHHHHHHHHHh
Confidence 4456666777666666666655442 234556666677777777777777666655443 222 22333466666666
Q ss_pred hhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc------------------------cchhh
Q 038936 172 IQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD------------------------RDVVS 227 (476)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~ 227 (476)
.++..+.++++. .|+..-...+++-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 666555444431 24443445566666677777777666665521 36678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhh
Q 038936 228 WTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSK 307 (476)
Q Consensus 228 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (476)
|..+-.+|...+++.-|--.--.++- .|| -...++..|...|.+++.+.+++...... .....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 99999999999988877655444442 222 22234556778888888888888776443 4566778888777776
Q ss_pred cCChhhHHHHHccCCC-----------CChhhHHHHHHHHHhcCChHHHHH
Q 038936 308 CGNVENSKKVFNGMPR-----------PDLVSWTSLIAGYAQNGMPDKALE 347 (476)
Q Consensus 308 ~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~ 347 (476)
- ++++..+.++.... .....|.-++-.|.+-.+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 56666666654432 244568888888888888887754
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.55 E-value=6.6e-05 Score=52.28 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHI-VFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
..+...|++++|+..+++..+.. +.+.. .+..+..++...|++++|++.|+++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555554432 11223 444444455555555555555555544
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=0.00012 Score=55.05 Aligned_cols=40 Identities=5% Similarity=-0.225 Sum_probs=21.2
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChh
Q 038936 272 DHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVE 312 (476)
Q Consensus 272 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (476)
+.+.+++|.+.++...+.. +.+...+..+..++...++++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccc
Confidence 3445555666666555554 445555555555555555443
No 218
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.54 E-value=0.0017 Score=46.29 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=70.9
Q ss_pred ccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh---HHHHHhhC-CCC-C--cHHHHHHHHHHHHhcCCh
Q 038936 373 HAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE---AEDVISKM-PMK-P--DKFLWASLLGGCRIHGNL 445 (476)
Q Consensus 373 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~ 445 (476)
.......+.+.|.+.... + .++..+-..+++++.+..+..+ ++.+++.+ ... | .......+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 344555666666666554 3 4788888888999998887665 88888885 333 4 334556677789999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHH
Q 038936 446 DLAKRAAEALFEIEPENPATYVTM 469 (476)
Q Consensus 446 ~~A~~~~~~~~~~~p~~~~~~~~l 469 (476)
++|.+.++.+++.+|+|..+....
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999998776544
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.51 E-value=0.00056 Score=46.66 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=52.0
Q ss_pred CCChhhHHHHHHHHHhcCC---hhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 394 TYTADHYACIVDLLARSGR---FHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENP 463 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 463 (476)
+.++..+..++.++...++ .++|..+++++ ...| ++..+..++..+...|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566777777777765444 67888888875 3444 566777778888888999999999999888888743
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.38 E-value=0.017 Score=57.51 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=96.0
Q ss_pred HHHHhcCChhHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHH
Q 038936 34 QFCRQNRALEEGKK-VHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQAR 112 (476)
Q Consensus 34 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 112 (476)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. + ..-.......|++++|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHH
Confidence 33456778888766 4421 1 1122236677777888888888876532 1 11234456789999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCc
Q 038936 113 NLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDS 192 (476)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (476)
++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++-+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 9887763 557889999999999999999999998875 44555555556655555555444444431
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038936 193 DEVVWSALSDMYGKCGSINEARQIFD 218 (476)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 218 (476)
++....+|.+.|++++|++++.
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHH
Confidence 2223334445566666655543
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.38 E-value=0.0083 Score=52.08 Aligned_cols=72 Identities=7% Similarity=0.008 Sum_probs=42.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhH
Q 038936 324 PDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHY 400 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (476)
.++..|..+...+...|++++|+..++++...+ |+...|..+...+...|++++|.+.++++... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChH
Confidence 344555555555555566666666666666643 55555555566666666666666666666643 4444443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.004 Score=56.39 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=64.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHHhc--CCC---C-Chhh
Q 038936 333 IAGYAQNGMPDKALEYFELLLKSG---TQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKEKH--GLT---Y-TADH 399 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~ 399 (476)
+..+.+.|++++|+.++++.++.. +.|+. .+++.++.+|...|++++|+.+++++.+-. -+. | ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888888887531 22322 367788888888899988888888776421 112 2 2345
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
++.|+..|...|++++|+.+++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 778888899999999888888775
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0025 Score=57.57 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 327 VSWTSLIAGYAQNGMPDKALEYFELLLKS-----G-TQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
.+++.+...|...|++++|+.++++.++- | -.|+. .+++.|...|..+|++++|..+++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 35666777777777777777777766532 2 11222 3577777788888888888888777664
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.021 Score=56.87 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=106.8
Q ss_pred hhhcCCHHHHHH-HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 5 LCNQRRLKEALQ-ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 5 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
....+++++|.+ ++..++ +......+++.+.+.|.++.|.++.+. . ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHH
Confidence 345688888877 553333 133347778888889999998876532 1 1123455678999999999
Q ss_pred HHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHH
Q 038936 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLS 163 (476)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (476)
.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+...
T Consensus 675 ~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~------------- 734 (814)
T 3mkq_A 675 LTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAE------------- 734 (814)
T ss_dssp HTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred HHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHH-------------
Confidence 8775 3457899999999999999999999887654 3344444455555555444433333
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD 222 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 222 (476)
..|++..|...+-.. | -+...++.|.+.+++++|..+-+....
T Consensus 735 -------~~~~~~~A~~~~~~~---g------~~~~a~~~~~~~~~~~~A~~lA~~~~~ 777 (814)
T 3mkq_A 735 -------TTGKFNLAFNAYWIA---G------DIQGAKDLLIKSQRFSEAAFLGSTYGL 777 (814)
T ss_dssp -------HTTCHHHHHHHHHHH---T------CHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred -------HcCchHHHHHHHHHc---C------CHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 334444444443221 1 122345556667777777777766543
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.087 Score=40.21 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=42.9
Q ss_pred hcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHH
Q 038936 104 KGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHG 183 (476)
Q Consensus 104 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 183 (476)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.+...|+.+...++-+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHH
Confidence 344444444443333 2233444444444444444444444444433 3333333333444433333333
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 038936 184 YIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKM 220 (476)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 220 (476)
.....| -++.....+...|+++++.++|.+.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333333 1233333444556666666666544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.14 Score=39.11 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=78.8
Q ss_pred hhhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038936 5 LCNQRRLKEALQILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLF 84 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (476)
..+.|+++.|.++.+.+ .+...|..+.....++|+++-|.++|..... +..+.-.|.-.|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45678888888887776 5677888888888888888888888876544 445556666677776666554
Q ss_pred HHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 85 DEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMM 149 (476)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 149 (476)
+.....+ -++.....+.-.|+++++.++|.+..+.+ --.......|..+.|.++.+++
T Consensus 84 ~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 4433221 23444445556778888877776654321 1111112245555666666554
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.56 E-value=0.021 Score=40.91 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCh---hhHHHHHhhC-CCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 038936 392 GLTYTADHYACIVDLLARSGRF---HEAEDVISKM-PMKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 392 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
+-.|+..+-..+++++.+..+. .+++.+++.+ ...| ....+-.+.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3456777777788888877764 3566777664 2334 24456667777899999999999999999999998776
Q ss_pred HHH
Q 038936 466 YVT 468 (476)
Q Consensus 466 ~~~ 468 (476)
...
T Consensus 115 ~~L 117 (134)
T 3o48_A 115 GAL 117 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.54 E-value=0.063 Score=39.00 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCChhhHHHHHHHHHhcCCh---hhHHHHHhhC-CCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 038936 394 TYTADHYACIVDLLARSGRF---HEAEDVISKM-PMKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYV 467 (476)
Q Consensus 394 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 467 (476)
.|+..+-..+++++.+..+. .+++.+++.+ ...| .......+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 57777777888888887764 4566777765 2233 3345556677799999999999999999999999977654
Q ss_pred H
Q 038936 468 T 468 (476)
Q Consensus 468 ~ 468 (476)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.04 Score=37.29 Aligned_cols=64 Identities=5% Similarity=-0.069 Sum_probs=35.7
Q ss_pred ChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 325 DLVSWTSLIAGYAQNGM---PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 325 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++..+..+..++...++ .++|..++++.++.. +-+......+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555443333 466666666666643 22344555555666666666666666666664
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.47 E-value=0.0082 Score=41.89 Aligned_cols=58 Identities=5% Similarity=-0.047 Sum_probs=27.8
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 366 GVLTACTHAGLVDKGLQYFHSIKEKHG-----LTYTADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 366 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
.++..+...|+++.|...|+.+.+... -.+...++..++.++.+.|++++|...++++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444555555555555555444321 1123344555555555555555555555553
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.46 E-value=0.023 Score=42.23 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhhH
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTY--TADHYACIVDLLARSGRFHEA 416 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 416 (476)
...+.+.|.+..+.|. ++..+...+..++.+.+ ++++++.+++...+. . .| ..+.+..++.++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666654 67777767788888877 777899999988876 2 24 466778888889999999999
Q ss_pred HHHHhhC-CCCCc
Q 038936 417 EDVISKM-PMKPD 428 (476)
Q Consensus 417 ~~~~~~~-~~~p~ 428 (476)
.+.++.+ ...|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999886 55564
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.37 E-value=0.075 Score=38.95 Aligned_cols=96 Identities=16% Similarity=0.302 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCcHH----HHHHHH--H-HHhccCchhhHHHHHHHHHHh
Q 038936 324 PDLVSWTSLIAGYAQNGMP------DKALEYFELLLKSGTQPDHI----VFVGVL--T-ACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~----~~~~l~--~-~~~~~~~~~~a~~~~~~~~~~ 390 (476)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+- . .+...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666666 6666666666654 444421 011000 0 112335556666666555543
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhhHHHHHhh
Q 038936 391 HGLTYTADHYACIVDLLARSGRFHEAEDVISK 422 (476)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 422 (476)
.-.- ..+|...++.-.++|++..|.+++.+
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1111 44444444444555555555555554
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.10 E-value=1.3 Score=43.95 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=140.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc-cc--------h--hhHHHHHHH
Q 038936 168 AVSAIQCLRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD-RD--------V--VSWTAMIGR 234 (476)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--------~--~~~~~l~~~ 234 (476)
+....|+.+.+..++...+..+ -.+....-..+.-+....|..+++..++..... ++ . ..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445667777777776655421 123334444455555666666677776666543 22 1 112223333
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCCh
Q 038936 235 YFQEGR-REEGFALFSELIKSGIRPNAFTFA--GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNV 311 (476)
Q Consensus 235 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (476)
.+..|. -+++...+..+.... .+...... .+...+...|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333333 245666666666532 11111112 22223456677777777777766532 22222222333444466777
Q ss_pred hhHHHHHccCCC-CChh-hHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHH
Q 038936 312 ENSKKVFNGMPR-PDLV-SWT---SLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHS 386 (476)
Q Consensus 312 ~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 386 (476)
+.+..+++.+.. .++. -|. ++..+|+..|+......+++.+.+.. ..+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777666552 3332 222 34456778888777777888887642 22333333333345556776666666655
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCh-hhHHHHHhhCCCCCcHHHHHHHHHHHH
Q 038936 387 IKEKHGLTYTADHYACIVDLLARSGRF-HEAEDVISKMPMKPDKFLWASLLGGCR 440 (476)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~ 440 (476)
+.+. ..|....-..++.+....|.. .+++..+..+...+|..+-...+.++.
T Consensus 620 L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 620 LSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp GGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5532 234444344444455555554 578888888865666655544444433
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.013 Score=48.64 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcc-----CchhhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc-C
Q 038936 343 DKALEYFELLLKSGTQPD---HIVFVGVLTACTHA-----GLVDKGLQYFHSIKEKHGLTY--TADHYACIVDLLARS-G 411 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g 411 (476)
..|...+++.++. .|+ ...|..+...|... |+.++|.++|+++++- .| +..++..+++.+++. |
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 3455555555553 344 33455555555552 6666666666666643 33 244455555555553 5
Q ss_pred ChhhHHHHHhhC
Q 038936 412 RFHEAEDVISKM 423 (476)
Q Consensus 412 ~~~~A~~~~~~~ 423 (476)
+.++|.+.++++
T Consensus 255 d~~~a~~~L~kA 266 (301)
T 3u64_A 255 NRAGFDEALDRA 266 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 566666666553
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.99 E-value=1.1 Score=42.42 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=74.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 339 NGMPDKALEYFELLLKSGTQPDHIV----FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 339 ~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
..+.+.|...+....+... .+... ...++......+...++...+...... .++.......+....+.|+++
T Consensus 227 r~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred hcCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 3478999999988875432 23322 233333344455355666666765432 344434444555556789999
Q ss_pred hHHHHHhhCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 415 EAEDVISKMPMKP--DKFLWASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 415 ~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
.|.+.|+.++..+ .....--++.++...|+.++|..+|+++.+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999996443 233334455667788999999999999875
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.51 E-value=0.083 Score=39.59 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCcH-------HHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSG-TQPDH-------IVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...|++.+|...|++++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445556666666666555543221 11221 2445566666677777777777766543
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.37 E-value=0.49 Score=33.96 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=82.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhH
Q 038936 235 YFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENS 314 (476)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (476)
..-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 33456667777777766653 23344444444333333444444444443322 11 1234444444
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCC
Q 038936 315 KKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGL 393 (476)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 393 (476)
...+-.+.. +.......+..+..+|+-+.-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 444443332 3344455677788888888888888886443 4677788888888888888888888888888765 54
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.07 E-value=0.29 Score=35.91 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHHhccCch------hhHHHHHHHHHHhcCCCCChhh-HHHHHH------HHHhcCChhhHHHHHhhC-C
Q 038936 359 PDHIVFVGVLTACTHAGLV------DKGLQYFHSIKEKHGLTYTADH-YACIVD------LLARSGRFHEAEDVISKM-P 424 (476)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~-~ 424 (476)
-|..+|...+....+.|++ ++..++|+++.. .+||+... |...+. .+...++.++|.++|+.+ .
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3555666666666666777 788888888887 45665321 222221 123558899999999886 1
Q ss_pred -CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 038936 425 -MKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVT 468 (476)
Q Consensus 425 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 468 (476)
.+-=...|.....--.+.|+.+.|.+++.+++.+.|.....+..
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 11126677777777778899999999999999998876554443
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.91 Score=41.20 Aligned_cols=185 Identities=9% Similarity=0.070 Sum_probs=108.2
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHH----hhhc
Q 038936 238 EGRREEGFALFSELIKS-----GIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHM----YSKC 308 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 308 (476)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+..... ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888887766543 234445567778888889999998888776665442122 1222233322 2222
Q ss_pred CChh--hHHHHHccCCC---CC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCc---HHHHHHHHHHH
Q 038936 309 GNVE--NSKKVFNGMPR---PD-------LVSWTSLIAGYAQNGMPDKALEYFELLLKS--GTQPD---HIVFVGVLTAC 371 (476)
Q Consensus 309 ~~~~--~a~~~~~~~~~---~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 371 (476)
...+ .-..+.+.... .- ......|...|...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333322 11 112355677788888898888888887643 21111 12455566778
Q ss_pred hccCchhhHHHHHHHHHHhc-CCCCC----hhhHHHHHHHHHhcCChhhHHHHHhhC
Q 038936 372 THAGLVDKGLQYFHSIKEKH-GLTYT----ADHYACIVDLLARSGRFHEAEDVISKM 423 (476)
Q Consensus 372 ~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 423 (476)
...+++.+|..++.++.... ..+++ ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888888765321 11222 223455667777788888777765554
No 240
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.70 E-value=1.2 Score=35.04 Aligned_cols=118 Identities=8% Similarity=0.078 Sum_probs=57.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHH
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYN 96 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 96 (476)
+++.+..+++..-...+..+.+.+..+....+. .+.. .++...-...+..+...|..+....+.+.+..++...-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHH
Confidence 344444566666666666666655533332222 2222 234444444555555555544444444444445555555
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 97 TMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 97 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
..+.++.+.|+.+....+.+.+..+++..-...+.++.+.++
T Consensus 95 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 555555555554444444444444444444444445444444
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.67 E-value=0.21 Score=35.60 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhh---HHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChh
Q 038936 340 GMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDK---GLQYFHSIKEKHGLTY--TADHYACIVDLLARSGRFH 414 (476)
Q Consensus 340 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 414 (476)
.....+.+.|.+....|. |+..+-..+..++.+...... ++.+++.+... + .| .......|+.++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334555666666666554 666666667778877765554 88888887754 2 23 4556677888999999999
Q ss_pred hHHHHHhhC-CCCC
Q 038936 415 EAEDVISKM-PMKP 427 (476)
Q Consensus 415 ~A~~~~~~~-~~~p 427 (476)
+|.+.++.+ ...|
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 999999886 4445
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.63 E-value=0.27 Score=40.96 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcccc-----hhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-ccHHH
Q 038936 210 INEARQIFDKMVDRD-----VVSWTAMIGRYFQE-----GRREEGFALFSELIKSGIRPNAFTFAGVLNACADH-AAEEL 278 (476)
Q Consensus 210 ~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 278 (476)
...|...+++..+-| ...|..+...|... |+.++|...|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 355666666664433 23566666667663 77777777777777754212355566666666663 77777
Q ss_pred HHHHHHHHHHhCCC
Q 038936 279 GKQVHGYMTRIGYD 292 (476)
Q Consensus 279 a~~~~~~~~~~~~~ 292 (476)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777777766443
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.62 E-value=0.84 Score=32.80 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHH
Q 038936 207 CGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
+|++......+-.+- .+....+..+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444443332 23334555677778888888888888876443 3677788888888888999998888888888
Q ss_pred HHhCCC
Q 038936 287 TRIGYD 292 (476)
Q Consensus 287 ~~~~~~ 292 (476)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 888754
No 244
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.53 E-value=1.4 Score=35.00 Aligned_cols=80 Identities=9% Similarity=0.173 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQP 139 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (476)
+...-...+..+...|..+....+.+.+..++...-...+.++.+.|+.+....+.+.+..+++..-...+.++.+.|+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333333444444444333333333333344444444444444444443333344444444444444445555555543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.34 E-value=0.28 Score=36.78 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=75.1
Q ss_pred CCCCcHH--HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhhHHHHHhhC---
Q 038936 356 GTQPDHI--VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTA-------DHYACIVDLLARSGRFHEAEDVISKM--- 423 (476)
Q Consensus 356 ~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 423 (476)
|+.|... ++..-++.+...|.++.|+-+...+....+.+|+. .++..+++++...|++..|...|+++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444433 33334566778888998888877766543344442 35677899999999999999999874
Q ss_pred ----CCCC--------------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 424 ----PMKP--------------------DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 424 ----~~~p--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
...+ +...-..+..+|...|++++|+..++.+-... -.+.....||.+|.
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANLYK 166 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHHCC
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHHhc
Confidence 1111 12333457778889999999999887653222 24567778888774
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.53 E-value=3.2 Score=36.70 Aligned_cols=25 Identities=0% Similarity=-0.219 Sum_probs=13.5
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHH
Q 038936 262 TFAGVLNACADHAAEELGKQVHGYM 286 (476)
Q Consensus 262 ~~~~l~~~~~~~~~~~~a~~~~~~~ 286 (476)
....+...|...|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555566665555555543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.41 E-value=3.2 Score=35.20 Aligned_cols=180 Identities=9% Similarity=0.108 Sum_probs=93.4
Q ss_pred HHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH----H
Q 038936 71 YAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDL----Y 146 (476)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~ 146 (476)
....|++=+|.++++. +..-|.+.+++++|.+++..- ...+.+.|+...|-++ +
T Consensus 23 ~I~~G~yYEAhQ~~Rt-----------l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRT-----------IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHH-----------HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 3445566566554443 555566777777777765432 3344555666555553 2
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHhhhh-hhhHHHHHHHH----HHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 038936 147 RMMQNFENSVSNKFTLSSVLSAVSAIQC-LRLGKEIHGYI----MRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDK 219 (476)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (476)
+...+ .+.+++......++..+..-.. ...-.++++.+ .+.| -..++.....+...|.+.|++.+|+..|-.
T Consensus 81 ev~~~-~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 81 EVYDL-AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHH-TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 22222 4566666655555555433211 11112233333 2232 124667788888999999999999887753
Q ss_pred hcccchhhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH
Q 038936 220 MVDRDVVSWTAMIGRYFQE---GRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288 (476)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 288 (476)
-...++..+..++.-+... |...++ +...-..++ .+...++...|..+++...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3322444444444333332 222221 111111222 34456777888877776543
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.94 E-value=3.8 Score=34.75 Aligned_cols=169 Identities=9% Similarity=0.066 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHhhHHHHHHHH
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFAL----FSELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
..|..+..-|.+.+++++|++++..- ...+.+.|+...|.++ ++-..+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35666777788889999999887543 3345556666555554 44455567788887777777765
Q ss_pred hccccHH-HHHHHHHHHHH----hCC--CCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhc---C
Q 038936 271 ADHAAEE-LGKQVHGYMTR----IGY--DPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQN---G 340 (476)
Q Consensus 271 ~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~ 340 (476)
..-...+ .-.++++.+.+ .|- .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5422111 11233333332 221 235677778888889999999888876533222344444333332222 2
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 341 MPDKALEYFELLLKSGTQPDHIVF-VGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
...++ ..| ...+-.|...|+...|..+++....+
T Consensus 183 ~~~e~----------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV----------------AEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH----------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22221 111 11122355678888888888877654
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.60 E-value=7.2 Score=37.00 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHH----HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHH
Q 038936 240 RREEGFALFSELIKSGIRPNAFTFA----GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSK 315 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (476)
+.+.|...+....+.. ..+..... .+.......+....+...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765443 22222222 1222223334233444444443332 223223333444445667788887
Q ss_pred HHHccCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 316 KVFNGMPRPD---LVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 316 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
..|+.+.... ....-=+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777776522 22222344566677777777777777754
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.53 E-value=6.1 Score=38.32 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=32.2
Q ss_pred HhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhCC
Q 038936 371 CTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKMP 424 (476)
Q Consensus 371 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 424 (476)
|...|+++.|+++-+++... .|.+..+|..|+.+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566666666666666643 34445666666666666666666666666553
No 251
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.49 E-value=3.3 Score=32.82 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=50.2
Q ss_pred hHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 038936 77 ISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSV 156 (476)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (476)
.+....+.+.+..++...-...+..+.+.|+.+....+.+.+..++...-...+.++.+.++.+. ...+..+.. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----~ 92 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK----D 92 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----C
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----C
Confidence 33344444445556666666666667777765555555565666666666666666666665433 333333332 2
Q ss_pred CCchHHHHHHHHHHhhhhh
Q 038936 157 SNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~ 175 (476)
++...-...+.++...++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444444455444443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.41 E-value=2.9 Score=34.30 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=79.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 334 AGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
....+.|+.++|++....-++.. +-|...-..++.-+|-.|++++|.+-++...+. .|+...-..+..-+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 45678899999999998888864 456667777888899999999999998888754 44432222221222221
Q ss_pred hhHH-HHHhhC--C--CCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCchh
Q 038936 414 HEAE-DVISKM--P--MKPDKFLWASLLGGCR--IHGNLDLAKRAAEALFEIEPENPAT 465 (476)
Q Consensus 414 ~~A~-~~~~~~--~--~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 465 (476)
+... ++|.-- + ......-...++.+.. ..|+.++|..+-.++++..|..+..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1122 233221 1 1112223344555544 4599999999999999998876543
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.34 E-value=9.7 Score=37.90 Aligned_cols=251 Identities=10% Similarity=-0.044 Sum_probs=135.7
Q ss_pred HHHHHcCCCHHHHHHHHHhhcc----cchh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCC--C-----CCHhhHHHHH
Q 038936 201 SDMYGKCGSINEARQIFDKMVD----RDVV--SWTAMIGRYFQEGRREEGFALFSELIKSGI--R-----PNAFTFAGVL 267 (476)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~ 267 (476)
.-+....|+.++++.+++.... .+.. .-..+.-+.+..|..+++..++.......- . +....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3445677888899999888765 2222 222334455666666678887777665321 0 1111111222
Q ss_pred HHH--hccccHHHHHHHHHHHHHhCCCCch--hhHHHHHHHhhhcCChhhHHHHHccCCC-CChhh--HHHHHHHHHhcC
Q 038936 268 NAC--ADHAAEELGKQVHGYMTRIGYDPYS--FAASALVHMYSKCGNVENSKKVFNGMPR-PDLVS--WTSLIAGYAQNG 340 (476)
Q Consensus 268 ~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~~ 340 (476)
-++ ...++ +++...+..+.... .+.. ..-..+...+.-.|+-+....++..+.+ .+... .-.+.-++...|
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 222 23334 34455555544432 1111 1222344556667777666666665432 22222 233444566789
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038936 341 MPDKALEYFELLLKSGTQPDHIV--FVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAED 418 (476)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 418 (476)
+.+.+..+.+.+.... .|.... -..+.-+|+..|+.....+++..+... ...++.-...++-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988887631 222221 123455678888987777788887752 23334334444555566788787888
Q ss_pred HHhhCCCC--CcHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 038936 419 VISKMPMK--PDKFLWASLLGGCRIHGNL-DLAKRAAEALF 456 (476)
Q Consensus 419 ~~~~~~~~--p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 456 (476)
+++.+... |.+..-..+..+....|+. .+++..+..+.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 88765323 3333333333334434443 56777777765
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.21 E-value=6.3 Score=40.84 Aligned_cols=163 Identities=8% Similarity=0.000 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhh
Q 038936 96 NTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCL 175 (476)
Q Consensus 96 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 175 (476)
..++..+.+.|..+-+.++..... .++.....+..++...|++++|.+.|.+... +...+......+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~--------- 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLR--------- 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHH---------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhc---------
Confidence 345556667777777776655443 3444555667888889999999999987652 2222211100000
Q ss_pred hhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---c-ch----hhHHHHHHHHHhcCChhHHH
Q 038936 176 RLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---R-DV----VSWTAMIGRYFQEGRREEGF 245 (476)
Q Consensus 176 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~----~~~~~l~~~~~~~~~~~~a~ 245 (476)
. +..+.... ...-..-|..++..+.+.+.++.+.++-....+ + +. ..|..+.+.+...|++++|.
T Consensus 884 -~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 884 -E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp -H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred -c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 0 00111110 111234567777788888888777776655422 1 11 25778888889999999998
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccccHH
Q 038936 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEE 277 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (476)
..+..+.....+ ...+..++..+|..|..+
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 888877655432 344555666666555443
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.99 Score=43.67 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=76.6
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHhccC-chhhHHHHHHHHHHhc-----CCCCC------
Q 038936 332 LIAGYAQNGM-PDKALEYFELLLKSGTQPDHIVF--VGVLTACTHAG-LVDKGLQYFHSIKEKH-----GLTYT------ 396 (476)
Q Consensus 332 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~~-----~~~~~------ 396 (476)
++..+...++ ++.|+.+|+++.+.. |...++ ..++..+...+ +--+|.+++.+..+.. ..++.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3343444555 577999999988864 433332 23333333333 2234555555544310 11211
Q ss_pred -----hhhHHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038936 397 -----ADHYACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEAL 455 (476)
Q Consensus 397 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 455 (476)
......-++.+...|+++-|+++-+++ ...| +..+|..|..+|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112233355677899999999999996 4445 6789999999999999999999888776
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=7.1 Score=35.35 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHhhcc-----c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHH----hcc
Q 038936 208 GSINEARQIFDKMVD-----R----DVVSWTAMIGRYFQEGRREEGFALFSELIKS-GIRPNAFTFAGVLNAC----ADH 273 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~ 273 (476)
|+++.|++.+-.+.+ . .......++..|...|+++...+.+.-+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 678888887766532 1 2334667788899999999988877766543 322 22233344332 222
Q ss_pred ccHHH--HHHHHHHHHHh--C-CCC---chhhHHHHHHHhhhcCChhhHHHHHccCCC----C-C----hhhHHHHHHHH
Q 038936 274 AAEEL--GKQVHGYMTRI--G-YDP---YSFAASALVHMYSKCGNVENSKKVFNGMPR----P-D----LVSWTSLIAGY 336 (476)
Q Consensus 274 ~~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~----~~~~~~l~~~~ 336 (476)
...+. -..+....... | +-. .......|...|...|++.+|..++..+.. . + ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 11121111110 1 001 122345678889999999999999887752 1 1 34566677889
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCcH--HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 038936 337 AQNGMPDKALEYFELLLK----SGTQPDH--IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARS 410 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (476)
...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|... |..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccccc
Confidence 999999999999988743 2222222 2345555556666666655332 55566666667
Q ss_pred CChhhHHHHHhh
Q 038936 411 GRFHEAEDVISK 422 (476)
Q Consensus 411 g~~~~A~~~~~~ 422 (476)
++.......+..
T Consensus 252 ~d~~~~~~~L~~ 263 (445)
T 4b4t_P 252 SDEAKWKPVLSH 263 (445)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 766555444443
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.39 E-value=1.7 Score=31.17 Aligned_cols=71 Identities=6% Similarity=-0.001 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc
Q 038936 357 TQPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
-.|+..+--.+..++.+.. +..+++.+++.+... +..-..+.+..|+.++.+.|++++|.+..+.+ ...|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3456665555566665544 456788888888765 32224666778888899999999999888885 55664
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.13 E-value=1.9 Score=38.33 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH----hcCCCCChhhHHHH
Q 038936 330 TSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE----KHGLTYTADHYACI 403 (476)
Q Consensus 330 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 403 (476)
..++..+...|++.+|+..+..+.... +.+...+..++.++...|+..+|++.|++... ..|+.|+..+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345666777888888888888877653 44666788888888888888888888877543 45777777654433
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.88 E-value=11 Score=38.97 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=115.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCC----C----------------
Q 038936 265 GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPR----P---------------- 324 (476)
Q Consensus 265 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---------------- 324 (476)
.++..+...+..+.+..+... ++.++...-.+..++..+|++++|..+|++... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344555566666655554322 234444445567889999999999999987642 0
Q ss_pred ------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCC
Q 038936 325 ------DLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDH----IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLT 394 (476)
Q Consensus 325 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 394 (476)
-..-|..++..+.+.+.++.++++-+..++....-+. ..|..+.+.+...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123667788888999999999988887765322221 24777888999999999998888776543 3
Q ss_pred CChhhHHHHHHHHHhcCChhhH------------HHHHhh-CC-C-CC-cHHHHHHHHHH-HHhcCChH-HHHHHHHHHH
Q 038936 395 YTADHYACIVDLLARSGRFHEA------------EDVISK-MP-M-KP-DKFLWASLLGG-CRIHGNLD-LAKRAAEALF 456 (476)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~A------------~~~~~~-~~-~-~p-~~~~~~~l~~~-~~~~g~~~-~A~~~~~~~~ 456 (476)
--......|+..++..|..+.- .+++.. +. . .+ +.+.|..++.+ +...|++. .|..+|+++.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3455677787777777665433 333322 11 0 01 11124344444 33445554 5667788887
Q ss_pred Hc
Q 038936 457 EI 458 (476)
Q Consensus 457 ~~ 458 (476)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.85 E-value=4 Score=29.73 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHHHhccC---chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC-CCCCc
Q 038936 358 QPDHIVFVGVLTACTHAG---LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM-PMKPD 428 (476)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 428 (476)
.|+..+--.+..++.+.. +..+++.+++.+... +..-..+....|+.++.+.|++++|.+..+.+ ...|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455555444555555544 445677777777764 22224555667777888888888888877775 44553
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.82 E-value=2.5 Score=28.48 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 342 PDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
.-+..+-++.+....+.|++......+++|.+.+++..|+++++.++.+.+.. ..+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 34556666667777788999999999999999999999999998888774433 445666543
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.65 E-value=3.3 Score=27.72 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-.|- -.+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45566666666655553 3333344456778899999999999999888988887654 4577888888888888887
Q ss_pred cCCCCCHhhHH
Q 038936 254 SGIRPNAFTFA 264 (476)
Q Consensus 254 ~~~~~~~~~~~ 264 (476)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 77 55555554
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.26 E-value=3.6 Score=27.60 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038936 174 CLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALFSELIK 253 (476)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 253 (476)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-.|- -.+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45566666666555553 3333344456678899999999999999988988887664 4567888888888878777
Q ss_pred cCCCCCHhhHH
Q 038936 254 SGIRPNAFTFA 264 (476)
Q Consensus 254 ~~~~~~~~~~~ 264 (476)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555544
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.02 E-value=10 Score=32.49 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHhccCCCCCchHHHHHHHHHHhhh
Q 038936 98 MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLY----RMMQNFENSVSNKFTLSSVLSAVSAIQ 173 (476)
Q Consensus 98 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~ 173 (476)
+..-|.+.+++++|.+++-.- ...+.+.|+...+-++. +-..+ .+.++|......++..+....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCC
Confidence 444456666666666654332 23344445554444433 22222 445555555444444443222
Q ss_pred h-----hhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHH
Q 038936 174 C-----LRLGKEIHGYIMRTG--FDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFA 246 (476)
Q Consensus 174 ~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 246 (476)
. ..-..+.+..-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 1 111111222222223 234566777788888888999888887732222222444444333333322111
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHH
Q 038936 247 LFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTR 288 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 288 (476)
++...-..++ .|...++...|..+++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222222 34455677777776655543
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.95 E-value=3.1 Score=36.90 Aligned_cols=53 Identities=15% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhccc---chhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038936 199 ALSDMYGKCGSINEARQIFDKMVDR---DVVSWTAMIGRYFQEGRREEGFALFSEL 251 (476)
Q Consensus 199 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 251 (476)
.++..+...|++++++..+..+... +...|..++.++.+.|+..+|++.|+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555554444322 2234445555555555555555555443
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.53 E-value=7.5 Score=30.35 Aligned_cols=79 Identities=9% Similarity=0.178 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQ 138 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (476)
+...-...+..+...|..+....+.+.+..++.......+.++.+.|+.+....+.+.+..+++..-...+.++.+.++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3333333344444444433333333333334444444444444444444333333343444444444444444444443
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.44 E-value=2.7 Score=28.34 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..+.++.+-...+-|++....+.+.+|-+.+++..|.++++.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555566666666666666666666666666666655
No 268
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.12 E-value=12 Score=31.12 Aligned_cols=182 Identities=7% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHH--cccc
Q 038936 17 ILHQISHPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI----SDAQTLFDE--MQER 90 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~--~~~~ 90 (476)
+++.+..+++..-...+..+...+.. .+...+..+.+. ++...-...+.++...|.. .....++.. ..++
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK 103 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC
Confidence 33444567777777777778777753 455555555543 4555556666777776643 233344432 2346
Q ss_pred cchHHHHHHHHHHhcCC-----HHHHHHHH-hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHH
Q 038936 91 DVCSYNTMISGFTKGGS-----LEQARNLF-DEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSS 164 (476)
Q Consensus 91 ~~~~~~~l~~~~~~~g~-----~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (476)
+.......+.++.+.|. ...+...+ ..+..+++.+-...+.++...|+.+ +...+..+.. .++...-..
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~ 178 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNW 178 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHH
Confidence 66666666777666552 23444444 4455677777777788888887744 4444444443 244444444
Q ss_pred HHHHHHhhhh-hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCH
Q 038936 165 VLSAVSAIQC-LRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSI 210 (476)
Q Consensus 165 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (476)
.+.++...+. ...+...+..+.+ .++..+....+.++.+.|+.
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCH
Confidence 4444444331 1222222222221 23444444455555555543
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.82 E-value=14 Score=30.48 Aligned_cols=111 Identities=5% Similarity=0.089 Sum_probs=66.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc--cc----chHHHHHHHHHHhcCC
Q 038936 34 QFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE--RD----VCSYNTMISGFTKGGS 107 (476)
Q Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~ 107 (476)
..+.+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+.++...+ |+ ...|..+|.+-...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R-- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence 34567788888888888777765 34677777788888888888888888887764 22 22344444432211
Q ss_pred HHHHHHHHhcCCCC----CcchH-HHHHHHHH--hcCChhHHHHHHHHHHh
Q 038936 108 LEQARNLFDEMPQR----DNFSW-TAMISGYV--RYNQPIEALDLYRMMQN 151 (476)
Q Consensus 108 ~~~a~~~~~~~~~~----~~~~~-~~l~~~~~--~~~~~~~a~~~~~~~~~ 151 (476)
.++|.--..| .+..| ..++.+.. ..|+.++|.++-.++.+
T Consensus 82 ----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 ----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1233322222 22223 33344433 45888888888777755
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.95 E-value=6 Score=28.38 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVD 405 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (476)
+..+-++.+....+.|++......+++|.+.+|+..|+.+++-++.+.+. ...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 45555666667778899999999999999999999999999988887443 3555766643
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.55 E-value=7.2 Score=35.14 Aligned_cols=95 Identities=11% Similarity=-0.034 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHccCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCcHHH--H
Q 038936 296 FAASALVHMYSKCGNVENSKKVFNGMPR------PDLVSWTSLIAGYAQNGMPDKALEYFELLLKS---GTQPDHIV--F 364 (476)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~--~ 364 (476)
.+...+...|.+.|++++|.+.|.++.. .-...+...+..+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556677888888888888888877653 22345666777778888888888887776542 22232221 1
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 365 VGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 365 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222345567777777777776654
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.71 E-value=20 Score=30.70 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHhhHHHHHHHH
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGFALF----SELIKSGIRPNAFTFAGVLNAC 270 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~ 270 (476)
.+|..+..-|.+.+++++|++++-.- ...+.+.|+...+.++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35666777788999999999887443 33455556655554443 4455567778877777777666
Q ss_pred hccccHH-HHHHHHHHHHH----hC--CCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChH
Q 038936 271 ADHAAEE-LGKQVHGYMTR----IG--YDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPD 343 (476)
Q Consensus 271 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 343 (476)
......+ .=..+++.+++ .| ..-++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 5433211 11223333322 23 22356677778889999999999988875333333355544444333333221
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 038936 344 KALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKE 389 (476)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 389 (476)
++ +... ...+--|...+++..|..+++...+
T Consensus 185 e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 1111 1122235566788888777666554
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.10 E-value=9.2 Score=25.66 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 275 AEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLK 354 (476)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (476)
..++|..+-+.+...+. ...+--.-+..+...|+|++|..+.+...-||...|-++- -.+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45666666666655542 2222222234567889999999998888888888887664 3567777888877777777
Q ss_pred cCCCCcHHHH
Q 038936 355 SGTQPDHIVF 364 (476)
Q Consensus 355 ~~~~~~~~~~ 364 (476)
.| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4444444
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.51 E-value=20 Score=32.27 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCchhhHHHHHHHHHHh
Q 038936 328 SWTSLIAGYAQNGMPDKALEYFELLLKSGTQPD--HIVFVGVLTACTHAGLVDKGLQYFHSIKEK 390 (476)
Q Consensus 328 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 390 (476)
+...+...|.+.|++++|.+.+.++...-..+. ...+...++.+...+++..+...+.++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455677777777777777777777766432222 234556666777777777777777776543
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.58 E-value=6.8 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHccc---ccchHHHHHHH
Q 038936 44 EGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQE---RDVCSYNTMIS 100 (476)
Q Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 100 (476)
+..+-++.+...++-|++....+.+.+|-+.+++..|.++|+.++. +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 4455555555556666777777777777777777777777766653 22334554443
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.89 E-value=32 Score=29.88 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHHHHHhhhcCChhhHHHHHccCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038936 298 ASALVHMYSKCGNVENSKKVFNGMPRPDL---VSWTSLIAGYAQNGM--PDKALEYFELLLKSGTQPDHIVFVGVL 368 (476)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 368 (476)
...++.-|...|+.++|...++++..|.. .+...+..++-+.++ .+....++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 35677778888889999988888876642 233344444444333 345777777787777655544443333
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.14 E-value=29 Score=27.05 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=24.4
Q ss_pred hHHHHHHHHHcccc-----cchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH
Q 038936 77 ISDAQTLFDEMQER-----DVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMI 130 (476)
Q Consensus 77 ~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 130 (476)
..++..+|..|... -...|......+...|++.+|.++|+.-.+........|.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 44444555444432 1223444444445555555555555554444443333333
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.66 E-value=18 Score=24.37 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=20.4
Q ss_pred HhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038936 72 AKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEM 118 (476)
Q Consensus 72 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 118 (476)
...|++++|..+.+...-||...|.+|... +.|-.+++...+.++
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 344555555555555444555444444332 334444444444333
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.94 E-value=17 Score=29.35 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=41.6
Q ss_pred hhhhhhcCCHHHHHHHHHhcC------CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038936 2 IDILCNQRRLKEALQILHQIS------HP----SPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMY 71 (476)
Q Consensus 2 i~~~~~~~~~~~A~~~~~~~~------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 71 (476)
|+.+....++++|++++++.. ++ ....-...+..-.....-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 456777778888888777662 11 111112222222222233333333444422 33444455556666
Q ss_pred HhcCChHHHHHHHHH
Q 038936 72 AKCGNISDAQTLFDE 86 (476)
Q Consensus 72 ~~~g~~~~A~~~~~~ 86 (476)
.+.|+.++|.++|-+
T Consensus 102 ~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHH
Confidence 677777777776665
No 280
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=69.47 E-value=20 Score=27.68 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred hhhHHHHHhhCCCCCcHH-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHh
Q 038936 413 FHEAEDVISKMPMKPDKF-------LWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANI 472 (476)
Q Consensus 413 ~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 472 (476)
++.|+.+|+.+...-+.. .-...+..|.+.|.+++|.+++++.+.-+|++.....-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 355666666663221111 112333457777888888888888777776666666655554
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.21 E-value=17 Score=33.37 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhCCCC----CcH--HHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038936 400 YACIVDLLARSGRFHEAEDVISKMPMK----PDK--FLW-ASLLGGCRIHGNLDLAKRAAEALFEIEPEN 462 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 462 (476)
++.+++.|...+.++.|..++.+...+ ++. ..| ..++..+...+++.+|.+.+..++..-|.+
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 344455555555555555555554211 111 111 223333444556666666666665555543
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.87 E-value=83 Score=28.94 Aligned_cols=26 Identities=8% Similarity=0.275 Sum_probs=12.4
Q ss_pred hHHHHHHHhhhcCChhhHHHHHccCC
Q 038936 297 AASALVHMYSKCGNVENSKKVFNGMP 322 (476)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (476)
+++.+++.|...+.++.|..+..+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 34444444555555555555544443
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.83 E-value=49 Score=26.66 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=41.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcc-CCCC----CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 038936 130 ISGYVRYNQPIEALDLYRMMQNFE-NSVS----NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMY 204 (476)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (476)
++.+....++++|.+++++....- +.++ +.......+..-.....-..+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 345555566666666555554311 1111 112222233333333334444444444422 33344445556677
Q ss_pred HcCCCHHHHHHHHHhh
Q 038936 205 GKCGSINEARQIFDKM 220 (476)
Q Consensus 205 ~~~~~~~~a~~~~~~~ 220 (476)
.+.|+.++|..+|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777777544
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.48 E-value=55 Score=26.75 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=7.9
Q ss_pred hhcCCHHHHHHHHHhc
Q 038936 6 CNQRRLKEALQILHQI 21 (476)
Q Consensus 6 ~~~~~~~~A~~~~~~~ 21 (476)
++.|+.+-...+++.-
T Consensus 13 ~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 13 VQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHTTCHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcC
Confidence 4455555555555443
No 285
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=61.91 E-value=40 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHcCCCCcHH--HH-----HHHHHHHhccCchhhHHHHHHHHH
Q 038936 342 PDKALEYFELLLKSGTQPDHI--VF-----VGVLTACTHAGLVDKGLQYFHSIK 388 (476)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~--~~-----~~l~~~~~~~~~~~~a~~~~~~~~ 388 (476)
.+.|+.+|+.+.+...-++.. .. ...+..|.+.|.+++|.+++++..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 456666666665543222211 11 122234555666666666665555
No 286
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=61.78 E-value=49 Score=24.98 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=58.2
Q ss_pred hcCCHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 038936 7 NQRRLKEALQILHQISHPSPSIYSSLIQF-CRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFD 85 (476)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (476)
+=.+++.++-+-.-+. |+...|..++.. +--.|.+..++-.+... + ..+..-|.. -+|-+..++..|+..++
T Consensus 14 kY~dYdt~~fLsa~L~-~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N-T~Ts~YYk~--LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 14 RYRDYETAIFLAACLL-PCKPEYRMLMSIVLYLNGEYTRALFHLHKL---N-TCTSKYYES--LCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp HTTCHHHHHHHHHHHC-----CTHHHHHHHHHHTTCHHHHHHHHHTC---C-BHHHHHHHH--HHHHHTTCHHHHHHHHH
T ss_pred hcccccHHHHHHHHHc-cCChHHHhhhhhhhhhcchHhHHHHHHHhc---c-hHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3345555544333332 333356665543 34567777776655321 1 011112222 24556778888888777
Q ss_pred Hccc------c--------------c-chHHHHHHHHHHhcCCHHHHHHHHhc
Q 038936 86 EMQE------R--------------D-VCSYNTMISGFTKGGSLEQARNLFDE 117 (476)
Q Consensus 86 ~~~~------~--------------~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 117 (476)
.+.+ | | ...++.+...+...|+.++|...+..
T Consensus 87 ~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 87 SILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 7652 1 1 13577888888899999999998765
No 287
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.16 E-value=68 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=11.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 038936 333 IAGYAQNGMPDKALEYFELLLKS 355 (476)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~ 355 (476)
+.++.+.|+ ..+...+.++...
T Consensus 242 ~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 242 IEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHHHCC-GGGHHHHHHHHTT
T ss_pred HHHHHhcCc-hhhhHHHHHHHhc
Confidence 444555555 3455555555543
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.06 E-value=40 Score=24.61 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=7.1
Q ss_pred hcCChHHHHHHHHHcc
Q 038936 73 KCGNISDAQTLFDEMQ 88 (476)
Q Consensus 73 ~~g~~~~A~~~~~~~~ 88 (476)
..+..-.|.++++.+.
T Consensus 33 ~~~~~~sa~ei~~~l~ 48 (145)
T 2fe3_A 33 NSMAHPTADDIYKALE 48 (145)
T ss_dssp HCSSCCCHHHHHHHHG
T ss_pred hCCCCCCHHHHHHHHH
Confidence 3333444444544443
No 289
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=60.22 E-value=58 Score=25.29 Aligned_cols=65 Identities=8% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----HHHHHHHHHHHHHhCCCCc
Q 038936 229 TAMIGRYF---QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA-----EELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 229 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 294 (476)
..+++++. +..+.+.|+-++.+|++.| .|....-..++.+....|. ...|...++.....|.+-.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 34455554 4578999999999999999 6666555666666555443 3445555666666665443
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.52 E-value=53 Score=24.27 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038936 96 NTMISGFTKGGSLEQARNLFDEMPQR 121 (476)
Q Consensus 96 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 121 (476)
..++.-|...|+.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 34555555556666666666665543
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.68 E-value=99 Score=26.84 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcccch---hhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHhhHHH
Q 038936 197 WSALSDMYGKCGSINEARQIFDKMVDRDV---VSWTAMIGRYFQEGR--REEGFALFSELIKSGIRPNAFTFAG 265 (476)
Q Consensus 197 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 265 (476)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 46678888888999999999999976642 223333444444333 3457778888887776554444333
No 292
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=55.81 E-value=72 Score=25.00 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=43.7
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----HHHHHHHHHHHHHhCCCCc
Q 038936 228 WTAMIGRYF---QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA-----EELGKQVHGYMTRIGYDPY 294 (476)
Q Consensus 228 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 294 (476)
+..+++++. +..+.+.|+-++.+|++.|-.|....-..++.+....|. ...|...++.....|.|-.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 344555554 457899999999999999977766666666666555443 3455555666666664433
No 293
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=55.78 E-value=70 Score=24.80 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=38.0
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----HHHHHHHHHHHHHhC
Q 038936 230 AMIGRYF---QEGRREEGFALFSELIKSGIRPNAFTFAGVLNACADHAA-----EELGKQVHGYMTRIG 290 (476)
Q Consensus 230 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 290 (476)
.+|+++. +..+.+.|+-++.+|++.|-.|....-..++.+....|. ...|...++.....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 3455554 457899999999999999876765555555555554442 233444444444444
No 294
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=55.08 E-value=26 Score=23.49 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=18.2
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChh
Q 038936 107 SLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPI 140 (476)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (476)
..+.|.++++.+..+++..|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4455555555555555555555555554444433
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.57 E-value=62 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHH
Q 038936 95 YNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAM 129 (476)
Q Consensus 95 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 129 (476)
|..-...+...|++.+|.++|+.-.+........|
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 44444445555555555555554444433333333
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.15 E-value=1.2e+02 Score=26.76 Aligned_cols=126 Identities=10% Similarity=0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhccc--------chhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHhhH--
Q 038936 195 VVWSALSDMYGKCGSINEARQIFDKMVDR--------DVVSWTAMIGRYFQEG-RREEGFALFSELIKSGIRPNAFTF-- 263 (476)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 263 (476)
.....|+..|.+.|+.++...++.....- ....-..++..+.... ..+.-.++..+..+.. .....+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34566778888888888888887776431 1222344455444432 2222233333322211 0111122
Q ss_pred ----HHHHHHHhccccHHHHHHHHHHHHHhCCCCc-----hhhHHHHHHHhhhcCChhhHHHHHccC
Q 038936 264 ----AGVLNACADHAAEELGKQVHGYMTRIGYDPY-----SFAASALVHMYSKCGNVENSKKVFNGM 321 (476)
Q Consensus 264 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (476)
.-+...+...|++.+|..++..+.+.=-..| ..++..-+++|...+++.++...+...
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1344455566666666665555544311111 122333445555566666655555443
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.62 E-value=1.4e+02 Score=30.14 Aligned_cols=127 Identities=10% Similarity=-0.002 Sum_probs=75.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhh
Q 038936 98 MISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRL 177 (476)
Q Consensus 98 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 177 (476)
++..+...|..+-|.++...+.. ++..-..+..+|...|++++|...|++.. .++.++....... +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGG----------HH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccch----------hh
Confidence 55666777888877776665554 55555567788999999999999998875 3333222111000 00
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc----cch----hhHHHHHHHHHhcC
Q 038936 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD----RDV----VSWTAMIGRYFQEG 239 (476)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~ 239 (476)
...++... ........-|..++..+-+.+-++.+.++-+...+ .|. ..|+.+.++.+..|
T Consensus 883 ~~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111100 00122334678888889999998888877766532 222 35667777666544
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.24 E-value=61 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038936 96 NTMISGFTKGGSLEQARNLFDEMPQR 121 (476)
Q Consensus 96 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 121 (476)
..++.-|...|+.++|.+.++++..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 34555566666666666666666544
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.21 E-value=74 Score=24.06 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=27.8
Q ss_pred CCCcHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 425 MKPDKFLW--ASLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 425 ~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
.-|...+| ......+...|-.++....|....+.+|.
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 34555544 33445577889999999999999999995
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.86 E-value=75 Score=23.73 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHhcCChhhHHHHHhhC-C--CCC--cHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 038936 407 LARSGRFHEAEDVISKM-P--MKP--DKFLWASLLG-G-----CRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 407 ~~~~g~~~~A~~~~~~~-~--~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 457 (476)
+...|++-+|.++++.. . ..| +...|..++. . ..+.|+...|..++++++.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44559999999999885 2 234 4556777776 2 2356999999999999987
No 301
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=50.72 E-value=26 Score=32.11 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhC-CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 400 YACIVDLLARSGRFHEAEDVISKM-PMKP-DKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 400 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
...|++...-.+.++.|...+.++ ...| +...|+.++-.....|+.-+|.-.|-+.+.-..+.+.+..+|..++.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 444555555566677787777775 3334 45577777766666777777777777777766667777777776653
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.33 E-value=72 Score=23.40 Aligned_cols=26 Identities=0% Similarity=0.114 Sum_probs=11.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 31 SLIQFCRQNRALEEGKKVHSHLKSSG 56 (476)
Q Consensus 31 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 56 (476)
.++..+...+..-.|.++++.+.+.+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 33344433334444444444444443
No 303
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.67 E-value=91 Score=24.33 Aligned_cols=55 Identities=9% Similarity=-0.046 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch
Q 038936 139 PIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193 (476)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 193 (476)
..++.++|..|....-..--...|......+...|++.+|.++++.-++.+-.|-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455666666655333333344445555555555555555555555555554443
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.30 E-value=65 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 126 WTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4567888888999999999999886
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.92 E-value=60 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 52 LKSSGFKPGVFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+.+.|+.++.. -..++..+...+..-.|.++++.+.
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIK 59 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34456554433 2344455555555566666666654
No 306
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.75 E-value=1.1e+02 Score=24.90 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=9.4
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 038936 238 EGRREEGFALFSELIKSGIRP 258 (476)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~ 258 (476)
.+.......+++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 344333444444455554433
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.46 E-value=1.2e+02 Score=25.04 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=99.8
Q ss_pred hhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038936 6 CNQRRLKEALQILHQIS--HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNISDAQTL 83 (476)
Q Consensus 6 ~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (476)
.+..+..+..+++..-. ..|..-++. +...+..|+.+-+..+ .+.|..++...-...+...+..|+.+-+..+
T Consensus 7 i~~~~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGGCCHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred HHhcCHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 45667777777776553 333333333 3334556776654444 4445444332223345555677888777777
Q ss_pred HHHccccc---chHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC
Q 038936 84 FDEMQERD---VCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEALDLYRMMQNFENSVS 157 (476)
Q Consensus 84 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 157 (476)
++.-..++ ..-+ +-+...+..|+.+-+.-+++.-... +...+...+...+..|+.+-+.-+ .+......
T Consensus 82 l~~ga~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~ 156 (285)
T 3kea_A 82 LFSGLDDSQFDDKGN-TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTF 156 (285)
T ss_dssp HHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTC
T ss_pred HHCCCCCCCcCCCCC-cHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccc
Confidence 76533322 2122 2334455678888777777763322 333323444455566765444333 33122222
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (476)
+...-.+.+...+..|..+.+.-+++.-...... +..-.+..+...+..|+.+-+.-+++.
T Consensus 157 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 157 DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred cccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 3223445556666777777666666553332211 101111122333445666555544444
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.85 E-value=1.3e+02 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC
Q 038936 98 MISGFTKGGSLEQARNLFDEMPQ 120 (476)
Q Consensus 98 l~~~~~~~g~~~~a~~~~~~~~~ 120 (476)
++.-|...|+.++|.+.++++..
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC
Confidence 34444444555555555554443
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.65 E-value=2e+02 Score=29.17 Aligned_cols=128 Identities=11% Similarity=0.000 Sum_probs=65.6
Q ss_pred HHHHhhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhH
Q 038936 301 LVHMYSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKG 380 (476)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 380 (476)
++..+...|.++-|.++..-+.. ++..--.+..+|...|++++|...|+++- .|+..+..... .....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------GGHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------chhhh
Confidence 55566667777777666555544 44433456677888888888888887753 22221110000 00000
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC----C-CCCc--HHHHHHHHHHHHhcC
Q 038936 381 LQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM----P-MKPD--KFLWASLLGGCRIHG 443 (476)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~--~~~~~~l~~~~~~~g 443 (476)
..++.... .......-|..++..+.+.+-++-++++-+.+ . ..|+ ...|..+..+.+..|
T Consensus 884 ~~ll~~~e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01110000 01112234667777777888777777665543 1 1121 225666666655444
No 310
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=45.39 E-value=55 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHcccccchHHHHHHHHHHhcCC
Q 038936 75 GNISDAQTLFDEMQERDVCSYNTMISGFTKGGS 107 (476)
Q Consensus 75 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 107 (476)
...++|..+++.+...+...|..++.++...|.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 344455555555544444455555555444443
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.47 E-value=91 Score=22.85 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|.+.-+..+...|-+
T Consensus 16 ~~l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 4466778777665433 445555566778899999998876 4556676777777788877754
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.43 E-value=89 Score=22.72 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|.+.-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 3466777777665433 444455556677888888888765 4455666666666777777754
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.56 E-value=94 Score=22.77 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=42.2
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+. +...+..|.+.-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 3466778777765443 445555555 677888998888875 44556666666677787777543
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.23 E-value=89 Score=22.38 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=39.3
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 038936 351 LLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFH 414 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 414 (476)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+. +...+..|.+.-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 456677777665443 444555555 677888888888765 44556666666667777777543
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.98 E-value=1.3e+02 Score=23.92 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHccc
Q 038936 43 EEGKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 43 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
+.+..+|..|...|+-.. ...|......+...|++.+|..+|+.-.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555544322 23444555555555666666665555444
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.57 E-value=53 Score=26.59 Aligned_cols=86 Identities=10% Similarity=-0.014 Sum_probs=47.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhh-------HHHHHHHHH--hcCChHHHHHHHHHccccc------------
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGVFI-------SNCLLDMYA--KCGNISDAQTLFDEMQERD------------ 91 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~~~~~~------------ 91 (476)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445677888888888887777766555332 233333321 5577776666666532211
Q ss_pred --chHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038936 92 --VCSYNTMISGFTKGGSLEQARNLFDEMP 119 (476)
Q Consensus 92 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 119 (476)
..-+ +.+...+..|+.+-+.-+++.-.
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHhCCC
Confidence 1111 22333455677776666666543
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.47 E-value=1.1e+02 Score=22.94 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=27.4
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCchH
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSDE 194 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 194 (476)
+.++|..|....-..--...|......+...|++..|.+++..-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44556666553333333444555555555555555555555555555555543
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.34 E-value=1.1e+02 Score=22.83 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHcc
Q 038936 45 GKKVHSHLKSSGFKPG-VFISNCLLDMYAKCGNISDAQTLFDEMQ 88 (476)
Q Consensus 45 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 88 (476)
+..+|..|...|+-.. ...|......+...|++.+|.++|+.-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444443222 2233344444444444444444444433
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.88 E-value=84 Score=22.88 Aligned_cols=45 Identities=4% Similarity=0.067 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 30 SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 30 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444444 4555555555555544444443333334444443
No 320
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.79 E-value=90 Score=22.72 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=37.1
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
+.+.+.|++++..-.. ++..+...+ .-.|.++++.+.+. +...+..|.+.-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcE
Confidence 3455667776664332 334444445 66788888888765 4455666666666777777743
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.84 E-value=1.9e+02 Score=24.85 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcccc
Q 038936 65 NCLLDMYAKCGNISDAQTLFDEMQER 90 (476)
Q Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 90 (476)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34566666777777777777777655
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.14 E-value=53 Score=21.94 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChhHHH
Q 038936 208 GSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRREEGF 245 (476)
Q Consensus 208 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 245 (476)
...++|.++++.+..+++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
No 323
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.51 E-value=53 Score=26.48 Aligned_cols=86 Identities=12% Similarity=-0.047 Sum_probs=47.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhc---CChHHHHHHHHHcccccc----------
Q 038936 33 IQFCRQNRALEEGKKVHSHLKSSGFKPGV-------FISNCLLDMYAKC---GNISDAQTLFDEMQERDV---------- 92 (476)
Q Consensus 33 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~---------- 92 (476)
+...++.|+.+....+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.-..++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44456778888777777777777655443 222333 333444 777666666655332210
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038936 93 ---CSYNTMISGFTKGGSLEQARNLFDEMP 119 (476)
Q Consensus 93 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 119 (476)
..-.+.+...+..|+.+-+.-+++.-.
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 011223344456677777666666543
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.16 E-value=35 Score=26.79 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCChhhHHHHHhhC-CCCCcHHHHHHHH
Q 038936 377 VDKGLQYFHSIKEKHGLTYTA-DHYA-----CIVDLLARSGRFHEAEDVISKM-PMKPDKFLWASLL 436 (476)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 436 (476)
.+.|+.+|+.+.+...++.+. +... ..+-.|.+.|.+++|.+++++. +..|+..-....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL 154 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDL 154 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 467888888887764332221 1111 2344678888899999888884 5444444344333
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.08 E-value=97 Score=22.70 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=18.2
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038936 32 LIQFCRQNR-ALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCG 75 (476)
Q Consensus 32 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 75 (476)
++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333 34445555555544443333333333333333333
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.75 E-value=2.7e+02 Score=25.21 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=41.8
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038936 187 RTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVD---RDVVSWTAMIGRYFQEGRREEGFALFSELIKSG 255 (476)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 255 (476)
+.|++--...|..-.+.+...|++++|-++--..+. +++.+.+.+-..-...|+..-.+.+|..+.+.|
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 346666666677777788888999988888766544 333444333332233455555666666666655
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.85 E-value=95 Score=22.04 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=25.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 038936 332 LIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGL 376 (476)
Q Consensus 332 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 376 (476)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444455556666666666666555555555555555555553
No 328
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=31.76 E-value=1.2e+02 Score=29.01 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=42.9
Q ss_pred hhHHHHHhhCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHhhh
Q 038936 414 HEAEDVISKMPMKPDKFLWASLLGGCRIHGNLDLAKRAAEALFEIEPENPATYVTMANIYA 474 (476)
Q Consensus 414 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 474 (476)
+.|.++++-|+ ........+......|++..|.++.+.++..+|+|..+...++.+|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~ 494 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALE 494 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34455555554 22233344555677899999999999999999999999999888874
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.10 E-value=1e+02 Score=21.90 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 30 SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 30 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556666666677788888888777655555555555566666554
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.30 E-value=68 Score=19.09 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHH-Hhc
Q 038936 42 LEEGKKVHSHLKSSGFKPGVFISNCLLDMY-AKC 74 (476)
Q Consensus 42 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 74 (476)
.++|...|.+|++..-.++..+|...+... ++-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367778887776654444667888888777 443
No 331
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.77 E-value=1.7e+02 Score=21.60 Aligned_cols=52 Identities=6% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCch
Q 038936 142 ALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGYIMRTGFDSD 193 (476)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 193 (476)
+.++|..|....-..--...|......+...|++.+|.++++.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5555655555333333344445555555555555555555555555555553
No 332
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.76 E-value=14 Score=25.87 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=49.3
Q ss_pred hhhcCChhhHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHH
Q 038936 305 YSKCGNVENSKKVFNGMPRPDLVSWTSLIAGYAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQY 383 (476)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 383 (476)
|.++++|++++.+.++ -..|.-.|......++.+-|.++++-..+.| +...|..++..|...=+++-++++
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 5556666666444222 2334455666777888888999998888866 677888888888887777777664
No 333
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=29.73 E-value=1.4e+02 Score=20.79 Aligned_cols=64 Identities=5% Similarity=-0.046 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc
Q 038936 60 GVFISNCLLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDN 123 (476)
Q Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 123 (476)
+...-...+.++.+.|+.+....+.+.+..++..+....+.++.+.|+.+....+.+.+..+|.
T Consensus 55 ~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~ 118 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTG 118 (131)
T ss_dssp CHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCT
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCH
Confidence 4444444445555555433323333333345555555555555555554333333333333343
No 334
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.34 E-value=99 Score=18.82 Aligned_cols=50 Identities=14% Similarity=-0.023 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038936 27 SIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGNI 77 (476)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 77 (476)
..++.++....+..-.+++...+.++.+.|. .+...|..-.+.+++..-+
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQF~ 52 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQFL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 3466777788888888999999999999884 4777777766666654433
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.18 E-value=1.6e+02 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=14.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 038936 130 ISGYVRYNQPIEALDLYRMMQN 151 (476)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~~~~ 151 (476)
+..|.+.|.+++|.++|+....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 4566777777777777777543
No 336
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.85 E-value=1.3e+02 Score=23.60 Aligned_cols=192 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcCCCchHHHHH--HHHHHHHcCCCHHHHHHHHHhhcccchhhHH--HHHHHHHhcC
Q 038936 164 SVLSAVSAIQCLRLGKEIHGYIMRTGFDSDEVVWS--ALSDMYGKCGSINEARQIFDKMVDRDVVSWT--AMIGRYFQEG 239 (476)
Q Consensus 164 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~ 239 (476)
+.+...+..|+.+.+..+++.+.+.|..++..... ..+...+..|+.+-...+++.-..++..... +.+...+..|
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccccHHHHHHHHHHHHHhCCCCchhhHHHHHHHhhhcCChhhHHHH
Q 038936 240 RREEGFALFSELIKSGIRPNAFTFA--GVLNACADHAAEELGKQVHGYMTRIGYDPYSFAASALVHMYSKCGNVENSKKV 317 (476)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (476)
+.+-+..+++.....++.++..... ..+...+..|+.+.+..+++.-.... ..+...-...+...+..|+.+-+..+
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 169 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHAVENNSLSMVQLL 169 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccccCCCcHHHHHHHcCCHHHHHHH
Q ss_pred HccCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 038936 318 FNGMPRPDLVSWT--SLIAGYAQNGMPDKALEYFELLLKSGTQPD 360 (476)
Q Consensus 318 ~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 360 (476)
++.-..++..... ..+...+..|+.+ +.+.+.+.|..++
T Consensus 170 l~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 170 LQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.80 E-value=1.6e+02 Score=21.00 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=7.4
Q ss_pred ChhHHHHHHHHHHHcC
Q 038936 41 ALEEGKKVHSHLKSSG 56 (476)
Q Consensus 41 ~~~~a~~~~~~~~~~~ 56 (476)
..-.|.++++.+.+.+
T Consensus 33 ~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAG 48 (136)
T ss_dssp CSBCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3444444444444443
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.32 E-value=85 Score=22.64 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=16.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 038936 338 QNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAG 375 (476)
Q Consensus 338 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 375 (476)
..++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 25 ~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp TCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33334445555555554444444444444444444443
No 339
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=28.10 E-value=1.1e+02 Score=19.10 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038936 434 SLLGGCRIHGNLDLAKRAAEALFEIEPE 461 (476)
Q Consensus 434 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 461 (476)
.++..+...|++++|...+-+++..-|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3445556666677777777777766664
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.92 E-value=98 Score=22.29 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038936 30 SSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFISNCLLDMYAKCGN 76 (476)
Q Consensus 30 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 76 (476)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555555666777777777766555555554445555555553
No 341
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=27.26 E-value=1.9e+02 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=10.9
Q ss_pred HHHHhcCChHHHHHHHHHcccc
Q 038936 69 DMYAKCGNISDAQTLFDEMQER 90 (476)
Q Consensus 69 ~~~~~~g~~~~A~~~~~~~~~~ 90 (476)
..+.-.|++++|+.+-..+..+
T Consensus 81 WIyiGRg~~~eAlDiA~~L~D~ 102 (161)
T 2ynq_A 81 WIYIGRSQSEEALELARTIEDR 102 (161)
T ss_dssp HHHHHHTCHHHHHHHHHHHTCH
T ss_pred HHHHcCCchHHHHHHHHhcCcH
Confidence 3344455555555555554443
No 342
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.87 E-value=1.9e+02 Score=26.48 Aligned_cols=77 Identities=9% Similarity=0.016 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhhHHHHHhhC--CCCCcHHHHHHHHHHHH
Q 038936 363 VFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHEAEDVISKM--PMKPDKFLWASLLGGCR 440 (476)
Q Consensus 363 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 440 (476)
++..|++.......++.|..+|.++... .|.+...|+.|+......|+.-+|.-.+-+. ...|-..+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 4445555555566788999999999975 4667778999999999999988888877763 45677777877776655
Q ss_pred h
Q 038936 441 I 441 (476)
Q Consensus 441 ~ 441 (476)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 343
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.81 E-value=2.4e+02 Score=22.42 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCC
Q 038936 343 DKALEYFELLLKSGTQPDH-IVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 343 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
+....+|..|..+|+-... ..|......+...|++.+|.++|+.-++. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 5677888888888765544 35666677777888888888888888876 55553
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.50 E-value=1.4e+02 Score=18.80 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=39.5
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccC-chhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 038936 350 ELLLKSGTQPDHIVFVGVLTACTHAG-LVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRF 413 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 413 (476)
+.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+. +...+..+....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCe
Confidence 345667777766543 3455555554 566778888877765 4455666666777777777754
No 345
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.34 E-value=1.6e+02 Score=19.22 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhhcccchhhHHHHHHHHHhcCChh
Q 038936 178 GKEIHGYIMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDKMVDRDVVSWTAMIGRYFQEGRRE 242 (476)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 242 (476)
...+++.+.+.|+-.... +..+- ......++|..+++.+...+...|..+..++...+...
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 445566666666433222 12111 13567788888888888888888888888877766533
No 346
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.19 E-value=3.1e+02 Score=22.42 Aligned_cols=80 Identities=10% Similarity=-0.090 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChhHHH
Q 038936 67 LLDMYAKCGNISDAQTLFDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQR---DNFSWTAMISGYVRYNQPIEAL 143 (476)
Q Consensus 67 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 143 (476)
.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+.-+++.-... |...++.+ ...+..|+.+-+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~ 112 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVK 112 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHH
Confidence 3445567788887777777644333222233455566778888777777754332 22222333 3334556655444
Q ss_pred HHHH
Q 038936 144 DLYR 147 (476)
Q Consensus 144 ~~~~ 147 (476)
-+++
T Consensus 113 ~Ll~ 116 (285)
T 3kea_A 113 LFVK 116 (285)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 347
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.12 E-value=65 Score=19.13 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=13.4
Q ss_pred cCchhhHHHHHHHHHHhcCCCCC
Q 038936 374 AGLVDKGLQYFHSIKEKHGLTYT 396 (476)
Q Consensus 374 ~~~~~~a~~~~~~~~~~~~~~~~ 396 (476)
.-+++.|...|.++.....+||+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 34666666666666654445554
No 348
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=22.90 E-value=2e+02 Score=20.04 Aligned_cols=66 Identities=5% Similarity=-0.014 Sum_probs=34.5
Q ss_pred HHHcccccchHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038936 84 FDEMQERDVCSYNTMISGFTKGGSLEQARNLFDEMPQRDNFSWTAMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
.+.+..++...-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.|+. ++...+..+.
T Consensus 48 ~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~-~a~~~L~~~l 113 (131)
T 1te4_A 48 LESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE-RVRAAMEKLA 113 (131)
T ss_dssp HHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH-HHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHHHHHHHH
Confidence 33334455555566666666666544444444444445555656666666666653 3344443333
No 349
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.66 E-value=88 Score=19.92 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 038936 433 ASLLGGCRIHGNLDLAKRAAEALFE 457 (476)
Q Consensus 433 ~~l~~~~~~~g~~~~A~~~~~~~~~ 457 (476)
..+++-|+..|+++.|..+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4556667777888888888887765
No 350
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.56 E-value=2.5e+02 Score=21.10 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=9.7
Q ss_pred hhhcCCHHHHHHHHHhc
Q 038936 5 LCNQRRLKEALQILHQI 21 (476)
Q Consensus 5 ~~~~~~~~~A~~~~~~~ 21 (476)
.+..|+.+....++...
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666544
No 351
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=22.34 E-value=5.6e+02 Score=25.14 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 038936 158 NKFTLSSVLSAVSAIQCLRLGKEIHGYIMR 187 (476)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (476)
+...-..++.+++...+.....++++....
T Consensus 648 ~~~~~~~~l~al~~~~~~~~~~~~l~~~~~ 677 (780)
T 1z5h_A 648 RDEDRVRIISAFGKLKSNTDLSTVYGMVEK 677 (780)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHhc
Confidence 344445666666666676667777777665
No 352
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.15 E-value=4.5e+02 Score=23.88 Aligned_cols=111 Identities=8% Similarity=-0.048 Sum_probs=53.3
Q ss_pred CCHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhhhhhhHHHHHHH
Q 038936 106 GSLEQARNLFDEMPQRDN-FSWTAMISGYVRYNQPIEALDLYRMMQNFENSVSNKFTLSSVLSAVSAIQCLRLGKEIHGY 184 (476)
Q Consensus 106 g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 184 (476)
.+.+-|.++-.+..=|.. ..|..-...+...|++++|.++--... .|+--+..|.+.+-..-...|...-...+|..
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP--~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~ 420 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI 420 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc--cccccCHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 344444444444433321 123333455566677776666655444 34444555554444444444555555555555
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 038936 185 IMRTGFDSDEVVWSALSDMYGKCGSINEARQIFDK 219 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 219 (476)
+.+.| ..+..--..+++.-...|+.+-.++++.+
T Consensus 421 Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 421 LLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 55555 23332233344444555555555554443
No 353
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.10 E-value=2.8e+02 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=9.4
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 038936 68 LDMYAKCGNISDAQTLFDE 86 (476)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~ 86 (476)
+...+..|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344455555555544444
No 354
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=21.98 E-value=2.5e+02 Score=20.88 Aligned_cols=83 Identities=7% Similarity=0.066 Sum_probs=47.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhh
Q 038936 336 YAQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLVDKGLQYFHSIKEKHGLTYTADHYACIVDLLARSGRFHE 415 (476)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 415 (476)
..-..++..++..++..--..+ |.. .-..|+.+|.....+..-.+ +.+.. .+.+...--..+-++|.-.|++++
T Consensus 18 afl~~dYs~VI~~L~~~~~~~L-p~~-~kY~LA~SYI~~e~Ls~eQK--enIln--~itlkSde~yL~YWIyiGRg~~~e 91 (161)
T 2ynq_A 18 LFLQNKYSDVITTLEDYAPEDM-PYV-IQYELASSYVMTESLTEEQR--QTVSN--NITLKTDEQYMLYWIYIGRSQSEE 91 (161)
T ss_dssp HHTTTCHHHHHHHHTTSCGGGS-CHH-HHHHHHHHHHHTSSSCHHHH--HHHHH--TCCTTSCHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhHHHHHHHHhcCChhhC-Chh-HHHHHHHHHHHccCCCHHHH--HHHHh--hCCccCCHHHHHHHHHHcCCchHH
Confidence 3345677777777665543322 233 33346667766655543221 22222 444444444456677888888888
Q ss_pred HHHHHhhCC
Q 038936 416 AEDVISKMP 424 (476)
Q Consensus 416 A~~~~~~~~ 424 (476)
|+.+-..+.
T Consensus 92 AlDiA~~L~ 100 (161)
T 2ynq_A 92 ALELARTIE 100 (161)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 888888876
No 355
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.94 E-value=2.8e+02 Score=21.47 Aligned_cols=110 Identities=11% Similarity=0.029 Sum_probs=57.9
Q ss_pred hhhhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCh
Q 038936 4 ILCNQRRLKEALQILHQIS---HPSPSIYSSLIQFCRQNRALEEGKKVHSHLKSSGFKPGVFI---SNCLLDMYAKCGNI 77 (476)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 77 (476)
..++.|+++-...+++.-. .++..- .+.+...++.|+.+-+ +.+.+.|..++... -...+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKEN-VTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTS-CCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCC-CCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 4567788888877777653 222222 2344455666776544 44445554333211 12344555677777
Q ss_pred HHHHHHHHHccccc---chHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038936 78 SDAQTLFDEMQERD---VCSYNTMISGFTKGGSLEQARNLFDEMP 119 (476)
Q Consensus 78 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 119 (476)
+-+..+++.-..++ .... ..+...+..|+.+-+.-+++.-.
T Consensus 90 ~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 90 SMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQ 133 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCC
Confidence 76666665432222 1111 23444556677777766666533
No 356
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.67 E-value=1.9e+02 Score=21.58 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=12.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 038936 128 AMISGYVRYNQPIEALDLYRMMQ 150 (476)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~~~ 150 (476)
.++.-|...|+.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34455555555555555555544
No 357
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.20 E-value=3.8e+02 Score=22.76 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=7.9
Q ss_pred HcCCCHHHHHHHHHh
Q 038936 205 GKCGSINEARQIFDK 219 (476)
Q Consensus 205 ~~~~~~~~a~~~~~~ 219 (476)
+..|+.+-+..+++.
T Consensus 181 ~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRNREALDLMMDT 195 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 345565555555544
No 358
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.17 E-value=3.8e+02 Score=22.71 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 038936 246 ALFSELIKSGIRPNAFTFAGVLNACADHAAEELGKQVHGYMTRIGYD 292 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 292 (476)
+++..+.+.|+.|...++..++..+.+.=.++.+..+++.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 35556677788888888888888888877788888888888877643
No 359
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.80 E-value=2.6e+02 Score=20.71 Aligned_cols=42 Identities=0% Similarity=-0.122 Sum_probs=19.2
Q ss_pred HHhccccHHHHHHHHHHHHHh--CCCCchhhHHHHHHHhhhcCC
Q 038936 269 ACADHAAEELGKQVHGYMTRI--GYDPYSFAASALVHMYSKCGN 310 (476)
Q Consensus 269 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 310 (476)
.+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 41 ~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 41 TLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 333334444555555555544 433444444444444444443
No 360
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.45 E-value=3.2e+02 Score=21.50 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=40.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch-----hhHHHHHHHHHHhcCCCCCh
Q 038936 337 AQNGMPDKALEYFELLLKSGTQPDHIVFVGVLTACTHAGLV-----DKGLQYFHSIKEKHGLTYTA 397 (476)
Q Consensus 337 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~ 397 (476)
.+..+++.|+-++-+|++.|-.|....-..++.+...-|.- ..|...++....- |.|--.
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE~~ 110 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFPEGL 110 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTTTTH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCHHH
Confidence 45679999999999999999878777766666666655542 3444555444433 655433
No 361
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.42 E-value=3e+02 Score=25.67 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHccc
Q 038936 63 ISNCLLDMYAKCGNISDAQTLFDEMQE 89 (476)
Q Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 89 (476)
-...++..|.+.|-.+.|.++++.+..
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~ 544 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGN 544 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344455555555555555555555443
Done!