Query 038938
Match_columns 194
No_of_seqs 169 out of 1181
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 3.8E-52 8.2E-57 332.1 21.4 188 2-194 34-261 (300)
2 PLN03013 cysteine synthase 100.0 2.4E-48 5.2E-53 325.8 20.7 190 2-194 146-373 (429)
3 PLN02565 cysteine synthase 100.0 1.4E-47 2.9E-52 314.4 21.5 190 2-194 38-265 (322)
4 TIGR01139 cysK cysteine syntha 100.0 1.1E-45 2.3E-50 301.1 22.0 189 2-194 29-256 (298)
5 PLN00011 cysteine synthase 100.0 1.2E-45 2.6E-50 303.5 22.2 189 2-194 40-267 (323)
6 PLN02556 cysteine synthase/L-3 100.0 7.7E-46 1.7E-50 308.4 20.9 190 2-194 82-309 (368)
7 PLN02356 phosphateglycerate ki 100.0 2E-45 4.3E-50 308.0 20.5 189 2-194 76-360 (423)
8 KOG1252 Cystathionine beta-syn 100.0 2E-46 4.3E-51 298.7 13.7 189 3-194 76-307 (362)
9 TIGR01136 cysKM cysteine synth 100.0 4.8E-45 1E-49 297.4 22.1 189 2-194 30-256 (299)
10 PRK11761 cysM cysteine synthas 100.0 1E-44 2.2E-49 294.6 20.9 182 2-194 35-253 (296)
11 TIGR01138 cysM cysteine syntha 100.0 4.1E-44 8.8E-49 290.5 20.8 182 2-194 31-249 (290)
12 PRK10717 cysteine synthase A; 100.0 2.4E-43 5.2E-48 290.9 21.7 189 2-194 36-275 (330)
13 COG1171 IlvA Threonine dehydra 100.0 3.1E-44 6.8E-49 291.4 16.0 187 2-194 48-281 (347)
14 cd01561 CBS_like CBS_like: Thi 100.0 3.8E-43 8.2E-48 285.2 21.7 189 2-194 25-253 (291)
15 TIGR01137 cysta_beta cystathio 100.0 2E-42 4.3E-47 296.5 22.1 189 2-194 34-268 (454)
16 cd06448 L-Ser-dehyd Serine deh 100.0 1.7E-42 3.7E-47 283.9 18.4 188 2-194 24-262 (316)
17 PLN02970 serine racemase 100.0 3.3E-42 7.1E-47 283.7 18.0 185 2-194 50-279 (328)
18 PRK12483 threonine dehydratase 100.0 5.2E-42 1.1E-46 295.1 18.8 186 2-194 60-291 (521)
19 PRK08526 threonine dehydratase 100.0 2.9E-42 6.2E-47 290.2 16.2 185 2-194 43-273 (403)
20 PRK08639 threonine dehydratase 100.0 4.6E-42 9.9E-47 291.1 17.1 186 2-194 48-284 (420)
21 TIGR01127 ilvA_1Cterm threonin 100.0 4.4E-42 9.5E-47 288.3 16.7 185 2-194 23-253 (380)
22 TIGR02079 THD1 threonine dehyd 100.0 4.7E-42 1E-46 289.8 16.9 186 2-194 39-273 (409)
23 PLN02550 threonine dehydratase 100.0 1.2E-41 2.6E-46 294.7 19.4 186 2-194 132-363 (591)
24 PRK06382 threonine dehydratase 100.0 5.4E-42 1.2E-46 289.6 16.7 185 2-194 48-278 (406)
25 cd06447 D-Ser-dehyd D-Serine d 100.0 3.3E-41 7.1E-46 282.5 19.4 192 2-194 83-356 (404)
26 PRK08813 threonine dehydratase 100.0 2E-41 4.4E-46 279.1 17.2 181 2-194 56-281 (349)
27 PRK08198 threonine dehydratase 100.0 2E-41 4.4E-46 286.3 17.3 185 2-194 45-275 (404)
28 PRK06608 threonine dehydratase 100.0 3.2E-41 7E-46 278.4 18.0 187 2-194 46-276 (338)
29 PRK07334 threonine dehydratase 100.0 1.4E-41 3E-46 287.0 14.9 185 2-194 46-274 (403)
30 PRK07476 eutB threonine dehydr 100.0 2.4E-41 5.1E-46 278.1 15.5 185 2-194 42-274 (322)
31 PRK08638 threonine dehydratase 100.0 6.3E-41 1.4E-45 276.2 17.2 184 2-194 50-280 (333)
32 PRK06110 hypothetical protein; 100.0 8.1E-41 1.8E-45 274.9 17.6 185 2-194 44-274 (322)
33 TIGR01124 ilvA_2Cterm threonin 100.0 6.4E-41 1.4E-45 288.2 17.6 186 2-194 40-271 (499)
34 TIGR02991 ectoine_eutB ectoine 100.0 4.4E-41 9.5E-46 275.7 15.7 185 2-194 42-274 (317)
35 PRK02991 D-serine dehydratase; 100.0 1.4E-40 3E-45 281.7 18.7 192 2-194 106-379 (441)
36 PRK07048 serine/threonine dehy 100.0 2.2E-40 4.7E-45 272.4 17.8 185 2-194 47-277 (321)
37 TIGR02035 D_Ser_am_lyase D-ser 100.0 5.7E-40 1.2E-44 277.0 20.5 191 2-194 101-374 (431)
38 PRK09224 threonine dehydratase 100.0 2.8E-40 6.1E-45 285.1 17.6 186 2-194 43-274 (504)
39 PRK06450 threonine synthase; V 100.0 5.3E-40 1.2E-44 270.9 18.0 182 2-194 73-306 (338)
40 PRK06815 hypothetical protein; 100.0 5.6E-40 1.2E-44 269.4 16.9 185 2-194 43-274 (317)
41 KOG1250 Threonine/serine dehyd 100.0 5.8E-40 1.3E-44 265.9 15.9 185 2-193 89-319 (457)
42 PRK08246 threonine dehydratase 100.0 8.8E-40 1.9E-44 267.4 17.1 180 2-194 45-270 (310)
43 PRK08329 threonine synthase; V 100.0 4.5E-39 9.8E-44 266.8 18.7 183 2-194 80-308 (347)
44 PRK08197 threonine synthase; V 100.0 4.4E-39 9.6E-44 271.0 18.5 185 2-194 103-345 (394)
45 cd01562 Thr-dehyd Threonine de 100.0 3.3E-39 7E-44 263.6 16.8 185 2-194 40-270 (304)
46 PRK06381 threonine synthase; V 100.0 7.8E-39 1.7E-43 263.0 18.4 185 2-194 39-285 (319)
47 PRK06352 threonine synthase; V 100.0 4.2E-39 9.1E-44 267.3 16.4 183 2-194 51-282 (351)
48 PRK07591 threonine synthase; V 100.0 3.4E-38 7.4E-43 267.3 18.6 185 2-194 113-355 (421)
49 KOG1251 Serine racemase [Signa 100.0 1.4E-38 3E-43 243.8 13.9 184 2-193 48-277 (323)
50 cd01563 Thr-synth_1 Threonine 100.0 6.8E-38 1.5E-42 258.0 18.8 184 2-194 46-286 (324)
51 PRK06721 threonine synthase; R 100.0 1E-37 2.2E-42 259.2 19.7 183 2-194 51-282 (352)
52 PRK07409 threonine synthase; V 100.0 1.5E-37 3.2E-42 258.5 18.6 183 2-194 54-286 (353)
53 KOG1481 Cysteine synthase [Ami 100.0 1.3E-37 2.7E-42 242.6 14.2 189 2-194 72-326 (391)
54 PLN02569 threonine synthase 100.0 4E-37 8.7E-42 263.3 17.9 186 2-194 158-403 (484)
55 PRK06260 threonine synthase; V 100.0 3.8E-37 8.2E-42 259.5 17.1 183 2-194 91-332 (397)
56 PRK08206 diaminopropionate amm 100.0 3E-37 6.5E-42 259.8 15.9 187 4-194 71-339 (399)
57 cd00640 Trp-synth-beta_II Tryp 100.0 1.7E-36 3.7E-41 240.4 18.8 154 2-194 23-212 (244)
58 PRK05638 threonine synthase; V 100.0 6.6E-36 1.4E-40 255.0 18.3 181 2-194 88-320 (442)
59 TIGR03844 cysteate_syn cysteat 100.0 5.7E-35 1.2E-39 245.3 18.0 184 3-194 94-344 (398)
60 TIGR01747 diampropi_NH3ly diam 100.0 3.2E-35 6.9E-40 245.4 15.6 187 2-192 46-314 (376)
61 TIGR00260 thrC threonine synth 100.0 8.9E-35 1.9E-39 239.8 17.8 184 2-194 47-288 (328)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.7E-34 3.8E-39 242.4 16.0 187 2-189 65-330 (396)
63 TIGR01415 trpB_rel pyridoxal-p 100.0 7.9E-34 1.7E-38 239.5 19.3 186 2-194 93-369 (419)
64 cd06449 ACCD Aminocyclopropane 100.0 1.6E-34 3.5E-39 236.3 14.3 185 2-194 25-272 (307)
65 TIGR01275 ACC_deam_rel pyridox 100.0 3.3E-34 7.2E-39 234.8 12.9 185 2-194 30-266 (311)
66 cd06446 Trp-synth_B Tryptophan 100.0 3.6E-33 7.9E-38 233.0 18.7 185 2-194 58-325 (365)
67 PRK13028 tryptophan synthase s 100.0 5E-33 1.1E-37 233.1 18.7 185 2-194 86-353 (402)
68 PRK12391 tryptophan synthase s 100.0 8.4E-33 1.8E-37 233.6 19.3 185 2-194 102-378 (427)
69 PRK04346 tryptophan synthase s 100.0 4.6E-33 1E-37 232.9 17.3 185 2-194 82-349 (397)
70 PF00291 PALP: Pyridoxal-phosp 100.0 1.1E-33 2.5E-38 230.6 13.1 181 2-194 32-271 (306)
71 PLN02618 tryptophan synthase, 100.0 1.2E-32 2.5E-37 231.0 18.2 185 2-194 95-362 (410)
72 TIGR00263 trpB tryptophan synt 100.0 7.6E-33 1.6E-37 232.2 17.1 185 2-194 74-341 (385)
73 PRK03910 D-cysteine desulfhydr 100.0 3.4E-33 7.4E-38 230.5 13.7 185 2-194 38-283 (331)
74 PRK13802 bifunctional indole-3 100.0 2.8E-32 6E-37 240.2 20.1 185 2-194 355-625 (695)
75 PRK12390 1-aminocyclopropane-1 100.0 8.9E-32 1.9E-36 222.6 14.6 185 2-194 40-289 (337)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 1.9E-31 4E-36 220.7 15.3 185 2-194 39-288 (337)
77 PRK14045 1-aminocyclopropane-1 100.0 1.3E-31 2.7E-36 221.0 12.8 183 2-194 44-281 (329)
78 PRK13803 bifunctional phosphor 100.0 2.5E-30 5.5E-35 227.5 17.6 185 2-194 294-561 (610)
79 COG0498 ThrC Threonine synthas 100.0 3.6E-28 7.9E-33 203.0 15.2 184 2-194 102-338 (411)
80 PRK09225 threonine synthase; V 99.9 2.1E-21 4.7E-26 165.5 15.2 182 2-194 104-381 (462)
81 COG0133 TrpB Tryptophan syntha 99.9 2.8E-21 6.1E-26 153.8 13.6 181 3-194 80-346 (396)
82 cd01560 Thr-synth_2 Threonine 99.8 3.1E-20 6.7E-25 158.5 15.7 185 2-194 103-384 (460)
83 KOG1395 Tryptophan synthase be 99.8 3.5E-19 7.6E-24 143.4 10.6 185 2-194 147-414 (477)
84 COG2515 Acd 1-aminocyclopropan 99.8 1.9E-17 4.1E-22 131.5 12.7 180 7-194 45-277 (323)
85 COG1350 Predicted alternative 99.7 1.7E-17 3.7E-22 132.7 12.3 186 2-194 103-379 (432)
86 COG3048 DsdA D-serine dehydrat 99.6 7.1E-15 1.5E-19 116.9 10.5 189 5-194 113-382 (443)
87 COG0604 Qor NADPH:quinone redu 92.0 3.6 7.9E-05 34.1 11.3 102 24-134 137-241 (326)
88 cd08281 liver_ADH_like1 Zinc-d 91.9 6.5 0.00014 32.8 13.0 102 23-133 185-289 (371)
89 PF02254 TrkA_N: TrkA-N domain 91.8 3 6.5E-05 28.5 9.8 96 36-135 1-97 (116)
90 cd08230 glucose_DH Glucose deh 91.7 6.8 0.00015 32.4 13.1 97 28-133 171-268 (355)
91 KOG0022 Alcohol dehydrogenase, 91.4 4.7 0.0001 33.5 10.8 163 21-189 184-365 (375)
92 PF01210 NAD_Gly3P_dh_N: NAD-d 91.1 0.75 1.6E-05 33.8 5.7 99 36-137 2-105 (157)
93 cd08233 butanediol_DH_like (2R 91.0 5.2 0.00011 32.9 11.3 103 22-133 165-271 (351)
94 cd08256 Zn_ADH2 Alcohol dehydr 90.9 7.9 0.00017 31.8 12.5 102 23-133 168-273 (350)
95 PRK10669 putative cation:proto 90.6 3.4 7.5E-05 36.8 10.5 95 35-134 419-515 (558)
96 cd08287 FDH_like_ADH3 formalde 90.6 6.3 0.00014 32.2 11.4 102 24-134 163-268 (345)
97 TIGR03451 mycoS_dep_FDH mycoth 90.4 5.8 0.00012 32.9 11.2 93 23-121 170-266 (358)
98 PRK10309 galactitol-1-phosphat 90.0 8 0.00017 31.8 11.7 94 22-121 153-250 (347)
99 cd08285 NADP_ADH NADP(H)-depen 90.0 6.9 0.00015 32.2 11.3 102 23-133 160-265 (351)
100 PRK10537 voltage-gated potassi 89.9 7.2 0.00016 33.3 11.3 95 35-135 242-337 (393)
101 TIGR03366 HpnZ_proposed putati 89.7 9 0.00019 30.6 13.2 103 21-133 112-217 (280)
102 cd08239 THR_DH_like L-threonin 89.6 8.6 0.00019 31.4 11.5 102 22-133 156-261 (339)
103 cd08300 alcohol_DH_class_III c 89.4 11 0.00023 31.4 12.1 87 23-114 180-270 (368)
104 PLN02740 Alcohol dehydrogenase 89.3 12 0.00026 31.4 12.4 93 23-121 192-289 (381)
105 PRK03659 glutathione-regulated 89.1 5 0.00011 36.2 10.3 96 35-135 402-499 (601)
106 PRK09880 L-idonate 5-dehydroge 89.0 12 0.00025 30.9 12.4 97 27-133 167-265 (343)
107 PLN02827 Alcohol dehydrogenase 88.8 12 0.00027 31.4 12.0 93 23-121 187-284 (378)
108 PLN03154 putative allyl alcoho 88.7 12 0.00026 31.0 11.8 100 24-133 153-257 (348)
109 PRK03562 glutathione-regulated 88.3 7.7 0.00017 35.2 11.0 94 35-133 402-497 (621)
110 TIGR02818 adh_III_F_hyde S-(hy 88.3 14 0.0003 30.9 12.8 94 23-121 179-276 (368)
111 PRK13656 trans-2-enoyl-CoA red 88.2 7.3 0.00016 33.3 10.0 57 3-63 15-73 (398)
112 PF02826 2-Hacid_dh_C: D-isome 88.0 5 0.00011 30.0 8.3 100 29-135 35-153 (178)
113 COG1063 Tdh Threonine dehydrog 87.7 15 0.00033 30.6 12.8 94 36-135 172-272 (350)
114 PRK05993 short chain dehydroge 87.6 3.7 7.9E-05 32.7 7.8 76 35-111 7-87 (277)
115 cd08240 6_hydroxyhexanoate_dh_ 87.5 15 0.00032 30.2 11.6 96 29-133 175-273 (350)
116 PF00107 ADH_zinc_N: Zinc-bind 87.5 1.4 3E-05 30.7 4.7 84 45-134 3-89 (130)
117 cd08295 double_bond_reductase_ 87.1 15 0.00033 30.0 12.1 100 24-133 146-250 (338)
118 TIGR02819 fdhA_non_GSH formald 87.1 18 0.00038 30.7 13.7 85 22-111 178-265 (393)
119 cd08278 benzyl_alcohol_DH Benz 86.7 13 0.00028 30.9 10.9 101 24-133 181-284 (365)
120 cd08261 Zn_ADH7 Alcohol dehydr 86.5 16 0.00035 29.7 11.3 102 23-134 153-258 (337)
121 PRK12743 oxidoreductase; Provi 86.3 5.6 0.00012 31.1 8.1 77 35-112 5-92 (256)
122 cd08277 liver_alcohol_DH_like 86.1 19 0.0004 30.0 12.3 88 23-116 178-270 (365)
123 PRK05396 tdh L-threonine 3-deh 84.7 16 0.00035 29.9 10.4 97 28-133 162-262 (341)
124 COG2130 Putative NADP-dependen 84.6 9.3 0.0002 31.6 8.5 103 21-132 142-247 (340)
125 cd01075 NAD_bind_Leu_Phe_Val_D 84.4 5.7 0.00012 30.4 7.1 50 10-62 5-57 (200)
126 cd08297 CAD3 Cinnamyl alcohol 84.1 20 0.00043 29.2 10.7 99 26-133 162-264 (341)
127 PRK06057 short chain dehydroge 84.1 6 0.00013 30.9 7.3 76 35-111 10-90 (255)
128 PRK08862 short chain dehydroge 84.1 6.8 0.00015 30.4 7.5 77 35-111 8-94 (227)
129 cd08235 iditol_2_DH_like L-idi 83.3 23 0.0005 28.8 11.9 103 23-134 159-265 (343)
130 cd08301 alcohol_DH_plants Plan 83.3 25 0.00054 29.2 12.7 92 24-121 182-278 (369)
131 cd08269 Zn_ADH9 Alcohol dehydr 83.1 22 0.00047 28.4 11.7 101 23-133 123-228 (312)
132 cd08294 leukotriene_B4_DH_like 82.9 23 0.0005 28.5 10.7 101 23-133 137-240 (329)
133 TIGR02825 B4_12hDH leukotriene 82.9 24 0.00051 28.6 11.2 101 23-133 132-236 (325)
134 PRK08177 short chain dehydroge 82.7 12 0.00026 28.6 8.4 77 35-111 4-82 (225)
135 cd08296 CAD_like Cinnamyl alco 81.9 26 0.00057 28.5 11.0 97 26-133 160-258 (333)
136 TIGR00692 tdh L-threonine 3-de 81.9 25 0.00054 28.7 10.5 99 27-134 159-261 (340)
137 PRK06483 dihydromonapterin red 81.7 15 0.00031 28.3 8.6 75 35-110 5-84 (236)
138 PRK08340 glucose-1-dehydrogena 81.4 8.8 0.00019 30.1 7.4 76 35-111 3-87 (259)
139 cd05288 PGDH Prostaglandin deh 81.3 27 0.00058 28.2 11.5 99 25-133 141-243 (329)
140 PRK07060 short chain dehydroge 80.9 9.5 0.00021 29.3 7.3 76 35-111 12-88 (245)
141 cd08231 MDR_TM0436_like Hypoth 80.6 31 0.00067 28.4 11.9 97 27-133 175-279 (361)
142 KOG1197 Predicted quinone oxid 80.4 26 0.00056 28.5 9.3 95 23-123 140-237 (336)
143 PRK12481 2-deoxy-D-gluconate 3 80.3 8.9 0.00019 30.0 7.0 76 35-111 11-94 (251)
144 PRK05884 short chain dehydroge 80.2 10 0.00023 29.1 7.3 73 35-110 3-79 (223)
145 cd05279 Zn_ADH1 Liver alcohol 80.1 33 0.00072 28.5 11.5 101 24-133 178-284 (365)
146 PRK06463 fabG 3-ketoacyl-(acyl 80.1 13 0.00029 28.9 7.9 76 35-111 10-90 (255)
147 PRK08643 acetoin reductase; Va 80.1 12 0.00026 29.1 7.7 76 35-111 5-90 (256)
148 cd08284 FDH_like_2 Glutathione 80.0 31 0.00067 28.1 12.6 100 26-134 164-266 (344)
149 PRK05866 short chain dehydroge 79.5 10 0.00022 30.7 7.2 76 35-111 43-128 (293)
150 cd08293 PTGR2 Prostaglandin re 79.4 32 0.0007 28.0 11.7 100 24-133 147-253 (345)
151 PRK06182 short chain dehydroge 79.3 10 0.00022 29.9 7.2 75 35-112 6-86 (273)
152 PRK12825 fabG 3-ketoacyl-(acyl 78.9 14 0.00031 28.2 7.7 76 35-111 9-95 (249)
153 PRK07774 short chain dehydroge 78.7 13 0.00029 28.7 7.5 76 35-111 9-94 (250)
154 COG0240 GpsA Glycerol-3-phosph 78.6 30 0.00065 28.9 9.6 77 36-114 4-85 (329)
155 cd08258 Zn_ADH4 Alcohol dehydr 78.5 33 0.00073 27.6 12.1 102 25-134 160-264 (306)
156 PRK08264 short chain dehydroge 78.2 14 0.0003 28.3 7.5 72 35-110 9-83 (238)
157 PRK06953 short chain dehydroge 78.1 15 0.00033 27.9 7.6 76 35-111 4-81 (222)
158 PRK07454 short chain dehydroge 78.1 12 0.00027 28.7 7.2 76 35-111 9-94 (241)
159 PRK08993 2-deoxy-D-gluconate 3 78.1 15 0.00032 28.7 7.6 75 35-111 13-96 (253)
160 PRK05693 short chain dehydroge 78.1 12 0.00027 29.5 7.3 76 35-111 4-83 (274)
161 PRK08703 short chain dehydroge 77.9 16 0.00035 28.0 7.8 31 35-65 9-39 (239)
162 TIGR01832 kduD 2-deoxy-D-gluco 77.5 16 0.00034 28.2 7.6 76 35-111 8-91 (248)
163 cd05281 TDH Threonine dehydrog 77.4 38 0.00082 27.7 10.5 97 28-133 162-261 (341)
164 PF00670 AdoHcyase_NAD: S-aden 77.2 18 0.00039 26.9 7.3 76 26-116 19-94 (162)
165 PRK14620 NAD(P)H-dependent gly 77.2 39 0.00084 27.7 10.2 95 36-131 3-103 (326)
166 PRK05650 short chain dehydroge 77.1 15 0.00032 29.0 7.4 77 35-112 3-89 (270)
167 PRK12384 sorbitol-6-phosphate 77.0 16 0.00035 28.4 7.6 31 35-65 5-35 (259)
168 TIGR03201 dearomat_had 6-hydro 76.7 41 0.00089 27.7 12.1 39 21-62 158-196 (349)
169 PRK07666 fabG 3-ketoacyl-(acyl 76.6 14 0.00031 28.4 7.1 76 35-111 10-95 (239)
170 PRK10083 putative oxidoreducta 76.3 40 0.00087 27.4 11.4 104 22-134 153-259 (339)
171 PRK06200 2,3-dihydroxy-2,3-dih 76.3 15 0.00032 28.8 7.2 76 35-111 9-91 (263)
172 PRK13394 3-hydroxybutyrate deh 76.3 17 0.00036 28.3 7.5 76 35-111 10-95 (262)
173 PRK10538 malonic semialdehyde 76.1 15 0.00033 28.4 7.2 76 35-111 3-85 (248)
174 PRK09496 trkA potassium transp 76.1 49 0.0011 28.3 11.2 93 36-133 3-98 (453)
175 TIGR03325 BphB_TodD cis-2,3-di 76.1 17 0.00038 28.4 7.6 75 35-110 8-89 (262)
176 PRK07478 short chain dehydroge 75.9 16 0.00034 28.5 7.2 76 35-111 9-94 (254)
177 cd08292 ETR_like_2 2-enoyl thi 75.9 39 0.00085 27.1 12.3 102 23-133 133-237 (324)
178 PRK08063 enoyl-(acyl carrier p 75.8 19 0.00042 27.7 7.7 76 35-111 7-93 (250)
179 COG0300 DltE Short-chain dehyd 75.7 18 0.00039 29.2 7.4 79 35-113 9-97 (265)
180 PRK12809 putative oxidoreducta 75.5 48 0.001 30.2 11.0 31 35-65 312-342 (639)
181 PRK05557 fabG 3-ketoacyl-(acyl 75.4 24 0.00053 26.9 8.2 76 35-111 8-94 (248)
182 cd08299 alcohol_DH_class_I_II_ 75.3 47 0.001 27.7 11.3 88 23-116 184-276 (373)
183 PRK13243 glyoxylate reductase; 75.2 29 0.00062 28.9 8.8 85 36-122 153-255 (333)
184 PRK07890 short chain dehydroge 75.1 17 0.00036 28.2 7.2 30 35-64 8-37 (258)
185 PRK08936 glucose-1-dehydrogena 75.0 20 0.00043 28.0 7.7 76 35-111 10-96 (261)
186 PRK07326 short chain dehydroge 75.0 16 0.00036 27.9 7.1 77 35-112 9-94 (237)
187 PRK07523 gluconate 5-dehydroge 74.9 16 0.00035 28.4 7.1 30 35-64 13-42 (255)
188 PRK06179 short chain dehydroge 74.7 21 0.00046 28.0 7.8 73 35-111 7-84 (270)
189 PRK06500 short chain dehydroge 74.7 19 0.00041 27.7 7.3 30 35-64 9-38 (249)
190 PRK07832 short chain dehydroge 74.4 17 0.00036 28.7 7.1 30 35-64 3-32 (272)
191 PRK09291 short chain dehydroge 74.4 17 0.00038 28.1 7.1 75 35-111 5-84 (257)
192 PRK06181 short chain dehydroge 74.2 20 0.00043 28.0 7.5 77 35-112 4-90 (263)
193 PRK08265 short chain dehydroge 74.2 25 0.00054 27.6 8.0 76 35-111 9-91 (261)
194 PRK06180 short chain dehydroge 74.2 22 0.00047 28.2 7.8 76 35-111 7-89 (277)
195 PRK05717 oxidoreductase; Valid 74.0 22 0.00048 27.6 7.6 76 35-111 13-95 (255)
196 COG0027 PurT Formate-dependent 74.0 12 0.00026 31.1 6.1 30 35-64 14-43 (394)
197 PRK07074 short chain dehydroge 73.9 20 0.00044 27.8 7.4 76 35-111 5-88 (257)
198 PRK07067 sorbitol dehydrogenas 73.8 20 0.00043 27.9 7.3 76 35-111 9-91 (257)
199 PRK06172 short chain dehydroge 73.6 19 0.00042 27.9 7.2 75 35-110 10-94 (253)
200 PRK12779 putative bifunctional 73.6 22 0.00047 34.1 8.5 29 35-63 308-336 (944)
201 KOG1198 Zinc-binding oxidoredu 73.5 49 0.0011 27.8 9.8 88 26-117 154-242 (347)
202 PF04127 DFP: DNA / pantothena 73.3 6.7 0.00014 29.8 4.3 31 36-66 23-53 (185)
203 PRK14030 glutamate dehydrogena 73.2 24 0.00053 30.7 8.1 59 10-71 207-274 (445)
204 PRK07231 fabG 3-ketoacyl-(acyl 73.2 18 0.0004 27.8 7.0 31 35-65 8-38 (251)
205 PLN00141 Tic62-NAD(P)-related 73.0 24 0.00051 27.6 7.6 76 35-111 20-96 (251)
206 PTZ00079 NADP-specific glutama 73.0 26 0.00057 30.6 8.2 60 10-72 216-284 (454)
207 PRK08267 short chain dehydroge 72.7 24 0.00053 27.5 7.6 78 35-112 4-89 (260)
208 PRK08226 short chain dehydroge 72.6 21 0.00046 27.8 7.2 74 35-110 9-92 (263)
209 PRK12826 3-ketoacyl-(acyl-carr 72.6 18 0.0004 27.7 6.8 77 35-112 9-95 (251)
210 COG0026 PurK Phosphoribosylami 72.6 13 0.00028 31.5 6.0 37 36-72 4-40 (375)
211 PF00106 adh_short: short chai 72.4 32 0.00069 24.6 7.7 78 35-112 3-92 (167)
212 PRK07097 gluconate 5-dehydroge 72.3 28 0.00061 27.2 7.9 29 35-63 13-41 (265)
213 cd08282 PFDH_like Pseudomonas 72.2 56 0.0012 27.2 13.1 102 23-130 170-281 (375)
214 PF13460 NAD_binding_10: NADH( 72.2 35 0.00077 24.9 10.9 94 36-137 2-100 (183)
215 PRK06947 glucose-1-dehydrogena 72.1 27 0.00058 26.9 7.7 29 35-63 5-33 (248)
216 cd05278 FDH_like Formaldehyde 72.0 52 0.0011 26.7 11.5 101 24-133 162-266 (347)
217 PRK07066 3-hydroxybutyryl-CoA 72.0 52 0.0011 27.3 9.5 31 36-66 10-40 (321)
218 PRK07825 short chain dehydroge 71.9 21 0.00046 28.1 7.1 76 35-111 8-89 (273)
219 PRK12742 oxidoreductase; Provi 71.9 29 0.00063 26.5 7.8 76 35-111 9-86 (237)
220 PF05368 NmrA: NmrA-like famil 71.7 23 0.0005 27.2 7.2 71 36-109 2-73 (233)
221 PRK08085 gluconate 5-dehydroge 71.5 23 0.0005 27.5 7.2 29 35-63 12-40 (254)
222 cd00401 AdoHcyase S-adenosyl-L 71.5 66 0.0014 27.7 11.2 91 25-133 197-288 (413)
223 PTZ00075 Adenosylhomocysteinas 71.5 42 0.00092 29.5 9.2 32 28-62 252-283 (476)
224 PRK06077 fabG 3-ketoacyl-(acyl 71.4 30 0.00066 26.6 7.8 76 35-111 9-95 (252)
225 PRK12939 short chain dehydroge 71.2 25 0.00053 27.0 7.3 29 35-63 10-38 (250)
226 PRK06841 short chain dehydroge 71.1 27 0.00059 27.0 7.6 75 35-111 18-100 (255)
227 PRK12937 short chain dehydroge 70.7 28 0.00061 26.7 7.5 76 35-111 8-94 (245)
228 cd08274 MDR9 Medium chain dehy 70.7 56 0.0012 26.6 12.9 101 22-133 170-272 (350)
229 cd08279 Zn_ADH_class_III Class 70.6 60 0.0013 26.8 11.8 102 24-134 177-282 (363)
230 PRK07035 short chain dehydroge 70.3 24 0.00052 27.3 7.1 30 35-64 11-40 (252)
231 PRK06935 2-deoxy-D-gluconate 3 70.2 44 0.00095 26.0 8.6 75 35-111 18-102 (258)
232 PRK08628 short chain dehydroge 70.2 31 0.00066 26.8 7.7 75 35-111 10-94 (258)
233 PRK05653 fabG 3-ketoacyl-(acyl 70.0 32 0.00069 26.2 7.6 76 35-111 8-93 (246)
234 PRK08277 D-mannonate oxidoredu 69.8 26 0.00056 27.6 7.2 31 35-65 13-43 (278)
235 PRK12745 3-ketoacyl-(acyl-carr 69.7 36 0.00078 26.3 8.0 76 35-111 5-91 (256)
236 PRK08642 fabG 3-ketoacyl-(acyl 69.6 30 0.00065 26.7 7.5 76 35-110 8-91 (253)
237 PRK06079 enoyl-(acyl carrier p 69.6 28 0.0006 27.2 7.3 75 35-111 10-94 (252)
238 COG1250 FadB 3-hydroxyacyl-CoA 69.3 48 0.001 27.4 8.7 101 36-139 6-145 (307)
239 PRK07024 short chain dehydroge 69.1 26 0.00057 27.3 7.0 30 35-64 5-34 (257)
240 PF00070 Pyr_redox: Pyridine n 69.0 22 0.00048 22.4 5.5 32 36-67 2-33 (80)
241 PRK12828 short chain dehydroge 69.0 35 0.00076 25.9 7.6 31 35-65 10-40 (239)
242 PRK05872 short chain dehydroge 68.8 23 0.0005 28.5 6.8 76 35-111 12-96 (296)
243 PRK07102 short chain dehydroge 68.5 29 0.00063 26.7 7.1 77 35-111 4-87 (243)
244 PLN02586 probable cinnamyl alc 68.2 69 0.0015 26.6 12.9 97 26-133 180-277 (360)
245 PRK06505 enoyl-(acyl carrier p 68.2 34 0.00073 27.2 7.6 76 35-111 10-96 (271)
246 PRK05867 short chain dehydroge 68.2 26 0.00057 27.2 6.9 30 35-64 12-41 (253)
247 PF13561 adh_short_C2: Enoyl-( 68.1 16 0.00034 28.3 5.6 73 40-112 4-85 (241)
248 PRK07814 short chain dehydroge 68.0 30 0.00064 27.1 7.2 76 35-111 13-98 (263)
249 TIGR02437 FadB fatty oxidation 67.8 42 0.00092 31.1 8.9 99 35-136 315-452 (714)
250 PRK06114 short chain dehydroge 67.6 49 0.0011 25.7 8.3 76 35-111 11-97 (254)
251 TIGR02415 23BDH acetoin reduct 67.5 31 0.00068 26.6 7.2 75 35-110 3-87 (254)
252 PLN02253 xanthoxin dehydrogena 67.1 30 0.00064 27.3 7.1 76 35-111 21-105 (280)
253 PRK08410 2-hydroxyacid dehydro 66.9 34 0.00073 28.2 7.4 96 36-136 148-258 (311)
254 PRK06194 hypothetical protein; 66.9 36 0.00078 26.9 7.5 77 35-112 9-95 (287)
255 PRK06139 short chain dehydroge 66.9 24 0.00052 29.1 6.6 30 35-64 10-39 (330)
256 PRK06482 short chain dehydroge 66.8 39 0.00084 26.6 7.7 76 35-111 5-87 (276)
257 TIGR01829 AcAcCoA_reduct aceto 66.7 46 0.001 25.3 7.9 76 35-111 3-89 (242)
258 cd05313 NAD_bind_2_Glu_DH NAD( 66.6 42 0.00092 26.9 7.7 50 10-62 17-67 (254)
259 PRK07109 short chain dehydroge 66.6 29 0.00063 28.6 7.1 76 35-111 11-96 (334)
260 PRK07856 short chain dehydroge 65.9 35 0.00075 26.5 7.1 73 35-111 9-86 (252)
261 PF02737 3HCDH_N: 3-hydroxyacy 65.9 15 0.00033 27.5 4.9 31 36-66 2-32 (180)
262 cd08234 threonine_DH_like L-th 65.7 70 0.0015 25.8 12.5 102 23-134 153-257 (334)
263 PRK05875 short chain dehydroge 65.6 36 0.00079 26.7 7.3 30 35-64 10-39 (276)
264 PRK06128 oxidoreductase; Provi 65.6 42 0.0009 27.0 7.7 29 35-63 58-86 (300)
265 TIGR02822 adh_fam_2 zinc-bindi 65.6 74 0.0016 26.0 11.9 92 22-131 158-251 (329)
266 PRK08416 7-alpha-hydroxysteroi 65.5 42 0.0009 26.2 7.6 30 35-64 11-40 (260)
267 TIGR03206 benzo_BadH 2-hydroxy 65.5 32 0.0007 26.4 6.9 31 35-65 6-36 (250)
268 PRK12824 acetoacetyl-CoA reduc 65.5 46 0.001 25.4 7.7 76 35-111 5-91 (245)
269 PRK12935 acetoacetyl-CoA reduc 65.4 57 0.0012 25.0 8.3 29 35-63 9-37 (247)
270 PRK08263 short chain dehydroge 65.3 39 0.00084 26.6 7.4 76 35-111 6-88 (275)
271 PRK08213 gluconate 5-dehydroge 65.3 34 0.00073 26.6 7.0 75 35-110 15-99 (259)
272 PRK09134 short chain dehydroge 65.1 46 0.001 25.8 7.8 30 35-64 12-41 (258)
273 PRK09242 tropinone reductase; 64.9 37 0.0008 26.4 7.2 76 35-111 12-99 (257)
274 PRK06101 short chain dehydroge 64.9 39 0.00085 26.0 7.3 74 35-111 4-82 (240)
275 PRK12429 3-hydroxybutyrate deh 64.9 43 0.00093 25.8 7.5 76 35-111 7-92 (258)
276 PRK12829 short chain dehydroge 64.8 37 0.0008 26.3 7.2 76 35-111 14-97 (264)
277 PRK09186 flagellin modificatio 64.8 47 0.001 25.6 7.7 30 35-64 7-36 (256)
278 cd08236 sugar_DH NAD(P)-depend 64.8 75 0.0016 25.8 11.8 99 26-134 156-258 (343)
279 PRK09072 short chain dehydroge 64.8 24 0.00053 27.6 6.1 77 35-111 8-91 (263)
280 PRK06701 short chain dehydroge 64.7 47 0.001 26.6 7.9 76 35-111 49-135 (290)
281 PRK08017 oxidoreductase; Provi 64.5 42 0.00091 25.9 7.4 75 35-112 5-86 (256)
282 PRK07063 short chain dehydroge 64.4 36 0.00078 26.5 7.0 30 35-64 10-39 (260)
283 PRK08217 fabG 3-ketoacyl-(acyl 64.4 38 0.00083 25.9 7.1 30 35-64 8-37 (253)
284 PRK05786 fabG 3-ketoacyl-(acyl 64.3 44 0.00096 25.4 7.4 31 35-65 8-38 (238)
285 PRK12827 short chain dehydroge 64.3 50 0.0011 25.2 7.7 30 35-64 9-38 (249)
286 cd05211 NAD_bind_Glu_Leu_Phe_V 64.2 50 0.0011 25.7 7.6 51 12-65 4-55 (217)
287 PRK06949 short chain dehydroge 64.1 37 0.0008 26.3 7.0 30 35-64 12-41 (258)
288 PRK05876 short chain dehydroge 64.1 35 0.00076 27.1 6.9 29 35-63 9-37 (275)
289 cd08255 2-desacetyl-2-hydroxye 64.1 68 0.0015 25.1 9.7 95 24-133 92-189 (277)
290 cd08260 Zn_ADH6 Alcohol dehydr 64.1 78 0.0017 25.8 11.0 100 24-133 160-263 (345)
291 cd05285 sorbitol_DH Sorbitol d 64.1 79 0.0017 25.8 12.5 103 22-133 155-264 (343)
292 PRK06125 short chain dehydroge 64.0 42 0.00092 26.1 7.4 76 35-111 10-92 (259)
293 TIGR00670 asp_carb_tr aspartat 63.9 25 0.00055 28.9 6.1 42 22-67 143-187 (301)
294 PRK07023 short chain dehydroge 63.6 51 0.0011 25.3 7.7 31 35-65 4-34 (243)
295 PF13450 NAD_binding_8: NAD(P) 63.4 13 0.00027 23.1 3.4 27 40-66 3-29 (68)
296 PRK08589 short chain dehydroge 63.3 43 0.00094 26.4 7.3 75 35-111 9-93 (272)
297 cd08242 MDR_like Medium chain 63.2 77 0.0017 25.4 10.1 95 22-132 148-243 (319)
298 PRK12480 D-lactate dehydrogena 62.9 49 0.0011 27.5 7.8 30 36-65 149-178 (330)
299 TIGR01751 crot-CoA-red crotony 62.9 92 0.002 26.2 10.6 37 25-63 185-221 (398)
300 PRK06138 short chain dehydroge 62.8 44 0.00095 25.7 7.2 76 35-111 8-92 (252)
301 PRK08594 enoyl-(acyl carrier p 62.5 60 0.0013 25.4 8.0 76 35-111 10-98 (257)
302 PRK06523 short chain dehydroge 62.3 43 0.00093 26.0 7.1 71 35-110 12-87 (260)
303 PRK06398 aldose dehydrogenase; 62.2 36 0.00077 26.6 6.6 70 35-111 9-83 (258)
304 PLN02178 cinnamyl-alcohol dehy 62.1 95 0.002 26.1 10.8 94 28-133 177-272 (375)
305 PRK07677 short chain dehydroge 62.0 44 0.00096 25.9 7.1 30 35-64 4-33 (252)
306 PRK06436 glycerate dehydrogena 61.9 86 0.0019 25.7 8.9 84 36-122 125-224 (303)
307 PRK07806 short chain dehydroge 61.8 63 0.0014 24.8 7.9 31 35-65 9-39 (248)
308 PRK09009 C factor cell-cell si 61.8 33 0.00072 26.2 6.3 75 35-112 3-79 (235)
309 PRK00257 erythronate-4-phospha 61.7 30 0.00065 29.5 6.3 97 20-122 106-222 (381)
310 PRK06171 sorbitol-6-phosphate 61.5 48 0.001 25.8 7.3 72 35-111 12-88 (266)
311 PF00185 OTCace: Aspartate/orn 61.5 15 0.00032 27.0 4.0 34 36-69 5-42 (158)
312 PRK09414 glutamate dehydrogena 61.4 40 0.00087 29.4 7.1 51 10-63 211-262 (445)
313 PRK08220 2,3-dihydroxybenzoate 61.3 53 0.0012 25.2 7.4 73 35-111 11-87 (252)
314 KOG1210 Predicted 3-ketosphing 61.3 85 0.0018 26.1 8.5 75 36-110 37-122 (331)
315 PRK07062 short chain dehydroge 61.3 46 0.00099 26.0 7.1 31 35-65 11-41 (265)
316 PRK06914 short chain dehydroge 61.2 51 0.0011 26.0 7.4 31 35-65 6-36 (280)
317 PLN03139 formate dehydrogenase 61.2 75 0.0016 27.1 8.6 30 36-65 202-231 (386)
318 PRK06124 gluconate 5-dehydroge 61.2 49 0.0011 25.6 7.2 76 35-111 14-99 (256)
319 PRK05565 fabG 3-ketoacyl-(acyl 61.2 57 0.0012 24.8 7.6 76 35-111 8-94 (247)
320 PRK08278 short chain dehydroge 61.0 51 0.0011 26.1 7.4 31 35-65 9-39 (273)
321 PF12242 Eno-Rase_NADH_b: NAD( 60.8 43 0.00092 21.7 5.4 50 14-65 23-73 (78)
322 PRK08251 short chain dehydroge 60.7 52 0.0011 25.2 7.3 30 35-64 5-34 (248)
323 PRK13581 D-3-phosphoglycerate 60.7 58 0.0013 29.0 8.2 85 36-123 143-246 (526)
324 PRK09135 pteridine reductase; 60.7 64 0.0014 24.6 7.8 32 35-66 9-40 (249)
325 cd08249 enoyl_reductase_like e 60.6 92 0.002 25.4 9.7 97 28-134 153-254 (339)
326 PRK00856 pyrB aspartate carbam 60.5 31 0.00068 28.4 6.1 42 22-67 149-193 (305)
327 PRK08339 short chain dehydroge 60.3 41 0.0009 26.4 6.7 30 35-64 11-40 (263)
328 PRK12823 benD 1,6-dihydroxycyc 60.3 42 0.00091 26.0 6.7 30 35-64 11-40 (260)
329 TIGR01327 PGDH D-3-phosphoglyc 60.2 63 0.0014 28.7 8.3 85 36-123 141-245 (525)
330 PRK06720 hypothetical protein; 60.2 66 0.0014 23.8 7.4 30 35-64 19-48 (169)
331 COG1064 AdhP Zn-dependent alco 60.1 1E+02 0.0022 25.9 10.0 157 20-189 157-326 (339)
332 COG0078 ArgF Ornithine carbamo 60.1 35 0.00075 28.2 6.1 43 23-69 147-190 (310)
333 PF12000 Glyco_trans_4_3: Gkyc 59.9 15 0.00033 27.5 3.8 32 98-134 64-95 (171)
334 PRK06997 enoyl-(acyl carrier p 59.8 64 0.0014 25.3 7.7 76 35-111 9-95 (260)
335 PRK15438 erythronate-4-phospha 59.7 38 0.00082 28.8 6.6 96 23-123 109-223 (378)
336 PRK08159 enoyl-(acyl carrier p 59.7 57 0.0012 25.9 7.4 76 35-111 13-99 (272)
337 PRK08945 putative oxoacyl-(acy 59.6 55 0.0012 25.2 7.2 31 35-65 15-45 (247)
338 PRK14031 glutamate dehydrogena 59.3 58 0.0013 28.4 7.7 52 10-64 207-259 (444)
339 cd08254 hydroxyacyl_CoA_DH 6-h 59.2 92 0.002 25.0 11.2 100 24-133 160-262 (338)
340 PF07279 DUF1442: Protein of u 59.1 29 0.00063 27.1 5.3 103 21-130 35-144 (218)
341 PRK06487 glycerate dehydrogena 59.1 55 0.0012 27.0 7.4 85 36-123 151-249 (317)
342 cd08289 MDR_yhfp_like Yhfp put 58.8 93 0.002 24.9 11.5 90 35-133 150-242 (326)
343 PRK07069 short chain dehydroge 58.7 70 0.0015 24.5 7.7 31 35-65 2-32 (251)
344 PRK12938 acetyacetyl-CoA reduc 58.6 81 0.0018 24.1 8.2 29 35-63 6-34 (246)
345 PRK07831 short chain dehydroge 58.6 59 0.0013 25.3 7.3 29 35-63 20-49 (262)
346 PRK07574 formate dehydrogenase 58.5 95 0.0021 26.5 8.8 83 36-123 195-300 (385)
347 PRK12367 short chain dehydroge 58.4 73 0.0016 25.0 7.7 73 35-111 17-90 (245)
348 PRK13982 bifunctional SbtC-lik 58.1 11 0.00025 32.9 3.3 25 40-64 280-304 (475)
349 PRK08261 fabG 3-ketoacyl-(acyl 58.0 65 0.0014 27.6 8.0 76 35-111 213-295 (450)
350 PRK12439 NAD(P)H-dependent gly 58.0 1.1E+02 0.0024 25.4 10.0 96 36-134 10-111 (341)
351 PRK09422 ethanol-active dehydr 58.0 99 0.0022 25.0 11.0 101 23-133 156-260 (338)
352 PRK12936 3-ketoacyl-(acyl-carr 57.9 76 0.0017 24.1 7.7 28 35-62 9-36 (245)
353 PRK06111 acetyl-CoA carboxylas 57.8 58 0.0013 28.0 7.6 31 36-66 5-35 (450)
354 PRK06197 short chain dehydroge 57.6 49 0.0011 26.6 6.8 31 35-65 19-49 (306)
355 KOG0399 Glutamate synthase [Am 57.4 90 0.002 31.1 8.9 51 15-65 1763-1817(2142)
356 PF12831 FAD_oxidored: FAD dep 57.1 18 0.00038 31.1 4.3 31 36-66 2-32 (428)
357 PF00890 FAD_binding_2: FAD bi 57.0 19 0.00041 30.5 4.5 31 36-66 2-32 (417)
358 PF13478 XdhC_C: XdhC Rossmann 57.0 16 0.00036 26.2 3.5 31 36-66 1-31 (136)
359 PRK11730 fadB multifunctional 56.9 87 0.0019 29.1 8.9 32 35-66 315-346 (715)
360 PRK06113 7-alpha-hydroxysteroi 56.8 65 0.0014 25.0 7.2 30 35-64 14-43 (255)
361 TIGR00521 coaBC_dfp phosphopan 56.7 29 0.00064 29.6 5.5 26 40-65 209-234 (390)
362 PTZ00345 glycerol-3-phosphate 56.6 92 0.002 26.4 8.4 31 36-66 14-51 (365)
363 PRK15409 bifunctional glyoxyla 56.4 90 0.0019 25.9 8.2 85 36-122 148-251 (323)
364 cd08286 FDH_like_ADH2 formalde 56.4 1.1E+02 0.0023 24.9 11.2 98 26-133 163-265 (345)
365 PRK08690 enoyl-(acyl carrier p 56.2 78 0.0017 24.8 7.6 76 35-111 9-95 (261)
366 PRK07533 enoyl-(acyl carrier p 56.1 93 0.002 24.3 8.1 75 36-111 14-99 (258)
367 CHL00194 ycf39 Ycf39; Provisio 56.0 61 0.0013 26.3 7.2 31 35-65 3-33 (317)
368 cd05284 arabinose_DH_like D-ar 55.8 1.1E+02 0.0024 24.8 11.5 96 27-133 165-265 (340)
369 PRK07791 short chain dehydroge 55.6 1E+02 0.0023 24.5 8.6 29 35-63 9-37 (286)
370 KOG1205 Predicted dehydrogenas 55.5 87 0.0019 25.6 7.7 77 35-112 15-103 (282)
371 PRK06932 glycerate dehydrogena 55.4 64 0.0014 26.6 7.1 86 36-123 150-249 (314)
372 PLN02657 3,8-divinyl protochlo 55.3 78 0.0017 26.8 7.9 32 35-66 63-94 (390)
373 PRK06202 hypothetical protein; 55.3 19 0.00041 28.0 3.9 38 101-138 62-99 (232)
374 PRK07985 oxidoreductase; Provi 55.3 76 0.0017 25.5 7.6 29 35-63 52-80 (294)
375 PRK13814 pyrB aspartate carbam 55.1 43 0.00094 27.6 6.1 42 22-67 150-195 (310)
376 cd08283 FDH_like_1 Glutathione 54.9 1.3E+02 0.0027 25.2 13.2 106 23-134 178-306 (386)
377 PRK06196 oxidoreductase; Provi 54.8 57 0.0012 26.4 6.8 77 35-111 29-110 (315)
378 PRK12746 short chain dehydroge 54.6 82 0.0018 24.2 7.5 30 35-64 9-38 (254)
379 KOG2862 Alanine-glyoxylate ami 54.4 99 0.0022 25.9 7.8 58 26-87 88-153 (385)
380 PRK07889 enoyl-(acyl carrier p 54.4 91 0.002 24.3 7.7 76 35-111 10-96 (256)
381 PRK06484 short chain dehydroge 54.0 69 0.0015 27.9 7.6 75 35-110 8-89 (520)
382 PRK11154 fadJ multifunctional 53.9 1.1E+02 0.0024 28.3 9.1 101 35-138 311-451 (708)
383 PRK07370 enoyl-(acyl carrier p 53.8 1E+02 0.0022 24.1 7.9 29 35-63 9-39 (258)
384 cd08244 MDR_enoyl_red Possible 53.8 1.1E+02 0.0024 24.3 12.1 102 23-134 136-241 (324)
385 PRK12744 short chain dehydroge 53.8 92 0.002 24.1 7.7 29 35-63 11-39 (257)
386 TIGR00877 purD phosphoribosyla 53.6 98 0.0021 26.3 8.3 93 36-135 3-96 (423)
387 COG0334 GdhA Glutamate dehydro 53.5 43 0.00093 28.8 5.9 50 12-64 188-238 (411)
388 cd08245 CAD Cinnamyl alcohol d 53.4 1.2E+02 0.0025 24.4 10.9 96 25-133 158-255 (330)
389 PRK07577 short chain dehydroge 53.3 88 0.0019 23.6 7.4 72 35-112 6-80 (234)
390 PRK09730 putative NAD(P)-bindi 53.3 92 0.002 23.7 7.5 77 35-111 4-90 (247)
391 cd08298 CAD2 Cinnamyl alcohol 53.1 1.2E+02 0.0026 24.4 10.9 93 23-133 161-255 (329)
392 PRK06484 short chain dehydroge 53.0 71 0.0015 27.9 7.5 76 35-111 272-354 (520)
393 TIGR01142 purT phosphoribosylg 52.8 76 0.0017 26.5 7.4 68 36-108 2-70 (380)
394 TIGR01963 PHB_DH 3-hydroxybuty 52.8 74 0.0016 24.4 6.9 31 35-65 4-34 (255)
395 COG1797 CobB Cobyrinic acid a, 52.8 26 0.00057 30.4 4.5 43 93-135 106-148 (451)
396 cd08262 Zn_ADH8 Alcohol dehydr 52.6 1.2E+02 0.0027 24.5 11.5 103 22-133 154-263 (341)
397 PRK15469 ghrA bifunctional gly 52.5 79 0.0017 26.0 7.2 30 36-65 139-168 (312)
398 PF13580 SIS_2: SIS domain; PD 52.4 74 0.0016 22.6 6.3 35 27-63 101-137 (138)
399 cd08238 sorbose_phosphate_red 51.9 1.5E+02 0.0032 25.1 10.7 92 25-120 171-277 (410)
400 PRK06849 hypothetical protein; 51.9 1.1E+02 0.0023 25.8 8.2 34 35-68 7-40 (389)
401 cd08250 Mgc45594_like Mgc45594 50.8 1.3E+02 0.0028 24.1 13.0 99 25-133 135-236 (329)
402 PRK13940 glutamyl-tRNA reducta 50.8 84 0.0018 27.1 7.3 92 13-114 164-256 (414)
403 COG0329 DapA Dihydrodipicolina 50.7 99 0.0021 25.3 7.5 60 2-68 49-111 (299)
404 KOG0024 Sorbitol dehydrogenase 50.5 1.5E+02 0.0033 24.9 9.9 98 20-122 160-264 (354)
405 PRK08415 enoyl-(acyl carrier p 50.5 1E+02 0.0022 24.5 7.5 75 36-111 9-94 (274)
406 PRK08219 short chain dehydroge 50.4 73 0.0016 23.9 6.4 75 35-111 6-82 (227)
407 PRK02102 ornithine carbamoyltr 49.9 60 0.0013 27.1 6.1 41 23-67 149-191 (331)
408 COG0569 TrkA K+ transport syst 49.6 1.2E+02 0.0027 23.5 10.8 94 36-132 3-98 (225)
409 cd01078 NAD_bind_H4MPT_DH NADP 49.5 1.1E+02 0.0024 22.9 7.9 30 35-64 31-60 (194)
410 PLN02702 L-idonate 5-dehydroge 49.3 1.5E+02 0.0032 24.4 12.6 104 23-134 175-285 (364)
411 PRK06847 hypothetical protein; 49.3 32 0.00069 28.5 4.5 28 36-63 7-34 (375)
412 PRK07984 enoyl-(acyl carrier p 49.3 1.3E+02 0.0027 23.8 7.8 75 36-111 10-95 (262)
413 TIGR02853 spore_dpaA dipicolin 49.2 96 0.0021 25.2 7.2 48 14-64 134-182 (287)
414 COG2242 CobL Precorrin-6B meth 48.8 93 0.002 23.8 6.5 94 27-132 32-133 (187)
415 PF02558 ApbA: Ketopantoate re 48.8 52 0.0011 23.3 5.1 95 37-135 2-102 (151)
416 TIGR02685 pter_reduc_Leis pter 48.7 1.3E+02 0.0027 23.6 7.7 30 35-64 4-33 (267)
417 PRK09126 hypothetical protein; 48.7 29 0.00063 28.9 4.3 29 36-64 6-34 (392)
418 PRK07424 bifunctional sterol d 48.6 1.1E+02 0.0023 26.4 7.7 31 35-65 181-211 (406)
419 PRK12749 quinate/shikimate deh 48.6 1.4E+02 0.003 24.3 8.0 31 36-66 127-157 (288)
420 PRK12266 glpD glycerol-3-phosp 48.4 29 0.00064 30.5 4.4 29 36-64 9-37 (508)
421 PF00208 ELFV_dehydrog: Glutam 48.4 64 0.0014 25.6 5.9 49 11-62 11-61 (244)
422 PRK04284 ornithine carbamoyltr 48.3 62 0.0013 27.0 6.0 39 25-67 151-191 (332)
423 PRK07576 short chain dehydroge 48.2 1.1E+02 0.0024 23.9 7.3 30 35-64 12-41 (264)
424 TIGR01202 bchC 2-desacetyl-2-h 48.2 1.5E+02 0.0031 24.0 8.9 72 36-121 149-221 (308)
425 cd05282 ETR_like 2-enoyl thioe 48.2 1.4E+02 0.003 23.7 12.0 99 25-133 134-236 (323)
426 PRK12548 shikimate 5-dehydroge 48.1 86 0.0019 25.4 6.8 29 36-64 129-158 (289)
427 PLN02723 3-mercaptopyruvate su 48.1 73 0.0016 26.3 6.4 53 4-62 246-300 (320)
428 PF01494 FAD_binding_3: FAD bi 48.0 33 0.0007 27.7 4.4 30 36-65 4-33 (356)
429 cd08264 Zn_ADH_like2 Alcohol d 47.8 71 0.0015 25.7 6.3 94 24-133 157-252 (325)
430 PRK06603 enoyl-(acyl carrier p 47.7 1.1E+02 0.0023 24.0 7.2 76 35-111 11-97 (260)
431 PRK11790 D-3-phosphoglycerate 47.7 93 0.002 26.7 7.2 83 36-123 154-255 (409)
432 PRK02106 choline dehydrogenase 47.6 27 0.00059 31.1 4.0 35 100-137 5-39 (560)
433 PRK06198 short chain dehydroge 47.5 1.2E+02 0.0025 23.4 7.4 76 35-111 9-95 (260)
434 TIGR02817 adh_fam_1 zinc-bindi 47.5 1.5E+02 0.0032 23.9 10.2 94 30-133 149-246 (336)
435 TIGR02441 fa_ox_alpha_mit fatt 47.5 1.4E+02 0.003 27.9 8.7 100 35-137 337-475 (737)
436 PRK05854 short chain dehydroge 47.4 90 0.002 25.3 6.9 31 35-65 17-47 (313)
437 PF00732 GMC_oxred_N: GMC oxid 47.1 17 0.00037 29.1 2.5 34 101-137 1-34 (296)
438 PRK00094 gpsA NAD(P)H-dependen 47.0 1.5E+02 0.0033 23.9 10.3 30 36-65 4-33 (325)
439 PF02384 N6_Mtase: N-6 DNA Met 47.0 37 0.00081 27.5 4.5 55 84-138 27-88 (311)
440 PRK06753 hypothetical protein; 47.0 36 0.00078 28.2 4.5 29 36-64 3-31 (373)
441 PRK05476 S-adenosyl-L-homocyst 46.9 71 0.0015 27.7 6.3 71 29-115 211-282 (425)
442 TIGR02964 xanthine_xdhC xanthi 46.7 50 0.0011 26.2 5.1 30 36-65 103-132 (246)
443 cd08263 Zn_ADH10 Alcohol dehyd 46.5 1.7E+02 0.0036 24.2 13.0 99 27-134 185-287 (367)
444 PRK05868 hypothetical protein; 46.2 38 0.00083 28.3 4.6 28 36-63 4-31 (372)
445 COG3007 Uncharacterized paraqu 46.1 1.7E+02 0.0038 24.3 8.7 96 12-110 22-141 (398)
446 PRK00045 hemA glutamyl-tRNA re 46.0 1.8E+02 0.004 25.0 8.7 70 36-114 185-256 (423)
447 PLN02477 glutamate dehydrogena 45.9 1.3E+02 0.0028 26.0 7.6 51 10-63 185-236 (410)
448 PF11814 DUF3335: Peptidase_C3 45.8 34 0.00074 26.5 3.8 27 41-67 52-78 (207)
449 TIGR00936 ahcY adenosylhomocys 45.8 39 0.00084 29.1 4.5 33 27-62 192-224 (406)
450 PF01262 AlaDh_PNT_C: Alanine 45.6 50 0.0011 24.3 4.6 29 35-63 22-50 (168)
451 PRK14804 ornithine carbamoyltr 45.6 97 0.0021 25.6 6.7 32 37-68 158-189 (311)
452 TIGR03376 glycerol3P_DH glycer 45.5 1.8E+02 0.0039 24.3 9.9 30 36-65 2-39 (342)
453 PRK08274 tricarballylate dehyd 45.4 36 0.00077 29.4 4.4 28 36-63 7-34 (466)
454 PRK08849 2-octaprenyl-3-methyl 45.2 37 0.00081 28.4 4.4 29 36-64 6-34 (384)
455 TIGR01377 soxA_mon sarcosine o 45.1 37 0.00081 28.1 4.4 29 36-64 3-31 (380)
456 PRK12769 putative oxidoreducta 44.9 78 0.0017 28.9 6.6 30 35-64 329-358 (654)
457 PRK05579 bifunctional phosphop 44.7 66 0.0014 27.6 5.8 25 41-65 213-237 (399)
458 TIGR01316 gltA glutamate synth 44.6 47 0.001 28.7 5.0 34 29-65 271-304 (449)
459 PF14871 GHL6: Hypothetical gl 44.4 68 0.0015 22.9 5.0 44 42-86 43-86 (132)
460 PRK12549 shikimate 5-dehydroge 44.4 1.3E+02 0.0028 24.3 7.3 31 36-66 130-160 (284)
461 cd01535 4RHOD_Repeat_4 Member 44.3 1.1E+02 0.0025 21.9 6.3 34 35-68 52-85 (145)
462 PRK07538 hypothetical protein; 44.2 40 0.00087 28.5 4.5 29 36-64 3-31 (413)
463 PRK06475 salicylate hydroxylas 44.1 42 0.0009 28.3 4.5 29 36-64 5-33 (400)
464 TIGR01831 fabG_rel 3-oxoacyl-( 44.0 1.4E+02 0.0031 22.6 7.3 29 36-64 2-30 (239)
465 TIGR02440 FadJ fatty oxidation 44.0 1.6E+02 0.0036 27.2 8.6 32 35-66 306-338 (699)
466 PRK05599 hypothetical protein; 43.9 1.5E+02 0.0032 22.9 7.4 29 35-64 3-31 (246)
467 PRK07121 hypothetical protein; 43.8 38 0.00083 29.5 4.4 28 36-63 23-50 (492)
468 PRK07904 short chain dehydroge 43.8 1.5E+02 0.0033 23.0 8.6 32 35-66 11-43 (253)
469 PF01370 Epimerase: NAD depend 43.7 1.4E+02 0.003 22.5 7.1 73 36-111 2-76 (236)
470 PLN02464 glycerol-3-phosphate 43.7 37 0.0008 30.9 4.3 29 36-64 74-102 (627)
471 PRK11101 glpA sn-glycerol-3-ph 43.7 38 0.00082 30.2 4.3 29 36-64 9-37 (546)
472 PRK07041 short chain dehydroge 43.6 99 0.0021 23.3 6.3 75 36-111 1-80 (230)
473 PLN03209 translocon at the inn 43.4 1.1E+02 0.0024 27.7 7.1 31 35-65 83-113 (576)
474 PLN02927 antheraxanthin epoxid 43.3 46 0.001 30.6 4.8 29 36-64 84-112 (668)
475 cd08259 Zn_ADH5 Alcohol dehydr 43.2 1.7E+02 0.0037 23.3 11.6 97 25-133 158-255 (332)
476 PF02887 PK_C: Pyruvate kinase 43.2 76 0.0016 21.7 5.0 40 93-138 11-50 (117)
477 PRK06481 fumarate reductase fl 43.0 40 0.00087 29.7 4.4 28 36-63 64-91 (506)
478 PRK12771 putative glutamate sy 43.0 46 0.001 29.7 4.8 33 28-63 135-167 (564)
479 KOG0023 Alcohol dehydrogenase, 43.0 1.4E+02 0.0031 25.0 7.1 101 26-134 178-279 (360)
480 PRK12921 2-dehydropantoate 2-r 43.0 1.7E+02 0.0038 23.4 10.7 29 36-64 3-31 (305)
481 cd05283 CAD1 Cinnamyl alcohol 42.9 1.8E+02 0.0039 23.6 12.2 94 27-133 167-262 (337)
482 PRK07494 2-octaprenyl-6-methox 42.6 38 0.00082 28.3 4.0 30 36-65 10-39 (388)
483 PRK07201 short chain dehydroge 42.6 97 0.0021 27.9 6.9 76 35-111 374-459 (657)
484 TIGR01813 flavo_cyto_c flavocy 42.5 41 0.0009 28.7 4.3 28 36-63 2-30 (439)
485 PRK13369 glycerol-3-phosphate 42.5 42 0.0009 29.5 4.4 30 36-65 9-38 (502)
486 PRK15317 alkyl hydroperoxide r 42.2 42 0.00092 29.6 4.4 29 36-64 214-242 (517)
487 TIGR01988 Ubi-OHases Ubiquinon 42.2 40 0.00088 27.8 4.1 30 36-65 2-31 (385)
488 COG1062 AdhC Zn-dependent alco 42.2 2.1E+02 0.0046 24.2 11.7 161 21-189 177-356 (366)
489 TIGR01812 sdhA_frdA_Gneg succi 42.0 40 0.00087 30.0 4.3 28 36-63 2-29 (566)
490 PF01134 GIDA: Glucose inhibit 41.9 48 0.001 28.4 4.5 28 36-63 2-29 (392)
491 PRK07792 fabG 3-ketoacyl-(acyl 41.8 1.9E+02 0.004 23.4 8.6 29 35-63 15-43 (306)
492 PRK14618 NAD(P)H-dependent gly 41.7 1.9E+02 0.0042 23.6 10.1 30 36-65 7-36 (328)
493 PRK12747 short chain dehydroge 41.6 1.2E+02 0.0027 23.3 6.6 29 35-63 7-35 (252)
494 PRK12550 shikimate 5-dehydroge 41.4 1.2E+02 0.0026 24.5 6.6 31 36-66 125-155 (272)
495 KOG3135 1,4-benzoquinone reduc 41.4 1.5E+02 0.0033 22.3 7.6 75 36-110 6-117 (203)
496 PRK04308 murD UDP-N-acetylmura 41.4 1.7E+02 0.0037 25.1 8.0 31 36-66 8-38 (445)
497 PRK07775 short chain dehydroge 41.3 1.7E+02 0.0038 22.9 8.0 30 35-64 13-42 (274)
498 PLN02494 adenosylhomocysteinas 41.2 73 0.0016 28.1 5.5 32 28-62 252-283 (477)
499 PRK07453 protochlorophyllide o 41.1 1.4E+02 0.0029 24.2 7.0 30 35-64 9-38 (322)
500 PF05185 PRMT5: PRMT5 arginine 41.0 31 0.00066 30.1 3.2 37 102-138 189-225 (448)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-52 Score=332.09 Aligned_cols=188 Identities=46% Similarity=0.780 Sum_probs=178.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++||+||+|||.|++||.+|+++|.++||.+ +||+||||+|++||++|+.+|+|+++|||++++++|++
T Consensus 34 ~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t---IVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAe 110 (300)
T COG0031 34 SFNPGGSVKDRIALYMIEDAEKRGLLKPGGT---IVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAE 110 (300)
T ss_pred hcCCCCchhHHHHHHHHHHHHHcCCCCCCCE---EEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence 4799999999999999999999999999998 99999999999999999999999999999999999888
Q ss_pred ----------------------hhcCC-eEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHH
Q 038938 74 ----------------------SKIPN-AYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 74 ----------------------~~~~~-~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
++.++ +++++||+||.|++ ||+|+++++|+||+++|||||++|++++|
T Consensus 111 vi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~L 190 (300)
T COG0031 111 VILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYL 190 (300)
T ss_pred EEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHH
Confidence 34566 77888999999998 99999989999999999999999999999
Q ss_pred HhhCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 122 KEKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 122 ~~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
|+.+|++++|+|||++|+.+..+. +++.++|++.+++|.+++.+.+|+++.|+| +|+++++|+|+++||||
T Consensus 191 k~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d-~~A~~~~r~La~~eGil 261 (300)
T COG0031 191 KERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSD-EEAIATARRLAREEGLL 261 (300)
T ss_pred HhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECH-HHHHHHHHHHHHHhCee
Confidence 999999999999999998887655 789999999999998889999999999999 99999999999999986
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.4e-48 Score=325.77 Aligned_cols=190 Identities=57% Similarity=0.883 Sum_probs=173.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|.++|.+++++|.+.+|++ .||++||||||+|+|++|+.+|++++||||++++++|++
T Consensus 146 ~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~--~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAe 223 (429)
T PLN03013 146 IMEPCCSVKDRIGYSMVTDAEQKGFISPGKS--VLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAE 223 (429)
T ss_pred cCCCccccHHHHHHHHHHHHHHcCCcCCCCc--EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCE
Confidence 5899999999999999999999999888843 299999999999999999999999999999999998877
Q ss_pred ---------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHh
Q 038938 74 ---------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKE 123 (194)
Q Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~ 123 (194)
++.+++++++||+|+.|+. |++|++++||+||+++|+|||++|++++||+
T Consensus 224 Vi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe 303 (429)
T PLN03013 224 LVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKE 303 (429)
T ss_pred EEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHh
Confidence 2335789999999998864 9999987899999999999999999999999
Q ss_pred hCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 124 KNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 124 ~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.+|+++||+|||++++.+.++++.++.++|++.+.++..++..++|+++.|+| +|+++++++|+++|||+
T Consensus 304 ~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD-~ea~~a~r~La~~eGi~ 373 (429)
T PLN03013 304 KNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISS-EEAIETAKQLALKEGLM 373 (429)
T ss_pred hCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECH-HHHHHHHHHHHHHcCCE
Confidence 99999999999999988766666778889999887787788889999999999 99999999999999985
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.4e-47 Score=314.44 Aligned_cols=190 Identities=61% Similarity=0.953 Sum_probs=171.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|++++..++++|.+.+|.+ .||++||||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 38 ~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~--~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~ 115 (322)
T PLN02565 38 MMEPCSSVKDRIGYSMITDAEEKGLIKPGES--VLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAE 115 (322)
T ss_pred ccCCccchHHHHHHHHHHHHHHcCCCCCCCc--EEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Confidence 5899999999999999999999998878843 399999999999999999999999999999999988877
Q ss_pred ---------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHh
Q 038938 74 ---------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKE 123 (194)
Q Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~ 123 (194)
.+.+++|+++||+|+.|+. |++|++++||+||+|+|+||+++|++++||+
T Consensus 116 V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~ 195 (322)
T PLN02565 116 LVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKE 195 (322)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHH
Confidence 2335889999999998763 9999987899999999999999999999999
Q ss_pred hCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 124 KNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 124 ~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.+|++|||+|||++++.+.++++.++.++|++.+..+..++..++|+++.|+| +|+++++++|++++|++
T Consensus 196 ~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d-~ea~~a~~~l~~~~gi~ 265 (322)
T PLN02565 196 QNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSS-DEAIETAKLLALKEGLL 265 (322)
T ss_pred hCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECH-HHHHHHHHHHHHHhCcE
Confidence 99999999999999988876666677789998876666666678999999999 99999999999999985
No 4
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.1e-45 Score=301.09 Aligned_cols=189 Identities=52% Similarity=0.807 Sum_probs=168.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++..++++|.+.+|.+ |+++|+||||+|+|++|+++|++|+||||+++++.|++
T Consensus 29 ~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~---vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~ 105 (298)
T TIGR01139 29 GRNPSGSVKDRIALNMIWDAEKRGLLKPGKT---IVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAE 105 (298)
T ss_pred ccCCCCcchHHHHHHHHHHHHHcCCCCCCCE---EEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCE
Confidence 5799999999999999999999998778877 99999999999999999999999999999999887755
Q ss_pred --------------------hhcCC--eEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHH
Q 038938 74 --------------------SKIPN--AYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLK 122 (194)
Q Consensus 74 --------------------~~~~~--~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~ 122 (194)
+++.+ |++++||+|+.|+. |++|+++.||+||+|+|+|||++|++.+|+
T Consensus 106 v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~ 185 (298)
T TIGR01139 106 LVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLK 185 (298)
T ss_pred EEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHH
Confidence 22333 66999999998744 899998679999999999999999999999
Q ss_pred hhCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 123 EKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 123 ~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+++|++|||+|||.+++.+...+..++.++|++.+..+..++...+|+++.|+| +|+++++++|+++|||+
T Consensus 186 ~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d-~e~~~a~~~l~~~~gi~ 256 (298)
T TIGR01139 186 EQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD-EEAIETARRLAAEEGIL 256 (298)
T ss_pred hcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH-HHHHHHHHHHHHhcCce
Confidence 999999999999999987776666667778888766666666778999999999 99999999999999985
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.2e-45 Score=303.52 Aligned_cols=189 Identities=60% Similarity=0.904 Sum_probs=169.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCC-CccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPG-KQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g-~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~------- 73 (194)
++|||||||||++.+++.+++++|.+.|| ++ ||++|+||||+|+|++|+++|++|+||||+.+++.|++
T Consensus 40 ~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~---vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA 116 (323)
T PLN00011 40 MMEPCSSVKDRIAYSMIKDAEDKGLITPGKST---LIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGA 116 (323)
T ss_pred ccCCccccchHHHHHHHHHHHHcCCCCCCCcE---EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999999998888 56 99999999999999999999999999999999877766
Q ss_pred ----------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHH
Q 038938 74 ----------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLK 122 (194)
Q Consensus 74 ----------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~ 122 (194)
.+.+++++++||+|+.|+. |++|+.++||+||+|+|+|||++|++.+||
T Consensus 117 ~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk 196 (323)
T PLN00011 117 EVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLK 196 (323)
T ss_pred EEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH
Confidence 2235789999999888764 899987689999999999999999999999
Q ss_pred hhCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 123 EKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 123 ~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+++|++|||+|||++++.+..+++..+.++|++.+..+..++...+|+++.|+| +|+++++++|++.+||+
T Consensus 197 ~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d-~e~~~a~~~l~~~~Gi~ 267 (323)
T PLN00011 197 EKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTG-EEAIETAKLLALKEGLL 267 (323)
T ss_pred hhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECH-HHHHHHHHHHHHhcCCe
Confidence 999999999999999988876666667788888765566666778999999999 99999999999999985
No 6
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=7.7e-46 Score=308.36 Aligned_cols=190 Identities=46% Similarity=0.778 Sum_probs=170.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.+++++|.+.||.+ .||++||||||+|+|++|+++|++|+||||+.++.+|+.
T Consensus 82 ~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~--~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~ 159 (368)
T PLN02556 82 MFQPTSSIKDRPALAMIEDAEKKNLITPGKT--TLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAE 159 (368)
T ss_pred ccCCccchHHHHHHHHHHHHHHcCCcCCCCC--EEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999999988853 399999999999999999999999999999999988766
Q ss_pred ---------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHh
Q 038938 74 ---------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKE 123 (194)
Q Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~ 123 (194)
.+.+++++++||+|+.|+. |++|+.+.||+||+++|||||++|++++||+
T Consensus 160 Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~ 239 (368)
T PLN02556 160 LVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKS 239 (368)
T ss_pred EEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHH
Confidence 2446889999999998863 9999866899999999999999999999999
Q ss_pred hCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 124 KNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 124 ~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.+|++|||+|||++++.+..++..++.++|++.+..+..++..++|+++.|+| +|+++++++|+++|||+
T Consensus 240 ~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd-~ea~~a~r~l~~~eGi~ 309 (368)
T PLN02556 240 KNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSS-EDAVNMARELALKEGLM 309 (368)
T ss_pred hCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECH-HHHHHHHHHHHHHcCCE
Confidence 99999999999999877766666667778887776666677788999999999 99999999999999985
No 7
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2e-45 Score=308.03 Aligned_cols=189 Identities=30% Similarity=0.467 Sum_probs=166.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|+++|.+|+++|.+.++.+ |+++||||||+++|++|+++|++|+||||++++++|++
T Consensus 76 ~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~---VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAe 152 (423)
T PLN02356 76 FLNPGGSVKDRVAVKIIEEALESGQLFPGGV---VTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGAT 152 (423)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCccCCCCE---EEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCE
Confidence 5899999999999999999999988878877 99999999999999999999999999999999988776
Q ss_pred ---h--------------------------h---------------------------------cCCeEecCCCCCCCch
Q 038938 74 ---S--------------------------K---------------------------------IPNAYLLQQHENPANP 91 (194)
Q Consensus 74 ---~--------------------------~---------------------------------~~~~~~~~~~~~~~~~ 91 (194)
. + .++++|++||+|+.|+
T Consensus 153 Vi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~ 232 (423)
T PLN02356 153 VERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANF 232 (423)
T ss_pred EEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchH
Confidence 0 0 1567899999999985
Q ss_pred H---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcccccC-------------C----C
Q 038938 92 K---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNG-------------G----K 145 (194)
Q Consensus 92 ~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~-------------~----~ 145 (194)
. |++|++++||+||+|+|+|||++|++++||+++|++|||+|||.+++.+.. + .
T Consensus 233 ~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~ 312 (423)
T PLN02356 233 RAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKN 312 (423)
T ss_pred HHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCC
Confidence 4 999998789999999999999999999999999999999999998763321 1 1
Q ss_pred CccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 146 PGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 146 ~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+.++.++|++.+..+..++..++|+++.|+| +|+++++|+|++++||+
T Consensus 313 ~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd-~ea~~a~r~L~~~~Gl~ 360 (423)
T PLN02356 313 PFDTITEGIGINRLTQNFLMAKLDGAFRGTD-KEAVEMSRYLLKNDGLF 360 (423)
T ss_pred CCCeecCcCcCCCCChhHhHHhCCcEEEECH-HHHHHHHHHHHHHCCee
Confidence 2257789998887777777788999999999 99999999999999986
No 8
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-46 Score=298.70 Aligned_cols=189 Identities=54% Similarity=0.852 Sum_probs=179.2
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---------
Q 038938 3 LLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--------- 73 (194)
Q Consensus 3 ~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--------- 73 (194)
+||+||.|||.++.|+.+|+++|.+.||.+ +|+|+||||+|+++|++|+..|+||+++||++++.+|+.
T Consensus 76 ~~p~~SvKdRia~sMi~~Ae~~G~i~pg~s--tliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaei 153 (362)
T KOG1252|consen 76 MNPGGSVKDRIAWSMIEDAEKKGLITPGKS--TLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEI 153 (362)
T ss_pred cCCcccHHHHHHHHHHHHHHHcCCccCCce--EEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEE
Confidence 699999999999999999999999999955 499999999999999999999999999999999998877
Q ss_pred -----------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHH
Q 038938 74 -----------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 74 -----------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
.+.|+.+.++||+||.|+. ||.|+.++||.||.++|||||++|+.+++
T Consensus 154 i~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRyl 233 (362)
T KOG1252|consen 154 ILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYL 233 (362)
T ss_pred EecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHH
Confidence 4678899999999999876 99999999999999999999999999999
Q ss_pred HhhCCCceEEEEecCCcccccCCCCcc--ccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 122 KEKNLEMKVYGIESVESAVLNGGKPGL--HLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 122 ~~~~~~~~vigve~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
|+++|+++||+|||.+|..+....+++ +.++|+|.++.|..++...+|+++.+.+ +|++.+.|+|+.+|||+
T Consensus 234 ke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~-d~A~~~Ar~La~eeGll 307 (362)
T KOG1252|consen 234 KEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSS-DEAIEMARRLALEEGLL 307 (362)
T ss_pred HHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCC-HHHHHHHHHHHHhhCee
Confidence 999999999999999998888777777 8899999999999999999999999999 99999999999999986
No 9
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=4.8e-45 Score=297.36 Aligned_cols=189 Identities=49% Similarity=0.822 Sum_probs=168.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|++.+++..++++|.+.+|++ |+++|+||||+|+|++|+++|++|+||||++.++.|++
T Consensus 30 ~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~---vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~ 106 (299)
T TIGR01136 30 GRNPSGSVKDRIALSMIEDAEKRGLLKPGDT---IIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAE 106 (299)
T ss_pred ccCCCCCccHHHHHHHHHHHHHcCCCCCCCE---EEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999998778877 99999999999999999999999999999999887765
Q ss_pred --------------------hhc-CCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHh
Q 038938 74 --------------------SKI-PNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKE 123 (194)
Q Consensus 74 --------------------~~~-~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~ 123 (194)
+++ .+|++++||+|+.++. |++|++++||+||+|+|+||+++|++.+|++
T Consensus 107 v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~ 186 (299)
T TIGR01136 107 LILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKE 186 (299)
T ss_pred EEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHH
Confidence 223 4688999999988743 8999987799999999999999999999999
Q ss_pred hCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 124 KNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 124 ~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.+|.+|||+|||++++.+..++...+.+.+++.+..+..+...++|+++.|+| +|+++++++|++.|||+
T Consensus 187 ~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d-~e~~~a~~~l~~~~gi~ 256 (299)
T TIGR01136 187 QNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSD-EDAIETARRLAREEGIL 256 (299)
T ss_pred hCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECH-HHHHHHHHHHHHHhCce
Confidence 99999999999999988876655555677777666666667788999999999 99999999999999985
No 10
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1e-44 Score=294.63 Aligned_cols=182 Identities=35% Similarity=0.577 Sum_probs=158.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+++++|.+.+|++ ||++||||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 35 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~---vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~ 111 (296)
T PRK11761 35 GNNPAGSVKDRPALSMIVQAEKRGEIKPGDT---LIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAE 111 (296)
T ss_pred ccCCCCCchhHHHHHHHHHHHHcCCCCCCCE---EEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 5899999999999999999999998888877 99999999999999999999999999999999887766
Q ss_pred --------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhh
Q 038938 74 --------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEK 124 (194)
Q Consensus 74 --------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~ 124 (194)
+++.++++++||+|+.++. |++|+++++|+||+|+|+||+++|++++||++
T Consensus 112 v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~ 191 (296)
T PRK11761 112 LILVPKEQGMEGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQ 191 (296)
T ss_pred EEEeCCCCChHHHHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHh
Confidence 2345788999999988764 99999877999999999999999999999999
Q ss_pred CCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 125 NLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 125 ~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|++|||+|||++++.+.+ +.+......+.+++...+|+++.|+| +|+++++++|++.+||+
T Consensus 192 ~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d-~e~~~a~~~l~~~~gi~ 253 (296)
T PRK11761 192 NPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQ-QEAENTMRRLAREEGIF 253 (296)
T ss_pred CCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECH-HHHHHHHHHHHHHhCce
Confidence 9999999999998765532 11221222334456778999999999 99999999999999985
No 11
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=4.1e-44 Score=290.46 Aligned_cols=182 Identities=35% Similarity=0.609 Sum_probs=157.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|..++++|.+.+|++ ||++||||||+|+|++|+++|++|+||||++.++.|+.
T Consensus 31 ~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~---vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~ 107 (290)
T TIGR01138 31 GNNPAGSVKDRPALSMIVEAEKRGEIKPGDV---LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAE 107 (290)
T ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCCCE---EEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCE
Confidence 5899999999999999999999998888877 99999999999999999999999999999998887766
Q ss_pred --------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhh
Q 038938 74 --------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEK 124 (194)
Q Consensus 74 --------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~ 124 (194)
+++.+.+|++||+|+.++. |++|++++||+||+|+|+|||++|++.+||++
T Consensus 108 v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~ 187 (290)
T TIGR01138 108 LILVTKEEGMEGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQ 187 (290)
T ss_pred EEEeCCCCChHHHHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHh
Confidence 2334456889999988765 89999878999999999999999999999999
Q ss_pred CCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 125 NLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 125 ~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|++|||+|||.+++.+.+ +.+++....+..++..++|+++.|+| +|+++++++|+++|||+
T Consensus 188 ~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d-~e~~~a~~~l~~~~gi~ 249 (290)
T TIGR01138 188 NPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ-RDAENTMRELAVREGIF 249 (290)
T ss_pred CCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH-HHHHHHHHHHHHHhCce
Confidence 9999999999998865432 12233333344456677999999999 99999999999999985
No 12
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.4e-43 Score=290.93 Aligned_cols=189 Identities=35% Similarity=0.535 Sum_probs=164.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+++++|.+.+|++ ||++|+||||+|+|++|+++|++|+||||+.+++.|++
T Consensus 36 ~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~---vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~ 112 (330)
T PRK10717 36 FLNPGGSVKDRAALNIIWDAEKRGLLKPGGT---IVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAE 112 (330)
T ss_pred ccCCCCCchHHHHHHHHHHHHHcCCCCCCCE---EEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999998888877 99999999999999999999999999999999877655
Q ss_pred ----------------------hhc------CCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHH
Q 038938 74 ----------------------SKI------PNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITG 116 (194)
Q Consensus 74 ----------------------~~~------~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~G 116 (194)
+++ .++++++||+||.++. |++|++++||+||+|+|+||+++|
T Consensus 113 V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~G 192 (330)
T PRK10717 113 LVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAG 192 (330)
T ss_pred EEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHH
Confidence 001 3788999999998753 999998789999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCcccccC---C---CCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHh
Q 038938 117 AEKFLKEKNLEMKVYGIESVESAVLNG---G---KPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALK 190 (194)
Q Consensus 117 i~~~l~~~~~~~~vigve~~~~~~~~~---~---~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~ 190 (194)
++.+|++++|+++||+|||++++.... + ....+.++|++.+..+..+....+|+++.|+| +|+++++++|++.
T Consensus 193 i~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d-~e~~~a~~~l~~~ 271 (330)
T PRK10717 193 VSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPD-EEALSTAYRLLEE 271 (330)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECH-HHHHHHHHHHHHh
Confidence 999999999999999999999853321 1 13446788888776555566667899999999 9999999999999
Q ss_pred cCCC
Q 038938 191 GGLL 194 (194)
Q Consensus 191 eGi~ 194 (194)
|||+
T Consensus 272 ~gi~ 275 (330)
T PRK10717 272 EGLC 275 (330)
T ss_pred cCCe
Confidence 9985
No 13
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=291.41 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=162.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++||+||||.|||+|.+.++.+++...+| ||++|+||||+++|++|+++|++++||||.++|..|.+
T Consensus 48 ~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~g-----ViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~Gae 122 (347)
T COG1171 48 NLQPVGSFKIRGAYNKLSSLSEEEERAAG-----VIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAE 122 (347)
T ss_pred cCcccccchhhhHHHHHHhcChhhhhcCc-----eEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCE
Confidence 58999999999999999987644333344 99999999999999999999999999999999999888
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.|++++++|++|+.++ |++|++..||+||||+|+||+++|++.++|.+.|+
T Consensus 123 Vil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~ 202 (347)
T COG1171 123 VILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPE 202 (347)
T ss_pred EEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCC
Confidence 6788999999999998776 89999866899999999999999999999999999
Q ss_pred ceEEEEecCCcccccCC-----C-----CccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNGG-----K-----PGLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~-----~-----~~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++||||||++++++..+ . ...+.++|+++..+. ..+.++++|+++.|+| +|+.++|++|++.++++
T Consensus 203 ~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e-~ei~~am~~l~~~~~iI 281 (347)
T COG1171 203 IKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDE-DEICAAMRDLFERTKII 281 (347)
T ss_pred CeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECH-HHHHHHHHHHHhcCCee
Confidence 99999999999887642 1 134567888776532 2245789999999999 99999999999988763
No 14
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.8e-43 Score=285.22 Aligned_cols=189 Identities=47% Similarity=0.781 Sum_probs=167.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|++.++|..++++|.+++|.+ |+++|+||||+|+|++|+++|++|+||||+++++.+++
T Consensus 25 ~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~---vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~ 101 (291)
T cd01561 25 FFNPGGSVKDRIALYMIEDAEKRGLLKPGTT---IIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAE 101 (291)
T ss_pred ccCCCCcchHHHHHHHHHHHHHcCCCCCCCE---EEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999987767767 99999999999999999999999999999998776555
Q ss_pred ----------------------h-hcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHHH
Q 038938 74 ----------------------S-KIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 74 ----------------------~-~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
+ +.+++++++||+||.+++ |++|+++.||+||+|+|+|||++|++.+|
T Consensus 102 v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~ 181 (291)
T cd01561 102 VILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYL 181 (291)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHH
Confidence 2 224799999999998765 88999878999999999999999999999
Q ss_pred HhhCCCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 122 KEKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 122 ~~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++++|+++||+|||++++.+.......+.++|++.+..+..+...++|+++.|+| +|+++++++|++.|||+
T Consensus 182 ~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d-~e~~~a~~~l~~~~gi~ 253 (291)
T cd01561 182 KEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSD-EEAFAMARRLAREEGLL 253 (291)
T ss_pred HHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECH-HHHHHHHHHHHHHhCee
Confidence 9999999999999999987744445567788988876666666778999999999 99999999999999985
No 15
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2e-42 Score=296.48 Aligned_cols=189 Identities=39% Similarity=0.567 Sum_probs=163.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|.+++.+++++|.+.+|++ ||++||||||+|+|++|+++|++|+||||++++++|+.
T Consensus 34 ~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~---vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 110 (454)
T TIGR01137 34 FFNPGGSVKDRIALRMIEDAEASGRLKPGDT---IIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAE 110 (454)
T ss_pred hcCCCcchHHHHHHHHHHHHHHcCCCCCCCE---EEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCE
Confidence 5799999999999999999999998888877 99999999999999999999999999999999877765
Q ss_pred ------------------------hhcCCeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHHHHHHH
Q 038938 74 ------------------------SKIPNAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTITGAEKF 120 (194)
Q Consensus 74 ------------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~ 120 (194)
.+.+++++++||+|+.|+. |++|++++||+||+|+|||||++|++.+
T Consensus 111 v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~ 190 (454)
T TIGR01137 111 IVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARY 190 (454)
T ss_pred EEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHH
Confidence 1124678899999998763 9999987899999999999999999999
Q ss_pred HHhhCCCceEEEEecCCcccccCC-----CCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 121 LKEKNLEMKVYGIESVESAVLNGG-----KPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 121 l~~~~~~~~vigve~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
|++.+|+++||+|||++++..... ...++.++|++.+..+..++...+|+++.|+| +|+++++++|++.|||+
T Consensus 191 ~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~-~e~~~a~~~l~~~~gi~ 268 (454)
T TIGR01137 191 LKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDD-KESFKMARRLIKEEGLL 268 (454)
T ss_pred HHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECH-HHHHHHHHHHHHHhCcc
Confidence 999999999999999988633221 11235677887665566667788999999999 99999999999999985
No 16
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.7e-42 Score=283.94 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=159.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.+++++|. .++++ ||++|+||||+|+|++|+++|++|+||||+.+++.|.+
T Consensus 24 ~~nptGS~K~R~a~~~l~~a~~~g~-~~~~~---vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~ 99 (316)
T cd06448 24 NLQPSGSFKIRGIGHLCQKSAKQGL-NECVH---VVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGAT 99 (316)
T ss_pred cCCCcCChHHHHHHHHHHHHHHhhc-ccCCe---EEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999885 34556 99999999999999999999999999999999887766
Q ss_pred -------------------hhc-CCeEecCCCCCCCchH--------HHHHcCC--CCCEEEEecCCchhHHHHHHHHHh
Q 038938 74 -------------------SKI-PNAYLLQQHENPANPK--------IWKDSGG--KFDALVAGIRTGGTITGAEKFLKE 123 (194)
Q Consensus 74 -------------------~~~-~~~~~~~~~~~~~~~~--------i~~q~~~--~~d~vv~~vG~GGt~~Gi~~~l~~ 123 (194)
+++ ++++|++||+||.+++ |++|+++ .||+||+|+|+|||++|++++|++
T Consensus 100 v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~ 179 (316)
T cd06448 100 VVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLER 179 (316)
T ss_pred EEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHh
Confidence 233 3789999999998766 9999986 699999999999999999999999
Q ss_pred hC-CCceEEEEecCCcccccCC----C-----CccccccccCCCCCccc-cc--cccCCcEEEeCCHHHHHHHHHHHHHh
Q 038938 124 KN-LEMKVYGIESVESAVLNGG----K-----PGLHLIQGIGIGIIPTV-LD--IKMLDEVKTVLLCHVVTETTKRLALK 190 (194)
Q Consensus 124 ~~-~~~~vigve~~~~~~~~~~----~-----~~~~~~~g~~~~~~~~~-~~--~~~vd~~~~V~d~~e~~~a~~~la~~ 190 (194)
.+ |+++||+|||++++.+..+ + ...+.++|++.+..+.. ++ ...+|+++.|+| +|+++++++|+++
T Consensus 180 ~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd-~e~~~a~~~l~~~ 258 (316)
T cd06448 180 NGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSD-RDAVQACLRFADD 258 (316)
T ss_pred cCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECH-HHHHHHHHHHHHH
Confidence 96 9999999999998766431 1 12345668876654432 22 356899999999 9999999999999
Q ss_pred cCCC
Q 038938 191 GGLL 194 (194)
Q Consensus 191 eGi~ 194 (194)
|||+
T Consensus 259 ~gi~ 262 (316)
T cd06448 259 ERIL 262 (316)
T ss_pred cCce
Confidence 9985
No 17
>PLN02970 serine racemase
Probab=100.00 E-value=3.3e-42 Score=283.70 Aligned_cols=185 Identities=18% Similarity=0.169 Sum_probs=154.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.+++. .++ ||++|+||||+|+|++|+++|++|+||||++++++|+.
T Consensus 50 ~~nptGSfKdRga~~~i~~~~~~~~---~~~---vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 123 (328)
T PLN02970 50 CFQKGGAFKFRGACNAIFSLSDDQA---EKG---VVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGI 123 (328)
T ss_pred CCCCCCCcHHHHHHHHHHHhhHhhc---CCe---EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 5799999999999999999886543 134 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||+|+.+++ |++|++ .||+||+|+|+||+++|++++||+++|+
T Consensus 124 Vi~~~~~~~~~~~~a~~la~~~g~~~~~~~~n~~~~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~ 202 (328)
T PLN02970 124 ITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPS 202 (328)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCC
Confidence 3457899999999988765 999997 6999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CC-----CccccccccCCCCCc--cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGIIP--TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~~~--~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||+|||++++.+.. ++ ..++..+|++..... ....++.+|+++.|+| +|+++++++|++.|||+
T Consensus 203 ~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d-~e~~~a~~~la~~~gi~ 279 (328)
T PLN02970 203 IKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDD-KEIIEAMKLCYERLKVV 279 (328)
T ss_pred CEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECH-HHHHHHHHHHHHhcCcE
Confidence 9999999999876542 11 123345555543111 1123567899999999 99999999999999985
No 18
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=5.2e-42 Score=295.08 Aligned_cols=186 Identities=22% Similarity=0.262 Sum_probs=157.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|++++..+.++. ..+| ||++|+||||+++|++|+++|++|+||||+++|..|..
T Consensus 60 ~lqptGSfK~RGA~n~i~~l~~~~-~~~G-----VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAe 133 (521)
T PRK12483 60 DLQPVFSFKIRGAYNKMARLPAEQ-LARG-----VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGE 133 (521)
T ss_pred CCCCCCchHHHHHHHHHHHhHHHH-hcCc-----EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 589999999999999999876542 2344 99999999999999999999999999999999988776
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+|+.+++ |++|+++.||+||+|+|+||+++|++.++|+.+|+
T Consensus 134 Vil~g~~~d~a~~~A~~la~e~g~~~v~pfdd~~viaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~ 213 (521)
T PRK12483 134 VVLHGESFPDALAHALKLAEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPE 213 (521)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCeeeCCCCChHHHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCC
Confidence 4456889999999998877 99999867999999999999999999999999999
Q ss_pred ceEEEEecCCcccccCC----C-----CccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNGG----K-----PGLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~----~-----~~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++.+..+ + ...+.++|++..... ..+.++++|++++|+| +|+.+++++|++.+|++
T Consensus 214 vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse-~ei~~ai~~l~~~~~i~ 291 (521)
T PRK12483 214 IKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVST-DELCAAIKDIYDDTRSI 291 (521)
T ss_pred CEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHHhCCcE
Confidence 99999999999876532 1 123456677654321 1123678999999999 99999999999999874
No 19
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.9e-42 Score=290.20 Aligned_cols=185 Identities=18% Similarity=0.245 Sum_probs=156.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|.+++.++.+.+. . .+ ||++|+||||+++|++|+++|++|+||||+++|..|.+
T Consensus 43 ~lqptGSfK~RgA~n~i~~l~~~~~-~--~g---VV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~ 116 (403)
T PRK08526 43 NLQITGAYKIRGAYNKIANLSEEQK-Q--HG---VIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAE 116 (403)
T ss_pred CCCCCCCCHHHHHHHHHHhccHhhc-C--CE---EEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCE
Confidence 5899999999999999998886543 2 23 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||+|+.++. |++|++ .||+||+|+|+||+++|++.++|+.+|+
T Consensus 117 Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p~~~~~~i~G~gtia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~ 195 (403)
T PRK08526 117 VILKGDNYDEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPN 195 (403)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEeeCCCCCHHHHhhhHHHHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCC
Confidence 4557899999999987665 899997 6999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CC-----CccccccccCCCCC-ccccc--cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGII-PTVLD--IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~~-~~~~~--~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++.+.. ++ ...+..+|++.... +..++ ..++|++++|+| +|+.+++++|+++||++
T Consensus 196 ~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d-~ei~~A~~~l~~~~gi~ 273 (403)
T PRK08526 196 IKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDD-EEIANAILFLLEKQKIV 273 (403)
T ss_pred CEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHHhcCcE
Confidence 9999999999986632 11 23355677765432 22232 478999999999 99999999999999985
No 20
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.6e-42 Score=291.06 Aligned_cols=186 Identities=22% Similarity=0.275 Sum_probs=156.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|.+++.++.+ +... .. ||++|+||||+++|++|+++|++|+||||+++|+.|.+
T Consensus 48 ~~~ptGSfK~RgA~~~i~~l~~-~~~~--~~---Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~ 121 (420)
T PRK08639 48 DLQPVRSYKLRGAYNAISQLSD-EELA--AG---VVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE 121 (420)
T ss_pred CCCCCCCcHHHHHHHHHHhCCH-HhhC--CE---EEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 5799999999999999998433 2222 24 99999999999999999999999999999999887765
Q ss_pred ---------------------hhcCCeEecCCCCCCCchH--------HHHHcCCC--CCEEEEecCCchhHHHHHHHHH
Q 038938 74 ---------------------SKIPNAYLLQQHENPANPK--------IWKDSGGK--FDALVAGIRTGGTITGAEKFLK 122 (194)
Q Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~--~d~vv~~vG~GGt~~Gi~~~l~ 122 (194)
++++|++|++||+|+.+++ |++|+++. ||+||+|+|+||+++|++.++|
T Consensus 122 vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k 201 (420)
T PRK08639 122 FVEIVLVGDTFDDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLK 201 (420)
T ss_pred eeEEEEeCcCHHHHHHHHHHHHHhcCCcccCCCCChhHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHH
Confidence 3456899999999998776 89999865 9999999999999999999999
Q ss_pred hhCCCceEEEEecCCcccccC----CC-----CccccccccCCCCCcc-c--cccccCCcEEEeCCHHHHHHHHHHHHHh
Q 038938 123 EKNLEMKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGIIPT-V--LDIKMLDEVKTVLLCHVVTETTKRLALK 190 (194)
Q Consensus 123 ~~~~~~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~~~~-~--~~~~~vd~~~~V~d~~e~~~a~~~la~~ 190 (194)
+.+|++|||||||++++.+.. +. ...+.++|++...... . +.++++|++++|+| +|+++++++|++.
T Consensus 202 ~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d-~ei~~a~~~l~~~ 280 (420)
T PRK08639 202 ERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPE-GAVCTTILELYNK 280 (420)
T ss_pred HhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHh
Confidence 999999999999999887642 11 1235567777554322 1 23578999999999 9999999999999
Q ss_pred cCCC
Q 038938 191 GGLL 194 (194)
Q Consensus 191 eGi~ 194 (194)
+||+
T Consensus 281 ~gi~ 284 (420)
T PRK08639 281 EGIV 284 (420)
T ss_pred cCce
Confidence 9985
No 21
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=4.4e-42 Score=288.34 Aligned_cols=185 Identities=20% Similarity=0.236 Sum_probs=156.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|.+++.++.+++.. .+ ||++|+||||+++|++|+++|++|+||||++++..|.+
T Consensus 23 ~~~ptgS~K~R~a~~~i~~~~~~~~~---~~---vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 96 (380)
T TIGR01127 23 NLQKTGSFKIRGALNKIANLSEDQRQ---RG---VVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAE 96 (380)
T ss_pred CCCCCCCcHHHHHHHHHHhcchhccC---CE---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCE
Confidence 57999999999999999999887643 24 99999999999999999999999999999999988776
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||+|+.+++ |++|++ .||+||+|+|+|||++|++.+||+++|+
T Consensus 97 V~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~ 175 (380)
T TIGR01127 97 VILHGDDYDEAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIP-DVDTVIVPVGGGGLISGVASAAKQINPN 175 (380)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCC-CCCEEEEEeChHHHHHHHHHHHHHhCCC
Confidence 3457889999999987765 899997 7999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CC-----CccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++.+.. ++ ...+..+|++..... ..+..+++|++++|+| +|+.+++++|++++|++
T Consensus 176 ~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d-~e~~~a~~~l~~~~gi~ 253 (380)
T TIGR01127 176 VKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDE-EEIANAIYLLLERHKIL 253 (380)
T ss_pred CEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHHhcCeE
Confidence 9999999999876542 22 123445666643321 1234578999999999 99999999999999975
No 22
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=4.7e-42 Score=289.83 Aligned_cols=186 Identities=22% Similarity=0.242 Sum_probs=156.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|++++..+.+. ...+| ||++|+||||+++|++|+++|++|+||||+++++.|..
T Consensus 39 ~~~ptGSfK~RgA~~~i~~l~~~-~~~~g-----vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 112 (409)
T TIGR02079 39 DLQPVRSYKIRGAYNFLKQLSDA-QLAKG-----VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGE 112 (409)
T ss_pred CCCCCCCcHHHHHHHHHHhCCHH-hhCCE-----EEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCC
Confidence 57999999999999999874432 22233 99999999999999999999999999999999987765
Q ss_pred ---------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhh
Q 038938 74 ---------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEK 124 (194)
Q Consensus 74 ---------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~ 124 (194)
+++.+++|++||+||.+++ |++|++++||+||+|+|+||+++|++.+||++
T Consensus 113 vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~ 192 (409)
T TIGR02079 113 FIEIILVGDTFDQCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGT 192 (409)
T ss_pred eeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCHhHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHh
Confidence 3456889999999998766 89999867999999999999999999999999
Q ss_pred CCCceEEEEecCCcccccC----CC-----CccccccccCCCCCccc---cccccCCcEEEeCCHHHHHHHHHHHHHhcC
Q 038938 125 NLEMKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGIIPTV---LDIKMLDEVKTVLLCHVVTETTKRLALKGG 192 (194)
Q Consensus 125 ~~~~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~~~~~---~~~~~vd~~~~V~d~~e~~~a~~~la~~eG 192 (194)
+|++|||||||++++.+.. ++ ..++.++|++....+.. +...++|+++.|+| +|+++++++|++++|
T Consensus 193 ~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d-~e~~~a~~~l~~~~g 271 (409)
T TIGR02079 193 SPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPE-GAVCTTILDLYNLEG 271 (409)
T ss_pred CCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECH-HHHHHHHHHHHHhcC
Confidence 9999999999999887643 22 12355677776554321 23568999999999 999999999999999
Q ss_pred CC
Q 038938 193 LL 194 (194)
Q Consensus 193 i~ 194 (194)
++
T Consensus 272 i~ 273 (409)
T TIGR02079 272 IV 273 (409)
T ss_pred ce
Confidence 85
No 23
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.2e-41 Score=294.74 Aligned_cols=186 Identities=18% Similarity=0.249 Sum_probs=157.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|++++.++.++ ...+| ||++|+||||+++|++|+++|++|+||||+++|..|.+
T Consensus 132 ~lqptGSFK~RGA~n~I~~L~~e-~~~~G-----VV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAe 205 (591)
T PLN02550 132 DLQPVFSFKLRGAYNMMAKLPKE-QLDKG-----VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGAT 205 (591)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHh-cCCCC-----EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 57999999999999999988654 33455 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|+++|+|+.+++ |++|+++.+|+||+|+|+||+++|++.++|+++|+
T Consensus 206 Vvl~g~~~dea~~~A~~la~e~g~~fi~pfddp~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~ 285 (591)
T PLN02550 206 VVLVGDSYDEAQAYAKQRALEEGRTFIPPFDHPDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPE 285 (591)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcCCEEECCCCChHHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCC
Confidence 3557889999999998876 89999867999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CCC-----ccccccccCCCCCcc---ccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GKP-----GLHLIQGIGIGIIPT---VLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~~-----~~~~~~g~~~~~~~~---~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++.+.. ++. ..+..+|+....... .+.++++|++|.|+| +|+.+++++|++.+|++
T Consensus 286 vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd-~eI~~Ai~~l~e~~giv 363 (591)
T PLN02550 286 VKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSR-DAICASIKDMFEEKRSI 363 (591)
T ss_pred CEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECH-HHHHHHHHHHHHHCCCE
Confidence 9999999999887742 221 124556666543211 123678999999999 99999999999999974
No 24
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5.4e-42 Score=289.59 Aligned_cols=185 Identities=22% Similarity=0.259 Sum_probs=157.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|++++..+.+.+. .+| ||++|+||||+|+|++|+++|++|+||||++++..|.+
T Consensus 48 ~~nptGSfK~Rga~~~i~~~~~~~~-~~g-----vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~ 121 (406)
T PRK06382 48 NFQKTGSFKSRGAVFKFSKLSEDEL-RNG-----VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAH 121 (406)
T ss_pred CCCCCCCCHHHHHHHHHHhcchhcc-CCe-----EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCE
Confidence 5799999999999999998876542 333 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+|+.+++ |++|++ .||+||+|+|+||+++|++.++|+++|+
T Consensus 122 Vv~~~~~~~~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~ 200 (406)
T PRK06382 122 VILTGRDYDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPN 200 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCC
Confidence 3456889999999998766 899997 7999999999999999999999999999
Q ss_pred ceEEEEecCCccccc----CCC-----CccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLN----GGK-----PGLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~----~~~-----~~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++.+. .++ ...+.++|++.+... ..+.++++|+++.|+| +|+++++++|+++|||+
T Consensus 201 ~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d-~ei~~a~~~l~~~~gi~ 278 (406)
T PRK06382 201 VKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTE-ESVSKAIYKLFEREKIV 278 (406)
T ss_pred CEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECH-HHHHHHHHHHHHHcCce
Confidence 999999999998653 221 234567787765422 2234678999999999 99999999999999985
No 25
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=3.3e-41 Score=282.49 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=155.9
Q ss_pred CCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCCc--------------cceEEEeCCChHHHHHHHHHHHcCCcEEE
Q 038938 2 GLLD-HPSTPSRIACSMIKD-----AEDKGSISPGKQ--------------YNVLVEITSANAGIGLASIASSRGYKIIV 61 (194)
Q Consensus 2 ~~~p-tgS~K~R~a~~~~~~-----a~~~g~~~~g~~--------------~~~vv~aSsGN~g~a~A~~a~~~Gl~~~i 61 (194)
++|| |||||||++.++|.. +++.|.+.||.+ .+.||++||||||+|+|++|+++|++|+|
T Consensus 83 ~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~I 162 (404)
T cd06447 83 SHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTV 162 (404)
T ss_pred CCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEE
Confidence 4799 999999999999974 778888877750 12399999999999999999999999999
Q ss_pred EeCCCCCHHHHh--------------------------h-hcCCeEecCCCCCCCchH--------HHHHcCC---C---
Q 038938 62 KMPNTYSIQRRM--------------------------S-KIPNAYLLQQHENPANPK--------IWKDSGG---K--- 100 (194)
Q Consensus 62 v~p~~~~~~k~~--------------------------~-~~~~~~~~~~~~~~~~~~--------i~~q~~~---~--- 100 (194)
|||++++++|++ + +.++++++++++++...+ |++|+++ +
T Consensus 163 vvP~~~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~ 242 (404)
T cd06447 163 HMSADAKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAADPMCYFVDDENSRDLFLGYAVAASRLKAQLAELGIKVDA 242 (404)
T ss_pred EECCCCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCeEeCCCCCchhHHhhHHHHHHHHHHHhhhccCcccc
Confidence 999999999877 2 234678899876665544 9999862 3
Q ss_pred --CCEEEEecCCchhHHHHHHHHHhh-CCCceEEEEecCCcccccC----CC-----------CccccccccCCCCCccc
Q 038938 101 --FDALVAGIRTGGTITGAEKFLKEK-NLEMKVYGIESVESAVLNG----GK-----------PGLHLIQGIGIGIIPTV 162 (194)
Q Consensus 101 --~d~vv~~vG~GGt~~Gi~~~l~~~-~~~~~vigve~~~~~~~~~----~~-----------~~~~~~~g~~~~~~~~~ 162 (194)
||+||+|+|+||+++|++++||++ .|+++||+|||++++.+.. +. ...+.++|++++.....
T Consensus 243 ~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~ 322 (404)
T cd06447 243 EHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGL 322 (404)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchh
Confidence 568999999999999999999997 7899999999999875521 11 12355677776653322
Q ss_pred ---cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 163 ---LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 163 ---~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+.+.++|+++.|+| +|+++++++|++++||+
T Consensus 323 ~~~~~~~~vd~~v~Vsd-~ei~~a~r~La~~~gi~ 356 (404)
T cd06447 323 VGKLMEPLLSGIYTVED-DELYRLLAMLKDSENIE 356 (404)
T ss_pred HHHHHHHhCCcEEEECH-HHHHHHHHHHHHHcCcE
Confidence 22567999999999 99999999999999985
No 26
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=2e-41 Score=279.13 Aligned_cols=181 Identities=22% Similarity=0.257 Sum_probs=151.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.+++.. . . ||++|+||||+|+|++|+++|++|+||||+++++.|++
T Consensus 56 ~~nptGSfK~RgA~~~l~~a~~~~~~-~--~---VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAe 129 (349)
T PRK08813 56 NLQRTGSYKVRGALNALLAGLERGDE-R--P---VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGAT 129 (349)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHcCCC-C--e---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 57999999999999999999998753 2 3 99999999999999999999999999999999988877
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|+++|+|+.+++ |++| .||+||+|+|+||+++|++.+||+ ++
T Consensus 130 Vv~~g~~~~~a~~~a~~la~~~g~~~v~~~~np~~i~G~~Tig~EI~e~---~pD~VvvpvGgGGliaGia~~lk~--~~ 204 (349)
T PRK08813 130 VRQHGNSYDEAYAFARELADQNGYRFLSAFDDPDVIAGQGTVGIELAAH---APDVVIVPIGGGGLASGVALALKS--QG 204 (349)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEcCccCChHHHHHHHHHHHHHHcC---CCCEEEEEeCccHHHHHHHHHHhc--CC
Confidence 4456899999999998877 5554 589999999999999999999995 57
Q ss_pred ceEEEEecCCcccccC---CC-----CccccccccCCCC---CccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG---GK-----PGLHLIQGIGIGI---IPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~---~~-----~~~~~~~g~~~~~---~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++||||||++++.+.. ++ ...+.++|++... .+..+..+++|+++.|+| +|+++++++|++++|++
T Consensus 205 ~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd-~ei~~a~~~l~~~~gl~ 281 (349)
T PRK08813 205 VRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVRE-AELRETLVRLALEEHVI 281 (349)
T ss_pred CEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECH-HHHHHHHHHHHHHcCcE
Confidence 9999999999875432 11 2245677776543 222234678999999999 99999999999999985
No 27
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2e-41 Score=286.31 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=155.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||+|.+++.++.+++. +.+ ||++|+||||+++|++|+++|++|+||||++++..|++
T Consensus 45 ~~nptGS~K~R~a~~~i~~~~~~~~---~~~---vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 118 (404)
T PRK08198 45 NLQRTGSFKIRGAYNKIASLSEEER---ARG---VVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAE 118 (404)
T ss_pred CCCCCCCCHHHHHHHHHHhccHhhc---CCE---EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 5799999999999999999886542 335 99999999999999999999999999999999988876
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+|+.+++ |++|++ ++|+||+|+|+|||++|++.+||+.+|+
T Consensus 119 Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~ 197 (404)
T PRK08198 119 VVLHGDVYDEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALRPE 197 (404)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhCCC
Confidence 4557899999999998766 899997 6999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CCC-----ccccccccCCCCC---ccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GKP-----GLHLIQGIGIGII---PTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~~-----~~~~~~g~~~~~~---~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++.+.. +++ ..+..+|++.... +..+.+.++|+++.|+| +|+++++++|++++|++
T Consensus 198 ~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d-~e~~~a~~~l~~~~g~~ 275 (404)
T PRK08198 198 VRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSD-EEIARAILLLLERAKLV 275 (404)
T ss_pred CEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHHhcCeE
Confidence 9999999999876642 221 2233455543321 12234678999999999 99999999999999875
No 28
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=3.2e-41 Score=278.41 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=156.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+++++|.+. ++ ||++|+||||+++|++|+++|++|+||||++++++|++
T Consensus 46 ~~nptGS~K~R~a~~~v~~a~~~g~~~--~~---vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~ 120 (338)
T PRK06608 46 SLQKTGAFKVRGVLNHLLELKEQGKLP--DK---IVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGE 120 (338)
T ss_pred CCCCCCCcHHHHHHHHHHHhhhhcCcC--Ce---EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 579999999999999999999988643 35 99999999999999999999999999999999988766
Q ss_pred ----------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCCce
Q 038938 74 ----------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMK 129 (194)
Q Consensus 74 ----------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~ 129 (194)
++.+++|+++||+|+.+++ |++|++++||+||+|+|+|||++|++.++|+.+|+++
T Consensus 121 V~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~ 200 (338)
T PRK06608 121 VILTNTRQEAEEKAKEDEEQGFYYIHPSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSL 200 (338)
T ss_pred EEEECCHHHHHHHHHHHHhCCCEEcCCCCCHHHhccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCE
Confidence 2346789999999987654 8999987899999999999999999999999999999
Q ss_pred EEEEecCCccccc----CCC------CccccccccCCCCCccc-cc-cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 130 VYGIESVESAVLN----GGK------PGLHLIQGIGIGIIPTV-LD-IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 130 vigve~~~~~~~~----~~~------~~~~~~~g~~~~~~~~~-~~-~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
||+|||++++.+. .++ ...+..+|++.+..... +. ...+|+++.|+| +|+++++++|++.||++
T Consensus 201 vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd-~e~~~a~~~l~~~~gi~ 276 (338)
T PRK06608 201 LIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEE-YEIYYWTAWLTHLLKVI 276 (338)
T ss_pred EEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECH-HHHHHHHHHHHHHcCcE
Confidence 9999999987442 221 12345667765432221 22 134799999999 99999999999999985
No 29
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-41 Score=286.96 Aligned_cols=185 Identities=16% Similarity=0.213 Sum_probs=157.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.++.. ... ||++|+||||+|+|++|+++|++|+||||+.+++.|+.
T Consensus 46 ~~nptGS~KdR~a~~~i~~~~~~~~---~~~---vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 119 (403)
T PRK07334 46 NLQFTASFKERGALNKLLLLTEEER---ARG---VIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAE 119 (403)
T ss_pred cCCCCCCchHHHHHHHHHhcCHHHh---CCc---EEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 5799999999999999998765432 123 99999999999999999999999999999999988776
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||+|+.+++ |++|++ .||+||+|+|+|||++|++++||+++|+
T Consensus 120 v~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~ 198 (403)
T PRK07334 120 VVLHGETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVALEMLEDAP-DLDTLVVPIGGGGLISGMATAAKALKPD 198 (403)
T ss_pred EEEECcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHHHHHhcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCC
Confidence 4456889999999998776 899996 7999999999999999999999999999
Q ss_pred ceEEEEecCCcccccCC-------CCccccccccCCC---CCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNGG-------KPGLHLIQGIGIG---IIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~-------~~~~~~~~g~~~~---~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||+|||++++.+... ...++.++|++.+ ..+..+.+.++|+++.|+| +|+++++++|++.|||+
T Consensus 199 ~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d-~e~~~a~~~l~~~~gi~ 274 (403)
T PRK07334 199 IEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSE-ADIEQAVSLLLEIEKTV 274 (403)
T ss_pred CEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHhcCCE
Confidence 99999999998776431 1234567788743 2344456678999999999 99999999999999985
No 30
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-41 Score=278.11 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=153.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.++++++.. .+ ||++|+||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 42 ~~nptGS~K~R~a~~~i~~a~~~~~~---~g---vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~ 115 (322)
T PRK07476 42 TLQPTGSFKLRGATNALLSLSAQERA---RG---VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAE 115 (322)
T ss_pred cCCCCCCchHHHHHHHHHhhhhhhhC---Ce---EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 47999999999999999999988742 23 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
.++.+++|++||+|+.+++ |++|++ ++|+||+|+|+||+++|++.+||+++|+
T Consensus 116 V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~ 194 (322)
T PRK07476 116 VRIVGRSQDDAQAEVERLVREEGLTMVPPFDDPRIIAGQGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPA 194 (322)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcceeechhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCC
Confidence 3456789999999998765 899997 6999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CC-----CccccccccCCCC-----CccccccccCCcEEEeCCHHHHHHHHHHHHHhcCC
Q 038938 128 MKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGI-----IPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGL 193 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~-----~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi 193 (194)
+|||+|||++++.+.. ++ ...+..++++.+. .+..+.+.++|+++.|+| +|+++++++|+++|||
T Consensus 195 ~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d-~e~~~a~~~l~~~~gi 273 (322)
T PRK07476 195 IRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDE-AEIAAGIRHAYREERL 273 (322)
T ss_pred CEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECH-HHHHHHHHHHHHhcCc
Confidence 9999999998765432 11 1223344443221 122234568999999999 9999999999999998
Q ss_pred C
Q 038938 194 L 194 (194)
Q Consensus 194 ~ 194 (194)
+
T Consensus 274 ~ 274 (322)
T PRK07476 274 V 274 (322)
T ss_pred e
Confidence 5
No 31
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.3e-41 Score=276.19 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=152.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.+.... .+ |+++||||||+|+|++|+.+|++|+||||++.++.|+.
T Consensus 50 ~~nptGS~KdR~a~~~i~~~~~~~~~---~~---vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 123 (333)
T PRK08638 50 NMQRTGSFKIRGAFNKLSSLTDAEKR---KG---VVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAE 123 (333)
T ss_pred cCCccCCcHHHHHHHHHHhccHHhcC---Ce---EEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCE
Confidence 57999999999999999987764221 24 99999999999999999999999999999999888766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+||.+++ |++|+. +||+||+|+|+||+++|++.+||+.+|+
T Consensus 124 V~~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~ 202 (333)
T PRK08638 124 VVLHGDNFNDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLEILEDLW-DVDTVIVPIGGGGLIAGIAVALKSINPT 202 (333)
T ss_pred EEEECcCHHHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHHHHhhcC-CCCEEEEEeChhHHHHHHHHHHHHhCCC
Confidence 3446789999999998776 899995 6999999999999999999999999999
Q ss_pred ceEEEEecCCccccc----CCCCcc-----ccccccCCCCCccccc----cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLN----GGKPGL-----HLIQGIGIGIIPTVLD----IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~----~~~~~~-----~~~~g~~~~~~~~~~~----~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++||+|||++++.+. .+++.. +..+|++... |..+. ++++|+++.|+| +|+++++++|+++||++
T Consensus 203 ~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~-p~~~~~~~~~~~~d~~v~Vsd-~ea~~a~~~l~~~~gi~ 280 (333)
T PRK08638 203 IHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSR-PGNLTYEIVRELVDDIVLVSE-DEIRNAMKDLIQRNKVV 280 (333)
T ss_pred CEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCC-ccHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHHcCCe
Confidence 999999999986543 222221 2334443332 33333 468999999999 99999999999999985
No 32
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-41 Score=274.93 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=152.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.++++++...++ ||++|+||||+|+|++|+++|++|+||||++.++.|+.
T Consensus 44 ~~nptGS~K~Rga~~~l~~a~~~~~~~~~-----vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~ 118 (322)
T PRK06110 44 NHTPTGAFKVRGGLVYFDRLARRGPRVRG-----VISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAE 118 (322)
T ss_pred cCCCcCCcHHHHHHHHHHHhhhhcCCCce-----EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 57999999999999999999987654333 99999999999999999999999999999999887765
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
++++++||+++| ++.+++ |++|++ .+|+||+|+|+||+++|++.+|++.+|+
T Consensus 119 V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~ 196 (322)
T PRK06110 119 LIEHGEDFQAAREEAARLAAERGLHMVPSF-HPDLVRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLK 196 (322)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEcCCC-CChHHhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCC
Confidence 344678999998 455444 899997 6999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CCC-----ccccccccCCCCC-ccccc--cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GKP-----GLHLIQGIGIGII-PTVLD--IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~~-----~~~~~~g~~~~~~-~~~~~--~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||+|||++++.+.. ++. ..+..+|++.... +..++ +.++|+++.|+| +|+++++++|++++|++
T Consensus 197 ~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd-~e~~~a~~~l~~~~gi~ 274 (322)
T PRK06110 197 TRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTD-DEVAAAMRAYFTDTHNV 274 (322)
T ss_pred CEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHHcCcE
Confidence 9999999999876542 221 2344556654332 22232 578999999999 99999999999999975
No 33
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=6.4e-41 Score=288.18 Aligned_cols=186 Identities=20% Similarity=0.235 Sum_probs=156.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|++++.++.+... .+ . ||++|+||||+++|++|+++|++|+||||+++|..|.+
T Consensus 40 ~lqptgSfK~RgA~n~i~~l~~~~~-~~--g---VV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~ 113 (499)
T TIGR01124 40 DLQPVFSFKLRGAYNKMAQLSPEQK-AR--G---VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGE 113 (499)
T ss_pred CCCCCCCCHHHHHHHHHHHhhHHhc-CC--E---EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 4799999999999999998744321 22 3 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+||.+++ |++|++++||+||+|+|+|||++|++.++|+.+|+
T Consensus 114 Vvl~g~~~d~a~~~a~~la~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~ 193 (499)
T TIGR01124 114 VVLHGANFDDAKAKAIELSQEKGLTFIHPFDDPLVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPE 193 (499)
T ss_pred EEEeCcCHHHHHHHHHHHHHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCC
Confidence 4557889999999998776 89999878999999999999999999999999999
Q ss_pred ceEEEEecCCcccccCC----C-----CccccccccCCCCCc-c--ccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNGG----K-----PGLHLIQGIGIGIIP-T--VLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~----~-----~~~~~~~g~~~~~~~-~--~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++++..+ + ...+.++|++...+. . .+.++++|++++|+| +|+.+++++|++.+|++
T Consensus 194 ~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d-~ei~~ai~~l~~~~gii 271 (499)
T TIGR01124 194 IKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDT-DEVCAAIKDLFEDTRAV 271 (499)
T ss_pred CEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHHhcCcE
Confidence 99999999998876431 1 123445676654431 1 223578999999999 99999999999999874
No 34
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=4.4e-41 Score=275.74 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=153.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++..+.+... ..+ ||++||||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 42 ~~nptGS~K~R~a~~~i~~~~~~~~---~~~---vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~ 115 (317)
T TIGR02991 42 HRQTTGSFKLRGATNAVLSLSDTQR---AAG---VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAE 115 (317)
T ss_pred cCCCCCCcHHHHHHHHHHhhhHhcc---CCe---EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCE
Confidence 5799999999999999998765321 124 99999999999999999999999999999999987766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+|+.+++ |++|++ .+|+||+|+|+|||++|++++||+++|+
T Consensus 116 V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~ 194 (317)
T TIGR02991 116 VRIVGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQGTLGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPD 194 (317)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcCCEeeCCCCChHHHhhHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCC
Confidence 3456889999999998776 999997 6899999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CC-----CccccccccCC--C---CCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCC
Q 038938 128 MKVYGIESVESAVLNG----GK-----PGLHLIQGIGI--G---IIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGL 193 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~--~---~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi 193 (194)
+|||+|||++++.+.. ++ ..++.++|++. + ..+..+.++++|+++.|+| +|+++++++|+++||+
T Consensus 195 ~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d-~e~~~a~~~l~~~~g~ 273 (317)
T TIGR02991 195 TRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSE-AEIAAGIRHAYAEERE 273 (317)
T ss_pred CEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHhCCc
Confidence 9999999998766542 21 12344555432 2 1233345678999999999 9999999999999998
Q ss_pred C
Q 038938 194 L 194 (194)
Q Consensus 194 ~ 194 (194)
+
T Consensus 274 ~ 274 (317)
T TIGR02991 274 I 274 (317)
T ss_pred E
Confidence 5
No 35
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.4e-40 Score=281.70 Aligned_cols=192 Identities=17% Similarity=0.155 Sum_probs=155.1
Q ss_pred CCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC---------c-----cceEEEeCCChHHHHHHHHHHHcCCcEEE
Q 038938 2 GLLD-HPSTPSRIACSMIKD-----AEDKGSISPGK---------Q-----YNVLVEITSANAGIGLASIASSRGYKIIV 61 (194)
Q Consensus 2 ~~~p-tgS~K~R~a~~~~~~-----a~~~g~~~~g~---------~-----~~~vv~aSsGN~g~a~A~~a~~~Gl~~~i 61 (194)
++|| |||||||++++++.. +++.|.+.|+. . .+.||++||||||+|+|++|+++|++|+|
T Consensus 106 ~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tI 185 (441)
T PRK02991 106 SHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTV 185 (441)
T ss_pred CCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 4799 999999999999985 45777666653 0 01399999999999999999999999999
Q ss_pred EeCCCCCHHHHh--------------------------hhc-CCeEecCCCCCCCchH--------HHHHcCC-------
Q 038938 62 KMPNTYSIQRRM--------------------------SKI-PNAYLLQQHENPANPK--------IWKDSGG------- 99 (194)
Q Consensus 62 v~p~~~~~~k~~--------------------------~~~-~~~~~~~~~~~~~~~~--------i~~q~~~------- 99 (194)
|||+++++.|++ +++ +++|++++++++..++ |++|+++
T Consensus 186 vvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~ 265 (441)
T PRK02991 186 HMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDPNCYFIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDA 265 (441)
T ss_pred EECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCeEeCCCCCchhHHHhHHHHHHHHHHHhhhccCcccc
Confidence 999999998877 223 4688999987776655 8999863
Q ss_pred -CCCEEEEecCCchhHHHHHHHHHhh-CCCceEEEEecCCcccccC----CCC-----------ccccccccCCCCCccc
Q 038938 100 -KFDALVAGIRTGGTITGAEKFLKEK-NLEMKVYGIESVESAVLNG----GKP-----------GLHLIQGIGIGIIPTV 162 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l~~~-~~~~~vigve~~~~~~~~~----~~~-----------~~~~~~g~~~~~~~~~ 162 (194)
.||+||+|+|+||+++|++.+||++ .|+++||+|||++++++.. ++. ..+.++|++++.....
T Consensus 266 ~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~ 345 (441)
T PRK02991 266 DHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGF 345 (441)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchh
Confidence 3679999999999999999999997 6899999999999875532 111 2355677776643322
Q ss_pred ---cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 163 ---LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 163 ---~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+.++++|+++.|+| +|+++++++|++++||+
T Consensus 346 ~~~~~~~~vd~~v~VsD-~ei~~a~~~L~~~~gi~ 379 (441)
T PRK02991 346 VGRAMERLLDGVYTVSD-ETLYRLLGLLADTEGIR 379 (441)
T ss_pred HHHHHHHhCCeEEEECH-HHHHHHHHHHHHhcCce
Confidence 22468999999999 99999999999999985
No 36
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-40 Score=272.39 Aligned_cols=185 Identities=16% Similarity=0.204 Sum_probs=151.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.+++. .++ ||++|+||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 47 ~~nptGS~K~R~a~~~i~~~~~~~~---~~~---vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAe 120 (321)
T PRK07048 47 NFQRMGAFKFRGAYNALSQFSPEQR---RAG---VVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGE 120 (321)
T ss_pred cCCCCCCeeHHHHHHHHHhhhHhhc---CCc---EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 4799999999999999998885432 124 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.+++|++||+|+.+++ |++|++ +||+||+|+|+|||++|++.++|+++|+
T Consensus 121 V~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~ 199 (321)
T PRK07048 121 VVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPG 199 (321)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCC
Confidence 3456789999999987765 899997 7999999999999999999999999999
Q ss_pred ceEEEEecCCccccc----CCC-----CccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLN----GGK-----PGLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~----~~~-----~~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++||+|||++++.+. .++ ...+..+|+...... .....+++|+++.|+| +|+++++++|+++|||+
T Consensus 200 ~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d-~e~~~a~~~l~~~~gi~ 277 (321)
T PRK07048 200 CKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSD-AELVDAMRFFAERMKIV 277 (321)
T ss_pred CEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECH-HHHHHHHHHHHHhCCce
Confidence 999999999987532 221 112334444322111 1122468999999999 99999999999999985
No 37
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=5.7e-40 Score=277.04 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=154.7
Q ss_pred CCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCCc--------------cceEEEeCCChHHHHHHHHHHHcCCcEEE
Q 038938 2 GLLD-HPSTPSRIACSMIKD-----AEDKGSISPGKQ--------------YNVLVEITSANAGIGLASIASSRGYKIIV 61 (194)
Q Consensus 2 ~~~p-tgS~K~R~a~~~~~~-----a~~~g~~~~g~~--------------~~~vv~aSsGN~g~a~A~~a~~~Gl~~~i 61 (194)
++|| |||||||++.++|.+ +++.|.+.+++. ++.||++||||||+|+|++|+++|++|+|
T Consensus 101 ~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~I 180 (431)
T TIGR02035 101 SHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTV 180 (431)
T ss_pred ccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEE
Confidence 4799 999999999999975 778888776641 12499999999999999999999999999
Q ss_pred EeCCCCCHHHHh---------------------------hhcCCeEecCCCCCCCchH---------HHHHcCC------
Q 038938 62 KMPNTYSIQRRM---------------------------SKIPNAYLLQQHENPANPK---------IWKDSGG------ 99 (194)
Q Consensus 62 v~p~~~~~~k~~---------------------------~~~~~~~~~~~~~~~~~~~---------i~~q~~~------ 99 (194)
|||+++++.|++ .+.+++|+.+++ |+.++. |++|+++
T Consensus 181 vmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d 259 (431)
T TIGR02035 181 HMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVD 259 (431)
T ss_pred EECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccc
Confidence 999999998887 233456777774 333322 8999953
Q ss_pred --CCCEEEEecCCchhHHHHHHHHHhh-CCCceEEEEecCCccccc----CCC-----------CccccccccCCCCCcc
Q 038938 100 --KFDALVAGIRTGGTITGAEKFLKEK-NLEMKVYGIESVESAVLN----GGK-----------PGLHLIQGIGIGIIPT 161 (194)
Q Consensus 100 --~~d~vv~~vG~GGt~~Gi~~~l~~~-~~~~~vigve~~~~~~~~----~~~-----------~~~~~~~g~~~~~~~~ 161 (194)
.||+|++|+|+||+++|++.+||++ +|+++||+|||++++++. .++ ...+.++|++++..+.
T Consensus 260 ~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~ 339 (431)
T TIGR02035 260 KEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSG 339 (431)
T ss_pred cCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcch
Confidence 4779999999999999999999997 899999999999987542 111 1246678888776444
Q ss_pred ccc---cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 162 VLD---IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 162 ~~~---~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
... +.++|++++|+| +|+++++++|+++|||+
T Consensus 340 ~~~~~~~~~vd~vv~VsD-~ei~~a~~~L~~~egi~ 374 (431)
T TIGR02035 340 FVGRLMEPLLSGIYTVDD-YTLYDLLRILAESEGKR 374 (431)
T ss_pred hHHHHHHHhCCeEEEECH-HHHHHHHHHHHHHcCCe
Confidence 332 458999999999 99999999999999985
No 38
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.8e-40 Score=285.09 Aligned_cols=186 Identities=21% Similarity=0.262 Sum_probs=155.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||+|+|.+++..+.+.. ..+ . ||++|+||||+++|++|+++|++|+||||+++|..|++
T Consensus 43 ~lqptgSfK~RgA~n~i~~l~~~~-~~~--g---vV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~ 116 (504)
T PRK09224 43 DLQPVFSFKLRGAYNKMAQLTEEQ-LAR--G---VITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGE 116 (504)
T ss_pred CCCCCCCChHHHHHHHHHhhhHHh-cCC--E---EEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 579999999999999999876432 222 3 99999999999999999999999999999999988766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||+|+.+++ |++|+++.||+||+|+|+|||++|++.++|+.+|+
T Consensus 117 Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~ 196 (504)
T PRK09224 117 VVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPE 196 (504)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCC
Confidence 3557889999999998876 89999866999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CCC-----ccccccccCCCCCc-cc--cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GKP-----GLHLIQGIGIGIIP-TV--LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~~-----~~~~~~g~~~~~~~-~~--~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||||||++++++.. +++ ..+.++|++..... .. +.++++|++++|+| +|+.+++++|++.+|++
T Consensus 197 ~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd-~ei~~a~~~l~~~~~~~ 274 (504)
T PRK09224 197 IKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDT-DEICAAIKDVFEDTRSI 274 (504)
T ss_pred CEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECH-HHHHHHHHHHHHhcCeE
Confidence 9999999999887643 111 12344666544321 12 23678999999999 99999999999999874
No 39
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=5.3e-40 Score=270.90 Aligned_cols=182 Identities=22% Similarity=0.179 Sum_probs=148.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.+++++|. ++ |+++||||||.|+|++|+++|++|+||||+++++.|+.
T Consensus 73 ~~nPTGSfKDRga~~~i~~a~~~g~----~~---vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~ 145 (338)
T PRK06450 73 FLNPTGSYKDRGSVTLISYLAEKGI----KQ---ISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAE 145 (338)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHcCC----CE---EEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999763 24 99999999999999999999999999999999988877
Q ss_pred --------------hhcCCeEecCCCCCCCchH--------HHHHcCC-CCCEEEEecCCchhHHHHHHHHHhhCC----
Q 038938 74 --------------SKIPNAYLLQQHENPANPK--------IWKDSGG-KFDALVAGIRTGGTITGAEKFLKEKNL---- 126 (194)
Q Consensus 74 --------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~~~---- 126 (194)
+++.++++++++.||.+++ |++|+++ .||+||+|+|+||+++|++++|+++.+
T Consensus 146 vi~v~~~~~~~~~~a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i 225 (338)
T PRK06450 146 VVRVRGSREDVAKAAENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVI 225 (338)
T ss_pred EEEECCCHHHHHHHHHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCc
Confidence 3446778888889998877 9999984 599999999999999999999999764
Q ss_pred --CceEEEEecCCcccccC----CC-----CccccccccCCCCCccccc------cccCCcEEEeCCHHHHHHHHHHHHH
Q 038938 127 --EMKVYGIESVESAVLNG----GK-----PGLHLIQGIGIGIIPTVLD------IKMLDEVKTVLLCHVVTETTKRLAL 189 (194)
Q Consensus 127 --~~~vigve~~~~~~~~~----~~-----~~~~~~~g~~~~~~~~~~~------~~~vd~~~~V~d~~e~~~a~~~la~ 189 (194)
.+|||+|||++++.+.. .. ...+..+++..+. |.... +.. ++++.|+| +|+++++++|++
T Consensus 226 ~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d-~ei~~a~~~La~ 302 (338)
T PRK06450 226 SEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSD-NEIVEAWKELAK 302 (338)
T ss_pred cCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECH-HHHHHHHHHHHH
Confidence 37999999999765542 11 1123344444332 22111 233 78999999 999999999987
Q ss_pred hcCCC
Q 038938 190 KGGLL 194 (194)
Q Consensus 190 ~eGi~ 194 (194)
+||+
T Consensus 303 -~Gi~ 306 (338)
T PRK06450 303 -KGLL 306 (338)
T ss_pred -cCCE
Confidence 6985
No 40
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-40 Score=269.40 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=152.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.+.. . ..+ ||++|+||||+|+|++|+++|++|+||||+.+++.|..
T Consensus 43 ~~nptgS~KdR~a~~~~~~l~~~~-~--~~~---vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~ 116 (317)
T PRK06815 43 HLQHTGSFKFRGASNKLRLLNEAQ-R--QQG---VITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAE 116 (317)
T ss_pred CCCCCCCcHHHHHHHHHHhcchhh-c--Cce---EEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 579999999999999998755432 1 223 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||+|+.++. |++|++ .||+||+|+|+||+++|++.+|++.+|+
T Consensus 117 V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~ 195 (317)
T PRK06815 117 VRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPK 195 (317)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCC
Confidence 3456788999999887654 899997 6999999999999999999999999999
Q ss_pred ceEEEEecCCcccccCC----C-----CccccccccCCCCCcc----ccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNGG----K-----PGLHLIQGIGIGIIPT----VLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~----~-----~~~~~~~g~~~~~~~~----~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++||+|||++++.+..+ + ...+.++|++.+..+. .+..+++|+++.|+| +|+++++++|++.|||+
T Consensus 196 ~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d-~e~~~a~~~la~~~gi~ 274 (317)
T PRK06815 196 TEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSE-EEIKEAMRLIAETDRWL 274 (317)
T ss_pred CEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHhcCCe
Confidence 99999999998766431 1 1234566654332222 234578999999999 99999999999999985
No 41
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-40 Score=265.89 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=159.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
.+||+||||.||+.|++.+.-++++ .+| |+++|.||||+|+|++|+++|++++||||..+|..|.+
T Consensus 89 ~lQpsgSFK~RGa~~~~~kla~~~~-~~g-----ViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~ 162 (457)
T KOG1250|consen 89 DLQPSGSFKIRGAGNALQKLAKQQK-KAG-----VIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGAT 162 (457)
T ss_pred hcccccceehhhHHHHHHHHHHhhh-cCc-----eEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCE
Confidence 4799999999999999998777653 344 99999999999999999999999999999999988777
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.++.|+++||+|+.|+ |.+|+..++++|+||||+||+++||+.++++..|+
T Consensus 163 Vil~G~~~deAk~~a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~ 242 (457)
T KOG1250|consen 163 VILSGEDWDEAKAFAKRLAKENGLTYIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPH 242 (457)
T ss_pred EEEecccHHHHHHHHHHHHHhcCceecCCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCC
Confidence 6778999999999999887 89999877779999999999999999999999999
Q ss_pred ceEEEEecCCcccccCC----C-----CccccccccCCCCCccc---cccccCCcEEEeCCHHHHHHHHHHHHHhcCC
Q 038938 128 MKVYGIESVESAVLNGG----K-----PGLHLIQGIGIGIIPTV---LDIKMLDEVKTVLLCHVVTETTKRLALKGGL 193 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~----~-----~~~~~~~g~~~~~~~~~---~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi 193 (194)
++|||||+++|.++..+ + ...+.++|++...+..+ ....++|+.+.|+| +|+..++.+|.+.|.+
T Consensus 243 vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~-~ei~aaI~~l~edek~ 319 (457)
T KOG1250|consen 243 VKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVED-DEIAAAILRLFEDEKM 319 (457)
T ss_pred CceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEecc-HHHHHHHHHHHHhhhh
Confidence 99999999999876542 2 23355677776554332 23678999999999 9999999999987754
No 42
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=8.8e-40 Score=267.36 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=147.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++.+ ++.+ ||++||||||+|+|++|+++|++|+||||+.+++.|..
T Consensus 45 ~~nptGS~K~R~a~~~~~~~~~-----~~~~---vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 116 (310)
T PRK08246 45 HLQHTGSFKARGAFNRLLAAPV-----PAAG---VVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAE 116 (310)
T ss_pred CCCCCCCCHHHHHHHHHHhhcc-----cCCe---EEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCE
Confidence 5899999999999999987654 3445 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++.++++++||+|+.++. |++|++ .||+||+|+|+|||++|++.+|+. .
T Consensus 117 V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~t~~~Ei~eq~~-~~D~iv~~vG~GG~~~Gi~~~~~~---~ 192 (310)
T PRK08246 117 VVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGLEIEEQAP-GVDTVLVAVGGGGLIAGIAAWFEG---R 192 (310)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchHHHHHHHHHhcC-CCCEEEEecCccHHHHHHHHHhcC---C
Confidence 3456899999999998765 999986 799999999999999999999964 4
Q ss_pred ceEEEEecCCcccccC----CCCcccc-----ccccCCCCCcc---ccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GKPGLHL-----IQGIGIGIIPT---VLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~~~~~~-----~~g~~~~~~~~---~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++||+|||++++.+.. ++...+. .++++.+..+. .+.++++|+++.|+| +|+++++++|++.|||+
T Consensus 193 ~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd-~e~~~a~~~l~~~egi~ 270 (310)
T PRK08246 193 ARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSD-EAIIAARRALWEELRLA 270 (310)
T ss_pred CEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECH-HHHHHHHHHHHHHcCce
Confidence 8999999999876643 2222222 23344433322 244678999999999 99999999999999985
No 43
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=4.5e-39 Score=266.81 Aligned_cols=183 Identities=22% Similarity=0.135 Sum_probs=152.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.++++.|. .+ ||++||||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 80 ~~nPtGSfKdRga~~~i~~a~~~g~----~~---vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~ 152 (347)
T PRK08329 80 YLQPTGSFKDRGTYVTVAKLKEEGI----NE---VVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAE 152 (347)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHcCC----CE---EEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCE
Confidence 5799999999999999999999874 35 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhC--
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKN-- 125 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~-- 125 (194)
+++.+++|++++.||.+++ |++|++ .||+||+|+|+||+++|++++|+++.
T Consensus 153 v~~v~~~~~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~ 231 (347)
T PRK08329 153 LHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEM 231 (347)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhc
Confidence 2345667888888888766 999997 79999999999999999999999863
Q ss_pred ----CCceEEEEecCCcccccC-CCCccccccccCCCCCccc-----cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 126 ----LEMKVYGIESVESAVLNG-GKPGLHLIQGIGIGIIPTV-----LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 126 ----~~~~vigve~~~~~~~~~-~~~~~~~~~g~~~~~~~~~-----~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+.+|||+|||+++..+.. .+...+.++|++.+..+.. +.+++.+.++.|+| +|+++++++|++ +||+
T Consensus 232 g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d-~e~~~a~~~l~~-~Gi~ 308 (347)
T PRK08329 232 GEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGE-EETRAALHWLRR-MGFL 308 (347)
T ss_pred CCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHh-cCce
Confidence 568999999999765543 2334566778776543322 12445678999999 999999999986 8985
No 44
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=4.4e-39 Score=271.02 Aligned_cols=185 Identities=21% Similarity=0.184 Sum_probs=151.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+|++.|. .+ ||++||||||+|+|++|+++|++|+||+|+++++.|+.
T Consensus 103 ~~nPtGSfKdRga~~~i~~a~~~g~----~~---vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~ 175 (394)
T PRK08197 103 GLNPTGSFKARGLAVGVSRAKELGV----KH---LAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAE 175 (394)
T ss_pred CCCCCcCcHHhHHHHHHHHHHHcCC----CE---EEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999998874 34 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCC-CCCEEEEecCCchhHHHHHHHHHhh--
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGG-KFDALVAGIRTGGTITGAEKFLKEK-- 124 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~-- 124 (194)
+++.++|+.+++.||.+++ |++|+++ .||+||+|+|+||+++|++++|+++
T Consensus 176 Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~ 255 (394)
T PRK08197 176 LYLVDGLISDAGKIVAEAVAEYGWFDVSTLKEPYRIEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEA 255 (394)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCcccccCCCCccchhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHH
Confidence 3446889999999998876 9999986 4999999999999999999999986
Q ss_pred -----CCCceEEEEecCCcccccC----CCC-------ccccccccCCCCCcc---ccc--cccCCcEEEeCCHHHHHHH
Q 038938 125 -----NLEMKVYGIESVESAVLNG----GKP-------GLHLIQGIGIGIIPT---VLD--IKMLDEVKTVLLCHVVTET 183 (194)
Q Consensus 125 -----~~~~~vigve~~~~~~~~~----~~~-------~~~~~~g~~~~~~~~---~~~--~~~vd~~~~V~d~~e~~~a 183 (194)
.+.+|||+|||++++.+.. +.. ..+..+|+..+.... .++ ++..+.++.|+| +|++++
T Consensus 256 ~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d-~e~~~a 334 (394)
T PRK08197 256 LGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSD-DAILAA 334 (394)
T ss_pred cCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCH-HHHHHH
Confidence 3889999999999866532 111 122334443322111 111 245678999999 999999
Q ss_pred HHHHHHhcCCC
Q 038938 184 TKRLALKGGLL 194 (194)
Q Consensus 184 ~~~la~~eGi~ 194 (194)
+++|+++|||+
T Consensus 335 ~~~la~~eGi~ 345 (394)
T PRK08197 335 QRELAREEGLF 345 (394)
T ss_pred HHHHHhcCCce
Confidence 99999999985
No 45
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=3.3e-39 Score=263.55 Aligned_cols=185 Identities=21% Similarity=0.242 Sum_probs=154.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.++++.+ ++.+ ||++||||||+|+|++|+++|++|++|+|++.+++|+.
T Consensus 40 ~~nptgS~Kdr~a~~~l~~~~~~~---~~~~---iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~ 113 (304)
T cd01562 40 NLQKTGSFKIRGAYNKLLSLSEEE---RAKG---VVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAE 113 (304)
T ss_pred cCCCcCCcHHHhHHHHHHhcCHhh---cCCc---EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 579999999999999999988775 2345 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
+++++++|++||.|+.++. |++|++ .||+||+|+|+|||++|++++||+.+|+
T Consensus 114 vi~~~~~~~~~~~~a~~la~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~ 192 (304)
T cd01562 114 VVLYGEDFDEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPN 192 (304)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCC
Confidence 4556889999999987755 899997 4999999999999999999999999999
Q ss_pred ceEEEEecCCcccccC----CCC-----ccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 128 MKVYGIESVESAVLNG----GKP-----GLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 128 ~~vigve~~~~~~~~~----~~~-----~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
+|||+|||.+++.+.. ++. ..+..+|++..... ..+.++++|+++.|+| +|+++++++|+++|||+
T Consensus 193 ~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d-~e~~~a~~~l~~~eGi~ 270 (304)
T cd01562 193 TKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSE-DEIAAAMLLLFEREKLV 270 (304)
T ss_pred CEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECH-HHHHHHHHHHHHHcCce
Confidence 9999999998876532 111 12334455443221 1234577999999999 99999999999999985
No 46
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=7.8e-39 Score=262.99 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=146.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+++++|. ++ ||++|+||||+|+|++|+++|++|+||||...+..|++
T Consensus 39 ~~nptGS~K~R~a~~~l~~a~~~g~----~~---lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~ 111 (319)
T PRK06381 39 GANPTGTQKDRIAEAHVRRAMRLGY----SG---ITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAE 111 (319)
T ss_pred CCCCccCcHHHHHHHHHHHHHHcCC----CE---EEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999874 35 99999999999999999999999999999998877765
Q ss_pred ------------------hhcCCeEecCCCC-CC-CchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhh-
Q 038938 74 ------------------SKIPNAYLLQQHE-NP-ANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEK- 124 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~-~~-~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~- 124 (194)
.+.+++|+.++++ |+ .+++ |++|++..||+||+|+|+|||++|++++|+++
T Consensus 112 V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~ 191 (319)
T PRK06381 112 IIYVDGKYEEAVERSRKFAKENGIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLY 191 (319)
T ss_pred EEEcCCCHHHHHHHHHHHHHHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHH
Confidence 3346788888885 66 4444 99999867999999999999999999999998
Q ss_pred -----CCCceEEEEecCCcccccCC-CCccccccc----------cCCCCC-----c--c--ccccccCCcEEEeCCHHH
Q 038938 125 -----NLEMKVYGIESVESAVLNGG-KPGLHLIQG----------IGIGII-----P--T--VLDIKMLDEVKTVLLCHV 179 (194)
Q Consensus 125 -----~~~~~vigve~~~~~~~~~~-~~~~~~~~g----------~~~~~~-----~--~--~~~~~~vd~~~~V~d~~e 179 (194)
+|+++||+|||.+++.+..+ ..+...+.+ +..+.. . . .+..++.++++.|+| +|
T Consensus 192 ~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d-~e 270 (319)
T PRK06381 192 DRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSD-DE 270 (319)
T ss_pred hCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECH-HH
Confidence 79999999999987544321 011111111 111100 0 0 012345678999999 99
Q ss_pred HHHHHHHHHHhcCCC
Q 038938 180 VTETTKRLALKGGLL 194 (194)
Q Consensus 180 ~~~a~~~la~~eGi~ 194 (194)
+++++++|+++|||+
T Consensus 271 ~~~a~~~la~~egi~ 285 (319)
T PRK06381 271 MVKYAELLRRMEGLN 285 (319)
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999999986
No 47
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=4.2e-39 Score=267.27 Aligned_cols=183 Identities=22% Similarity=0.291 Sum_probs=144.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~~k~~------- 73 (194)
++|||||||||++.++|.+++++|. ++ ||++|+||||+|+|++|+++|++|+||||++ .+..|+.
T Consensus 51 ~~nptGS~KdR~a~~~i~~a~~~g~----~~---vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA 123 (351)
T PRK06352 51 GLNPTGSFKDRGMVMAVAKAKEEGA----EA---VICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGA 123 (351)
T ss_pred CCCCccChHHHHHHHHHHHHHHCCC----CE---EEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCC
Confidence 4799999999999999999999874 35 9999999999999999999999999999997 4666655
Q ss_pred -------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCC
Q 038938 74 -------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNL 126 (194)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~ 126 (194)
.++.++++.+ +.|+.+++ |++|++..||+||+|+|+||+++|++++||+++|
T Consensus 124 ~V~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~n~~~~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~ 202 (351)
T PRK06352 124 DIISIQGNFDEALKSVRELAETEAVTLVN-SVNPYRLEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNE 202 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCccccc-CCCccceeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHh
Confidence 2345555555 55777654 9999987899999999999999999999999887
Q ss_pred C-----ceEEEEecCCcccccCCCCc---cccccccCCCCCcccc--ccccCC----cEEEeCCHHHHHHHHHHHHHhcC
Q 038938 127 E-----MKVYGIESVESAVLNGGKPG---LHLIQGIGIGIIPTVL--DIKMLD----EVKTVLLCHVVTETTKRLALKGG 192 (194)
Q Consensus 127 ~-----~~vigve~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~--~~~~vd----~~~~V~d~~e~~~a~~~la~~eG 192 (194)
+ ++||+|||++++.+..++.. .+..+++..+. +..+ ....+| .++.|+| +|+++++++|+++||
T Consensus 203 ~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~-~~~~~~~~~~~d~~~g~~~~V~d-~e~~~a~r~la~~eG 280 (351)
T PRK06352 203 AKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGN-PASWGLAEAARDESGGYIHSVTD-DEIVNAYKKIAAQDG 280 (351)
T ss_pred cCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCC-CCcHHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHhhcC
Confidence 7 89999999998765443321 12234443332 2111 122344 4899999 999999999999999
Q ss_pred CC
Q 038938 193 LL 194 (194)
Q Consensus 193 i~ 194 (194)
|+
T Consensus 281 i~ 282 (351)
T PRK06352 281 VF 282 (351)
T ss_pred ce
Confidence 85
No 48
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=3.4e-38 Score=267.25 Aligned_cols=185 Identities=16% Similarity=0.216 Sum_probs=149.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++..|++.|. .+ |+++||||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 113 ~~nPtGSfKdRga~~~v~~A~~~g~----~~---vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~ 185 (421)
T PRK07591 113 SVNPTHSFKDRVVSVALTAARELGF----TT---VACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPT 185 (421)
T ss_pred CCCCccChHHHHHHHHHHHHHHcCC----CE---EEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 5799999999999999999999874 24 99999999999999999999999999999998887766
Q ss_pred ------------------hhc-CCeEecCCCCCCCchH--------HHHHcCCC-CCEEEEecCCchhHHHHHHHHHhh-
Q 038938 74 ------------------SKI-PNAYLLQQHENPANPK--------IWKDSGGK-FDALVAGIRTGGTITGAEKFLKEK- 124 (194)
Q Consensus 74 ------------------~~~-~~~~~~~~~~~~~~~~--------i~~q~~~~-~d~vv~~vG~GGt~~Gi~~~l~~~- 124 (194)
+++ +++++.+++.||+..+ |++|++++ ||+||+|+|+||+++|++.+|+++
T Consensus 186 Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~ 265 (421)
T PRK07591 186 LVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYYAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELI 265 (421)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCcccccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHH
Confidence 223 3788888877877643 99999865 999999999999999999999997
Q ss_pred ------CCCceEEEEecCCcccccC----CCC------ccccccccCCCCCcc---c--cccccCCcEEEeCCHHHHHHH
Q 038938 125 ------NLEMKVYGIESVESAVLNG----GKP------GLHLIQGIGIGIIPT---V--LDIKMLDEVKTVLLCHVVTET 183 (194)
Q Consensus 125 ------~~~~~vigve~~~~~~~~~----~~~------~~~~~~g~~~~~~~~---~--~~~~~vd~~~~V~d~~e~~~a 183 (194)
.+.+|||+|||++++.+.. +.. ..+..+++..+.... . ..+++.++++.|+| +|++++
T Consensus 266 ~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd-~ei~~a 344 (421)
T PRK07591 266 KVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTD-EEIIEG 344 (421)
T ss_pred hcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECH-HHHHHH
Confidence 5789999999999765542 110 123344443332111 0 11345678999999 999999
Q ss_pred HHHHHHhcCCC
Q 038938 184 TKRLALKGGLL 194 (194)
Q Consensus 184 ~~~la~~eGi~ 194 (194)
+++|++.|||+
T Consensus 345 ~~~la~~eGi~ 355 (421)
T PRK07591 345 IKLLARTEGIF 355 (421)
T ss_pred HHHHHhcCCee
Confidence 99999999985
No 49
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=243.82 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=154.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
.+|.|||||.|||+|.+..+.++.. .+| |++.||||||.|+|++|+.+|++++||||++.|..|..
T Consensus 48 ~fQKtGaFKfRGAlNav~~l~~ek~-~kg-----vithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ 121 (323)
T KOG1251|consen 48 NFQKTGAFKFRGALNAVSSLKAEKR-AKG-----VITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGAN 121 (323)
T ss_pred hhhhccceehhhhHHHHHHhhHhhh-cCc-----eEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCce
Confidence 4799999999999999998885532 344 99999999999999999999999999999999988776
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCC
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLE 127 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~ 127 (194)
.++.+++++++|++|..+. +++|.+ .+|++|+|+|+||+++|++...+.+.|+
T Consensus 122 ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~ 200 (323)
T KOG1251|consen 122 IIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPS 200 (323)
T ss_pred EEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCC
Confidence 5778999999999998665 899997 8999999999999999999999999999
Q ss_pred ceEEEEecCCcccccCCC---------CccccccccCCCCCc---cccccccCCcEEEeCCHHHHHHHHHHHHHhcCC
Q 038938 128 MKVYGIESVESAVLNGGK---------PGLHLIQGIGIGIIP---TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGL 193 (194)
Q Consensus 128 ~~vigve~~~~~~~~~~~---------~~~~~~~g~~~~~~~---~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi 193 (194)
++|++|||++++.-+.+. ...++++|+...... ..+-++++|++++|+| +|+.++++.+|++..+
T Consensus 201 i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e-~Ei~~~lk~~~ermK~ 277 (323)
T KOG1251|consen 201 IEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSE-DEIKEALKLIWERMKV 277 (323)
T ss_pred cEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecH-HHHHHHHHHHHHHHhe
Confidence 999999998876433221 223556676554332 2234678999999999 9999999999987543
No 50
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=6.8e-38 Score=257.95 Aligned_cols=184 Identities=23% Similarity=0.210 Sum_probs=150.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+++++|. .+ ||++|+||||+|+|++|+++|++|+||||+++++.+++
T Consensus 46 ~~nptGS~K~R~a~~~l~~a~~~g~----~~---vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~ 118 (324)
T cd01563 46 GLNPTGSFKDRGMTVAVSKAKELGV----KA---VACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGAT 118 (324)
T ss_pred CCCCcccHHHhhHHHHHHHHHHcCC----CE---EEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCE
Confidence 4799999999999999999998762 35 99999999999999999999999999999999887766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCC-CCCEEEEecCCchhHHHHHHHHHhhC-
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGG-KFDALVAGIRTGGTITGAEKFLKEKN- 125 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~~- 125 (194)
.++. ++|++||+|+.+++ |++|+++ .||+||+|+|+|||++|++.+|+++.
T Consensus 119 Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~ 197 (324)
T cd01563 119 VLAVEGNFDDALRLVRELAEEN-WIYLSNSLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKE 197 (324)
T ss_pred EEEECCcHHHHHHHHHHHHHhc-CeeccCCCCcceecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHh
Confidence 2233 78899999998766 8999974 69999999999999999999999875
Q ss_pred -----CCceEEEEecCCcccccC----CC-------CccccccccCCCCCc---cc--cccccCCcEEEeCCHHHHHHHH
Q 038938 126 -----LEMKVYGIESVESAVLNG----GK-------PGLHLIQGIGIGIIP---TV--LDIKMLDEVKTVLLCHVVTETT 184 (194)
Q Consensus 126 -----~~~~vigve~~~~~~~~~----~~-------~~~~~~~g~~~~~~~---~~--~~~~~vd~~~~V~d~~e~~~a~ 184 (194)
|+++||+|||.+++.+.. +. ...+.++|++.+... .. +...+.|+++.|+| +|+++++
T Consensus 198 ~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d-~e~~~a~ 276 (324)
T cd01563 198 LGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSD-EEILEAQ 276 (324)
T ss_pred CCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECH-HHHHHHH
Confidence 589999999999865532 11 123345566544321 11 12356789999999 9999999
Q ss_pred HHHHHhcCCC
Q 038938 185 KRLALKGGLL 194 (194)
Q Consensus 185 ~~la~~eGi~ 194 (194)
++|++.|||+
T Consensus 277 ~~l~~~~gi~ 286 (324)
T cd01563 277 KLLARTEGIF 286 (324)
T ss_pred HHHHhcCCce
Confidence 9999999985
No 51
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1e-37 Score=259.21 Aligned_cols=183 Identities=21% Similarity=0.238 Sum_probs=145.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTY-SIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~-~~~k~~------- 73 (194)
++|||||||||++.+++.+++++|. .+ ||++||||||+|+|++|+++|++|+||||+.. ++.|++
T Consensus 51 ~~nptGS~KdR~a~~~i~~a~~~g~----~~---vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA 123 (352)
T PRK06721 51 GANPTGSFKDRGMVMAVAKAKEEGS----EA---IICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGA 123 (352)
T ss_pred CCCCccchHHHHHHHHHHHHHHCCC----CE---EEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999999998874 35 99999999999999999999999999999874 665554
Q ss_pred -------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHH----HHHH
Q 038938 74 -------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAE----KFLK 122 (194)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~----~~l~ 122 (194)
+++.++++.+ +.|+.+++ |++|+++.||+||+|+|+||+++|++ +++|
T Consensus 124 ~V~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~n~~~~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk 202 (352)
T PRK06721 124 EIISIEGNFDDALKAVRNIAAEEPITLVN-SVNPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEK 202 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCceecc-CCCchhhhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHH
Confidence 3344566664 56777654 89999877999999999999999854 4555
Q ss_pred hhC-CCceEEEEecCCcccccCCCC---ccccccccCCCCCcccc------ccccCCcEEEeCCHHHHHHHHHHHHHhcC
Q 038938 123 EKN-LEMKVYGIESVESAVLNGGKP---GLHLIQGIGIGIIPTVL------DIKMLDEVKTVLLCHVVTETTKRLALKGG 192 (194)
Q Consensus 123 ~~~-~~~~vigve~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~------~~~~vd~~~~V~d~~e~~~a~~~la~~eG 192 (194)
+.+ |+++||+|||++++.+..+.. ..+..++++.+. +..+ ...++|+++.|+| +|+++++++|+++||
T Consensus 203 ~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d-~e~~~a~~~la~~eG 280 (352)
T PRK06721 203 EKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSD-EEILHAYRLLAKSEG 280 (352)
T ss_pred hcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECH-HHHHHHHHHHHHhcC
Confidence 554 899999999999877654421 223445555442 2111 1347899999999 999999999999999
Q ss_pred CC
Q 038938 193 LL 194 (194)
Q Consensus 193 i~ 194 (194)
|+
T Consensus 281 i~ 282 (352)
T PRK06721 281 VF 282 (352)
T ss_pred cc
Confidence 86
No 52
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.5e-37 Score=258.50 Aligned_cols=183 Identities=22% Similarity=0.251 Sum_probs=145.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~~k~~------- 73 (194)
++|||||||||++.+++..++++|. .+ ||++||||||+++|++|+++|++|+||||++ .++.|++
T Consensus 54 ~~nptGSfKdR~a~~~l~~a~~~g~----~~---iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA 126 (353)
T PRK07409 54 GLNPTGSFKDRGMTMAVTKAKEEGA----KA---VICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGA 126 (353)
T ss_pred CCCCccchHHHHHHHHHHHHHHCCC----CE---EEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCC
Confidence 5799999999999999999998874 25 9999999999999999999999999999997 5666654
Q ss_pred -------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCC
Q 038938 74 -------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNL 126 (194)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~ 126 (194)
.++.++++.++ .|+.+++ |++|+++.||+||+|+|+||+++|++.+|++..+
T Consensus 127 ~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-~n~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~ 205 (353)
T PRK07409 127 EIIQIDGNFDDALEIVRELAEKYPVTLVNS-VNPYRIEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQ 205 (353)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCceecCC-CCchhhhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHH
Confidence 22345667765 4777655 8999977899999999999999999999998643
Q ss_pred ------CceEEEEecCCcccccCCCC---ccccccccCCCCCccccc------cccCCcEEEeCCHHHHHHHHHHHHHhc
Q 038938 127 ------EMKVYGIESVESAVLNGGKP---GLHLIQGIGIGIIPTVLD------IKMLDEVKTVLLCHVVTETTKRLALKG 191 (194)
Q Consensus 127 ------~~~vigve~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~------~~~vd~~~~V~d~~e~~~a~~~la~~e 191 (194)
.+|||+|||.+++.+..++. ..+..++++.+. +..+. +.+.++++.|+| +|+++++++|+++|
T Consensus 206 ~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd-~e~~~a~~~l~~~e 283 (353)
T PRK07409 206 DGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTD-EEILEAYRLLARKE 283 (353)
T ss_pred cCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHHhC
Confidence 49999999999876654322 223445554432 22221 234567999999 99999999999999
Q ss_pred CCC
Q 038938 192 GLL 194 (194)
Q Consensus 192 Gi~ 194 (194)
||+
T Consensus 284 gi~ 286 (353)
T PRK07409 284 GVF 286 (353)
T ss_pred Cce
Confidence 985
No 53
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=242.63 Aligned_cols=189 Identities=32% Similarity=0.467 Sum_probs=167.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
.+||.||.|||.|+++|+.|++.|++.+|.. |+|.|+||+|+++|..|+.+|++|+|+||++.+.+|.+
T Consensus 72 f~NPggS~KDRvAl~iir~Aee~GkL~~gg~---v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~ 148 (391)
T KOG1481|consen 72 FLNPGGSVKDRVALYIIRTAEEKGKLVRGGT---VVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAE 148 (391)
T ss_pred ccCCCCChhhhhHHHHHHHHHHcCCcccCce---EEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcce
Confidence 3799999999999999999999999999988 99999999999999999999999999999999999887
Q ss_pred ----------------------hh-----cC--CeEecCCCCCCCchH---------HHHHcCCCCCEEEEecCCchhHH
Q 038938 74 ----------------------SK-----IP--NAYLLQQHENPANPK---------IWKDSGGKFDALVAGIRTGGTIT 115 (194)
Q Consensus 74 ----------------------~~-----~~--~~~~~~~~~~~~~~~---------i~~q~~~~~d~vv~~vG~GGt~~ 115 (194)
++ .. -.+|.+||+|+.||. ||.|..+++|++++++|+|||++
T Consensus 149 V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTia 228 (391)
T KOG1481|consen 149 VHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIA 228 (391)
T ss_pred eeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchH
Confidence 11 11 136889999999987 99999999999999999999999
Q ss_pred HHHHHHHhhCCC-ceEEEEecCCcccccC-------------C----CCccccccccCCCCCccccc--cccCCcEEEeC
Q 038938 116 GAEKFLKEKNLE-MKVYGIESVESAVLNG-------------G----KPGLHLIQGIGIGIIPTVLD--IKMLDEVKTVL 175 (194)
Q Consensus 116 Gi~~~l~~~~~~-~~vigve~~~~~~~~~-------------~----~~~~~~~~g~~~~~~~~~~~--~~~vd~~~~V~ 175 (194)
|+.++||+..+. +.++.++|-++-.+.. + ....++.+|+|..++..++. .+++|+.+.|+
T Consensus 229 GVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~ 308 (391)
T KOG1481|consen 229 GVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVT 308 (391)
T ss_pred HHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecC
Confidence 999999999876 9999999999854432 1 12346678999988887764 56799999999
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 038938 176 LCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 176 d~~e~~~a~~~la~~eGi~ 194 (194)
| ++++++.|.|...+|+|
T Consensus 309 D-eqai~Msr~Ll~~dGLF 326 (391)
T KOG1481|consen 309 D-EQAINMSRYLLDNDGLF 326 (391)
T ss_pred h-HHHHHHHHHhhhcCceE
Confidence 9 99999999999999986
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=4e-37 Score=263.27 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=148.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCC-CCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHh------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSIS-PGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSIQRRM------ 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~-~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~~k~~------ 73 (194)
++|||||||||++.+++..+.+.|... ++.. |+++||||||+|+|++|+++|++|+||+|++ .+..|+.
T Consensus 158 ~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~---Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~G 234 (484)
T PLN02569 158 GISHTGSFKDLGMTVLVSQVNRLRKMAKPVVG---VGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANG 234 (484)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhhhccCCccE---EEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcC
Confidence 579999999999999999999877532 2334 9999999999999999999999999999996 6756655
Q ss_pred --------------------hhcCCeEecCCCCCCCchH--------HHHHcCCC-CCEEEEecCCchhHHHHHHHHHhh
Q 038938 74 --------------------SKIPNAYLLQQHENPANPK--------IWKDSGGK-FDALVAGIRTGGTITGAEKFLKEK 124 (194)
Q Consensus 74 --------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~-~d~vv~~vG~GGt~~Gi~~~l~~~ 124 (194)
.++.++|+++++ ||.+++ |++|++++ ||+||+|+|+||+++|++++|+++
T Consensus 235 A~Vi~v~g~~d~a~~~a~e~~~~~~~~~~n~~-Np~~ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel 313 (484)
T PLN02569 235 ALVLSIDTDFDGCMRLIREVTAELPIYLANSL-NSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMC 313 (484)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCEecCCC-CcchhHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHH
Confidence 234568899988 888776 99999875 999999999999999999999986
Q ss_pred C------CCceEEEEecCCcccccC----CC-------CccccccccCCCCCcccccc------ccCCcEEEeCCHHHHH
Q 038938 125 N------LEMKVYGIESVESAVLNG----GK-------PGLHLIQGIGIGIIPTVLDI------KMLDEVKTVLLCHVVT 181 (194)
Q Consensus 125 ~------~~~~vigve~~~~~~~~~----~~-------~~~~~~~g~~~~~~~~~~~~------~~vd~~~~V~d~~e~~ 181 (194)
. +.+|||+|||++++.+.. +. ..++.+++++.+. |..++. ..-+.++.|+| +|++
T Consensus 314 ~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsD-eEi~ 391 (484)
T PLN02569 314 KELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATE-EELM 391 (484)
T ss_pred HHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECH-HHHH
Confidence 3 457999999999865542 11 2345566766553 333222 12244699999 9999
Q ss_pred HHHHHHHHhcCCC
Q 038938 182 ETTKRLALKGGLL 194 (194)
Q Consensus 182 ~a~~~la~~eGi~ 194 (194)
+++++ ++++||+
T Consensus 392 ~a~~~-a~~~Gi~ 403 (484)
T PLN02569 392 DAQAE-ADKTGMF 403 (484)
T ss_pred HHHHH-HHHCCcE
Confidence 99999 8889985
No 55
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=3.8e-37 Score=259.52 Aligned_cols=183 Identities=25% Similarity=0.212 Sum_probs=146.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~~k~~------- 73 (194)
++|||||||||++.++|.+++++|. ++ ||++||||||+|+|++|+++|++|+||+|++ +++.|+.
T Consensus 91 ~~nPTGSfKdRga~~~v~~a~~~g~----~~---vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA 163 (397)
T PRK06260 91 GANPTGSFKDRGMTVGVTKALELGV----KT---VACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGA 163 (397)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHcCC----CE---EEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCC
Confidence 5799999999999999999999874 35 9999999999999999999999999999987 6766655
Q ss_pred -------------------hhcCCeEecCCCCCCCchH--------HHHHcCC-CCCEEEEecCCchhHHHHHHHHHhhC
Q 038938 74 -------------------SKIPNAYLLQQHENPANPK--------IWKDSGG-KFDALVAGIRTGGTITGAEKFLKEKN 125 (194)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~~ 125 (194)
.++.++|+++++ ||.+.+ |++|+++ .||+||+|+|+||+++|++.+|+++.
T Consensus 164 ~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~-np~~~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~ 242 (397)
T PRK06260 164 KVLEVDGNFDDALDMVVELAKEGKIYLLNSI-NPFRLEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELV 242 (397)
T ss_pred EEEEECCcHHHHHHHHHHHHhhCCEEeecCC-CchhhcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH
Confidence 344578888887 777655 9999987 69999999999999999999999875
Q ss_pred ------CCceEEEEecCCcccccC----CCC-------ccccccccCCCCCcccc------ccccCCcEEEeCCHHHHHH
Q 038938 126 ------LEMKVYGIESVESAVLNG----GKP-------GLHLIQGIGIGIIPTVL------DIKMLDEVKTVLLCHVVTE 182 (194)
Q Consensus 126 ------~~~~vigve~~~~~~~~~----~~~-------~~~~~~g~~~~~~~~~~------~~~~vd~~~~V~d~~e~~~ 182 (194)
+.+|||+|||+++..+.. +.. ..+..+++..+. +... -++..++++.|+| +|+++
T Consensus 243 ~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d-~e~~~ 320 (397)
T PRK06260 243 ELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSD-EEILD 320 (397)
T ss_pred hcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECH-HHHHH
Confidence 347999999999865532 111 122334443321 2111 1334578999999 99999
Q ss_pred HHHHHHHhcCCC
Q 038938 183 TTKRLALKGGLL 194 (194)
Q Consensus 183 a~~~la~~eGi~ 194 (194)
++++|+++|||+
T Consensus 321 a~~~la~~eGi~ 332 (397)
T PRK06260 321 AQKLLARKEGIG 332 (397)
T ss_pred HHHHHHHhCCCe
Confidence 999999999985
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=3e-37 Score=259.78 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=145.2
Q ss_pred CCCCchhhHHHHHHHHHHHHc--CC--------------C---CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 4 LDHPSTPSRIACSMIKDAEDK--GS--------------I---SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 4 ~ptgS~K~R~a~~~~~~a~~~--g~--------------~---~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|||||||||++.+.+..+..+ +. + .++.+ |+++|+||||+|+|++|+++|++|+||||
T Consensus 71 ~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---vv~aSsGN~g~alA~~a~~~G~~~~Ivvp 147 (399)
T PRK08206 71 FGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDIT---FATATDGNHGRGVAWAAQQLGQKAVIYMP 147 (399)
T ss_pred CCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCE---EEEeCCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 599999999999999887632 21 0 02334 99999999999999999999999999999
Q ss_pred CCCCHHHHh--------------------------hhcCCeEecC-----CCCC-CCc-hH--------HHHHcCC---C
Q 038938 65 NTYSIQRRM--------------------------SKIPNAYLLQ-----QHEN-PAN-PK--------IWKDSGG---K 100 (194)
Q Consensus 65 ~~~~~~k~~--------------------------~~~~~~~~~~-----~~~~-~~~-~~--------i~~q~~~---~ 100 (194)
+++++.|+. +++.++++++ ||+| +.+ .+ |++|+++ .
T Consensus 148 ~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~ 227 (399)
T PRK08206 148 KGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVP 227 (399)
T ss_pred CCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 999988766 3345788876 5765 332 22 9999976 6
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhC--CCceEEEEecCCcccccC----CCC----c--cccccccCCCCCc---ccccc
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKN--LEMKVYGIESVESAVLNG----GKP----G--LHLIQGIGIGIIP---TVLDI 165 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~--~~~~vigve~~~~~~~~~----~~~----~--~~~~~g~~~~~~~---~~~~~ 165 (194)
||+||+|+|+|||++|++.+|++++ +.++||+|||++++.+.. +++ . .+..+|+.++... ..+.+
T Consensus 228 pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~ 307 (399)
T PRK08206 228 PTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILR 307 (399)
T ss_pred CCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHH
Confidence 9999999999999999999999984 579999999999876532 111 1 2445666554322 12235
Q ss_pred ccCCcEEEeCCHHHHHHHHHHHHH----hcCCC
Q 038938 166 KMLDEVKTVLLCHVVTETTKRLAL----KGGLL 194 (194)
Q Consensus 166 ~~vd~~~~V~d~~e~~~a~~~la~----~eGi~ 194 (194)
+.+|+++.|+| +|+++++++|++ ++||+
T Consensus 308 ~~~d~~v~VsD-~ei~~a~r~La~~~~~~~gi~ 339 (399)
T PRK08206 308 NCADAFISCPD-EVAALGMRILANPLGGDPPIV 339 (399)
T ss_pred HhCCEEEEECH-HHHHHHHHHHhcccCCCCCee
Confidence 67999999999 999999999996 67774
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.7e-36 Score=240.41 Aligned_cols=154 Identities=37% Similarity=0.469 Sum_probs=141.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.+++.+++++|.+ ++.+ ||++||||||+|+|++|+++|++|++++|+..++.++.
T Consensus 23 ~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~~---vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~ 98 (244)
T cd00640 23 FLNPTGSFKDRGALNLILLAEEEGKL-PKGV---IIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAE 98 (244)
T ss_pred ccCCcCCcHHHHHHHHHHHHHHcCCC-CCCE---EEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 57999999999999999999998865 5556 99999999999999999999999999999998877666
Q ss_pred ------------------hhc-CCeEecCCCCCCCchH--------HHHHcCC-CCCEEEEecCCchhHHHHHHHHHhhC
Q 038938 74 ------------------SKI-PNAYLLQQHENPANPK--------IWKDSGG-KFDALVAGIRTGGTITGAEKFLKEKN 125 (194)
Q Consensus 74 ------------------~~~-~~~~~~~~~~~~~~~~--------i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~~ 125 (194)
.++ ++++++++|+|+.+++ |++|+++ .||+||+|+|+||+++|++.+|++.+
T Consensus 99 v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~ 178 (244)
T cd00640 99 VVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELL 178 (244)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhC
Confidence 233 7899999999988776 8999986 69999999999999999999999999
Q ss_pred CCceEEEEecCCcccccCCCCccccccccCCCCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 126 LEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 126 ~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
|.++||+||| +++.|+| +|+++++++|++.|||+
T Consensus 179 ~~~~ii~v~~----------------------------------~~~~v~d-~~~~~a~~~l~~~~gi~ 212 (244)
T cd00640 179 PNVKVIGVEP----------------------------------EVVTVSD-EEALEAIRLLAREEGIL 212 (244)
T ss_pred CCCEEEEEee----------------------------------eEEEECH-HHHHHHHHHHHHHcCce
Confidence 9999999998 7899999 99999999999999985
No 58
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=6.6e-36 Score=255.02 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=142.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
++|||||||||++.++|.+|++.|. .+ ||++||||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 88 ~~nPtGSfKdR~a~~~i~~a~~~g~----~~---vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~ 160 (442)
T PRK05638 88 TRNPTGSFRDRLATVAVSYGLPYAA----NG---FIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAK 160 (442)
T ss_pred CCCCCCChHHHHHHHHHHHHHHcCC----CE---EEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcE
Confidence 5799999999999999999998763 34 99999999999999999999999999999999888766
Q ss_pred ------------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCC-
Q 038938 74 ------------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNL- 126 (194)
Q Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~- 126 (194)
+++.++|++++++||.+.+ |++|++ ||+||+|+|+||+++|++.+|+++.+
T Consensus 161 vi~v~~~~~~~~~~a~~~~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~ 238 (442)
T PRK05638 161 IIRYGESVDEAIEYAEELARLNGLYNVTPEYNIIGLEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEI 238 (442)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCeEecCCCCChhHhhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhC
Confidence 3446789999999998776 899996 99999999999999999999999765
Q ss_pred -----CceEEEEecCCcccccC----CC--CccccccccCCCCCccc----c--ccccCCcEEEeCCHHHHHHHHHHHHH
Q 038938 127 -----EMKVYGIESVESAVLNG----GK--PGLHLIQGIGIGIIPTV----L--DIKMLDEVKTVLLCHVVTETTKRLAL 189 (194)
Q Consensus 127 -----~~~vigve~~~~~~~~~----~~--~~~~~~~g~~~~~~~~~----~--~~~~vd~~~~V~d~~e~~~a~~~la~ 189 (194)
.+|||+|||++++.+.. .. ...+...|+.... |.. + -++.-+.++.|+| +++.+++++|++
T Consensus 239 g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~-p~~~~~~~~~i~~~~g~~~~v~d-~~i~~a~~~l~~ 316 (442)
T PRK05638 239 GVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKN-PVMKEYVSEAIKESGGTAVVVNE-EEIMAGEKLLAK 316 (442)
T ss_pred CcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCC-CCCHHHHHHHHHHhCCEEEEECH-HHHHHHHHHHHh
Confidence 37999999998765532 11 1223334443221 111 0 1223456777888 888888877765
Q ss_pred hcCCC
Q 038938 190 KGGLL 194 (194)
Q Consensus 190 ~eGi~ 194 (194)
|||+
T Consensus 317 -eGi~ 320 (442)
T PRK05638 317 -EGIF 320 (442)
T ss_pred -cCce
Confidence 8985
No 59
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=5.7e-35 Score=245.34 Aligned_cols=184 Identities=14% Similarity=0.069 Sum_probs=140.8
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---------
Q 038938 3 LLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--------- 73 (194)
Q Consensus 3 ~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--------- 73 (194)
+|||||||||++.++|..+.+.|. .. ||++||||||+|+|++|+++|++|+||||++.+..+..
T Consensus 94 ~npTGSFKdRga~~~i~~a~~~g~----~~---Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~v 166 (398)
T TIGR03844 94 FMRTCSFKELEALPTMQRLKERGG----KT---LVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLL 166 (398)
T ss_pred cCCccccHHHHHHHHHHHHHHcCC----CE---EEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEE
Confidence 799999999999999999998873 24 99999999999999999999999999999986432221
Q ss_pred -----------------hhcCCeEecCCCCCCCchH--------HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhC---
Q 038938 74 -----------------SKIPNAYLLQQHENPANPK--------IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKN--- 125 (194)
Q Consensus 74 -----------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~--- 125 (194)
+++.+++..++++||...+ |++|++..||+||+|+|+|..+.|++.+++++.
T Consensus 167 v~v~g~~d~a~~~a~~~a~~~g~~~~~~~~~p~~ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g 246 (398)
T TIGR03844 167 VTVDGDYTDAIALADRIATLPGFVPEGGARNVARRDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDG 246 (398)
T ss_pred EECCCCHHHHHHHHHHHHHhCCccccCCCCCHHHHhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcC
Confidence 3345665555666775544 899998459999999999988999999988731
Q ss_pred ----CCceEEEEecCCcccccC----CCCc---------------cccccccCCCCCccc-----c--ccccCCcEEEeC
Q 038938 126 ----LEMKVYGIESVESAVLNG----GKPG---------------LHLIQGIGIGIIPTV-----L--DIKMLDEVKTVL 175 (194)
Q Consensus 126 ----~~~~vigve~~~~~~~~~----~~~~---------------~~~~~g~~~~~~~~~-----~--~~~~vd~~~~V~ 175 (194)
.-+++++||+++++.+.. +... .+..+++.....+.. + -++..++++.|+
T Consensus 247 ~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vs 326 (398)
T TIGR03844 247 RFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVS 326 (398)
T ss_pred CccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEEC
Confidence 236889999999876642 2111 133445533322111 1 245678999999
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 038938 176 LCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 176 d~~e~~~a~~~la~~eGi~ 194 (194)
| +|+++++++|++++||+
T Consensus 327 d-~eI~~A~~~l~~~~gi~ 344 (398)
T TIGR03844 327 N-KEAVSAGKLFEESEGID 344 (398)
T ss_pred H-HHHHHHHHHHHhhCCcc
Confidence 9 99999999999999985
No 60
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.2e-35 Score=245.39 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=144.0
Q ss_pred CCC-CCCchhhHHHHHHHHHHHHc----------------CCCCC---CCccceEEEeCCChHHHHHHHHHHHcCCcEEE
Q 038938 2 GLL-DHPSTPSRIACSMIKDAEDK----------------GSISP---GKQYNVLVEITSANAGIGLASIASSRGYKIIV 61 (194)
Q Consensus 2 ~~~-ptgS~K~R~a~~~~~~a~~~----------------g~~~~---g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~i 61 (194)
++| ||||||+|++.+.+.++.++ +.+.+ ..+ ||++|+||||+|+|++|+++|++|+|
T Consensus 46 ~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---vv~aSsGN~g~a~A~~Aa~~G~~~~I 122 (376)
T TIGR01747 46 SKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQAT---FATATDGNHGRGVAWAAQQLGQKAVV 122 (376)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCE---EEEECccHHHHHHHHHHHHcCCCEEE
Confidence 345 58999999999999987653 12111 234 99999999999999999999999999
Q ss_pred EeCCCCCHHHHh--------------------------hhcCCeEecC-----CCCC--CCchH--------HHHHcCC-
Q 038938 62 KMPNTYSIQRRM--------------------------SKIPNAYLLQ-----QHEN--PANPK--------IWKDSGG- 99 (194)
Q Consensus 62 v~p~~~~~~k~~--------------------------~~~~~~~~~~-----~~~~--~~~~~--------i~~q~~~- 99 (194)
|||+++++.|+. +++.++++.+ +|++ +..++ |++|+++
T Consensus 123 ~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~ 202 (376)
T TIGR01747 123 YMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHGWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREM 202 (376)
T ss_pred EECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCcEEeccccccccccCCchHHHHHHHHHHHHHHHhhcc
Confidence 999999988776 3345677776 4655 33222 8999963
Q ss_pred ---CCCEEEEecCCchhHHHHHHHHHhhCC--CceEEEEecCCcccccCC------C----C--ccccccccCCCCCcc-
Q 038938 100 ---KFDALVAGIRTGGTITGAEKFLKEKNL--EMKVYGIESVESAVLNGG------K----P--GLHLIQGIGIGIIPT- 161 (194)
Q Consensus 100 ---~~d~vv~~vG~GGt~~Gi~~~l~~~~~--~~~vigve~~~~~~~~~~------~----~--~~~~~~g~~~~~~~~- 161 (194)
.||+||+|+|+||+++|++.++++..+ .++||+|||++++++..+ + + ..+.++|++++....
T Consensus 203 ~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~ 282 (376)
T TIGR01747 203 GSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPI 282 (376)
T ss_pred CCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchH
Confidence 699999999999999999999987643 379999999999876432 1 1 135667777654321
Q ss_pred --ccccccCCcEEEeCCHHHHHHHHHHHHHhcC
Q 038938 162 --VLDIKMLDEVKTVLLCHVVTETTKRLALKGG 192 (194)
Q Consensus 162 --~~~~~~vd~~~~V~d~~e~~~a~~~la~~eG 192 (194)
.+-++..|+++.|+| +|+.+++++|++.+|
T Consensus 283 ~~~~~~~~~~~~v~V~D-~ei~~A~~~L~~~~g 314 (376)
T TIGR01747 283 SWEILRNCTSQFISAQD-SVAAKGMRVLGAPYG 314 (376)
T ss_pred HHHHHHhcCCEEEEcCH-HHHHHHHHHHhcccC
Confidence 123567899999999 999999999998543
No 61
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=8.9e-35 Score=239.78 Aligned_cols=184 Identities=21% Similarity=0.163 Sum_probs=140.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~~k~~------- 73 (194)
++|||||||||++.+++..+.++|. .+ ||++||||||+|+|++|+++|++|+|++|+. +++.|..
T Consensus 47 ~~nptGSfKdR~a~~~l~~a~~~g~----~~---vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA 119 (328)
T TIGR00260 47 FHNPTLSFKDRGMAVALTKALELGN----DT---VLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNA 119 (328)
T ss_pred ccCCchhhHhhhHHHHHHHHHHcCC----CE---EEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCc
Confidence 5799999999999999999998764 24 9999999999999999999999999999998 8877665
Q ss_pred -------------------hhcCCeEecCCCCC-CCchH--------HHHHcCC-CCCEEEEecCCchhHHHHHHHHHhh
Q 038938 74 -------------------SKIPNAYLLQQHEN-PANPK--------IWKDSGG-KFDALVAGIRTGGTITGAEKFLKEK 124 (194)
Q Consensus 74 -------------------~~~~~~~~~~~~~~-~~~~~--------i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~ 124 (194)
.++.++++.+.+++ |.+++ |++|+++ .||+||+|+|+||+++|++.+|+++
T Consensus 120 ~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~ 199 (328)
T TIGR00260 120 EVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRLEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK 199 (328)
T ss_pred EEEEecCCHHHHHHHHHHHHhhcCeeecccCCCCCeEeeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHH
Confidence 22233444443321 54433 8999985 7999999999999999999999985
Q ss_pred CC-----CceEEEEecCCccccc-----CCCCc-----cccccccCCCCCcccc------ccccCCcEEEeCCHHHHHHH
Q 038938 125 NL-----EMKVYGIESVESAVLN-----GGKPG-----LHLIQGIGIGIIPTVL------DIKMLDEVKTVLLCHVVTET 183 (194)
Q Consensus 125 ~~-----~~~vigve~~~~~~~~-----~~~~~-----~~~~~g~~~~~~~~~~------~~~~vd~~~~V~d~~e~~~a 183 (194)
.. .+++++|||++++.+. +++.. .+..++++.+. |.++ .+.++|+++.|+| +|++++
T Consensus 200 ~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d-~e~~~a 277 (328)
T TIGR00260 200 KEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSD-EEILEA 277 (328)
T ss_pred HhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCH-HHHHHH
Confidence 10 2399999999984332 22111 23344544332 2221 2357899999999 999999
Q ss_pred HHHHHHhcCCC
Q 038938 184 TKRLALKGGLL 194 (194)
Q Consensus 184 ~~~la~~eGi~ 194 (194)
+++|+++|||+
T Consensus 278 ~~~l~~~~gi~ 288 (328)
T TIGR00260 278 IKLLAREEGYF 288 (328)
T ss_pred HHHHHHhcCee
Confidence 99999999985
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.7e-34 Score=242.43 Aligned_cols=187 Identities=16% Similarity=0.060 Sum_probs=139.0
Q ss_pred CCC-CCCchhhHHHHHHHHHHHH--cCC--------------CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 2 GLL-DHPSTPSRIACSMIKDAED--KGS--------------ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 2 ~~~-ptgS~K~R~a~~~~~~a~~--~g~--------------~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
++| ||||||+||+.+.+..+.+ .|. ..+....+.||++|+||||+|+|++|+++|++|+||||
T Consensus 65 ~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP 144 (396)
T TIGR03528 65 SYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMP 144 (396)
T ss_pred CCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEe
Confidence 356 5999999999999998633 221 00000001399999999999999999999999999999
Q ss_pred CCCCHHHHh--------------------------hhcCCeEecC-----CCCC--CCchH--------HHHHcC----C
Q 038938 65 NTYSIQRRM--------------------------SKIPNAYLLQ-----QHEN--PANPK--------IWKDSG----G 99 (194)
Q Consensus 65 ~~~~~~k~~--------------------------~~~~~~~~~~-----~~~~--~~~~~--------i~~q~~----~ 99 (194)
+++++.|.. +++.++++++ +|+| +..++ |++|++ .
T Consensus 145 ~~~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~ 224 (396)
T TIGR03528 145 KGSAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENGWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVE 224 (396)
T ss_pred CCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCC
Confidence 999988776 3446788875 5665 22222 899987 3
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhh-CCC-ceEEEEecCCcccccCC------C------CccccccccCCCCCccc---
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEK-NLE-MKVYGIESVESAVLNGG------K------PGLHLIQGIGIGIIPTV--- 162 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~-~~~-~~vigve~~~~~~~~~~------~------~~~~~~~g~~~~~~~~~--- 162 (194)
.||+||+|+|+||+++|++.++++. .+. ++||+|||++++++..+ + ...+..+|++++.....
T Consensus 225 ~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~ 304 (396)
T TIGR03528 225 KPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWE 304 (396)
T ss_pred CCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHH
Confidence 6999999999999999999999654 344 59999999998766431 1 11234566655432221
Q ss_pred cccccCCcEEEeCCHHHHHHHHHHHHH
Q 038938 163 LDIKMLDEVKTVLLCHVVTETTKRLAL 189 (194)
Q Consensus 163 ~~~~~vd~~~~V~d~~e~~~a~~~la~ 189 (194)
+.++++|+++.|+| +|+++++++|++
T Consensus 305 ~~~~~~d~~v~VsD-~ei~~a~r~La~ 330 (396)
T TIGR03528 305 ILRDYASQFISCPD-WVAAKGMRILGN 330 (396)
T ss_pred HHHHhCCeEEEECH-HHHHHHHHHHhc
Confidence 23567999999999 999999999987
No 63
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=7.9e-34 Score=239.55 Aligned_cols=186 Identities=16% Similarity=0.111 Sum_probs=138.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHh-----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTY---SIQRRM----- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~---~~~k~~----- 73 (194)
++|||||||||++.+++.+++++|.. + .++++|+||||+|+|++|+++|++|+||||+.. ++.|+.
T Consensus 93 ~~nPtGS~K~R~A~~~~~~a~~~G~~----~--~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~ 166 (419)
T TIGR01415 93 SVSPTGSHKINTAIAQAYYAKIEGAK----R--LVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELY 166 (419)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHcCCC----e--EEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHc
Confidence 57999999999999999999998842 2 144679999999999999999999999999854 233332
Q ss_pred ----------------------------------------hhcC-CeEecCCCCCCCch-------HHHHHcCC---CCC
Q 038938 74 ----------------------------------------SKIP-NAYLLQQHENPANP-------KIWKDSGG---KFD 102 (194)
Q Consensus 74 ----------------------------------------~~~~-~~~~~~~~~~~~~~-------~i~~q~~~---~~d 102 (194)
.+.. ..|++.++.|+... +|++|++. .||
T Consensus 167 GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~~~~h~~~ig~Ei~~Ql~~~g~~pD 246 (419)
T TIGR01415 167 GAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNHVLLHQTVIGLEAKKQMEEAGEDPD 246 (419)
T ss_pred CCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0112 34566665553211 18999864 599
Q ss_pred EEEEecCCchhHHHHHHHHHhh----CCCceEEEEecCCcccccCCCC-----------ccccccccCCCCCcccc----
Q 038938 103 ALVAGIRTGGTITGAEKFLKEK----NLEMKVYGIESVESAVLNGGKP-----------GLHLIQGIGIGIIPTVL---- 163 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~~----~~~~~vigve~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~---- 163 (194)
+||+|+|+||+++|++.+|++. .+++|||+|||++++.++++.. ....+.+++.++.+...
T Consensus 247 ~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~g 326 (419)
T TIGR01415 247 VIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGG 326 (419)
T ss_pred EEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccc
Confidence 9999999999999999888432 3589999999999987765421 01233455554443321
Q ss_pred -------------ccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 164 -------------DIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 164 -------------~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.+..+++++.|+| +|+++++++|++.|||+
T Consensus 327 l~~~~~~~~~~~l~~~~~~~~~~V~d-~e~~~a~r~la~~eGi~ 369 (419)
T TIGR01415 327 LRYHGVAPTLSLLVNLGIVEARAYDQ-EEAFEAAVIFAKTEGIV 369 (419)
T ss_pred cccCCccHHHHHHhhcCceEEEEECH-HHHHHHHHHHHHhcCCc
Confidence 1233457899999 99999999999999986
No 64
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.6e-34 Score=236.27 Aligned_cols=185 Identities=19% Similarity=0.140 Sum_probs=144.0
Q ss_pred CCCCC---CchhhHHHHHHHHHHHHcCCCCCCCccceEEEe--CCChHHHHHHHHHHHcCCcEEEEeCCCCCH-------
Q 038938 2 GLLDH---PSTPSRIACSMIKDAEDKGSISPGKQYNVLVEI--TSANAGIGLASIASSRGYKIIVKMPNTYSI------- 69 (194)
Q Consensus 2 ~~~pt---gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~a--SsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~------- 69 (194)
++||+ ||+|||++.+++.+++++|. .+ ||++ |+||||+|+|++|+++|++|+||||++.+.
T Consensus 25 ~~np~gsfgs~K~R~~~~~l~~a~~~g~----~~---vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~ 97 (307)
T cd06449 25 DCNSGLAFGGNKIRKLEYLLPDALAKGA----DT---LVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDR 97 (307)
T ss_pred cccCCCCccchHHHHHHHHHHHHHHcCC----CE---EEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccc
Confidence 47999 56699999999999998875 24 8888 699999999999999999999999988762
Q ss_pred -HHHh-------------------------------hhcCC--eEecCCCC-CCCchH--------HHHHcCC---CCCE
Q 038938 70 -QRRM-------------------------------SKIPN--AYLLQQHE-NPANPK--------IWKDSGG---KFDA 103 (194)
Q Consensus 70 -~k~~-------------------------------~~~~~--~~~~~~~~-~~~~~~--------i~~q~~~---~~d~ 103 (194)
.+.. .++.+ +++++++. |+.+.+ |++|+++ +||+
T Consensus 98 ~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~~~~~~d~ 177 (307)
T cd06449 98 VGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEELGFKFDS 177 (307)
T ss_pred cccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 2222 11222 44566764 887766 8899864 6999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcccccCCCCc---cccccccC--CCCCccccccccCCcEEEeCCHH
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPG---LHLIQGIG--IGIIPTVLDIKMLDEVKTVLLCH 178 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~~~~---~~~~~g~~--~~~~~~~~~~~~vd~~~~V~d~~ 178 (194)
||+|+|+|||++|++.+|++++|++|||+|||++++.+...... ...+.+.+ ....+..+..+++|+.+.|+| +
T Consensus 178 vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d-~ 256 (307)
T cd06449 178 IVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPN-D 256 (307)
T ss_pred EEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCC-H
Confidence 99999999999999999999999999999999998655422100 01222222 222344456788999999999 9
Q ss_pred HHHHHHHHHHHhcCCC
Q 038938 179 VVTETTKRLALKGGLL 194 (194)
Q Consensus 179 e~~~a~~~la~~eGi~ 194 (194)
|+++++++|++++||+
T Consensus 257 e~~~a~~~la~~~Gi~ 272 (307)
T cd06449 257 ETIEAIKLCARLEGII 272 (307)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999999986
No 65
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.3e-34 Score=234.79 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=141.8
Q ss_pred CCCCC--CchhhHHHHHHHHHHHHcCCCCCCCccceEEEe--CCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHH---h
Q 038938 2 GLLDH--PSTPSRIACSMIKDAEDKGSISPGKQYNVLVEI--TSANAGIGLASIASSRGYKIIVKMPNTYS-IQRR---M 73 (194)
Q Consensus 2 ~~~pt--gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~a--SsGN~g~a~A~~a~~~Gl~~~iv~p~~~~-~~k~---~ 73 (194)
.+||| ||||||++.+++.+++++|. ++ ||++ |+||||+|+|++|+++|++++||||+..+ ..+. .
T Consensus 30 ~l~p~~~gs~K~R~~~~~l~~a~~~g~----~~---vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~ 102 (311)
T TIGR01275 30 DLTGLGIGGNKIRKLEYLLADALSKGA----DT---VITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDK 102 (311)
T ss_pred cCcCCCCCchhHHHHHHHHHHHHHcCC----CE---EEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHH
Confidence 47998 99999999999999998874 34 8998 66999999999999999999999998642 1111 1
Q ss_pred ------------------------hh----c--CCeEecCCCCCCCchH--------HHHHcCC--CCCEEEEecCCchh
Q 038938 74 ------------------------SK----I--PNAYLLQQHENPANPK--------IWKDSGG--KFDALVAGIRTGGT 113 (194)
Q Consensus 74 ------------------------~~----~--~~~~~~~~~~~~~~~~--------i~~q~~~--~~d~vv~~vG~GGt 113 (194)
.+ . +.+++++++.|+.+.. |++|+++ .||+||+|+|||||
T Consensus 103 ~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt 182 (311)
T TIGR01275 103 LMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGT 182 (311)
T ss_pred HcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHH
Confidence 11 1 2356778888887664 8999864 69999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCcccccCC---CCccccccccCCCC-CccccccccCCcEEEeCCHHHHHHHHHHHHH
Q 038938 114 ITGAEKFLKEKNLEMKVYGIESVESAVLNGG---KPGLHLIQGIGIGI-IPTVLDIKMLDEVKTVLLCHVVTETTKRLAL 189 (194)
Q Consensus 114 ~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~---~~~~~~~~g~~~~~-~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~ 189 (194)
++|++++||+++|+++||||||+.+...... ...++..++++... .......++.++.+.|+| +|+++++++|++
T Consensus 183 ~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d-~e~~~~~~~la~ 261 (311)
T TIGR01275 183 IAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPT-SEVAEIVKKVAS 261 (311)
T ss_pred HHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCC-HHHHHHHHHHHH
Confidence 9999999999999999999998765211110 01122345554431 112223556788999999 999999999999
Q ss_pred hcCCC
Q 038938 190 KGGLL 194 (194)
Q Consensus 190 ~eGi~ 194 (194)
++||+
T Consensus 262 ~~gi~ 266 (311)
T TIGR01275 262 REGII 266 (311)
T ss_pred HhCCc
Confidence 99985
No 66
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.6e-33 Score=232.95 Aligned_cols=185 Identities=18% Similarity=0.118 Sum_probs=134.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHh-----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI---QRRM----- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~---~k~~----- 73 (194)
++|||||||||.+.+++..+.++|. ... ++++||||||+|+|++|+++|++|+||||+..+. .+..
T Consensus 58 ~~nptgS~K~R~a~~~~~~a~~~g~---~~v---v~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~ 131 (365)
T cd06446 58 DLNHTGAHKINNALGQALLAKRMGK---KRV---IAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELL 131 (365)
T ss_pred cCCCccchhHHHHHHHHHHHHHcCC---CeE---EEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHC
Confidence 4799999999999999999988874 222 5557999999999999999999999999986432 1111
Q ss_pred -------------------------hhc--CCeEecCCCC--CCC--ch---------HHHHHcCC----CCCEEEEecC
Q 038938 74 -------------------------SKI--PNAYLLQQHE--NPA--NP---------KIWKDSGG----KFDALVAGIR 109 (194)
Q Consensus 74 -------------------------~~~--~~~~~~~~~~--~~~--~~---------~i~~q~~~----~~d~vv~~vG 109 (194)
.+. ..+|++.++. ++. ++ +|++|+++ .||+||+|+|
T Consensus 132 GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG 211 (365)
T cd06446 132 GAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVG 211 (365)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 111 1244444432 222 21 28999863 6999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCcccccCC--------CC--------------------ccccccccCCCC-Cc
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGG--------KP--------------------GLHLIQGIGIGI-IP 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~--------~~--------------------~~~~~~g~~~~~-~~ 160 (194)
+|||++|++.++++ .++++||+|||++++.+.+. .. ..+..+|++... .+
T Consensus 212 ~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~ 290 (365)
T cd06446 212 GGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGP 290 (365)
T ss_pred ccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCH
Confidence 99999999998876 56999999999998766421 00 011223343221 11
Q ss_pred cc--cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 TV--LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 ~~--~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.. +...++|+++.|+| +|+++++++|+++|||+
T Consensus 291 ~~~~~~~~~~d~~v~V~d-~e~~~a~r~la~~eGi~ 325 (365)
T cd06446 291 EHAYLKDSGRVEYVAVTD-EEALEAFKLLARTEGII 325 (365)
T ss_pred HHHHHHHhCCceEEEeCh-HHHHHHHHHHHHhcCce
Confidence 11 23567899999999 99999999999999986
No 67
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5e-33 Score=233.06 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=131.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH-H--Hh-----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQ-R--RM----- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~-k--~~----- 73 (194)
.+|||||||+|.+..++..|+++|. +.. |+++|+||||+|+|++|+++|++|+||||+..+.. + ..
T Consensus 86 dlnptGS~K~r~al~~~l~A~~~G~---~~v---I~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~ 159 (402)
T PRK13028 86 DLNHTGAHKINNCLGQALLAKRMGK---KRL---IAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLL 159 (402)
T ss_pred CCCCCcchHHHHHHHHHHHHHHcCC---CeE---EEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHc
Confidence 4799999999999999999998873 223 67899999999999999999999999999863331 1 11
Q ss_pred -------------------------hhc-CCeEec-CCCC--C--CCch---------HHHHHc----CCCCCEEEEecC
Q 038938 74 -------------------------SKI-PNAYLL-QQHE--N--PANP---------KIWKDS----GGKFDALVAGIR 109 (194)
Q Consensus 74 -------------------------~~~-~~~~~~-~~~~--~--~~~~---------~i~~q~----~~~~d~vv~~vG 109 (194)
.++ .+.+|+ .+.. + |.+. ++.+|+ +..||+||+|+|
T Consensus 160 GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VG 239 (402)
T PRK13028 160 GAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVG 239 (402)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcC
Confidence 111 233343 2221 1 2111 155564 446999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCC--------cccccCCCCc--------------------cccccccCCCCC-c
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVE--------SAVLNGGKPG--------------------LHLIQGIGIGII-P 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~--------~~~~~~~~~~--------------------~~~~~g~~~~~~-~ 160 (194)
+||+++|++.+|++ +|+++||||||.+ +.++..+..+ .++..|+..... |
T Consensus 240 gGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp 318 (402)
T PRK13028 240 GGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGP 318 (402)
T ss_pred chHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCH
Confidence 99999999999986 5899999999988 5555433221 112233332211 2
Q ss_pred cc--cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 TV--LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 ~~--~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.. +.....|+++.|+| +|+++++++|++.|||+
T Consensus 319 ~~~~l~~~~~~~~v~VtD-~eal~a~~~La~~eGIi 353 (402)
T PRK13028 319 EHAYLKDIGRVEYVTATD-EEALDAFFLLSRTEGII 353 (402)
T ss_pred HHHHHHHhcCcEEEEECH-HHHHHHHHHHHHhcCCe
Confidence 22 22345688999999 99999999999999986
No 68
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=8.4e-33 Score=233.64 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=135.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEE-EeCCChHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHh----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLV-EITSANAGIGLASIASSRGYKIIVKMPNTY---SIQRRM---- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv-~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~---~~~k~~---- 73 (194)
++|||||||+|+|..++..++++|.. + ++ ++|+||||+|+|++|+++|++|+||||+.. ++.|+.
T Consensus 102 ~~nPtGS~K~R~A~~~a~~a~~~G~~----~---~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~ 174 (427)
T PRK12391 102 GVSPTGSHKPNTAVAQAYYNKKEGIK----R---LTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMET 174 (427)
T ss_pred CCCCCCChHHHHHHHHHHHHHHCCCC----E---EEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHH
Confidence 57999999999999999999998852 3 55 578999999999999999999999999743 333332
Q ss_pred -----------------------------------------hhcCC-eEecCCCCCCCc-------hHHHHHcC---CCC
Q 038938 74 -----------------------------------------SKIPN-AYLLQQHENPAN-------PKIWKDSG---GKF 101 (194)
Q Consensus 74 -----------------------------------------~~~~~-~~~~~~~~~~~~-------~~i~~q~~---~~~ 101 (194)
.+.++ +|++....|... .+|++|++ ..|
T Consensus 175 ~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~~~~~~~~ig~Ei~~Ql~~~g~~p 254 (427)
T PRK12391 175 YGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNHVLLHQTVIGLEAKKQLELAGEYP 254 (427)
T ss_pred CCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcHHHhhHHHHHHHHHHHHHhcCCCC
Confidence 01123 333333222211 11889986 469
Q ss_pred CEEEEecCCchhHHHHHHHHHh---hC-CCceEEEEecCCcccccCCCC--------c--c-ccccccCCCCCccccc--
Q 038938 102 DALVAGIRTGGTITGAEKFLKE---KN-LEMKVYGIESVESAVLNGGKP--------G--L-HLIQGIGIGIIPTVLD-- 164 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~---~~-~~~~vigve~~~~~~~~~~~~--------~--~-~~~~g~~~~~~~~~~~-- 164 (194)
|+||+|+|+||+++|++.+|.+ .+ +++|||+|||++++.++++.. + + ..+.+++.++.+..+.
T Consensus 255 D~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~ 334 (427)
T PRK12391 255 DVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAG 334 (427)
T ss_pred CEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCcccccc
Confidence 9999999999999999987743 24 889999999999988765411 1 1 2345666555443321
Q ss_pred ---------------cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 165 ---------------IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 165 ---------------~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
...+.+.+.|+| +|+++++++|++.|||+
T Consensus 335 gl~~~g~~~~~~~l~~~~~~~~~~V~d-~e~~~a~~~~a~~eGi~ 378 (427)
T PRK12391 335 GLRYHGMAPLVSLLVHEGLIEARAYPQ-TEVFEAAVLFARTEGIV 378 (427)
T ss_pred ccccCCchHHHHHHHhcCceEEEEECH-HHHHHHHHHHHHHcCCe
Confidence 122348899999 99999999999999986
No 69
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=4.6e-33 Score=232.94 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=130.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTY-SIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~-~~~k~~------- 73 (194)
.+|||||||+|++..++..|+++|+ ... |+++|+||||+|+|++|+++|++|+||||+.. +..+.+
T Consensus 82 dlnptGS~K~r~al~~~l~A~~~Gk---~~v---IaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~l 155 (397)
T PRK04346 82 DLNHTGAHKINNVLGQALLAKRMGK---KRI---IAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLL 155 (397)
T ss_pred CCCCccchHHHHHHHHHHHHHHcCC---CeE---EEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHC
Confidence 5899999999999999999999874 223 77799999999999999999999999999863 221111
Q ss_pred --------------------------hhcCC-eEecCCCCCC--C--c---------hHHHHHcC----CCCCEEEEecC
Q 038938 74 --------------------------SKIPN-AYLLQQHENP--A--N---------PKIWKDSG----GKFDALVAGIR 109 (194)
Q Consensus 74 --------------------------~~~~~-~~~~~~~~~~--~--~---------~~i~~q~~----~~~d~vv~~vG 109 (194)
.+..+ +|++.++.+| . + .+|++|+. ..||+||+|+|
T Consensus 156 GA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VG 235 (397)
T PRK04346 156 GAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVG 235 (397)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 11122 3443333222 1 1 12777763 36999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCccc--------ccCCCCc--------------------cccccccCCCCC-c
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAV--------LNGGKPG--------------------LHLIQGIGIGII-P 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~--------~~~~~~~--------------------~~~~~g~~~~~~-~ 160 (194)
+||+++|++.+|++ +|+++||||||.++.. +..++++ .....|+....+ |
T Consensus 236 gGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp 314 (397)
T PRK04346 236 GGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGP 314 (397)
T ss_pred ccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCH
Confidence 99999999999975 8999999999998632 2111111 011122222111 1
Q ss_pred cc--cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 TV--LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 ~~--~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.. +.....++++.|+| +|+++++++|++.|||+
T Consensus 315 ~~~~l~~~~~~~~v~VtD-~eal~a~~~L~~~eGIi 349 (397)
T PRK04346 315 EHAYLKDIGRAEYVSITD-DEALEAFQLLSRLEGII 349 (397)
T ss_pred HHHHHHhcCCeEEEEECH-HHHHHHHHHHHHHcCCE
Confidence 11 23445678999999 99999999999999985
No 70
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.1e-33 Score=230.63 Aligned_cols=181 Identities=31% Similarity=0.406 Sum_probs=142.0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
.+|||||||||++.+++.+++++|. .+ |+++|+||||.|+|++|+++|++|++++|+++++.+..
T Consensus 32 ~~~ptgs~K~R~a~~~l~~a~~~~~----~~---vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 104 (306)
T PF00291_consen 32 DLNPTGSFKDRGAYYLLSRAKEKGG----RT---VVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAE 104 (306)
T ss_dssp GGSTTSBTHHHHHHHHHHHHHHTTT----SE---EEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCE
T ss_pred CCCCcCCcccccchhhhhhcccccc----ce---eeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecce
Confidence 4689999999999999999988753 34 99999999999999999999999999999998876655
Q ss_pred ------------------hh--------cCCeEecCCCCCCCchH--------HHHHcCCCCCE--EEEecCCchhHHHH
Q 038938 74 ------------------SK--------IPNAYLLQQHENPANPK--------IWKDSGGKFDA--LVAGIRTGGTITGA 117 (194)
Q Consensus 74 ------------------~~--------~~~~~~~~~~~~~~~~~--------i~~q~~~~~d~--vv~~vG~GGt~~Gi 117 (194)
.+ .++. ++||+++.... |++|+. .||. ||+|+|+||+++|+
T Consensus 105 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi 181 (306)
T PF00291_consen 105 VILVPGDVEGAFDDAQELAKERAELLSPFNGE--LNQYNNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGI 181 (306)
T ss_dssp EEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHH
T ss_pred EEEccccccccccccccccccccccccccccc--cCcccchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHH
Confidence 11 0111 44553443332 889998 7766 99999999999999
Q ss_pred HHHHHh--hCCCceEEEEecCCcccccC----CCC----ccccccccCCCC-Cccc----cccccCCcEEEeCCHHHHHH
Q 038938 118 EKFLKE--KNLEMKVYGIESVESAVLNG----GKP----GLHLIQGIGIGI-IPTV----LDIKMLDEVKTVLLCHVVTE 182 (194)
Q Consensus 118 ~~~l~~--~~~~~~vigve~~~~~~~~~----~~~----~~~~~~g~~~~~-~~~~----~~~~~vd~~~~V~d~~e~~~ 182 (194)
+.++++ . |+++||+|||.+++.+.. +.. ..+.+.|++.+. .+.. +.++++++++.|+| +|+++
T Consensus 182 ~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d-~e~~~ 259 (306)
T PF00291_consen 182 AAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSD-EEALE 259 (306)
T ss_dssp HHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEH-HHHHH
T ss_pred Hhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccch-HHHHH
Confidence 999999 7 999999999999876642 221 224556877665 1222 23456778899999 99999
Q ss_pred HHHHHHHhcCCC
Q 038938 183 TTKRLALKGGLL 194 (194)
Q Consensus 183 a~~~la~~eGi~ 194 (194)
++++|++.|||+
T Consensus 260 a~~~l~~~~gi~ 271 (306)
T PF00291_consen 260 AIRELAEREGIL 271 (306)
T ss_dssp HHHHHHHHHSB-
T ss_pred HHHHHHHHcCcE
Confidence 999999999985
No 71
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.2e-32 Score=230.99 Aligned_cols=185 Identities=21% Similarity=0.240 Sum_probs=129.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HH-----Hh--
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI-QR-----RM-- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~-~k-----~~-- 73 (194)
.+|||||||+|.+...+..|++.|. +.. |+++|+||||.|+|++|+++|++|+||||+.... .+ .+
T Consensus 95 ~lnptGS~K~R~a~~~~l~A~~~g~---~~v---IaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~l 168 (410)
T PLN02618 95 DLNHTGAHKINNAVAQALLAKRLGK---KRI---IAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLL 168 (410)
T ss_pred CCCCccchHHHHHHHHHHHHHHcCC---CEE---EEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHC
Confidence 4799999999999999998888763 222 5577799999999999999999999999986321 11 01
Q ss_pred --------------------------hh-cCCeEecCCCCC--CCch-----------HHHHH----cCCCCCEEEEecC
Q 038938 74 --------------------------SK-IPNAYLLQQHEN--PANP-----------KIWKD----SGGKFDALVAGIR 109 (194)
Q Consensus 74 --------------------------~~-~~~~~~~~~~~~--~~~~-----------~i~~q----~~~~~d~vv~~vG 109 (194)
.+ +..+|++.+..+ |... +|.+| .+..||+||+|+|
T Consensus 169 GA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VG 248 (410)
T PLN02618 169 GAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVG 248 (410)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 11 223444443322 2211 15444 4457999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCcc--------cccCCCCc--------------------cccccccCCCCC-c
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESA--------VLNGGKPG--------------------LHLIQGIGIGII-P 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~--------~~~~~~~~--------------------~~~~~g~~~~~~-~ 160 (194)
+||+++|++.+|++ +|+++||||||+++. .+..++++ .+...|+..... +
T Consensus 249 gGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp 327 (410)
T PLN02618 249 GGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGP 327 (410)
T ss_pred chHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcH
Confidence 99999999999975 799999999999862 22222110 011223322111 1
Q ss_pred --cccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 --TVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 --~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
..+....+|+++.|+| +|+++++++|++.|||+
T Consensus 328 ~~~~l~~~~~~~~v~VtD-~Eal~a~~~La~~eGIi 362 (410)
T PLN02618 328 EHSFLKDTGRAEYYSVTD-EEALEAFQRLSRLEGII 362 (410)
T ss_pred HHHHHHhhcCcEEEEECH-HHHHHHHHHHHHHcCce
Confidence 1233446889999999 99999999999999986
No 72
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=7.6e-33 Score=232.24 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=131.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHh-----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSI--QRRM----- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~--~k~~----- 73 (194)
++|||||||||++.+++..+++.|. +.. ++++||||||+|+|++|+++|++|+||||+. .+. .+..
T Consensus 74 ~~nptGS~K~R~a~~~~~~a~~~g~---~~v---i~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~ 147 (385)
T TIGR00263 74 DLNHTGAHKINNALGQALLAKRMGK---KRI---IAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELL 147 (385)
T ss_pred CCCCCccchHHHHHHHHHHHHHcCC---CEE---EEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHc
Confidence 4799999999999999999888763 223 6689999999999999999999999999975 332 1111
Q ss_pred --------------------------hhcCCeEec-CCCCCC----Cch---------HHHHHcC----CCCCEEEEecC
Q 038938 74 --------------------------SKIPNAYLL-QQHENP----ANP---------KIWKDSG----GKFDALVAGIR 109 (194)
Q Consensus 74 --------------------------~~~~~~~~~-~~~~~~----~~~---------~i~~q~~----~~~d~vv~~vG 109 (194)
.+.++.+|+ .++.++ .++ +|++|+. ..||+||+|+|
T Consensus 148 GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG 227 (385)
T TIGR00263 148 GAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVG 227 (385)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeC
Confidence 111333343 444422 222 2899973 25899999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCccc--------ccCCCCc--------------------cccccccCCCCC-c
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAV--------LNGGKPG--------------------LHLIQGIGIGII-P 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~--------~~~~~~~--------------------~~~~~g~~~~~~-~ 160 (194)
+|||++|++.++.+ .|+++||+|||+++.. +..+... .+...|+..... +
T Consensus 228 ~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p 306 (385)
T TIGR00263 228 GGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGP 306 (385)
T ss_pred chHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCH
Confidence 99999999998854 6999999999998531 2222110 011223322211 1
Q ss_pred ccc--ccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 TVL--DIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 ~~~--~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
..+ ....+|+++.|+| +|+++++++|+++|||+
T Consensus 307 ~~~~~~~~~~~~~v~Vsd-~e~~~a~~~la~~egi~ 341 (385)
T TIGR00263 307 EHAYLHETGRATYEAITD-DEALEAFKLLSRNEGII 341 (385)
T ss_pred HHHHHHhcCCeEEEEECH-HHHHHHHHHHHHhcCCe
Confidence 122 2345788999999 99999999999999986
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.4e-33 Score=230.54 Aligned_cols=185 Identities=21% Similarity=0.180 Sum_probs=143.0
Q ss_pred CCCCC--CchhhHHHHHHHHHHHHcCCCCCCCccceEEEeC--CChHHHHHHHHHHHcCCcEEEEeCCCCCHHHH-----
Q 038938 2 GLLDH--PSTPSRIACSMIKDAEDKGSISPGKQYNVLVEIT--SANAGIGLASIASSRGYKIIVKMPNTYSIQRR----- 72 (194)
Q Consensus 2 ~~~pt--gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aS--sGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~----- 72 (194)
.+||+ ||||||++..++.+++++|. ++ ||++| +||||+|+|++|+.+|++|+||||+..+..+.
T Consensus 38 ~lnp~g~gs~K~R~~~~~l~~a~~~g~----~~---vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~ 110 (331)
T PRK03910 38 DLTGLALGGNKTRKLEFLLADALAQGA----DT---LITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLAN 110 (331)
T ss_pred cCCCCCCCchHHHHHHHHHHHHHHcCC----CE---EEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCC
Confidence 47897 59999999999999998874 34 88764 58999999999999999999999998774321
Q ss_pred ---h-----------------------------hhc-C-CeEecCCCCCCCchH--------HHHHcCC---CCCEEEEe
Q 038938 73 ---M-----------------------------SKI-P-NAYLLQQHENPANPK--------IWKDSGG---KFDALVAG 107 (194)
Q Consensus 73 ---~-----------------------------~~~-~-~~~~~~~~~~~~~~~--------i~~q~~~---~~d~vv~~ 107 (194)
. .++ + .+++++|+.|+.+.+ |++|+++ +||+||+|
T Consensus 111 ~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~ 190 (331)
T PRK03910 111 GNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQLAEGGVDFDAVVVA 190 (331)
T ss_pred CcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 1 111 1 345677888887655 8999863 69999999
Q ss_pred cCCchhHHHHHHHHHhhCCCceEEEEecCCcccccCCCC---ccccccccCCC--CCc--cccccccCCcEEEeCCHHHH
Q 038938 108 IRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKP---GLHLIQGIGIG--IIP--TVLDIKMLDEVKTVLLCHVV 180 (194)
Q Consensus 108 vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~~~---~~~~~~g~~~~--~~~--~~~~~~~vd~~~~V~d~~e~ 180 (194)
+|||||++|++.+|++++|+++||||||++++.+..... .....++++.+ ..+ ..+.++++|+.+.|+| +|+
T Consensus 191 vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d-~e~ 269 (331)
T PRK03910 191 SGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPT-DEM 269 (331)
T ss_pred CCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCC-HHH
Confidence 999999999999999999999999999998765432211 01122333322 111 1245678999999999 999
Q ss_pred HHHHHHHHHhcCCC
Q 038938 181 TETTKRLALKGGLL 194 (194)
Q Consensus 181 ~~a~~~la~~eGi~ 194 (194)
++++++|++++||+
T Consensus 270 ~~~~~~l~~~~gi~ 283 (331)
T PRK03910 270 LEAVKLLARTEGIL 283 (331)
T ss_pred HHHHHHHHHHcCCc
Confidence 99999999999985
No 74
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-32 Score=240.21 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=133.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHh-----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTY---SIQRRM----- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~---~~~k~~----- 73 (194)
.+|||||||||++.+++..+++.|.. .. ++++|+||||+|+|++|+++|++|+||||+.. +..+..
T Consensus 355 ~lNpTGS~KdR~Al~~i~~A~~~G~~---~~---IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~l 428 (695)
T PRK13802 355 DLNHTGAHKINNALGQALLVKRMGKT---RV---IAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRML 428 (695)
T ss_pred cCCCcCCcHHHHHHHHHHHHHHcCCC---CE---EEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHc
Confidence 47999999999999999999998852 34 89999999999999999999999999999853 222222
Q ss_pred --------------------------hhcC-CeEecCCCCCCCc----hH---------HHHHcCC-----CCCEEEEec
Q 038938 74 --------------------------SKIP-NAYLLQQHENPAN----PK---------IWKDSGG-----KFDALVAGI 108 (194)
Q Consensus 74 --------------------------~~~~-~~~~~~~~~~~~~----~~---------i~~q~~~-----~~d~vv~~v 108 (194)
.+.+ .+|++.++.|+.. .. |++|+.+ .||+||+|+
T Consensus 429 GAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~V 508 (695)
T PRK13802 429 GAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACV 508 (695)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcC
Confidence 1112 3567778765422 21 8999853 699999999
Q ss_pred CCchhHHHHHHHHHhhCCCceEEEEecCCcccccCCCC-------cc-----------------------ccccccCC-C
Q 038938 109 RTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKP-------GL-----------------------HLIQGIGI-G 157 (194)
Q Consensus 109 G~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~~~-------~~-----------------------~~~~g~~~-~ 157 (194)
|+||+++|++.+|++ +|++|||||||.++....+... +. ....|+-. +
T Consensus 509 GgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~g 587 (695)
T PRK13802 509 GGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYAS 587 (695)
T ss_pred CchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCC
Confidence 999999999999976 6999999999998643221100 00 00001100 0
Q ss_pred CCccccccccCCcE--EEeCCHHHHHHHHHHHHHhcCCC
Q 038938 158 IIPTVLDIKMLDEV--KTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 158 ~~~~~~~~~~vd~~--~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.-|..-....++.+ +.|+| +|++++.++|++.|||+
T Consensus 588 vgp~~~~l~~~~rv~~~~vtD-~eal~a~~~La~~EGIi 625 (695)
T PRK13802 588 VGPEHAWLKDIGRVNYSWATD-EEAMNAFKDLCETEGII 625 (695)
T ss_pred CCchhHHHHhcCCeEEEEECH-HHHHHHHHHHHHHcCcc
Confidence 00111111224555 89999 99999999999999996
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.98 E-value=8.9e-32 Score=222.64 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=137.0
Q ss_pred CCCCC---CchhhHHHHHHHHHHHHcCCCCCCCccceEEEe--CCChHHHHHHHHHHHcCCcEEEEeCCCCCHH------
Q 038938 2 GLLDH---PSTPSRIACSMIKDAEDKGSISPGKQYNVLVEI--TSANAGIGLASIASSRGYKIIVKMPNTYSIQ------ 70 (194)
Q Consensus 2 ~~~pt---gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~a--SsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~------ 70 (194)
++||+ ||+|||.+..++.+++++|. .+ |+++ |+||||+|+|++|+++|++|+||++..+|..
T Consensus 40 ~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~---vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~ 112 (337)
T PRK12390 40 DCNSGLAFGGNKTRKLEYLVPDALAQGA----DT---LVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDR 112 (337)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHcCC----CE---EEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhc
Confidence 46887 77799999999999999885 34 8888 8999999999999999999999987654421
Q ss_pred --HHh-------------------------------hhcCC-eEecCCCCCCCc----------hHHHHH---cCCCCCE
Q 038938 71 --RRM-------------------------------SKIPN-AYLLQQHENPAN----------PKIWKD---SGGKFDA 103 (194)
Q Consensus 71 --k~~-------------------------------~~~~~-~~~~~~~~~~~~----------~~i~~q---~~~~~d~ 103 (194)
+.. .+..+ .|....+.+... .+|++| ++.+||+
T Consensus 113 ~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~ 192 (337)
T PRK12390 113 VGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDY 192 (337)
T ss_pred cccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCE
Confidence 111 11122 222333322211 128887 5557999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcccccCCC---CccccccccCCCC--Ccc--ccccccCCcEEEeCC
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGK---PGLHLIQGIGIGI--IPT--VLDIKMLDEVKTVLL 176 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~~---~~~~~~~g~~~~~--~~~--~~~~~~vd~~~~V~d 176 (194)
||+|+|+|||++|++.+||+.+|++|||+|||++++.+...+ ...+.+++++.+. .+. .+..+++|+.|.|+|
T Consensus 193 vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd 272 (337)
T PRK12390 193 IVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPN 272 (337)
T ss_pred EEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCC
Confidence 999999999999999999999999999999999986654321 1123334444332 222 245678999999999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 038938 177 CHVVTETTKRLALKGGLL 194 (194)
Q Consensus 177 ~~e~~~a~~~la~~eGi~ 194 (194)
+|+++++++|+++|||+
T Consensus 273 -~e~~~a~~~la~~~gi~ 289 (337)
T PRK12390 273 -EGTLEAIRLCARLEGML 289 (337)
T ss_pred -HHHHHHHHHHHHhcCcc
Confidence 99999999999999986
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.97 E-value=1.9e-31 Score=220.68 Aligned_cols=185 Identities=21% Similarity=0.218 Sum_probs=138.0
Q ss_pred CCCCC---CchhhHHHHHHHHHHHHcCCCCCCCccceEEEe--CCChHHHHHHHHHHHcCCcEEEEeCCCCC--------
Q 038938 2 GLLDH---PSTPSRIACSMIKDAEDKGSISPGKQYNVLVEI--TSANAGIGLASIASSRGYKIIVKMPNTYS-------- 68 (194)
Q Consensus 2 ~~~pt---gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~a--SsGN~g~a~A~~a~~~Gl~~~iv~p~~~~-------- 68 (194)
.+||+ ||+|||.+..++.+++++|. .+ |+++ |+||||+|+|++|+++|++|+||||+..+
T Consensus 39 ~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~~---vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~ 111 (337)
T TIGR01274 39 DCNSGLAFGGNKTRKLEYLIPDAQAQGC----TT---LVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDR 111 (337)
T ss_pred CCcCCcCccchHHHHHHHHHHHHHHcCC----CE---EEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhc
Confidence 36876 77799999999999999885 24 7876 77999999999999999999999998542
Q ss_pred HHHHh-------------------------------hhc-CCeEecCCC--CCCCch--------HHHHHc---CCCCCE
Q 038938 69 IQRRM-------------------------------SKI-PNAYLLQQH--ENPANP--------KIWKDS---GGKFDA 103 (194)
Q Consensus 69 ~~k~~-------------------------------~~~-~~~~~~~~~--~~~~~~--------~i~~q~---~~~~d~ 103 (194)
..+.. .+. +..|++..+ .++... +|++|+ +.+||+
T Consensus 112 ~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~~~~~~D~ 191 (337)
T TIGR01274 112 VGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLGGLGFVGFAFEVREQEGELGFKFDY 191 (337)
T ss_pred cchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccchhHHHHHHHHHHHHHHhcCCCCCE
Confidence 12222 122 122343333 234322 288995 447999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcccccCCC---CccccccccCCCC--Cc--cccccccCCcEEEeCC
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGK---PGLHLIQGIGIGI--IP--TVLDIKMLDEVKTVLL 176 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~~---~~~~~~~g~~~~~--~~--~~~~~~~vd~~~~V~d 176 (194)
||+|+|+|||++|++.++++.+|++|||+|||++++.+.... ...+.+++++... .+ ..+...++|+.|.|+|
T Consensus 192 vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 271 (337)
T TIGR01274 192 VVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPN 271 (337)
T ss_pred EEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCC
Confidence 999999999999999999999999999999999987553221 1123344544332 11 2456678899999999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 038938 177 CHVVTETTKRLALKGGLL 194 (194)
Q Consensus 177 ~~e~~~a~~~la~~eGi~ 194 (194)
+|+++++++|+++|||+
T Consensus 272 -~e~~~a~~~la~~eGi~ 288 (337)
T TIGR01274 272 -EGTLEAIRLCAKMEGVL 288 (337)
T ss_pred -HHHHHHHHHHHHhcCCc
Confidence 99999999999999986
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.97 E-value=1.3e-31 Score=220.97 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=136.2
Q ss_pred CCCCC--CchhhHHHHHHHHHHHHcCCCCCCCccceEE--EeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH-H--H-h
Q 038938 2 GLLDH--PSTPSRIACSMIKDAEDKGSISPGKQYNVLV--EITSANAGIGLASIASSRGYKIIVKMPNTYSIQ-R--R-M 73 (194)
Q Consensus 2 ~~~pt--gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv--~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~-k--~-~ 73 (194)
.+||+ ||||+|++.+++.+++++|. ++ |+ ++|+||||+|+|++|+++|+++++|||...+.. + . .
T Consensus 44 ~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~---vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~ 116 (329)
T PRK14045 44 DLTGLGIGGNKIRKLEYLLGDALSRGA----DV---VITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDK 116 (329)
T ss_pred cccCCCCCcchHHHHHhHHHHHHHcCC----CE---EEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHH
Confidence 46886 89999999999999998875 24 65 699999999999999999999999999865322 1 1 1
Q ss_pred ----------------------------h-hcCC-eEecCCCCCCCchH--------HHHHcC---CCCCEEEEecCCch
Q 038938 74 ----------------------------S-KIPN-AYLLQQHENPANPK--------IWKDSG---GKFDALVAGIRTGG 112 (194)
Q Consensus 74 ----------------------------~-~~~~-~~~~~~~~~~~~~~--------i~~q~~---~~~d~vv~~vG~GG 112 (194)
. +... +++++++.|+.++. |++|++ .++|+||+|+||||
T Consensus 117 ~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGG 196 (329)
T PRK14045 117 IMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGG 196 (329)
T ss_pred HCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHH
Confidence 1 1122 34577888888754 899986 37999999999999
Q ss_pred hHHHHHHHHHhhCCCceEEEEecCCccc-ccCC----CCccccccccCCCC-CccccccccCCcEEEeCCHHHHHHHHHH
Q 038938 113 TITGAEKFLKEKNLEMKVYGIESVESAV-LNGG----KPGLHLIQGIGIGI-IPTVLDIKMLDEVKTVLLCHVVTETTKR 186 (194)
Q Consensus 113 t~~Gi~~~l~~~~~~~~vigve~~~~~~-~~~~----~~~~~~~~g~~~~~-~~~~~~~~~vd~~~~V~d~~e~~~a~~~ 186 (194)
|++|++.++|..+|++|||+|+|.+... +.+. ....+.+.|++... .+.+.+.. +|+ |...+ +|+++++++
T Consensus 197 t~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~-~~~-y~~~~-~e~~~~~~~ 273 (329)
T PRK14045 197 TLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDYS-FGE-YGKIT-KEVAKLIRS 273 (329)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEecccc-cCC-CCCCC-HHHHHHHHH
Confidence 9999999999999999999999976321 2110 01122344554433 23333443 477 45556 799999999
Q ss_pred HHHhcCCC
Q 038938 187 LALKGGLL 194 (194)
Q Consensus 187 la~~eGi~ 194 (194)
|+++|||+
T Consensus 274 la~~eGi~ 281 (329)
T PRK14045 274 VGTMEGLI 281 (329)
T ss_pred HHHhhCCC
Confidence 99999996
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=2.5e-30 Score=227.47 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=130.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHh-----
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI---QRRM----- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~---~k~~----- 73 (194)
.+|||||||+|.+.+++..|++.|. +.. ++++|+||||+|+|++|+++|++|+||||+...+ .+..
T Consensus 294 ~lnptGS~K~r~al~~~~~a~~~g~---~~v---i~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~ 367 (610)
T PRK13803 294 DLNHTGSHKINNALGQALLAKRMGK---TRI---IAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLL 367 (610)
T ss_pred CCCCcccHHHHHHHHHHHHHHHcCC---CEE---EEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHC
Confidence 4799999999999999998888763 223 6689999999999999999999999999977421 1111
Q ss_pred --------------------------hhcCCeEecCCC-C--C--CCch---------HHHHHcC----CCCCEEEEecC
Q 038938 74 --------------------------SKIPNAYLLQQH-E--N--PANP---------KIWKDSG----GKFDALVAGIR 109 (194)
Q Consensus 74 --------------------------~~~~~~~~~~~~-~--~--~~~~---------~i~~q~~----~~~d~vv~~vG 109 (194)
++.++.+|+.++ . + |.+. +|++|+. ..||+||+|+|
T Consensus 368 GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vG 447 (610)
T PRK13803 368 GANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVG 447 (610)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 122334444322 1 2 2221 1888874 25999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCccc--------ccCCCCc--------------------cccccccCCCCC-c
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAV--------LNGGKPG--------------------LHLIQGIGIGII-P 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~--------~~~~~~~--------------------~~~~~g~~~~~~-~ 160 (194)
+||+++|++.+|++ +|+++||||||.++.. +..+.++ .+...|+..... +
T Consensus 448 gGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~ 526 (610)
T PRK13803 448 GGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGP 526 (610)
T ss_pred cCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCH
Confidence 99999999999964 7999999999998621 2222110 012223322211 1
Q ss_pred ccc--ccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 TVL--DIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 ~~~--~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
..+ .....++++.|+| +|+++++++|++.|||+
T Consensus 527 ~~~~~~~~~~~~~v~Vtd-~ea~~a~~~La~~eGi~ 561 (610)
T PRK13803 527 MHANLFETGRAIYTSVTD-EEALDAFKLLAKLEGII 561 (610)
T ss_pred HHHHHHhcCCeEEEEECH-HHHHHHHHHHHHHcCCc
Confidence 111 1233457999999 99999999999999985
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=3.6e-28 Score=203.01 Aligned_cols=184 Identities=21% Similarity=0.189 Sum_probs=140.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHh-------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT-YSIQRRM------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~-~~~~k~~------- 73 (194)
++|||||||||++..+++.+.+.|. .+ |+++||||+|.|+|+++++.|++|+|++|++ ++..|..
T Consensus 102 ~~nPT~SFKDrg~~~~~~~~~~~g~----~~---I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga 174 (411)
T COG0498 102 GHNPTGSFKDRGMTVLVSLAKELGA----KT---ILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGA 174 (411)
T ss_pred ccCCCcchhhhhHHHHHHHHHHhcC----CE---EEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999999873 35 9999999999999999999999999999998 8776655
Q ss_pred -------------------hhcCCeEecCCCCCCCchH--------HHHHcC-CCCCEEEEecCCchhHHHHHHHHHhhC
Q 038938 74 -------------------SKIPNAYLLQQHENPANPK--------IWKDSG-GKFDALVAGIRTGGTITGAEKFLKEKN 125 (194)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~-~~~d~vv~~vG~GGt~~Gi~~~l~~~~ 125 (194)
.++.++++....-||...+ +++|++ ..||+|++|+|+||.+.|++.++++..
T Consensus 175 ~~i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~ 254 (411)
T COG0498 175 HVIAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGL 254 (411)
T ss_pred EEEEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcc
Confidence 2334444443333443333 899998 479999999999999999999999865
Q ss_pred C------CceEEEEecCCcccccCC-C----CccccccccCCCCCcccccc------ccCCcEEEeCCHHHHHHHHHHHH
Q 038938 126 L------EMKVYGIESVESAVLNGG-K----PGLHLIQGIGIGIIPTVLDI------KMLDEVKTVLLCHVVTETTKRLA 188 (194)
Q Consensus 126 ~------~~~vigve~~~~~~~~~~-~----~~~~~~~g~~~~~~~~~~~~------~~vd~~~~V~d~~e~~~a~~~la 188 (194)
| -+++.+|+++++..+... + ...+..+++-.+. |.++.+ +.-+.++.|+| +|+++++++|+
T Consensus 255 ~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~-p~n~~r~l~a~~es~g~~~~vsd-eEi~~a~~~l~ 332 (411)
T COG0498 255 PIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN-PSNWERALFALRESGGLAVAVSD-EEILEAIKLLA 332 (411)
T ss_pred cccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-CCCHHHHHHHHHhcCCceEEeCH-HHHHHHHHHHH
Confidence 5 368889999886544322 2 1223344444332 333321 12356899999 99999999999
Q ss_pred HhcCCC
Q 038938 189 LKGGLL 194 (194)
Q Consensus 189 ~~eGi~ 194 (194)
++||+|
T Consensus 333 ~~eG~~ 338 (411)
T COG0498 333 EREGIL 338 (411)
T ss_pred HhCCcc
Confidence 999986
No 80
>PRK09225 threonine synthase; Validated
Probab=99.87 E-value=2.1e-21 Score=165.49 Aligned_cols=182 Identities=12% Similarity=0.023 Sum_probs=123.8
Q ss_pred CCCCCCchhhHHHHH---HHHHHHHcCCCCCCCccceEEEeCCChHHHHH-HHHHHHcCCcEEEEeCCC-CCHHHHh---
Q 038938 2 GLLDHPSTPSRIACS---MIKDAEDKGSISPGKQYNVLVEITSANAGIGL-ASIASSRGYKIIVKMPNT-YSIQRRM--- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~---~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~-A~~a~~~Gl~~~iv~p~~-~~~~k~~--- 73 (194)
.++||||||||++.. ++..+++ +. -.+ |+++||||+|.|+ |+++.+.|++|+|+.|++ ++..++.
T Consensus 104 fhGPT~sFKD~a~~~l~~~l~~a~~-~~---~~~---Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~ 176 (462)
T PRK09225 104 FHGPTLAFKDFALQFLAQLLEYVLK-GE---KIT---ILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMT 176 (462)
T ss_pred ccCCccchhhhHHHHHHHHHHHHHh-CC---CcE---EEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHH
Confidence 479999999999977 7888877 32 124 9999999999998 799999999999999986 7765544
Q ss_pred --------------------------------hhcCCeEecCCCCCCCchH--------HHHHcCC---CCCEEEEecCC
Q 038938 74 --------------------------------SKIPNAYLLQQHENPANPK--------IWKDSGG---KFDALVAGIRT 110 (194)
Q Consensus 74 --------------------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~---~~d~vv~~vG~ 110 (194)
.+..+++..+.. |+...+ +++|+.+ .||.|++|+|.
T Consensus 177 t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGn 255 (462)
T PRK09225 177 TLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGN 255 (462)
T ss_pred hhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHHHHHHHHHHHHHHHHhccccCCCCEEEEECCc
Confidence 011233333332 332222 7889864 39999999999
Q ss_pred chhHHHHHHHHHhhCCCceEEEEecCCccccc----CCC-----CccccccccCCCCCcccccc------------c--c
Q 038938 111 GGTITGAEKFLKEKNLEMKVYGIESVESAVLN----GGK-----PGLHLIQGIGIGIIPTVLDI------------K--M 167 (194)
Q Consensus 111 GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~----~~~-----~~~~~~~g~~~~~~~~~~~~------------~--~ 167 (194)
||.+.|.+.+.+--.|-.|+|+++ ..++.+. .+. ...+..+++.... |.++.+ - +
T Consensus 256 fgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~-psn~eR~l~~~~~~~~~~v~~~ 333 (462)
T PRK09225 256 FGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDISV-SSNFERLLFDLLGRDAAAVEEL 333 (462)
T ss_pred HHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcCC-CCcHHHHHHHhcCCcHHHHHHH
Confidence 999999998844333656899987 3343332 121 1122333333222 222222 0 0
Q ss_pred -----------CC-----------cEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 168 -----------LD-----------EVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 168 -----------vd-----------~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
++ ..+.|+| +|+.++++++++++|++
T Consensus 334 m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD-~ei~~ai~~~~~~~G~~ 381 (462)
T PRK09225 334 MEDLEEKGEYDLSDEELAALREDFSAGSVSD-EETLATIREVYEEYGYL 381 (462)
T ss_pred HHHHHHcCCcccCHHHHHHhhhcceEEEECH-HHHHHHHHHHHHhCCEE
Confidence 01 4688999 99999999999999974
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.87 E-value=2.8e-21 Score=153.77 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=123.0
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---------
Q 038938 3 LLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--------- 73 (194)
Q Consensus 3 ~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--------- 73 (194)
||.||+||...+...+..|++.|+. |.+.|...|.||.|.|.+|+++||+|+|||.... .+|+.
T Consensus 80 L~HtGAHKiNN~lGQ~LLAkrMGK~------riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~D-v~RQ~~NVfRM~Ll 152 (396)
T COG0133 80 LNHTGAHKINNALGQALLAKRMGKT------RIIAETGAGQHGVATATAAALFGLECVIYMGAED-VERQALNVFRMRLL 152 (396)
T ss_pred hcccchhhHHHHHHHHHHHHHhCCc------eEEeecCCCcccHHHHHHHHHhCCceEEEecchh-hhhcccchhhhhhc
Confidence 7899999999999999999999852 3488999999999999999999999999998642 12221
Q ss_pred --------------------------hhcCC-eEe------cCCCCCCCchH-----------HHHHcCCCCCEEEEecC
Q 038938 74 --------------------------SKIPN-AYL------LQQHENPANPK-----------IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 74 --------------------------~~~~~-~~~------~~~~~~~~~~~-----------i~~q~~~~~d~vv~~vG 109 (194)
.+-.. +|+ +++|....... |+++.+.-||+||.|+|
T Consensus 153 GA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVG 232 (396)
T COG0133 153 GAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVG 232 (396)
T ss_pred CceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEecc
Confidence 11111 222 22221111000 55666656999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCccc--------ccCCCCc--------------cccc-----------cccCC
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAV--------LNGGKPG--------------LHLI-----------QGIGI 156 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~--------~~~~~~~--------------~~~~-----------~g~~~ 156 (194)
+|+...|+...|-+ ++++++||||+.+.-. +..++++ ..+. +|+|+
T Consensus 233 GGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGP 311 (396)
T COG0133 233 GGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGP 311 (396)
T ss_pred CCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCCh
Confidence 99999999888853 4789999999987532 2211111 0111 11221
Q ss_pred CCCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 157 GIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 157 ~~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.. ..+...---+++.|+| +|++++.++|++.|||+
T Consensus 312 eh--a~l~~~gRa~y~~itD-~EAl~af~~L~r~EGII 346 (396)
T COG0133 312 EH--AYLKDIGRAEYVSITD-EEALEAFQLLSRLEGII 346 (396)
T ss_pred hH--HHHHhcCceeEEecCh-HHHHHHHHHHHHhcCcc
Confidence 11 0111112236789999 99999999999999995
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.85 E-value=3.1e-20 Score=158.47 Aligned_cols=185 Identities=12% Similarity=0.002 Sum_probs=121.7
Q ss_pred CCCCCCchhhHHHHHH---HHHHHHcCCCCCCCccceEEEeCCChHHHH-HHHHHHHcCCcEEEEeCCC-CCHHHHh---
Q 038938 2 GLLDHPSTPSRIACSM---IKDAEDKGSISPGKQYNVLVEITSANAGIG-LASIASSRGYKIIVKMPNT-YSIQRRM--- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~---~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a-~A~~a~~~Gl~~~iv~p~~-~~~~k~~--- 73 (194)
.++||||||||++..+ +..++++.. .-.+ |+++||||+|.| +++++.+.|++|+|+.|++ +++.++.
T Consensus 103 fhGPT~sFKD~a~~~l~~l~~~~~~~~~--~~~~---Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~ 177 (460)
T cd01560 103 FHGPTLAFKDMALQFLGRLLEYFLKRRN--ERIT---ILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMT 177 (460)
T ss_pred eeCCCcchHHhHHHHHHHHHHHHHHhcC--CCeE---EEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHH
Confidence 4789999999998765 666665411 1124 999999999999 5899999999999999986 7766554
Q ss_pred --------------------------------hhcCCeEecCCCCCCCchH--------HHHHcCC----CCCEEEEecC
Q 038938 74 --------------------------------SKIPNAYLLQQHENPANPK--------IWKDSGG----KFDALVAGIR 109 (194)
Q Consensus 74 --------------------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~~----~~d~vv~~vG 109 (194)
.+..+++..+.. |+...+ +++|+.+ .|+.|++|+|
T Consensus 178 t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtG 256 (460)
T cd01560 178 TLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANSI-NWARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTG 256 (460)
T ss_pred hhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHHHHHHHHHHHHHHHHhccccCCCCCEEEEECC
Confidence 011123333321 232222 7888863 5899999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCccc--c-cCCC--C----ccccccccCCCCCcccccccc-----CC------
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAV--L-NGGK--P----GLHLIQGIGIGIIPTVLDIKM-----LD------ 169 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~--~-~~~~--~----~~~~~~g~~~~~~~~~~~~~~-----vd------ 169 (194)
.||.+.|.+.+.+--.|-.|+|+++-+.... . ..+. . ..+..+++.... |.++.+-+ -|
T Consensus 257 nfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~~-psn~eR~L~~l~~~~g~~~~~ 335 (460)
T cd01560 257 NFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDILK-SSNFERLLFLLAGRDRTKVKM 335 (460)
T ss_pred cHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcCC-CCCHHHHHHHHhCCCHHHHHH
Confidence 9999999999865434667898876544311 1 1121 1 122333333221 22222100 01
Q ss_pred -------------------------cEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 170 -------------------------EVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 170 -------------------------~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
..+.|+| +|+.++++++++++|++
T Consensus 336 ~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD-~ei~~~i~~~~~~~G~~ 384 (460)
T cd01560 336 LMEEFEATGFLSLPKEELKKLREDFSSGSVSD-EETLETIREVYEETGYL 384 (460)
T ss_pred HHHHHHhcCCEecCHHHHHhhhccceEEEECH-HHHHHHHHHHHHhcCEE
Confidence 4588999 99999999999999874
No 83
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.80 E-value=3.5e-19 Score=143.41 Aligned_cols=185 Identities=20% Similarity=0.196 Sum_probs=118.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
.+|||||||...|...+..+++.|+. |++.|...|.||.|+|.+|+++||+|+|+|-...-..+..
T Consensus 147 dlnh~GsHKiNnav~QallakrlGkk------nviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrll 220 (477)
T KOG1395|consen 147 DLNHTGSHKINNAVAQALLAKRLGKK------NVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLL 220 (477)
T ss_pred CCCccccCCcccHHHHHHHHHHhccc------ceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHh
Confidence 58999999999988888888888742 3588999999999999999999999999997642111110
Q ss_pred -----------------hhcCCeEecCCC----------CCCC------chH---H--------HHHcCCCCCEEEEecC
Q 038938 74 -----------------SKIPNAYLLQQH----------ENPA------NPK---I--------WKDSGGKFDALVAGIR 109 (194)
Q Consensus 74 -----------------~~~~~~~~~~~~----------~~~~------~~~---i--------~~q~~~~~d~vv~~vG 109 (194)
..+.+..|+.+. ..|+ +.. | .+-.++.||+||.|+|
T Consensus 221 GAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvG 300 (477)
T KOG1395|consen 221 GAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVG 300 (477)
T ss_pred CceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEecc
Confidence 011111121111 1111 100 1 1223446999999999
Q ss_pred CchhHHHHHHHHHhhCCCceEEEEecCCcccccC--------CCCc-------------------cccc-cccCCC-CCc
Q 038938 110 TGGTITGAEKFLKEKNLEMKVYGIESVESAVLNG--------GKPG-------------------LHLI-QGIGIG-IIP 160 (194)
Q Consensus 110 ~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~--------~~~~-------------------~~~~-~g~~~~-~~~ 160 (194)
+|+..+|+..-|.. +..++.|+||..+...-.. +..+ ++.+ .|+-.. .-|
T Consensus 301 GGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgP 379 (477)
T KOG1395|consen 301 GGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGP 379 (477)
T ss_pred CCCccccccchhhc-cchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCCh
Confidence 99999999988863 4568899998876542221 1110 0100 111100 001
Q ss_pred cc--cccccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 161 TV--LDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 161 ~~--~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
.. +...-.-+++.|+| .|++++.+.|++.|||+
T Consensus 380 els~~k~~grae~isitd-~eclegfk~~srlEGII 414 (477)
T KOG1395|consen 380 ELSHLKETGRAEFISITD-AECLEGFKQLSRLEGII 414 (477)
T ss_pred hHHHHHhcCceeEEecCh-HHHHHHHHHHHHhcccc
Confidence 10 11112357899999 99999999999999995
No 84
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.75 E-value=1.9e-17 Score=131.47 Aligned_cols=180 Identities=19% Similarity=0.147 Sum_probs=133.5
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCccceEEEe--CCChHHHHHHHHHHHcCCcEEEEeCCCC-------CHHHHh----
Q 038938 7 PSTPSRIACSMIKDAEDKGSISPGKQYNVLVEI--TSANAGIGLASIASSRGYKIIVKMPNTY-------SIQRRM---- 73 (194)
Q Consensus 7 gS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~a--SsGN~g~a~A~~a~~~Gl~~~iv~p~~~-------~~~k~~---- 73 (194)
|--|.|--.+.+.+|+++|. ++ +|++ .-.||-+++|++|+++|++|+.++.... +..+..
T Consensus 45 gGNK~RKLefll~eal~~g~----dT---lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~ 117 (323)
T COG2515 45 GGNKIRKLEFLLGEALRKGA----DT---LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGA 117 (323)
T ss_pred CccHHHHHHHHHhhhhhcCC----cE---EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCc
Confidence 56799999999999998875 35 7776 4479999999999999999999998765 111111
Q ss_pred --------------------------hhcCCeEecCCCCCCCchH--------HHHHcC--CCCCEEEEecCCchhHHHH
Q 038938 74 --------------------------SKIPNAYLLQQHENPANPK--------IWKDSG--GKFDALVAGIRTGGTITGA 117 (194)
Q Consensus 74 --------------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~--~~~d~vv~~vG~GGt~~Gi 117 (194)
...+.+.++.+-.||.... |.+|.. -++|.||+++|||||++|+
T Consensus 118 ~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl 197 (323)
T COG2515 118 EVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGL 197 (323)
T ss_pred eEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHH
Confidence 1123466777766774322 777766 5899999999999999999
Q ss_pred HHHHHhhCCCceEEEEecCCcccccCCC---CccccccccCCC-CCccccccccCCcEEEeCCHHHHHHHHHHHHHhcCC
Q 038938 118 EKFLKEKNLEMKVYGIESVESAVLNGGK---PGLHLIQGIGIG-IIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGL 193 (194)
Q Consensus 118 ~~~l~~~~~~~~vigve~~~~~~~~~~~---~~~~~~~g~~~~-~~~~~~~~~~vd~~~~V~d~~e~~~a~~~la~~eGi 193 (194)
+.++...+|+.+|||+.+.+.......+ .....++-++.. ......+.++.-+.|.+++ +|.+++++++++.|||
T Consensus 198 ~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~-~e~~e~i~~~~~~eGi 276 (323)
T COG2515 198 LVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPN-EEDIEAIKLLARLEGI 276 (323)
T ss_pred HHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcC-HHHHHHHHHHHHhhCc
Confidence 9999989999999999998876443221 011112222222 2233456778888899999 9999999999999998
Q ss_pred C
Q 038938 194 L 194 (194)
Q Consensus 194 ~ 194 (194)
+
T Consensus 277 l 277 (323)
T COG2515 277 L 277 (323)
T ss_pred c
Confidence 5
No 85
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=132.67 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=126.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--------
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------- 73 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------- 73 (194)
+..||||||...|......++.+|.. |.+.+...|.+|.|++.+|+.+|++|+|||-...-..|..
T Consensus 103 g~tptGSHKiNTAlAqaYyak~eg~~------rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~y 176 (432)
T COG1350 103 GVTPTGSHKINTALAQAYYAKKEGAK------RLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELY 176 (432)
T ss_pred ccCCCCCCCcchHHHHHHHHHhcCce------eeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHh
Confidence 56799999999999999999988752 2377888999999999999999999999997643222211
Q ss_pred -------------------hh---cC-------------------CeEecCCCCCCCch-------H---HHHHcCCCCC
Q 038938 74 -------------------SK---IP-------------------NAYLLQQHENPANP-------K---IWKDSGGKFD 102 (194)
Q Consensus 74 -------------------~~---~~-------------------~~~~~~~~~~~~~~-------~---i~~q~~~~~d 102 (194)
++ .| ..|.+-.--|-... + -++|+++.||
T Consensus 177 Ga~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvllhQTViGlEakkQle~~~e~PD 256 (432)
T COG1350 177 GAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVLLHQTVIGLEAKKQLEQAGEDPD 256 (432)
T ss_pred CCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 00 01 11111000000000 0 3556677899
Q ss_pred EEEEecCCchhHHHHHHHHHh--hC--CCceEEEEecCCcccccCCCC----cc-------ccccccCCCCCccccc---
Q 038938 103 ALVAGIRTGGTITGAEKFLKE--KN--LEMKVYGIESVESAVLNGGKP----GL-------HLIQGIGIGIIPTVLD--- 164 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~--~~--~~~~vigve~~~~~~~~~~~~----~~-------~~~~g~~~~~~~~~~~--- 164 (194)
.+|.|||+|+.++|+.--|-. +. ..+++|+|||..+|.+..+.- ++ .++..+|..+.|+.+.
T Consensus 257 v~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgG 336 (432)
T COG1350 257 VIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGG 336 (432)
T ss_pred EEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCccccc
Confidence 999999999999999776642 22 238999999999999886521 11 1233445444433221
Q ss_pred --------------cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 165 --------------IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 165 --------------~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
..-+-+.+..+. +|++++.+.+++.|||+
T Consensus 337 LRYHG~aPtls~L~~~Giv~a~ay~Q-~Evfeaa~lFa~~EGiV 379 (432)
T COG1350 337 LRYHGVAPTLSLLVKEGIVEARAYDQ-EEVFEAAVLFARTEGIV 379 (432)
T ss_pred ccccCcChHHHHHHHcCcccceecCh-HHHHHHHHHHHHhcCCc
Confidence 112346778999 99999999999999985
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.60 E-value=7.1e-15 Score=116.90 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=139.8
Q ss_pred CCCchhhHHHHHHHH-H----HHHcCCCCCCCc--------------cceEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 5 DHPSTPSRIACSMIK-D----AEDKGSISPGKQ--------------YNVLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 5 ptgS~K~R~a~~~~~-~----a~~~g~~~~g~~--------------~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
-+||+|.|+..+-+. . |++.|.++-.+. +-++...|+||.|+++-...+++|++++|-|+.
T Consensus 113 IsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSA 192 (443)
T COG3048 113 ISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSA 192 (443)
T ss_pred cccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecc
Confidence 469999998766554 3 445554421110 013888999999999999999999999999999
Q ss_pred CCCHHHHh---------------------------hhcCCeEecCCCCCCCchH--------HHHHcC--------CCCC
Q 038938 66 TYSIQRRM---------------------------SKIPNAYLLQQHENPANPK--------IWKDSG--------GKFD 102 (194)
Q Consensus 66 ~~~~~k~~---------------------------~~~~~~~~~~~~~~~~~~~--------i~~q~~--------~~~d 102 (194)
+..+.|++ .+.|..||++.-++..... +-.|++ +.|-
T Consensus 193 DAr~WKKd~LRs~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPL 272 (443)
T COG3048 193 DARAWKKDKLRSHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFIDDENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPL 272 (443)
T ss_pred hHHHHHHHHHHhcCceEEEecchhhHHHHHhhhhhccCCceEEecccchhhhhhhHHHHHHHHHHHHHhcCceecCCCce
Confidence 87766665 2346677776543332222 555553 2466
Q ss_pred EEEEecCCchhHHHHHHHHHhh-CCCceEEEEecCCcccccCC---------------CCccccccccCCCCCccccc--
Q 038938 103 ALVAGIRTGGTITGAEKFLKEK-NLEMKVYGIESVESAVLNGG---------------KPGLHLIQGIGIGIIPTVLD-- 164 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~~-~~~~~vigve~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~-- 164 (194)
.|..|+|.||--.|++.+||.. ..++-++-+||..+|++.-+ -...+.++|++.++.+....
T Consensus 273 fVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~ 352 (443)
T COG3048 273 FVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRA 352 (443)
T ss_pred EEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHH
Confidence 8999999999999999999975 46799999999999987532 12345567888877655543
Q ss_pred -cccCCcEEEeCCHHHHHHHHHHHHHhcCCC
Q 038938 165 -IKMLDEVKTVLLCHVVTETTKRLALKGGLL 194 (194)
Q Consensus 165 -~~~vd~~~~V~d~~e~~~a~~~la~~eGi~ 194 (194)
..++|.+++|+| +..++...+|++.|||.
T Consensus 353 me~lL~G~~TvdD-~~ly~lL~~L~~~e~~r 382 (443)
T COG3048 353 MERLLDGYYTVDD-QTLYDLLGWLAQEEGIR 382 (443)
T ss_pred HHHHhCCcEEech-HHHHHHHHHHHHhcCcc
Confidence 457899999999 99999999999999973
No 87
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.02 E-value=3.6 Score=34.06 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=61.7
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcCC-C
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSGG-K 100 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~~-~ 100 (194)
...+++|++ .+|.+.+|.-|...-..|+.+|...+++.... ++.+ ..+.|.-....|.+....+ +.+-+++ .
T Consensus 137 ~~~l~~g~~--VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~---~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGET--VLVHGAAGGVGSAAIQLAKALGATVVAVVSSS---EKLELLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCE--EEEecCCchHHHHHHHHHHHcCCcEEEEecCH---HHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 345667766 67888899999999999999999444444322 2222 4444544444466554333 4444554 4
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
+|.|+-++|+-... -. ++.+.++-+++-+-
T Consensus 212 vDvv~D~vG~~~~~-~~---l~~l~~~G~lv~ig 241 (326)
T COG0604 212 VDVVLDTVGGDTFA-AS---LAALAPGGRLVSIG 241 (326)
T ss_pred ceEEEECCCHHHHH-HH---HHHhccCCEEEEEe
Confidence 99999999754443 23 33344555555443
No 88
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.95 E-value=6.5 Score=32.80 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=56.3
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~ 99 (194)
+...+.+|++ |+...+|..|..++..|+.+|.+-++++.. +++|.+ ++.-|. ..++ +.++.... +.+..++
T Consensus 185 ~~~~i~~g~~---VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~--~~~r~~~a~~~Ga~~~i~-~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 185 NTAGVRPGQS---VAVVGLGGVGLSALLGAVAAGASQVVAVDL--NEDKLALARELGATATVN-AGDPNAVEQVRELTGG 258 (371)
T ss_pred hccCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHcCCceEeC-CCchhHHHHHHHHhCC
Confidence 3445667766 444557999999999999999954444432 233433 333332 1222 22222122 4443444
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.||-++|+..++.-. ++...+.-+++.+
T Consensus 259 g~d~vid~~G~~~~~~~~---~~~l~~~G~iv~~ 289 (371)
T cd08281 259 GVDYAFEMAGSVPALETA---YEITRRGGTTVTA 289 (371)
T ss_pred CCCEEEECCCChHHHHHH---HHHHhcCCEEEEE
Confidence 689999999876554433 3333454455443
No 89
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.75 E-value=3 Score=28.46 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=64.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCchhH
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGGTI 114 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GGt~ 114 (194)
++....|+.|..++-.-...+.+++++-.+....++ ....+..++. .++.+...+++.+ .+.+.||+.++.=..-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~--~~~~~~~~i~--gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEE--LREEGVEVIY--GDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHH--HHHTTSEEEE--S-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHH--HHhccccccc--ccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 455677899999999999977677777654322222 2333333332 3444555677765 3689999999887777
Q ss_pred HHHHHHHHhhCCCceEEEEec
Q 038938 115 TGAEKFLKEKNLEMKVYGIES 135 (194)
Q Consensus 115 ~Gi~~~l~~~~~~~~vigve~ 135 (194)
.=++..+|+.+|+.+++..-.
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHCCCCeEEEEEC
Confidence 677788899999999886543
No 90
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.69 E-value=6.8 Score=32.43 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=55.2
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcCCCCCEEEE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSGGKFDALVA 106 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~~~~d~vv~ 106 (194)
.+|.+ |+....|..|...+..|+.+|.+++++.+...++.|.+ +++-|..+++. .+....+ .+....+|.||-
T Consensus 171 ~~g~~---vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~-~~~~~~~--~~~~~~~d~vid 244 (355)
T cd08230 171 WNPRR---ALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNS-SKTPVAE--VKLVGEFDLIIE 244 (355)
T ss_pred CCCCE---EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecC-Cccchhh--hhhcCCCCEEEE
Confidence 45655 55556799999999999999998666655333444443 33444333332 2111111 112235899999
Q ss_pred ecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 107 GIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 107 ~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
++|+..++.- +++...+.-+++-+
T Consensus 245 ~~g~~~~~~~---~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPPLAFE---ALPALAPNGVVILF 268 (355)
T ss_pred CcCCHHHHHH---HHHHccCCcEEEEE
Confidence 9987654433 33334454455433
No 91
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.39 E-value=4.7 Score=33.47 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=102.8
Q ss_pred HHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeE-ecCCCC--CCCchHHHHH
Q 038938 21 AEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAY-LLQQHE--NPANPKIWKD 96 (194)
Q Consensus 21 a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~-~~~~~~--~~~~~~i~~q 96 (194)
|....+++||.+ ++...=|.-|+|++.-|+..|-.=+|=+. .+++|.+ ++.-|.. ++++-+ .|....|.|.
T Consensus 184 a~~~Akv~~Gst---vAVfGLG~VGLav~~Gaka~GAsrIIgvD--iN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~Em 258 (375)
T KOG0022|consen 184 AWNTAKVEPGST---VAVFGLGGVGLAVAMGAKAAGASRIIGVD--INPDKFEKAKEFGATEFINPKDLKKPIQEVIIEM 258 (375)
T ss_pred hhhhcccCCCCE---EEEEecchHHHHHHHhHHhcCcccEEEEe--cCHHHHHHHHhcCcceecChhhccccHHHHHHHH
Confidence 344446778988 99999999999999999999997766554 3445544 3333322 344331 1111117788
Q ss_pred cCCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcccccCCC---Cc----cccccccCCC-CCcccccc---
Q 038938 97 SGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGK---PG----LHLIQGIGIG-IIPTVLDI--- 165 (194)
Q Consensus 97 ~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~~---~~----~~~~~g~~~~-~~~~~~~~--- 165 (194)
.++.+|+-|=++|.=.++.-.....+.-+-..-+|||.+.+...-.+.. .+ .....|+-+. .+|.++++
T Consensus 259 TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~ 338 (375)
T KOG0022|consen 259 TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMK 338 (375)
T ss_pred hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHHh
Confidence 8888999999999988887666666655667889999998764322210 11 1122332221 13333321
Q ss_pred -c-cCCcEE--EeCCHHHHHHHHHHHHH
Q 038938 166 -K-MLDEVK--TVLLCHVVTETTKRLAL 189 (194)
Q Consensus 166 -~-~vd~~~--~V~d~~e~~~a~~~la~ 189 (194)
. .+|+.+ ..+- +|+-+|..+|.+
T Consensus 339 ~~l~ld~~ITh~l~f-~~In~AF~ll~~ 365 (375)
T KOG0022|consen 339 KKLNLDEFITHELPF-EEINKAFDLLHE 365 (375)
T ss_pred CccchhhhhhcccCH-HHHHHHHHHHhC
Confidence 1 256655 3677 889899888853
No 92
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.07 E-value=0.75 Score=33.78 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=52.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eEecCCCCCCCchH----HHHHcCCCCCEEEEecCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AYLLQQHENPANPK----IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~~~~~~~~~~~~~----i~~q~~~~~d~vv~~vG~ 110 (194)
|..-.+||+|.|+|...+..|.+++++.++....+.++..+.+ .|+.+ +.-+.+.. +.+.+. .-|.|++++=+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~-~~l~~~i~~t~dl~~a~~-~ad~IiiavPs 79 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPG-IKLPENIKATTDLEEALE-DADIIIIAVPS 79 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTT-SBEETTEEEESSHHHHHT-T-SEEEE-S-G
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCC-cccCcccccccCHHHHhC-cccEEEecccH
Confidence 7778899999999999999999999998865222222222211 11111 11111111 333333 56888888755
Q ss_pred chhHHHHHHHHHhhCCCceEEEEecCC
Q 038938 111 GGTITGAEKFLKEKNLEMKVYGIESVE 137 (194)
Q Consensus 111 GGt~~Gi~~~l~~~~~~~~vigve~~~ 137 (194)
=+. -.+...++.+.++-.++..-+.|
T Consensus 80 ~~~-~~~~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 80 QAH-REVLEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp GGH-HHHHHHHTTTSHTT-EEEETS-S
T ss_pred HHH-HHHHHHHhhccCCCCEEEEecCC
Confidence 553 35555555443333444444444
No 93
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.96 E-value=5.2 Score=32.95 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG 98 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~ 98 (194)
++...+.+|.+ |+...+|..|.+++..|+.+|.+.++++.. +.++.. ..+.+. .+++ +.++.... +.+..+
T Consensus 165 l~~~~~~~g~~---vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~--~~~~~~~~~~~ga~~~i~-~~~~~~~~~l~~~~~ 238 (351)
T cd08233 165 VRRSGFKPGDT---ALVLGAGPIGLLTILALKAAGASKIIVSEP--SEARRELAEELGATIVLD-PTEVDVVAEVRKLTG 238 (351)
T ss_pred HHhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEC-CCccCHHHHHHHHhC
Confidence 34445667766 544457999999999999999954444432 233332 222222 2222 22222222 445555
Q ss_pred C-CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 G-KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~-~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+ .+|.|+-++|++.++.-....+ .+.-+++.+
T Consensus 239 ~~~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~~ 271 (351)
T cd08233 239 GGGVDVSFDCAGVQATLDTAIDAL---RPRGTAVNV 271 (351)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhc---cCCCEEEEE
Confidence 4 3999999998766554444443 344455544
No 94
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=90.94 E-value=7.9 Score=31.84 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCch-HHHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANP-KIWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~-~i~~q~~~ 99 (194)
+...+.+|.+ |+...+|..|.+++..|+.+|.+.++++... +.+.. .++.+. .+++ +.+.... ++.+..++
T Consensus 168 ~~~~~~~g~~---vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~--~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~ 241 (350)
T cd08256 168 DRANIKFDDV---VVLAGAGPLGLGMIGAARLKNPKKLIVLDLK--DERLALARKFGADVVLN-PPEVDVVEKIKELTGG 241 (350)
T ss_pred HhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCcEEEEEcCC--HHHHHHHHHcCCcEEec-CCCcCHHHHHHHHhCC
Confidence 4455667766 5557779999999999999999876665543 23332 222232 2222 2222222 25555543
Q ss_pred -CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 -KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.++-++|+..++......+ .+.-+++-+
T Consensus 242 ~~vdvvld~~g~~~~~~~~~~~l---~~~G~~v~~ 273 (350)
T cd08256 242 YGCDIYIEATGHPSAVEQGLNMI---RKLGRFVEF 273 (350)
T ss_pred CCCCEEEECCCChHHHHHHHHHh---hcCCEEEEE
Confidence 4899999988654444444444 344455544
No 95
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.64 E-value=3.4 Score=36.78 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=66.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCch
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGG 112 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GG 112 (194)
.++.+..|+.|+.+|-.-+..|.+++++-++. ++.+ .++.+.... +.|..+++.+++.+ ++.|.+++.++.--
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~---~~~~~~~~~g~~~i--~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSR---TRVDELRERGIRAV--LGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCH---HHHHHHHHCCCeEE--EcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 49999999999999999999999987776543 2222 233343222 23444555667665 46899999988866
Q ss_pred hHHHHHHHHHhhCCCceEEEEe
Q 038938 113 TITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 113 t~~Gi~~~l~~~~~~~~vigve 134 (194)
.-.-+....++.+|+.+++.-.
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEE
Confidence 5555666677888999988754
No 96
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.55 E-value=6.3 Score=32.25 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=57.3
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC-
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG- 99 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~- 99 (194)
...+.+|.+ .+| ..+|..|.+++..|+.+|.+.++.+... ..+.. .+.-+. +.++ +.++.... |.+..++
T Consensus 163 ~~~~~~g~~--vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~~-~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 163 SAGVRPGST--VVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIVA-ERGEEAVARVRELTGGV 236 (345)
T ss_pred hcCCCCCCE--EEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEec-CCcccHHHHHHHhcCCC
Confidence 334556655 345 5689999999999999999866665543 22222 222232 2222 22222222 4433432
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.+|.++.++|++.++......+ .+.-+++-+.
T Consensus 237 ~~d~il~~~g~~~~~~~~~~~l---~~~g~~v~~g 268 (345)
T cd08287 237 GADAVLECVGTQESMEQAIAIA---RPGGRVGYVG 268 (345)
T ss_pred CCCEEEECCCCHHHHHHHHHhh---ccCCEEEEec
Confidence 5899999988766554444444 3444555443
No 97
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.44 E-value=5.8 Score=32.93 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=53.1
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~ 99 (194)
+.+.+.+|++ |+...+|--|.+++..|+.+|.+.++++.. +.++.+ +++-|. ..++ +.++.... +.+..++
T Consensus 170 ~~~~~~~g~~---VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 170 NTGGVKRGDS---VAVIGCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGG 243 (358)
T ss_pred hccCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCC
Confidence 3445667766 544467999999999999999974444432 233332 333332 2222 22222222 4444443
Q ss_pred -CCCEEEEecCCchhHHHHHHHH
Q 038938 100 -KFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
.+|.|+-++|+..++.-....+
T Consensus 244 ~g~d~vid~~g~~~~~~~~~~~~ 266 (358)
T TIGR03451 244 FGADVVIDAVGRPETYKQAFYAR 266 (358)
T ss_pred CCCCEEEECCCCHHHHHHHHHHh
Confidence 5899999998765544433333
No 98
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.04 E-value=8 Score=31.81 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGG 99 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~ 99 (194)
.+...+.+|++ |+....|..|.+++..|+.+|.+.++++.. +.++.. .++-|. ..++ +++.....+.+.+.+
T Consensus 153 ~~~~~~~~g~~---vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 153 FHLAQGCEGKN---VIIIGAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTFN-SREMSAPQIQSVLRE 226 (347)
T ss_pred HHhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEec-CcccCHHHHHHHhcC
Confidence 34445566766 544467999999999999999986555432 233332 232332 2222 222221224444443
Q ss_pred -CCC-EEEEecCCchhHHHHHHHH
Q 038938 100 -KFD-ALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 100 -~~d-~vv~~vG~GGt~~Gi~~~l 121 (194)
.+| .||-++|+..++.-....+
T Consensus 227 ~~~d~~v~d~~G~~~~~~~~~~~l 250 (347)
T PRK10309 227 LRFDQLILETAGVPQTVELAIEIA 250 (347)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHh
Confidence 477 7788988766654443444
No 99
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.02 E-value=6.9 Score=32.23 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=56.7
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC-
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG- 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~- 98 (194)
+...+.+|.+ |+...+|..|.+++..|+.+|...++.+... .++.. ++.-|. ..++ +.+..... +.....
T Consensus 160 ~~~~~~~g~~---vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~~v~-~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 160 ELANIKLGDT---VAVFGIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATDIVD-YKNGDVVEQILKLTGG 233 (351)
T ss_pred HccCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCceEec-CCCCCHHHHHHHHhCC
Confidence 4445667766 5444679999999999999999755555433 22222 222332 1222 22222222 333333
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
..+|.++-++|+..++.-.... ..+.-+++-+
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~---l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKV---LKPGGTISNV 265 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHH---hhcCCEEEEe
Confidence 3589999998876554444444 3455555543
No 100
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.87 E-value=7.2 Score=33.31 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=65.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCchh
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGGT 113 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GGt 113 (194)
.++.+..|+.|..++-.-+..|.+++++.++.. ++ ....+..++. .|+...+.+++.+ ++-+.|++.+..=..
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~--~~~~g~~vI~--GD~td~e~L~~AgI~~A~aVI~~t~dD~~ 315 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EH--RLPDDADLIP--GDSSDSAVLKKAGAARARAILALRDNDAD 315 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hh--hccCCCcEEE--eCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence 499999999999998887788999999887632 11 1122333332 2444455666665 367899988877555
Q ss_pred HHHHHHHHHhhCCCceEEEEec
Q 038938 114 ITGAEKFLKEKNLEMKVYGIES 135 (194)
Q Consensus 114 ~~Gi~~~l~~~~~~~~vigve~ 135 (194)
-.-++...|+.+|+++++....
T Consensus 316 Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 316 NAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred HHHHHHHHHHhCCCCcEEEEEC
Confidence 5556677888999999987643
No 101
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.73 E-value=9 Score=30.58 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=57.0
Q ss_pred HHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcC
Q 038938 21 AEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSG 98 (194)
Q Consensus 21 a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~ 98 (194)
++++....+|++ |+....|..|...+..|+.+|.+.++++. .+.+|.+ +++-|. ..++ +.+. ...+.+...
T Consensus 112 al~~~~~~~g~~---VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~-~~~~-~~~~~~~~~ 184 (280)
T TIGR03366 112 ALEAAGDLKGRR---VLVVGAGMLGLTAAAAAAAAGAARVVAAD--PSPDRRELALSFGATALAE-PEVL-AERQGGLQN 184 (280)
T ss_pred HHHhccCCCCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCcEecC-chhh-HHHHHHHhC
Confidence 333333346666 65556799999999999999998555552 2334433 333332 2222 1211 111333333
Q ss_pred C-CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 G-KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~-~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+ .+|.++-++|+..++.-. ++...+.-+++-+
T Consensus 185 ~~g~d~vid~~G~~~~~~~~---~~~l~~~G~iv~~ 217 (280)
T TIGR03366 185 GRGVDVALEFSGATAAVRAC---LESLDVGGTAVLA 217 (280)
T ss_pred CCCCCEEEECCCChHHHHHH---HHHhcCCCEEEEe
Confidence 2 489999999876654333 3334455555544
No 102
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.59 E-value=8.6 Score=31.43 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG 98 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~ 98 (194)
++...+.+|++ |+....|-.|..++..|+.+|.+-++++.. +.++.+ +.+-|. ..++. .+.. .. +.+..+
T Consensus 156 l~~~~~~~g~~---vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~--~~~~~~~~~~~ga~~~i~~-~~~~-~~~~~~~~~ 228 (339)
T cd08239 156 LRRVGVSGRDT---VLVVGAGPVGLGALMLARALGAEDVIGVDP--SPERLELAKALGADFVINS-GQDD-VQEIRELTS 228 (339)
T ss_pred HHhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEcC-Ccch-HHHHHHHhC
Confidence 33334566766 444457999999999999999993333332 233333 222332 22332 2222 32 444444
Q ss_pred C-CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 G-KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~-~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+ .+|.||-++|+...+. ..++...++-+++-+
T Consensus 229 ~~~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~~ 261 (339)
T cd08239 229 GAGADVAIECSGNTAARR---LALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCCEEEECCCCHHHHH---HHHHHhhcCCEEEEE
Confidence 3 5899999998765543 233333344455433
No 103
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.43 E-value=11 Score=31.44 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCch-H-HHHHcC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANP-K-IWKDSG 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~-~-i~~q~~ 98 (194)
+...+.+|++ |+...+|..|.+++..|+.+|.+-++.+.. +.+|.+ ++.-|. ..++..+.+... . +.+..+
T Consensus 180 ~~~~~~~g~~---VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 180 NTAKVEPGST---VAVFGLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred HhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhC
Confidence 3345667766 544467999999999999999953444422 223332 222232 223221111112 2 333344
Q ss_pred CCCCEEEEecCCchhH
Q 038938 99 GKFDALVAGIRTGGTI 114 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~ 114 (194)
+.+|.|+-++|+..++
T Consensus 255 ~g~d~vid~~g~~~~~ 270 (368)
T cd08300 255 GGVDYTFECIGNVKVM 270 (368)
T ss_pred CCCcEEEECCCChHHH
Confidence 4699999998864443
No 104
>PLN02740 Alcohol dehydrogenase-like
Probab=89.32 E-value=12 Score=31.41 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=52.5
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHh-hhcCCe-EecCCCCCC-CchH-HHHHc
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYK-IIVKMPNTYSIQRRM-SKIPNA-YLLQQHENP-ANPK-IWKDS 97 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~-~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~-~~~~-i~~q~ 97 (194)
+...+.+|++ |+....|.-|.+++..|+.+|.+ ++++.. +.+|.+ +..-|. .+++..+.. .... +.+..
T Consensus 192 ~~~~~~~g~~---VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~---~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 192 NTANVQAGSS---VAIFGLGAVGLAVAEGARARGASKIIGVDI---NPEKFEKGKEMGITDFINPKDSDKPVHERIREMT 265 (381)
T ss_pred hccCCCCCCE---EEEECCCHHHHHHHHHHHHCCCCcEEEEcC---ChHHHHHHHHcCCcEEEecccccchHHHHHHHHh
Confidence 3445677766 65556799999999999999985 444433 233333 333332 233321111 1112 33333
Q ss_pred CCCCCEEEEecCCchhHHHHHHHH
Q 038938 98 GGKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
++.+|.|+-++|+..++.-....+
T Consensus 266 ~~g~dvvid~~G~~~~~~~a~~~~ 289 (381)
T PLN02740 266 GGGVDYSFECAGNVEVLREAFLST 289 (381)
T ss_pred CCCCCEEEECCCChHHHHHHHHhh
Confidence 336999999999766554333333
No 105
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.08 E-value=5 Score=36.22 Aligned_cols=96 Identities=7% Similarity=0.060 Sum_probs=69.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCch
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGG 112 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GG 112 (194)
.++.+.-|..|+.+|-.-...|++++++-.+. ++.+ .++.|.... |-|..+++++++.+ .+.|.+|++++.=-
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~---~~v~~~~~~g~~v~--~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDI---SAVNLMRKYGYKVY--YGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEECCH---HHHHHHHhCCCeEE--EeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 49999999999999999999999987776542 3222 233342222 23444555777765 46899999998876
Q ss_pred hHHHHHHHHHhhCCCceEEEEec
Q 038938 113 TITGAEKFLKEKNLEMKVYGIES 135 (194)
Q Consensus 113 t~~Gi~~~l~~~~~~~~vigve~ 135 (194)
.-.-+....|+.+|+.+|+.-.-
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeC
Confidence 66677788888999999987543
No 106
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.96 E-value=12 Score=30.86 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=53.3
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeE-ecCCCCCCCchHHHHHcCCCCCEE
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAY-LLQQHENPANPKIWKDSGGKFDAL 104 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~-~~~~~~~~~~~~i~~q~~~~~d~v 104 (194)
..+|++ |+...+|..|.+....|+.+|.+-++++.. ++++.+ +.+-|.. .++ +.+....++.+ ..+.+|.|
T Consensus 167 ~~~g~~---VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi~-~~~~~~~~~~~-~~g~~D~v 239 (343)
T PRK09880 167 DLQGKR---VFVSGVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLVN-PQNDDLDHYKA-EKGYFDVS 239 (343)
T ss_pred CCCCCE---EEEECCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEec-CCcccHHHHhc-cCCCCCEE
Confidence 346655 544557999999999999999965444432 233333 3333432 222 22222111222 22358999
Q ss_pred EEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 105 VAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 105 v~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|-++|+..++.-....+ .+.-+++.+
T Consensus 240 id~~G~~~~~~~~~~~l---~~~G~iv~~ 265 (343)
T PRK09880 240 FEVSGHPSSINTCLEVT---RAKGVMVQV 265 (343)
T ss_pred EECCCCHHHHHHHHHHh---hcCCEEEEE
Confidence 99998755444333444 454455544
No 107
>PLN02827 Alcohol dehydrogenase-like
Probab=88.76 E-value=12 Score=31.37 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=52.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCC--CchH-HHHHc
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENP--ANPK-IWKDS 97 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~--~~~~-i~~q~ 97 (194)
+...+.+|++ |+....|--|...+..|+.+|.+.++.+... .+|.+ +.+-|. .+++ +.++ .... +.+..
T Consensus 187 ~~~~~~~g~~---VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~--~~~~~~a~~lGa~~~i~-~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 187 NVADVSKGSS---VVIFGLGTVGLSVAQGAKLRGASQIIGVDIN--PEKAEKAKTFGVTDFIN-PNDLSEPIQQVIKRMT 260 (378)
T ss_pred hhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEECCC--HHHHHHHHHcCCcEEEc-ccccchHHHHHHHHHh
Confidence 3445667766 5555679999999999999998755554322 23332 333332 2232 2211 1111 44444
Q ss_pred CCCCCEEEEecCCchhHHHHHHHH
Q 038938 98 GGKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
++.+|.|+-++|+..++.-....+
T Consensus 261 ~~g~d~vid~~G~~~~~~~~l~~l 284 (378)
T PLN02827 261 GGGADYSFECVGDTGIATTALQSC 284 (378)
T ss_pred CCCCCEEEECCCChHHHHHHHHhh
Confidence 446899999998765543333333
No 108
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.73 E-value=12 Score=31.01 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=55.3
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-h-hcCCe-EecCCCCCC-CchH-HHHHcC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-S-KIPNA-YLLQQHENP-ANPK-IWKDSG 98 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~-~~~~~-~~~~~~~~~-~~~~-i~~q~~ 98 (194)
.+.+.+|++ .+|...+|.-|..+...|+.+|.+++++.. +.++.. . +.-|. ..++ +.+. .... +.+..+
T Consensus 153 ~~~~~~g~~--VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi~-~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 153 VCSPKKGDS--VFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAFN-YKEEPDLDAALKRYFP 226 (348)
T ss_pred hcCCCCCCE--EEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEEE-CCCcccHHHHHHHHCC
Confidence 345667766 456667799999999999999998555433 233332 1 12332 2222 2221 2122 333334
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+.+|.++-++|+ .++ ...++...+.-+++-+
T Consensus 227 ~gvD~v~d~vG~-~~~---~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 227 EGIDIYFDNVGG-DML---DAALLNMKIHGRIAVC 257 (348)
T ss_pred CCcEEEEECCCH-HHH---HHHHHHhccCCEEEEE
Confidence 458999999984 333 3334444454455433
No 109
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.33 E-value=7.7 Score=35.18 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=67.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCch
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGG 112 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GG 112 (194)
.++.+..|..|+.+|..-.+.|++.+++-.+ +++.+ .++.|.... |.|...++++++.+ .+.|.+|+++..=-
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d---~~~v~~~~~~g~~v~--~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHD---PDHIETLRKFGMKVF--YGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECC---HHHHHHHHhcCCeEE--EEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 4999999999999999999999998877433 23322 222332222 23444455677765 46899999998877
Q ss_pred hHHHHHHHHHhhCCCceEEEE
Q 038938 113 TITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 113 t~~Gi~~~l~~~~~~~~vigv 133 (194)
.-.=+....|+++|+.+++.-
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEE
Confidence 777777888999999998764
No 110
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.30 E-value=14 Score=30.86 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=51.4
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCc-hH-HHHHcC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPAN-PK-IWKDSG 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~-~~-i~~q~~ 98 (194)
+...+.+|++ |+...+|.-|...+..|+.+|.+-++.+.. +.++.+ +++-|. ..++..+.... .. +.+..+
T Consensus 179 ~~~~~~~g~~---VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~--~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 179 NTAKVEEGDT---VAVFGLGGIGLSVIQGARMAKASRIIAIDI--NPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred HhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhC
Confidence 3445667766 544467999999999999999943343322 233333 332332 22221111111 12 444444
Q ss_pred CCCCEEEEecCCchhHHHHHHHH
Q 038938 99 GKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
+.+|.++-++|+..++.-....+
T Consensus 254 ~g~d~vid~~G~~~~~~~~~~~~ 276 (368)
T TIGR02818 254 GGVDYSFECIGNVNVMRAALECC 276 (368)
T ss_pred CCCCEEEECCCCHHHHHHHHHHh
Confidence 46899999998755543333333
No 111
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=88.19 E-value=7.3 Score=33.29 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHH--HHHHHHHcCCcEEEEe
Q 038938 3 LLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIG--LASIASSRGYKIIVKM 63 (194)
Q Consensus 3 ~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a--~A~~a~~~Gl~~~iv~ 63 (194)
.+|.|..+. ...+|...+.+|.+..|.. +.+|...|+..|+| +|.+. ..|.+.+++.
T Consensus 15 ~hp~gc~~~--v~~qi~~~~~~~~~~~ggK-~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 15 AHPVGCEAN--VKEQIEYVKAQGPIANGPK-KVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCHHHHHH--HHHHHHHHHhcCCcCCCCC-EEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 356666543 4677888888887755533 35777777777777 55555 6788877765
No 112
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.97 E-value=5 Score=30.00 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=62.0
Q ss_pred CCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh------------hhcCCeEecC-CC----CCCCch
Q 038938 29 PGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM------------SKIPNAYLLQ-QH----ENPANP 91 (194)
Q Consensus 29 ~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~------------~~~~~~~~~~-~~----~~~~~~ 91 (194)
.|.+ |-.-..|+-|.++|..++.+|++++.+-|...+..... ..+-+....+ +. .+..+.
T Consensus 35 ~g~t---vgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~ 111 (178)
T PF02826_consen 35 RGKT---VGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINA 111 (178)
T ss_dssp TTSE---EEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSH
T ss_pred CCCE---EEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeee
Confidence 4445 88889999999999999999999999988765443111 1222333222 11 111223
Q ss_pred HHHHHcCCCCCEEEEecCCchhHH--HHHHHHHhhCCCceEEEEec
Q 038938 92 KIWKDSGGKFDALVAGIRTGGTIT--GAEKFLKEKNLEMKVYGIES 135 (194)
Q Consensus 92 ~i~~q~~~~~d~vv~~vG~GGt~~--Gi~~~l~~~~~~~~vigve~ 135 (194)
+.++++ +++++++-++-|+.+- .+..+|++ ..+.-.+.++
T Consensus 112 ~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 112 EFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp HHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred eeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 366777 5899999999999964 55566653 3344444443
No 113
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.65 E-value=15 Score=30.63 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=59.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhc-CCeE-ecCCCCCCCchH-HHHHcCC-CCCEEEEecCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKI-PNAY-LLQQHENPANPK-IWKDSGG-KFDALVAGIRT 110 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~-~~~~-~~~~~~~~~~~~-i~~q~~~-~~d~vv~~vG~ 110 (194)
|+....|.-|+..+..++.+|...+|++.. ++.|.+ +++ -+.. ..+.-.+ .... +.+...+ .+|.+|-++|+
T Consensus 172 V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~--~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 172 VVVVGAGPIGLLAIALAKLLGASVVIVVDR--SPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEEEECCCC
Confidence 999999999999999999999999998843 445554 333 3322 2222121 2222 4455544 59999999996
Q ss_pred chhHHHHHHHHHhhCCC--ceEEEEec
Q 038938 111 GGTITGAEKFLKEKNLE--MKVYGIES 135 (194)
Q Consensus 111 GGt~~Gi~~~l~~~~~~--~~vigve~ 135 (194)
-.++.- +++...|. +-++|+-.
T Consensus 249 ~~~~~~---ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 249 PPALDQ---ALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHHH---HHHHhcCCCEEEEEeccC
Confidence 554444 44433443 55555543
No 114
>PRK05993 short chain dehydrogenase; Provisional
Probab=87.58 E-value=3.7 Score=32.73 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=45.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|...++.|.+++++.......... .+..-.++.-...++.... +.++..+++|.+|..+|
T Consensus 7 vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 7 ILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL-EAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 48888999999999999889999887775432111111 1111112222233332222 33334457999999887
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
.+
T Consensus 86 ~~ 87 (277)
T PRK05993 86 YG 87 (277)
T ss_pred cC
Confidence 65
No 115
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=87.48 E-value=15 Score=30.21 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCCCCCEEE
Q 038938 29 PGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGGKFDALV 105 (194)
Q Consensus 29 ~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~d~vv 105 (194)
++.+ |+...+|..|.+++..|+.+|.+.++++.. +.++.. .+.-+. .+++. .+..... +.+..++.+|.|+
T Consensus 175 ~~~~---vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08240 175 ADEP---VVIIGAGGLGLMALALLKALGPANIIVVDI--DEAKLEAAKAAGADVVVNG-SDPDAAKRIIKAAGGGVDAVI 248 (350)
T ss_pred CCCE---EEEECCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCcEEecC-CCccHHHHHHHHhCCCCcEEE
Confidence 4544 544467999999999999999965555532 233332 222221 22222 2222122 4444444699999
Q ss_pred EecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 106 AGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 106 ~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
-++|...++......+ .+.-+++.+
T Consensus 249 d~~g~~~~~~~~~~~l---~~~g~~v~~ 273 (350)
T cd08240 249 DFVNNSATASLAFDIL---AKGGKLVLV 273 (350)
T ss_pred ECCCCHHHHHHHHHHh---hcCCeEEEE
Confidence 9998766654444444 344455544
No 116
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.48 E-value=1.4 Score=30.70 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcCC-CCCEEEEecCCchhHHHHHHHH
Q 038938 45 GIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSGG-KFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 45 g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
|+..+..|+.+|.+++++.+ ++.|.+ .++-|....-.+++....+ |.+..++ .+|.||-++|++.++.-....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~- 78 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL- 78 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHH-
Confidence 67788889999955555554 333443 3334422222233333222 5555554 699999999988766544433
Q ss_pred HhhCCCceEEEEe
Q 038938 122 KEKNLEMKVYGIE 134 (194)
Q Consensus 122 ~~~~~~~~vigve 134 (194)
..+.-+++-+-
T Consensus 79 --l~~~G~~v~vg 89 (130)
T PF00107_consen 79 --LRPGGRIVVVG 89 (130)
T ss_dssp --EEEEEEEEEES
T ss_pred --hccCCEEEEEE
Confidence 34544554444
No 117
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.12 E-value=15 Score=30.02 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=55.6
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhc-CCe-EecCCCCCC-CchH-HHHHcC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKI-PNA-YLLQQHENP-ANPK-IWKDSG 98 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~-~~~-~~~~~~~~~-~~~~-i~~q~~ 98 (194)
...+++|++ .+|...+|.-|.+++..|+.+|.+++++... .++.+ ... -|. ..++ +.+. .... +.+..+
T Consensus 146 ~~~~~~g~~--VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~---~~~~~~~~~~lGa~~vi~-~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 146 VCKPKKGET--VFVSAASGAVGQLVGQLAKLKGCYVVGSAGS---DEKVDLLKNKLGFDDAFN-YKEEPDLDAALKRYFP 219 (338)
T ss_pred hcCCCCCCE--EEEecCccHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhcCCceeEE-cCCcccHHHHHHHhCC
Confidence 345667766 4666677999999999999999986555433 23322 211 232 2222 2221 2222 333333
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
..+|.|+-++|+ .++. ..++...+.-+++-+
T Consensus 220 ~gvd~v~d~~g~-~~~~---~~~~~l~~~G~iv~~ 250 (338)
T cd08295 220 NGIDIYFDNVGG-KMLD---AVLLNMNLHGRIAAC 250 (338)
T ss_pred CCcEEEEECCCH-HHHH---HHHHHhccCcEEEEe
Confidence 458999999875 3333 334444454455443
No 118
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.10 E-value=18 Score=30.75 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcCC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~~ 99 (194)
.+...+.+|++ |+...+|-.|..++..|+.+|.+.+++... .++|.+ +++-|...++...++.... +.+..++
T Consensus 178 ~~~~~~~~g~~---VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 178 AVTAGVGPGST---VYIAGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred HHhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCC
Confidence 33445667766 555778999999999999999987664432 233433 3334432222212222222 4444443
Q ss_pred -CCCEEEEecCCc
Q 038938 100 -KFDALVAGIRTG 111 (194)
Q Consensus 100 -~~d~vv~~vG~G 111 (194)
.+|.+|-++|+-
T Consensus 253 ~g~Dvvid~~G~~ 265 (393)
T TIGR02819 253 PEVDCAVDCVGFE 265 (393)
T ss_pred CCCcEEEECCCCc
Confidence 489999999874
No 119
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.72 E-value=13 Score=30.89 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=56.9
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCCC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGGK 100 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~~ 100 (194)
...+.+|++ .+|. .+|..|.+++..|+.+|.+.++.+... ..|.. .+.-+. .+++ +.+....+ +.+..+..
T Consensus 181 ~~~~~~g~~--vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~~--~~k~~~~~~~g~~~~i~-~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 181 VLKPRPGSS--IAVF-GAGAVGLAAVMAAKIAGCTTIIAVDIV--DSRLELAKELGATHVIN-PKEEDLVAAIREITGGG 254 (365)
T ss_pred hcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCcEEec-CCCcCHHHHHHHHhCCC
Confidence 344556655 3454 679999999999999999755544332 23332 222221 2222 22222222 33333446
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.|+-++|++.++.-....+ .+.-+++-+
T Consensus 255 ~d~vld~~g~~~~~~~~~~~l---~~~G~~v~~ 284 (365)
T cd08278 255 VDYALDTTGVPAVIEQAVDAL---APRGTLALV 284 (365)
T ss_pred CcEEEECCCCcHHHHHHHHHh---ccCCEEEEe
Confidence 999999999877655544444 344455544
No 120
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.52 E-value=16 Score=29.73 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=57.6
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCC-eEecCCCCCCCchH-HHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPN-AYLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~-~~~~~~~~~~~~~~-i~~q~~~ 99 (194)
+...+.+|.+ .+|. .+|..|.+++..|+.+|.+++++... .++.. .+..+ ..+++ +.++.... +.+..++
T Consensus 153 ~~~~l~~g~~--vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~s---~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 153 RRAGVTAGDT--VLVV-GAGPIGLGVIQVAKARGARVIVVDID---DERLEFARELGADDTIN-VGDEDVAARLRELTDG 225 (337)
T ss_pred HhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHhCCCEEec-CcccCHHHHHHHHhCC
Confidence 3445666755 3455 57888999999999999997666432 33332 11111 12222 22222222 4445443
Q ss_pred -CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 100 -KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.+|.++-++|+...+.-+...+ .+.-+++.+.
T Consensus 226 ~~vd~vld~~g~~~~~~~~~~~l---~~~G~~i~~g 258 (337)
T cd08261 226 EGADVVIDATGNPASMEEAVELV---AHGGRVVLVG 258 (337)
T ss_pred CCCCEEEECCCCHHHHHHHHHHH---hcCCEEEEEc
Confidence 4899999988755554444444 3444565543
No 121
>PRK12743 oxidoreductase; Provisional
Probab=86.30 E-value=5.6 Score=31.12 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=46.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.++|......|.+++++........+.. ....+ . ++.-...++.... +.++++ ++|+
T Consensus 5 vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~-~id~ 83 (256)
T PRK12743 5 AIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG-RIDV 83 (256)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC-CCCE
Confidence 588899999999999999999998877654332221111 11111 1 2222344443332 334443 7999
Q ss_pred EEEecCCch
Q 038938 104 LVAGIRTGG 112 (194)
Q Consensus 104 vv~~vG~GG 112 (194)
+|..+|...
T Consensus 84 li~~ag~~~ 92 (256)
T PRK12743 84 LVNNAGAMT 92 (256)
T ss_pred EEECCCCCC
Confidence 999988643
No 122
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.07 E-value=19 Score=30.00 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=49.1
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHh-hhcCCe-EecCCCCC-CCchH-HHHHc
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYK-IIVKMPNTYSIQRRM-SKIPNA-YLLQQHEN-PANPK-IWKDS 97 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~-~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~-~~~~~-i~~q~ 97 (194)
+.+.+.+|.+ |+...+|..|.+++..|+.+|.. ++++.+ ..++.+ +++-|. .+++..+. ..... +.+..
T Consensus 178 ~~~~~~~g~~---vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~---~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 178 NTAKVEPGST---VAVFGLGAVGLSAIMGAKIAGASRIIGVDI---NEDKFEKAKEFGATDFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred hhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHcCCCcEeccccccchHHHHHHHHh
Confidence 3455667766 55446799999999999999995 444433 223332 232332 22221111 11111 33333
Q ss_pred CCCCCEEEEecCCchhHHH
Q 038938 98 GGKFDALVAGIRTGGTITG 116 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~G 116 (194)
+..+|.|+-++|+..++.-
T Consensus 252 ~~g~d~vid~~g~~~~~~~ 270 (365)
T cd08277 252 GGGVDYSFECTGNADLMNE 270 (365)
T ss_pred CCCCCEEEECCCChHHHHH
Confidence 3468999999987654433
No 123
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=84.73 E-value=16 Score=29.86 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=53.8
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC-CCCCE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG-GKFDA 103 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~-~~~d~ 103 (194)
.+|++ .+|. .+|..|.++...|+.+|.+.++++. .+.++.. .++-|. .+++ +.++.... +.+... ..+|.
T Consensus 162 ~~g~~--vlV~-~~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 162 LVGED--VLIT-GAGPIGIMAAAVAKHVGARHVVITD--VNEYRLELARKMGATRAVN-VAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCCe--EEEE-CCCHHHHHHHHHHHHcCCCEEEEEc--CCHHHHHHHHHhCCcEEec-CccccHHHHHHHhcCCCCCCE
Confidence 35655 3554 5799999999999999996444442 3334433 222222 2222 22222222 333333 35999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|+-++|++.++..+...++ +.-+++-+
T Consensus 236 v~d~~g~~~~~~~~~~~l~---~~G~~v~~ 262 (341)
T PRK05396 236 GLEMSGAPSAFRQMLDNMN---HGGRIAML 262 (341)
T ss_pred EEECCCCHHHHHHHHHHHh---cCCEEEEE
Confidence 9998887666555555443 34344444
No 124
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=84.55 E-value=9.3 Score=31.55 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=66.3
Q ss_pred HHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCCeEecCCCCCCCchH-HHHHc
Q 038938 21 AEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPNAYLLQQHENPANPK-IWKDS 97 (194)
Q Consensus 21 a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~~~~~~~~~~~~~~~-i~~q~ 97 (194)
+++-|+.++|.+ .+|.+.+|-.|.-+--.|+..|.+++-+.. ..+|.+ .++-|.--.-.|..+...+ +.+.+
T Consensus 142 Ll~igqpk~Get--vvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~ 216 (340)
T COG2130 142 LLDIGQPKAGET--VVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGIDYKAEDFAQALKEAC 216 (340)
T ss_pred HHHhcCCCCCCE--EEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeeecCcccHHHHHHHHC
Confidence 356677778877 689999999999999999999999988875 446655 3323322222344443333 55556
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEE
Q 038938 98 GGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYG 132 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vig 132 (194)
+..+|..|-.||+==+=+ .+..+++.-||+.
T Consensus 217 P~GIDvyfeNVGg~v~DA----v~~~ln~~aRi~~ 247 (340)
T COG2130 217 PKGIDVYFENVGGEVLDA----VLPLLNLFARIPV 247 (340)
T ss_pred CCCeEEEEEcCCchHHHH----HHHhhccccceee
Confidence 656999999986533322 2334455555543
No 125
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.43 E-value=5.7 Score=30.43 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHc---CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 10 PSRIACSMIKDAEDK---GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 10 K~R~a~~~~~~a~~~---g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
--||.+..+..+.+. +..-+|++ ++.-..||.|..+|.....+|.+++++
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~---v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKT---VAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 357788888887776 33335556 888899999999999999999988754
No 126
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.10 E-value=20 Score=29.20 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC-CCC
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG-GKF 101 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~-~~~ 101 (194)
.+.++.. .+|...++..|.+++..|+.+|.+++++.... ++.. .+.-+. .+++ +.+..... +.+..+ ..+
T Consensus 162 ~~~~~~~--vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 162 GLKPGDW--VVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD---EKLELAKELGADAFVD-FKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCCCE--EEEECCCchHHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHcCCcEEEc-CCCccHHHHHHHHhcCCCC
Confidence 4555644 45666777799999999999999876665432 2322 222221 1222 22222222 444443 358
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|.|+-+.|++.++.-..+. ..+.-+++-+
T Consensus 236 d~vl~~~~~~~~~~~~~~~---l~~~g~~v~~ 264 (341)
T cd08297 236 HAVVVTAVSAAAYEQALDY---LRPGGTLVCV 264 (341)
T ss_pred CEEEEcCCchHHHHHHHHH---hhcCCEEEEe
Confidence 9999877777665444443 3455555544
No 127
>PRK06057 short chain dehydrogenase; Provisional
Probab=84.08 E-value=6 Score=30.90 Aligned_cols=76 Identities=8% Similarity=0.146 Sum_probs=44.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HH----HHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IW----KDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~----~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.+++..-.+.|.+++++.......++...+....++.....++.... ++ ++. +++|.||..+|
T Consensus 10 vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~vi~~ag 88 (255)
T PRK06057 10 AVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETY-GSVDIAFNNAG 88 (255)
T ss_pred EEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHc-CCCCEEEECCC
Confidence 5899999999999999999999988776543211112112212222222233332222 22 333 37999999987
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 89 ~~ 90 (255)
T PRK06057 89 IS 90 (255)
T ss_pred cC
Confidence 64
No 128
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.05 E-value=6.8 Score=30.39 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=44.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-C-eEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-N-AYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~-~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..|+.-|.++|...++.|.+++++-......++.. .+.. . ..+.-...++.... +.+++++++|.+
T Consensus 8 ~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~iD~l 87 (227)
T PRK08862 8 ILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRAPDVL 87 (227)
T ss_pred EEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 478888888999999999999998766533221111111 1111 1 12211122232222 455665479999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 i~nag~~ 94 (227)
T PRK08862 88 VNNWTSS 94 (227)
T ss_pred EECCccC
Confidence 9998743
No 129
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=83.34 E-value=23 Score=28.82 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=56.0
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~ 99 (194)
+...+.+|.+ .+|. .+|-.|.+++..|+.+|.+.+++...+ .++.. ...-+. .+++ ++++.... +.+..++
T Consensus 159 ~~~~~~~g~~--VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~s--~~~~~~~~~~g~~~~~~-~~~~~~~~~i~~~~~~ 232 (343)
T cd08235 159 RKAGIKPGDT--VLVI-GAGPIGLLHAMLAKASGARKVIVSDLN--EFRLEFAKKLGADYTID-AAEEDLVEKVRELTDG 232 (343)
T ss_pred HhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC--HHHHHHHHHhCCcEEec-CCccCHHHHHHHHhCC
Confidence 3345667755 4555 578899999999999999944444322 22222 111121 2222 23332222 4444543
Q ss_pred -CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 100 -KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.+|.|+-++|+...+......+ .+.-+++.+.
T Consensus 233 ~~vd~vld~~~~~~~~~~~~~~l---~~~g~~v~~~ 265 (343)
T cd08235 233 RGADVVIVATGSPEAQAQALELV---RKGGRILFFG 265 (343)
T ss_pred cCCCEEEECCCChHHHHHHHHHh---hcCCEEEEEe
Confidence 4899999988664544444444 3444555543
No 130
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=83.32 E-value=25 Score=29.21 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCC--CCchH-HHHHcC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHEN--PANPK-IWKDSG 98 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~--~~~~~-i~~q~~ 98 (194)
...+.+|++ |+...+|..|.+++..|+.+|..-++++... .++.+ ++.-|. .+++ +.. +.... +.+..+
T Consensus 182 ~~~~~~g~~---VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~--~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 182 VAKVKKGST---VAIFGLGAVGLAVAEGARIRGASRIIGVDLN--PSKFEQAKKFGVTEFVN-PKDHDKPVQEVIAEMTG 255 (369)
T ss_pred hcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHcCCceEEc-ccccchhHHHHHHHHhC
Confidence 345667766 5555679999999999999998433444322 23332 333332 2222 121 11112 333344
Q ss_pred CCCCEEEEecCCchhHHHHHHHH
Q 038938 99 GKFDALVAGIRTGGTITGAEKFL 121 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l 121 (194)
+.+|.++-++|+..++.-....+
T Consensus 256 ~~~d~vid~~G~~~~~~~~~~~~ 278 (369)
T cd08301 256 GGVDYSFECTGNIDAMISAFECV 278 (369)
T ss_pred CCCCEEEECCCChHHHHHHHHHh
Confidence 46899999988765443333333
No 131
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=83.08 E-value=22 Score=28.35 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=53.9
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYK-IIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~-~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~ 98 (194)
+...+.++.+ .+|. .+|-.|.+++..|+.+|.+ .+++.+ . .++.. ...-+. .+.+ ..++.... +.+..+
T Consensus 123 ~~~~~~~~~~--vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~-~--~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~ 195 (312)
T cd08269 123 RRGWIRAGKT--VAVI-GAGFIGLLFLQLAAAAGARRVIAIDR-R--PARLALARELGATEVVT-DDSEAIVERVRELTG 195 (312)
T ss_pred HhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCcEEEEECC-C--HHHHHHHHHhCCceEec-CCCcCHHHHHHHHcC
Confidence 3445566655 3555 5788999999999999999 544432 2 22322 222221 1111 11222222 444444
Q ss_pred -CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 -GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 -~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
..+|.++-++|++....-. ++...+.-+++-+
T Consensus 196 ~~~vd~vld~~g~~~~~~~~---~~~l~~~g~~~~~ 228 (312)
T cd08269 196 GAGADVVIEAVGHQWPLDLA---GELVAERGRLVIF 228 (312)
T ss_pred CCCCCEEEECCCCHHHHHHH---HHHhccCCEEEEE
Confidence 2589999988765544333 3333444455444
No 132
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.93 E-value=23 Score=28.54 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=56.0
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~ 99 (194)
+...+.+|++ .+|...+|..|.++...|+.+|.+++++... .++.+ .+.-|. ..++ +.++.... +.+..+.
T Consensus 137 ~~~~~~~g~~--vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s---~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 137 EICKPKAGET--VVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS---DDKVAWLKELGFDAVFN-YKTVSLEEALKEAAPD 210 (329)
T ss_pred HhcCCCCCCE--EEEecCccHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEEe-CCCccHHHHHHHHCCC
Confidence 3445667766 3466668999999999999999986555432 23332 222232 2222 22222222 3333344
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.|+-++|+ .++. ..++...+.-+++-+
T Consensus 211 gvd~vld~~g~-~~~~---~~~~~l~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYFDNVGG-EFSS---TVLSHMNDFGRVAVC 240 (329)
T ss_pred CcEEEEECCCH-HHHH---HHHHhhccCCEEEEE
Confidence 58999988875 4433 334334455455543
No 133
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.87 E-value=24 Score=28.64 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=57.1
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHc-C
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDS-G 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~-~ 98 (194)
+.+.+.+|++ .+|...+|--|.+++..|+.+|.+++++... .++.. ..+-|. ..++ +.++..+. ...+. +
T Consensus 132 ~~~~~~~g~~--VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s---~~~~~~~~~lGa~~vi~-~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 132 EICGVKGGET--VMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS---DEKVAYLKKLGFDVAFN-YKTVKSLEETLKKASP 205 (325)
T ss_pred HHhCCCCCCE--EEEeCCccHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEEe-ccccccHHHHHHHhCC
Confidence 4455677766 3466657999999999999999986655442 23332 222332 2222 22221222 23333 2
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
..+|.|+-++|+. .+ ...++...+.-+++-+
T Consensus 206 ~gvdvv~d~~G~~-~~---~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 206 DGYDCYFDNVGGE-FS---NTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCeEEEEECCCHH-HH---HHHHHHhCcCcEEEEe
Confidence 3589999988753 22 3444445566666544
No 134
>PRK08177 short chain dehydrogenase; Provisional
Probab=82.72 E-value=12 Score=28.61 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=46.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcC-CCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSG-GKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~-~~~d~vv~~vG~G 111 (194)
.+|+..+|.-|.++|..-++.|.+++++-..............-.++.-...++.... +.+++. +++|.||..+|..
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 4888999999999999999999988777654322222211111112211222332222 455543 3699999998775
No 135
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.94 E-value=26 Score=28.52 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=52.4
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCCCCCE
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGGKFDA 103 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~~~d~ 103 (194)
.+.++.+ |+...+|..|.+++..|+.+|.+.+++.+. .++.. ..+-+. .+++ +.+......+.++. .+|.
T Consensus 160 ~~~~~~~---vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~-~~d~ 231 (333)
T cd08296 160 GAKPGDL---VAVQGIGGLGHLAVQYAAKMGFRTVAISRG---SDKADLARKLGAHHYID-TSKEDVAEALQELG-GAKL 231 (333)
T ss_pred CCCCCCE---EEEECCcHHHHHHHHHHHHCCCeEEEEeCC---hHHHHHHHHcCCcEEec-CCCccHHHHHHhcC-CCCE
Confidence 4556655 544448999999999999999986555442 22222 222221 2222 22222111122233 5899
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
++.++|++..+.-.... ..+.-+++-+
T Consensus 232 vi~~~g~~~~~~~~~~~---l~~~G~~v~~ 258 (333)
T cd08296 232 ILATAPNAKAISALVGG---LAPRGKLLIL 258 (333)
T ss_pred EEECCCchHHHHHHHHH---cccCCEEEEE
Confidence 99887766555444333 3444455443
No 136
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=81.91 E-value=25 Score=28.75 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=54.5
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC-CCCC
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG-GKFD 102 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~-~~~d 102 (194)
+.+|++ .+|. .+|-.|.+++..|+.+|.+.++++.. +.++.+ .++.+. ..++ +.++.... +.+..+ ..+|
T Consensus 159 ~~~g~~--vlI~-~~g~vg~~a~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v~-~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 159 PISGKS--VLVT-GAGPIGLMAIAVAKASGAYPVIVSDP--NEYRLELAKKMGATYVVN-PFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCCE--EEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCcEEEc-ccccCHHHHHHHhcCCCCCC
Confidence 445655 3554 46889999999999999985555532 344443 222222 2222 22222222 444443 3589
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 103 ALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.++-++|++.++.-+...+ .+.-+++-+-
T Consensus 233 ~vld~~g~~~~~~~~~~~l---~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSGAPKALEQGLQAV---TPGGRVSLLG 261 (340)
T ss_pred EEEECCCCHHHHHHHHHhh---cCCCEEEEEc
Confidence 9999888765544333333 4444555543
No 137
>PRK06483 dihydromonapterin reductase; Provisional
Probab=81.73 E-value=15 Score=28.27 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=43.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|--|.++|..-+..|.+++++-....+......+....++.-...++.... +.++. +++|.+|..+|
T Consensus 5 vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~lv~~ag 83 (236)
T PRK06483 5 ILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHT-DGLRAIIHNAS 83 (236)
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhC-CCccEEEECCc
Confidence 5889999999999999988999988876543222111111111122221222332222 22333 36999999987
Q ss_pred C
Q 038938 110 T 110 (194)
Q Consensus 110 ~ 110 (194)
.
T Consensus 84 ~ 84 (236)
T PRK06483 84 D 84 (236)
T ss_pred c
Confidence 5
No 138
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=81.42 E-value=8.8 Score=30.06 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=43.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCeE-ecCCCCCCCchH-----HHHHcCCCCCEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNAY-LLQQHENPANPK-----IWKDSGGKFDALV 105 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv 105 (194)
.+|+.++|.-|.++|..-.+.|.+++++-.......+.. .+....+ +.-...++.... +.+++ +++|.+|
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~-g~id~li 81 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELL-GGIDALV 81 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhc-CCCCEEE
Confidence 489999999999999999999998766543321111111 1111111 111222222222 33334 3799999
Q ss_pred EecCCc
Q 038938 106 AGIRTG 111 (194)
Q Consensus 106 ~~vG~G 111 (194)
..+|..
T Consensus 82 ~naG~~ 87 (259)
T PRK08340 82 WNAGNV 87 (259)
T ss_pred ECCCCC
Confidence 998864
No 139
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=81.29 E-value=27 Score=28.16 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=53.3
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhc-CCe-EecCCCCCCCchH-HHHHcCCC
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKI-PNA-YLLQQHENPANPK-IWKDSGGK 100 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~-~~~-~~~~~~~~~~~~~-i~~q~~~~ 100 (194)
+.+.++.+ .+|...+|-.|.+++..|+++|.+.+++.+.. .+.. ... .+. .+++ +.++.... +.+..++.
T Consensus 141 ~~~~~~~~--vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~---~~~~~~~~~~g~~~~~~-~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGET--VVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD---EKCRWLVEELGFDAAIN-YKTPDLAEALKEAAPDG 214 (329)
T ss_pred cCCCCCCE--EEEecCcchHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhhcCCceEEe-cCChhHHHHHHHhccCC
Confidence 34556655 35666689999999999999999866654322 2221 211 221 1111 12222122 33334446
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.++-++|+. + +-..++...+.-+++-+
T Consensus 215 ~d~vi~~~g~~-~---~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 215 IDVYFDNVGGE-I---LDAALTLLNKGGRIALC 243 (329)
T ss_pred ceEEEEcchHH-H---HHHHHHhcCCCceEEEE
Confidence 99999988753 2 33344444444455443
No 140
>PRK07060 short chain dehydrogenase; Provisional
Probab=80.87 E-value=9.5 Score=29.34 Aligned_cols=76 Identities=22% Similarity=0.245 Sum_probs=43.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcCCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~G 111 (194)
.+|...+|.-|..++...++.|.+++++.................++.-.+.++.... +++.. +++|.||..+|..
T Consensus 12 ~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~d~vi~~ag~~ 88 (245)
T PRK07060 12 VLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAA-GAFDGLVNCAGIA 88 (245)
T ss_pred EEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHh-CCCCEEEECCCCC
Confidence 4888888999999999999999987666543211111111111112221222222111 33333 3689999998864
No 141
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=80.56 E-value=31 Score=28.43 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=52.8
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCch----HHHHHcCC
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGY-KIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANP----KIWKDSGG 99 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl-~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~----~i~~q~~~ 99 (194)
..+|.+ .+|. .+|..|.+++..|+.+|. +++++.+ +.++.. ...-+. .+++ +.+.... .+.+..++
T Consensus 175 ~~~g~~--vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~ 247 (361)
T cd08231 175 VGAGDT--VVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG---SPERLELAREFGADATID-IDELPDPQRRAIVRDITGG 247 (361)
T ss_pred CCCCCE--EEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCC
Confidence 335655 3555 579999999999999999 5544432 223322 222222 1222 1222111 24444443
Q ss_pred -CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 -KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.++-++|++.++. ..++...+.-+++.+
T Consensus 248 ~~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~~ 279 (361)
T cd08231 248 RGADVVIEASGHPAAVP---EGLELLRRGGTYVLV 279 (361)
T ss_pred CCCcEEEECCCChHHHH---HHHHHhccCCEEEEE
Confidence 5899999988755443 334444455566544
No 142
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=80.43 E-value=26 Score=28.46 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=62.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcCCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSGGK 100 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~~~ 100 (194)
+-..++||.+ ++|-+..|--|+.+...++..|...+..... .+|.. +.+.|..++-.|++.+... +..-..++
T Consensus 140 e~y~vkpGht--VlvhaAAGGVGlll~Ql~ra~~a~tI~~asT---aeK~~~akenG~~h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 140 EAYNVKPGHT--VLVHAAAGGVGLLLCQLLRAVGAHTIATAST---AEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred HhcCCCCCCE--EEEEeccccHHHHHHHHHHhcCcEEEEEecc---HHHHHHHHhcCCcceeeccchhHHHHHHhccCCC
Confidence 4556789987 6788999999999999999999877665543 23333 6666766555565554322 33333344
Q ss_pred -CCEEEEecCCchhHHHHHHHHHh
Q 038938 101 -FDALVAGIRTGGTITGAEKFLKE 123 (194)
Q Consensus 101 -~d~vv~~vG~GGt~~Gi~~~l~~ 123 (194)
+|+++-++|.-.+- +-...||.
T Consensus 215 GVd~vyDsvG~dt~~-~sl~~Lk~ 237 (336)
T KOG1197|consen 215 GVDAVYDSVGKDTFA-KSLAALKP 237 (336)
T ss_pred CceeeeccccchhhH-HHHHHhcc
Confidence 99999999865444 44456653
No 143
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.35 E-value=8.9 Score=29.98 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=43.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhc-C-CeE-ecCCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKI-P-NAY-LLQQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~-~-~~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..++.-|.++|...++.|.+++++-...........+. . ... +.-...++.... +.+++ +++|++|.
T Consensus 11 ~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~iD~lv~ 89 (251)
T PRK12481 11 AIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM-GHIDILIN 89 (251)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc-CCCCEEEE
Confidence 588999999999999999999999877644321111111111 1 111 111222332222 33334 37999999
Q ss_pred ecCCc
Q 038938 107 GIRTG 111 (194)
Q Consensus 107 ~vG~G 111 (194)
.+|..
T Consensus 90 ~ag~~ 94 (251)
T PRK12481 90 NAGII 94 (251)
T ss_pred CCCcC
Confidence 98864
No 144
>PRK05884 short chain dehydrogenase; Provisional
Probab=80.18 E-value=10 Score=29.11 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=44.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCC-eEecCCCCCCCchH-HHHHcCCCCCEEEEecCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPN-AYLLQQHENPANPK-IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~-~~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~ 110 (194)
.+|+..+|.-|.++|..-.+.|.+++++-.. .++.. .++.+ .++.-...++.... ++++...++|.+|..+|.
T Consensus 3 vlItGas~giG~~ia~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~ 79 (223)
T PRK05884 3 VLVTGGDTDLGRTIAEGFRNDGHKVTLVGAR---RDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAP 79 (223)
T ss_pred EEEEeCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCc
Confidence 4888899999999999999999988877543 22221 12111 12221223332222 445544468999988763
No 145
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=80.09 E-value=33 Score=28.48 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=55.3
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCC--CchH-HHHHcC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENP--ANPK-IWKDSG 98 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~--~~~~-i~~q~~ 98 (194)
...+.+|.+ .+| ..+|..|.+++..|+.+|.+.++.+.. +.++.. ..+-|. .+++. .+. .... +.+..+
T Consensus 178 ~~~~~~g~~--vlI-~g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v~~-~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 178 TAKVTPGST--CAV-FGLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGATECINP-RDQDKPIVEVLTEMTD 251 (365)
T ss_pred ccCCCCCCE--EEE-ECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCCeeccc-ccccchHHHHHHHHhC
Confidence 344566755 345 468999999999999999986555432 223332 222221 12221 111 1111 334444
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhC-CCceEEEE
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKN-LEMKVYGI 133 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~-~~~~vigv 133 (194)
+.+|.|+-++|.+-++.- .++... +.-+++-+
T Consensus 252 ~~~d~vid~~g~~~~~~~---~~~~l~~~~G~~v~~ 284 (365)
T cd05279 252 GGVDYAFEVIGSADTLKQ---ALDATRLGGGTSVVV 284 (365)
T ss_pred CCCcEEEECCCCHHHHHH---HHHHhccCCCEEEEE
Confidence 569999999876555443 344444 55555544
No 146
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.09 E-value=13 Score=28.93 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|--|.++|..-...|.+++++........+...+..-.++.-...++.... +.+.. +++|.+|..+|
T Consensus 10 ~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~id~li~~ag 88 (255)
T PRK06463 10 ALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF-GRVDVLVNNAG 88 (255)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc-CCCCEEEECCC
Confidence 4888889999999999999999987766543321111111111112221223332222 33333 37999999988
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 89 ~~ 90 (255)
T PRK06463 89 IM 90 (255)
T ss_pred cC
Confidence 64
No 147
>PRK08643 acetoin reductase; Validated
Probab=80.07 E-value=12 Score=29.11 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhc-CCe-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKI-PNA-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~-~~~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|....+.|.+++++.......++.. .+. ... ++.-...++.... +.++. +++|.+
T Consensus 5 ~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~id~v 83 (256)
T PRK08643 5 ALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTF-GDLNVV 83 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 488889999999999999999998766654322211211 111 111 2222233333222 33334 479999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 84 i~~ag~~ 90 (256)
T PRK08643 84 VNNAGVA 90 (256)
T ss_pred EECCCCC
Confidence 9998864
No 148
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=79.99 E-value=31 Score=28.07 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcC-CCCC
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSG-GKFD 102 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~-~~~d 102 (194)
.+.+|.+ .+|. .+|..|.+++..|+.+|+..++++.. +.++.. ..+-|....+ +++..... +.+..+ ..+|
T Consensus 164 ~~~~~~~--vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 164 QVRPGDT--VAVI-GCGPVGLCAVLSAQVLGAARVFAVDP--VPERLERAAALGAEPIN-FEDAEPVERVREATEGRGAD 237 (344)
T ss_pred CCccCCE--EEEE-CCcHHHHHHHHHHHHcCCceEEEEcC--CHHHHHHHHHhCCeEEe-cCCcCHHHHHHHHhCCCCCC
Confidence 3455655 3455 68999999999999999843344422 233332 2223322222 22222222 555554 3599
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 103 ALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.++-++|+...+ ...++...+.-+++.+-
T Consensus 238 vvid~~~~~~~~---~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVGGAAAL---DLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCCCHHHH---HHHHHhcccCCEEEEEC
Confidence 999998765443 33444444555666553
No 149
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.51 E-value=10 Score=30.66 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=44.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|...++.|.+++++.......+... .+..+ . ++.-...++.... +.++.+ ++|++
T Consensus 43 vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g-~id~l 121 (293)
T PRK05866 43 ILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG-GVDIL 121 (293)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC-CCCEE
Confidence 588888999999999999999998877655421111111 11111 1 1211222332222 333443 79999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|.+
T Consensus 122 i~~AG~~ 128 (293)
T PRK05866 122 INNAGRS 128 (293)
T ss_pred EECCCCC
Confidence 9999875
No 150
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.44 E-value=32 Score=28.00 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=54.4
Q ss_pred cCCCCCC--CccceEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHh--hhcCCe-EecCCCCCCCchH-HHHH
Q 038938 24 KGSISPG--KQYNVLVEITSANAGIGLASIASSRGY-KIIVKMPNTYSIQRRM--SKIPNA-YLLQQHENPANPK-IWKD 96 (194)
Q Consensus 24 ~g~~~~g--~~~~~vv~aSsGN~g~a~A~~a~~~Gl-~~~iv~p~~~~~~k~~--~~~~~~-~~~~~~~~~~~~~-i~~q 96 (194)
.+.+.+| ++ .+|...+|..|.++...|+.+|. +++++.+. .++.+ .++-|. ..++ +.++.... +.+.
T Consensus 147 ~~~~~~g~~~~--VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s---~~~~~~~~~~lGa~~vi~-~~~~~~~~~i~~~ 220 (345)
T cd08293 147 KGHITPGANQT--MVVSGAAGACGSLAGQIGRLLGCSRVVGICGS---DEKCQLLKSELGFDAAIN-YKTDNVAERLREL 220 (345)
T ss_pred hccCCCCCCCE--EEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHhcCCcEEEE-CCCCCHHHHHHHH
Confidence 3445555 44 45666779999999999999998 56555432 23322 221232 1222 22222222 3333
Q ss_pred cCCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 97 SGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 97 ~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+..+|.|+-++|+.. + ...++...+.-+++-+
T Consensus 221 ~~~gvd~vid~~g~~~-~---~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 221 CPEGVDVYFDNVGGEI-S---DTVISQMNENSHIILC 253 (345)
T ss_pred CCCCceEEEECCCcHH-H---HHHHHHhccCCEEEEE
Confidence 3445899999888642 2 2344444555555544
No 151
>PRK06182 short chain dehydrogenase; Validated
Probab=79.31 E-value=10 Score=29.93 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=44.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCCeEecCCCCCCCchH-HHHH---cCCCCCEEEEec
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPNAYLLQQHENPANPK-IWKD---SGGKFDALVAGI 108 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~~~~~~~~~~~~~~~-i~~q---~~~~~d~vv~~v 108 (194)
.+|+..+|.-|.++|......|.+++++.... ++.. .+..-.++.-...++.... ++++ ..+.+|.+|..+
T Consensus 6 vlItGasggiG~~la~~l~~~G~~V~~~~r~~---~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 6 ALVTGASSGIGKATARRLAAQGYTVYGAARRV---DKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 48888899999999999999999887765432 2221 1111112211222332222 2222 124799999999
Q ss_pred CCch
Q 038938 109 RTGG 112 (194)
Q Consensus 109 G~GG 112 (194)
|.+.
T Consensus 83 g~~~ 86 (273)
T PRK06182 83 GYGS 86 (273)
T ss_pred CcCC
Confidence 8653
No 152
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.89 E-value=14 Score=28.17 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=45.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hh-cCC-eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SK-IPN-AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~-~~~-~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.+++-.....|.+++++........... .+ ... .++.-...++.... +.+++ +++|.
T Consensus 9 vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~~id~ 87 (249)
T PRK12825 9 ALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF-GRIDI 87 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc-CCCCE
Confidence 589999999999999999999999766555543221111 11 111 12222333333322 23333 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||..+|..
T Consensus 88 vi~~ag~~ 95 (249)
T PRK12825 88 LVNNAGIF 95 (249)
T ss_pred EEECCccC
Confidence 99998843
No 153
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.65 E-value=13 Score=28.65 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=45.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-CeE-ecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-NAY-LLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~~~-~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|--|.++|......|.+++++........+.. .+.. ... +.-...++.... +.++.+ ++|.|
T Consensus 9 vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~-~id~v 87 (250)
T PRK07774 9 AIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG-GIDYL 87 (250)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC-CCCEE
Confidence 489999999999999999999998877754322211111 1111 111 222222222211 344454 79999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 i~~ag~~ 94 (250)
T PRK07774 88 VNNAAIY 94 (250)
T ss_pred EECCCCc
Confidence 9999864
No 154
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.60 E-value=30 Score=28.87 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=48.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eEecCCCCCCCchH----HHHHcCCCCCEEEEecCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AYLLQQHENPANPK----IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~~~~~~~~~~~~~----i~~q~~~~~d~vv~~vG~ 110 (194)
|..-.+|++|-|+|..+++-|.++++...+.--...+...+.+ .|++ .-.-|.+.. +.+-+. .-|.||.++=+
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp-~i~lp~~l~at~Dl~~a~~-~ad~iv~avPs 81 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLP-GILLPPNLKATTDLAEALD-GADIIVIAVPS 81 (329)
T ss_pred EEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccC-CccCCcccccccCHHHHHh-cCCEEEEECCh
Confidence 7788899999999999999999999988754333333322222 2443 222333222 333343 47888888866
Q ss_pred chhH
Q 038938 111 GGTI 114 (194)
Q Consensus 111 GGt~ 114 (194)
-++-
T Consensus 82 ~~~r 85 (329)
T COG0240 82 QALR 85 (329)
T ss_pred HHHH
Confidence 6654
No 155
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=78.48 E-value=33 Score=27.62 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcC-CCC
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSG-GKF 101 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~-~~~ 101 (194)
+.+.++.+ .+|. .+|..|.+++..|+.+|.+++++.... ..++.. .+.-+.... .+.++.... +.+..+ ..+
T Consensus 160 ~~~~~g~~--vlI~-g~g~~g~~~~~la~~~G~~v~~~~~~~-~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~v 234 (306)
T cd08258 160 SGIRPGDT--VVVF-GPGPIGLLAAQVAKLQGATVVVVGTEK-DEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDGA 234 (306)
T ss_pred cCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCCC
Confidence 44556655 4564 579999999999999999964442222 233332 222232111 222222222 333343 358
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
|.++-++|++-++.- .++...+.-+++-+-
T Consensus 235 d~vld~~g~~~~~~~---~~~~l~~~G~~v~~g 264 (306)
T cd08258 235 DVVIECSGAVPALEQ---ALELLRKGGRIVQVG 264 (306)
T ss_pred CEEEECCCChHHHHH---HHHHhhcCCEEEEEc
Confidence 999999876544433 333344555665443
No 156
>PRK08264 short chain dehydrogenase; Validated
Probab=78.22 E-value=14 Score=28.33 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchH-HHHHcCCCCCEEEEecCC
Q 038938 35 VLVEITSANAGIGLASIASSRGY-KIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPK-IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl-~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~ 110 (194)
.+|...+|.-|.++|....+.|. +++++.... .+........ ++.-...++.... ++++.+ ++|.||..+|.
T Consensus 9 vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~id~vi~~ag~ 83 (238)
T PRK08264 9 VLVTGANRGIGRAFVEQLLARGAAKVYAAARDP---ESVTDLGPRVVPLQLDVTDPASVAAAAEAAS-DVTILVNNAGI 83 (238)
T ss_pred EEEECCCchHHHHHHHHHHHCCcccEEEEecCh---hhhhhcCCceEEEEecCCCHHHHHHHHHhcC-CCCEEEECCCc
Confidence 48888999999999999999999 766665432 1211111111 1111222222222 455553 68999999987
No 157
>PRK06953 short chain dehydrogenase; Provisional
Probab=78.12 E-value=15 Score=27.91 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=44.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcC-CCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSG-GKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~-~~~d~vv~~vG~G 111 (194)
.+|+..+|.-|.++|-.-.+.|.+++++.......++. ......++.-...+..... +++++. .++|.||..+|..
T Consensus 4 vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~~ 81 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL-QALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGVY 81 (222)
T ss_pred EEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH-HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 48888899999999988888899877765442222222 1111112222233333222 333443 3699999988764
No 158
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.10 E-value=12 Score=28.72 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=44.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-Ce-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-NA-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|...+|..|.++|....+.|.+++++........... .+.. .. ++.-...++.... +.+.. +++|.+
T Consensus 9 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~l 87 (241)
T PRK07454 9 ALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF-GCPDVL 87 (241)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 488888999999999999999998777664321111111 1111 11 1221223332222 33333 369999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 v~~ag~~ 94 (241)
T PRK07454 88 INNAGMA 94 (241)
T ss_pred EECCCcc
Confidence 9998864
No 159
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=78.09 E-value=15 Score=28.72 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCCeE--ecCCCCCCCchH-----HHHHcCCCCCEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPNAY--LLQQHENPANPK-----IWKDSGGKFDALV 105 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~~~--~~~~~~~~~~~~-----i~~q~~~~~d~vv 105 (194)
.+|+..+|.-|.++|..-.+.|.+++++-... ..+... .+..... +.-...++.... +.++++ ++|.+|
T Consensus 13 ~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~-~~D~li 90 (253)
T PRK08993 13 AVVTGCDTGLGQGMALGLAEAGCDIVGINIVE-PTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFG-HIDILV 90 (253)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEecCcc-hHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC-CCCEEE
Confidence 48999999999999999999999877653222 111111 1111111 111122222222 344443 799999
Q ss_pred EecCCc
Q 038938 106 AGIRTG 111 (194)
Q Consensus 106 ~~vG~G 111 (194)
..+|..
T Consensus 91 ~~Ag~~ 96 (253)
T PRK08993 91 NNAGLI 96 (253)
T ss_pred ECCCCC
Confidence 998864
No 160
>PRK05693 short chain dehydrogenase; Provisional
Probab=78.07 E-value=12 Score=29.48 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHc---CCCCCEEEEecCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDS---GGKFDALVAGIRT 110 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~---~~~~d~vv~~vG~ 110 (194)
.+|+..+|--|.++|....+.|.+++++.......... .+....++.-...++.... +.++. .+++|.+|..+|.
T Consensus 4 vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 4 VLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL-AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 48888899999999999999999877765432111111 1111112211223332222 22222 2479999999986
Q ss_pred c
Q 038938 111 G 111 (194)
Q Consensus 111 G 111 (194)
+
T Consensus 83 ~ 83 (274)
T PRK05693 83 G 83 (274)
T ss_pred C
Confidence 4
No 161
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.90 E-value=16 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.++|......|.+++++-..
T Consensus 9 vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 9 ILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred EEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 4899999999999999999999987776543
No 162
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=77.47 E-value=16 Score=28.23 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=44.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCC--eEecCCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPN--AYLLQQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..+|.-|.++|......|.+++++........... .+..+ .++.-...++.... +.++. +++|++|.
T Consensus 8 vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d~li~ 86 (248)
T TIGR01832 8 ALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF-GHIDILVN 86 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-CCCCEEEE
Confidence 488888899999999999999998777654321111111 11111 12222233333222 23333 37999999
Q ss_pred ecCCc
Q 038938 107 GIRTG 111 (194)
Q Consensus 107 ~vG~G 111 (194)
.+|..
T Consensus 87 ~ag~~ 91 (248)
T TIGR01832 87 NAGII 91 (248)
T ss_pred CCCCC
Confidence 98864
No 163
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.44 E-value=38 Score=27.66 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcC-CCCCEE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSG-GKFDAL 104 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~-~~~d~v 104 (194)
.+|.+ .+|.+ +|..|.+++..|+.+|.+.++++. .+.+|.. .+..+. .+++ +.+.....+.+..+ +.+|.|
T Consensus 162 ~~g~~--vlV~g-~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 162 VSGKS--VLITG-CGPIGLMAIAVAKAAGASLVIASD--PNPYRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCE--EEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEE
Confidence 45544 45654 689999999999999996445553 2334433 222222 1222 11111113344444 358999
Q ss_pred EEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 105 VAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 105 v~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+-++|++.....+...+ .+.-+++.+
T Consensus 236 ld~~g~~~~~~~~~~~l---~~~G~~v~~ 261 (341)
T cd05281 236 LEMSGNPKAIEQGLKAL---TPGGRVSIL 261 (341)
T ss_pred EECCCCHHHHHHHHHHh---ccCCEEEEE
Confidence 99998766555554444 455455544
No 164
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.22 E-value=18 Score=26.93 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=42.6
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchHHHHHcCCCCCEEE
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWKDSGGKFDALV 105 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~q~~~~~d~vv 105 (194)
.+-.|+. ++...-|+-|+++|...+.+|.+++|+-- -|....++-..|+-.. . + ++.-...|.||
T Consensus 19 ~~l~Gk~---vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~--DPi~alqA~~dGf~v~------~---~-~~a~~~adi~v 83 (162)
T PF00670_consen 19 LMLAGKR---VVVIGYGKVGKGIARALRGLGARVTVTEI--DPIRALQAAMDGFEVM------T---L-EEALRDADIFV 83 (162)
T ss_dssp S--TTSE---EEEE--SHHHHHHHHHHHHTT-EEEEE-S--SHHHHHHHHHTT-EEE----------H-HHHTTT-SEEE
T ss_pred eeeCCCE---EEEeCCCcccHHHHHHHhhCCCEEEEEEC--ChHHHHHhhhcCcEec------C---H-HHHHhhCCEEE
Confidence 3445656 99999999999999999999988877643 2322332333343211 1 2 23333679999
Q ss_pred EecCCchhHHH
Q 038938 106 AGIRTGGTITG 116 (194)
Q Consensus 106 ~~vG~GGt~~G 116 (194)
.++|.-..+.+
T Consensus 84 taTG~~~vi~~ 94 (162)
T PF00670_consen 84 TATGNKDVITG 94 (162)
T ss_dssp E-SSSSSSB-H
T ss_pred ECCCCccccCH
Confidence 99888765543
No 165
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.20 E-value=39 Score=27.71 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=51.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH----HHHHcCCCCCEEEEecCCc
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK----IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~----i~~q~~~~~d~vv~~vG~G 111 (194)
+..-.+|+.|.++|..-++.|.+++++.+.....+.++.+..+..+.....-+.+.. +.+.+.+..|.||+++=+-
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks~ 82 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQ 82 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCHH
Confidence 666778999999999999999999888764321222222211211111111111100 2222223568888888776
Q ss_pred hhHHHHHHHHHh--hCCCceEE
Q 038938 112 GTITGAEKFLKE--KNLEMKVY 131 (194)
Q Consensus 112 Gt~~Gi~~~l~~--~~~~~~vi 131 (194)
.+-. +...++. ..+++.|+
T Consensus 83 ~~~~-~l~~l~~~~l~~~~~vv 103 (326)
T PRK14620 83 QLRT-ICQQLQDCHLKKNTPIL 103 (326)
T ss_pred HHHH-HHHHHHHhcCCCCCEEE
Confidence 6654 3334443 24555565
No 166
>PRK05650 short chain dehydrogenase; Provisional
Probab=77.11 E-value=15 Score=28.99 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=44.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hh-cCCe-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SK-IPNA-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~-~~~~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|..-.+.|.+++++........... .+ .... ++.-...++.... +.++. +.+|++
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~-~~id~l 81 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKW-GGIDVI 81 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 588899999999999999999999777654321111111 11 1111 2222223322222 33334 379999
Q ss_pred EEecCCch
Q 038938 105 VAGIRTGG 112 (194)
Q Consensus 105 v~~vG~GG 112 (194)
|..+|...
T Consensus 82 I~~ag~~~ 89 (270)
T PRK05650 82 VNNAGVAS 89 (270)
T ss_pred EECCCCCC
Confidence 99988653
No 167
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=76.97 E-value=16 Score=28.41 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=26.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.++|..-+..|.+++++-..
T Consensus 5 ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 5 AVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999988776543
No 168
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.71 E-value=41 Score=27.69 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 21 AEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 21 a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
++....+.+|++ |+....|..|.+++..|+.+|.+++++
T Consensus 158 a~~~~~~~~g~~---VlV~G~G~vG~~a~~~a~~~G~~vi~~ 196 (349)
T TIGR03201 158 AAVQAGLKKGDL---VIVIGAGGVGGYMVQTAKAMGAAVVAI 196 (349)
T ss_pred HHHhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 334445667766 655555999999999999999975443
No 169
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.62 E-value=14 Score=28.36 Aligned_cols=76 Identities=9% Similarity=0.081 Sum_probs=43.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCeE--ecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNAY--LLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~~--~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|...+|..|.+++......|.+++++........... ....... +.-...++.... +.++++ .+|.|
T Consensus 10 vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~id~v 88 (239)
T PRK07666 10 ALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG-SIDIL 88 (239)
T ss_pred EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC-CccEE
Confidence 488889999999999988889998777654321111110 1111111 111223332222 333343 68999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 89 i~~ag~~ 95 (239)
T PRK07666 89 INNAGIS 95 (239)
T ss_pred EEcCccc
Confidence 9998864
No 170
>PRK10083 putative oxidoreductase; Provisional
Probab=76.34 E-value=40 Score=27.38 Aligned_cols=104 Identities=8% Similarity=0.098 Sum_probs=54.5
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASS-RGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSG 98 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~-~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~ 98 (194)
.+...+.+|.+ |+...+|--|.+++..|+. +|.+.++++.. .++|.. +.+-|. ..++ +.++.....+...+
T Consensus 153 ~~~~~~~~g~~---vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~g 226 (339)
T PRK10083 153 TGRTGPTEQDV---ALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVIN-NAQEPLGEALEEKG 226 (339)
T ss_pred HHhcCCCCCCE---EEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEec-CccccHHHHHhcCC
Confidence 34445667766 5445578889988888886 69987666543 233333 222232 1222 22222111112222
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
..+|.|+-++|++.++.-....+ .+.-+++-+-
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~~g 259 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLA---SPAARIVLMG 259 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHh---hcCCEEEEEc
Confidence 24678988888665544333333 4444555543
No 171
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=76.28 E-value=15 Score=28.80 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC--eEecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN--AYLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|......|.+++++-......++...+.+. .++.-...++.... +.++. +++|.+|..
T Consensus 9 vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id~li~~ 87 (263)
T PRK06200 9 ALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAF-GKLDCFVGN 87 (263)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhc-CCCCEEEEC
Confidence 48888899999999999999999876664432111111111111 12221223332222 33334 379999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 88 ag~~ 91 (263)
T PRK06200 88 AGIW 91 (263)
T ss_pred CCCc
Confidence 8853
No 172
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.26 E-value=17 Score=28.25 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=44.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCC-eE-ecCCCCCCCchH-HH----HHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPN-AY-LLQQHENPANPK-IW----KDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~-~~-~~~~~~~~~~~~-i~----~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|......|.+++++........... .+... .. +.-...++.... ++ ++. +.+|.|
T Consensus 10 vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~~d~v 88 (262)
T PRK13394 10 AVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF-GSVDIL 88 (262)
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 589999999999999999999998776654331111111 11111 11 121233333222 22 223 369999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 89 i~~ag~~ 95 (262)
T PRK13394 89 VSNAGIQ 95 (262)
T ss_pred EECCccC
Confidence 9998864
No 173
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=76.12 E-value=15 Score=28.45 Aligned_cols=76 Identities=21% Similarity=0.142 Sum_probs=43.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh-cCCeE-ecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK-IPNAY-LLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~-~~~~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|...+|..|.++|-.....|.+++++............. ..... +.-...++.... +.++. +.+|.+|..
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-~~id~vi~~ 81 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEW-RNIDVLVNN 81 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHc-CCCCEEEEC
Confidence 48888999999999999999999877665421111111111 11111 211233332222 22333 369999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 82 ag~~ 85 (248)
T PRK10538 82 AGLA 85 (248)
T ss_pred CCcc
Confidence 8864
No 174
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.12 E-value=49 Score=28.31 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCch
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGG 112 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GG 112 (194)
++....|+.|..+|..-...|.+++++-.. +++.. .+..+..+... +......+++.+ .+.|.||++++.=.
T Consensus 3 viIiG~G~ig~~~a~~L~~~g~~v~vid~~---~~~~~~~~~~~~~~~~~g--d~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 3 IIIVGAGQVGYTLAENLSGENNDVTVIDTD---EERLRRLQDRLDVRTVVG--NGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEECC---HHHHHHHHhhcCEEEEEe--CCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 555577999999999999999998877542 22222 22233223221 222333455553 46899999987644
Q ss_pred hHHHHHHHHHhhCCCceEEEE
Q 038938 113 TITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 113 t~~Gi~~~l~~~~~~~~vigv 133 (194)
.-.=++...|..+|..++|..
T Consensus 78 ~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred HHHHHHHHHHHhcCCCeEEEE
Confidence 443455556677788777775
No 175
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=76.09 E-value=17 Score=28.40 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=42.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eE-ecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AY-LLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|....+.|.+++++-......++......+ .. +.-...++.... +.+++ +++|++|..
T Consensus 8 vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id~li~~ 86 (262)
T TIGR03325 8 VLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAF-GKIDCLIPN 86 (262)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHh-CCCCEEEEC
Confidence 48888899999999999999999977664322111111111111 11 111122222221 33344 379999999
Q ss_pred cCC
Q 038938 108 IRT 110 (194)
Q Consensus 108 vG~ 110 (194)
+|.
T Consensus 87 Ag~ 89 (262)
T TIGR03325 87 AGI 89 (262)
T ss_pred CCC
Confidence 885
No 176
>PRK07478 short chain dehydrogenase; Provisional
Probab=75.90 E-value=16 Score=28.46 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-Ce-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-NA-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|..-.+.|.+++++.......+... .+.. .. ++.-...++.... +.++.+ ++|++
T Consensus 9 ~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~id~l 87 (254)
T PRK07478 9 AIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFG-GLDIA 87 (254)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC-CCCEE
Confidence 488888899999999999999998766654321111111 1111 11 2222233332222 344443 79999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 i~~ag~~ 94 (254)
T PRK07478 88 FNNAGTL 94 (254)
T ss_pred EECCCCC
Confidence 9998863
No 177
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=75.85 E-value=39 Score=27.05 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=57.7
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchH-HHHHcCC-
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPK-IWKDSGG- 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-i~~q~~~- 99 (194)
+...+.+|.+ .+|...+|..|.+++..|+.+|.+.+++.......+.. .+ .+. .+++. .++.... +.+..++
T Consensus 133 ~~~~~~~g~~--vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~-~g~~~~~~~-~~~~~~~~i~~~~~~~ 207 (324)
T cd08292 133 DFLGVKPGQW--LIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL-RA-LGIGPVVST-EQPGWQDKVREAAGGA 207 (324)
T ss_pred HhhCCCCCCE--EEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH-Hh-cCCCEEEcC-CCchHHHHHHHHhCCC
Confidence 3345667755 35556679999999999999999876665533221111 22 221 22222 2222222 4455543
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.|+-++|+- .+ ...++...+.-+++-+
T Consensus 208 ~~d~v~d~~g~~-~~---~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 208 PISVALDSVGGK-LA---GELLSLLGEGGTLVSF 237 (324)
T ss_pred CCcEEEECCCCh-hH---HHHHHhhcCCcEEEEE
Confidence 589999888753 22 3445545555566655
No 178
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.83 E-value=19 Score=27.74 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=44.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-eEe-cCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-AYL-LQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~~~-~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|..+|..-.+.|.+++++........... .+..+ ..+ .-...++.... +.++. +++|.
T Consensus 7 vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~ 85 (250)
T PRK08063 7 ALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF-GRLDV 85 (250)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCE
Confidence 589999999999999999999998776543322211110 11111 122 12223333222 33334 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||..+|.+
T Consensus 86 vi~~ag~~ 93 (250)
T PRK08063 86 FVNNAASG 93 (250)
T ss_pred EEECCCCC
Confidence 99998865
No 179
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=75.70 E-value=18 Score=29.20 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=53.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC---CeEecCCCCCCCchH-HHHHc---CCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP---NAYLLQQHENPANPK-IWKDS---GGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~---~~~~~~~~~~~~~~~-i~~q~---~~~~d~v 104 (194)
.||+..|+.-|.++|-.-++.|.+++++-......+... .+.. -.+++-.+.++.... +...+ ...+|.+
T Consensus 9 ~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvL 88 (265)
T COG0300 9 ALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVL 88 (265)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEE
Confidence 589999999999999999999999999987653333222 1111 123444455565444 33332 2469999
Q ss_pred EEecCCchh
Q 038938 105 VAGIRTGGT 113 (194)
Q Consensus 105 v~~vG~GGt 113 (194)
|-.+|.|..
T Consensus 89 VNNAG~g~~ 97 (265)
T COG0300 89 VNNAGFGTF 97 (265)
T ss_pred EECCCcCCc
Confidence 999998865
No 180
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.48 E-value=48 Score=30.19 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=27.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
+|+.-.+|-.|++.|+..+++|++++||-..
T Consensus 312 kVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~ 342 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRH 342 (639)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3999999999999999999999999888543
No 181
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.44 E-value=24 Score=26.87 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=44.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHH-Hh---hhc-CCeEec-CCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR-RM---SKI-PNAYLL-QQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k-~~---~~~-~~~~~~-~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|..|.+++....+.|.+++++.....+..+ .. .+. ....+. -...++.... +.++.+ .+|+
T Consensus 8 vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~-~id~ 86 (248)
T PRK05557 8 ALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG-GVDI 86 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC-CCCE
Confidence 4899999999999999988899987666644322111 10 111 122222 1233333222 233333 6899
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||+.+|..
T Consensus 87 vi~~ag~~ 94 (248)
T PRK05557 87 LVNNAGIT 94 (248)
T ss_pred EEECCCcC
Confidence 99998864
No 182
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=75.30 E-value=47 Score=27.72 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=48.4
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCC--chH-HHHHc
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPA--NPK-IWKDS 97 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~--~~~-i~~q~ 97 (194)
+...+.+|.+ |+....|.-|.+++..|+.+|.+-++++.. ..++.+ +..-|. ..++ ..++. ... +.+..
T Consensus 184 ~~~~~~~g~~---VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~~~i~-~~~~~~~~~~~v~~~~ 257 (373)
T cd08299 184 NTAKVTPGST---CAVFGLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGATECIN-PQDYKKPIQEVLTEMT 257 (373)
T ss_pred hccCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEec-ccccchhHHHHHHHHh
Confidence 3445667766 554478999999999999999943344432 223332 222232 1222 11111 122 33333
Q ss_pred CCCCCEEEEecCCchhHHH
Q 038938 98 GGKFDALVAGIRTGGTITG 116 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~G 116 (194)
+..+|.|+-++|+..++.-
T Consensus 258 ~~~~d~vld~~g~~~~~~~ 276 (373)
T cd08299 258 DGGVDFSFEVIGRLDTMKA 276 (373)
T ss_pred CCCCeEEEECCCCcHHHHH
Confidence 4468999999886444433
No 183
>PRK13243 glyoxylate reductase; Reviewed
Probab=75.19 E-value=29 Score=28.88 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=50.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-----------hhcCCeEecCCCCCCC-----chHHHHHcCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-----------SKIPNAYLLQQHENPA-----NPKIWKDSGG 99 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-----------~~~~~~~~~~~~~~~~-----~~~i~~q~~~ 99 (194)
|..-.-|+.|..+|-.++.+|+++.++-+...+..... ..+.+...++--.++. +...++.+
T Consensus 153 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~m-- 230 (333)
T PRK13243 153 IGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLM-- 230 (333)
T ss_pred EEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcC--
Confidence 88888999999999999999999887765422111000 1112222222111111 11134444
Q ss_pred CCCEEEEecCCchhHH--HHHHHHH
Q 038938 100 KFDALVAGIRTGGTIT--GAEKFLK 122 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~--Gi~~~l~ 122 (194)
+++.+++=++.|+.+- .+..+|+
T Consensus 231 k~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 231 KPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCCeEEEECcCchhcCHHHHHHHHH
Confidence 5899999999999864 4444554
No 184
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.10 E-value=17 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=26.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|......|.+++++-.
T Consensus 8 vlItGa~~~IG~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 8 VVVSGVGPGLGRTLAVRAARAGADVVLAAR 37 (258)
T ss_pred EEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 589999999999999999999998776654
No 185
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=75.03 E-value=20 Score=28.00 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=45.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.++|....+.|.+++++.....+..+.. ..... . ++.-...++.... +.++. +++|.
T Consensus 10 ~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-g~id~ 88 (261)
T PRK08936 10 VVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF-GTLDV 88 (261)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc-CCCCE
Confidence 488899999999999999999998877655432221111 11111 1 1211233332222 34444 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 89 lv~~ag~~ 96 (261)
T PRK08936 89 MINNAGIE 96 (261)
T ss_pred EEECCCCC
Confidence 99998864
No 186
>PRK07326 short chain dehydrogenase; Provisional
Probab=75.02 E-value=16 Score=27.87 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCeE-ecCCCCCCCchH-----HHHHcCCCCCEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNAY-LLQQHENPANPK-----IWKDSGGKFDALV 105 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv 105 (194)
.+|...+|.-|.++|......|.+++++........+.. .+..... +.-...++.... +.++++ .+|.||
T Consensus 9 ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~d~vi 87 (237)
T PRK07326 9 ALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFG-GLDVLI 87 (237)
T ss_pred EEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcC-CCCEEE
Confidence 488889999999999999889999777654221111111 1111211 211223332221 333343 799999
Q ss_pred EecCCch
Q 038938 106 AGIRTGG 112 (194)
Q Consensus 106 ~~vG~GG 112 (194)
.+.|.+.
T Consensus 88 ~~ag~~~ 94 (237)
T PRK07326 88 ANAGVGH 94 (237)
T ss_pred ECCCCCC
Confidence 9988763
No 187
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.91 E-value=16 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|......|.+++++-.
T Consensus 13 vlItGa~g~iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 13 ALVTGSSQGIGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred EEEECCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 488899999999999999999998665543
No 188
>PRK06179 short chain dehydrogenase; Provisional
Probab=74.66 E-value=21 Score=27.99 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=44.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|....+.|.+++++.... .+......-.++.-...++.... +.++. +.+|.+|..+|
T Consensus 7 vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~---~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~-g~~d~li~~ag 82 (270)
T PRK06179 7 ALVTGASSGIGRATAEKLARAGYRVFGTSRNP---ARAAPIPGVELLELDVTDDASVQAAVDEVIARA-GRIDVLVNNAG 82 (270)
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh---hhccccCCCeeEEeecCCHHHHHHHHHHHHHhC-CCCCEEEECCC
Confidence 48889999999999999999999977665432 11111111112222233333222 33334 37999999998
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 83 ~~ 84 (270)
T PRK06179 83 VG 84 (270)
T ss_pred CC
Confidence 75
No 189
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.66 E-value=19 Score=27.74 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=25.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|....+.|.+++++..
T Consensus 9 vlItGasg~iG~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 9 ALITGGTSGIGLETARQFLAEGARVAITGR 38 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 489999999999999999999998766543
No 190
>PRK07832 short chain dehydrogenase; Provisional
Probab=74.38 E-value=17 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=25.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|...++.|.+++++-.
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 488889999999999999999998766544
No 191
>PRK09291 short chain dehydrogenase; Provisional
Probab=74.36 E-value=17 Score=28.11 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhc-CCeEe-cCCCCCCCchHHHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKI-PNAYL-LQQHENPANPKIWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~-~~~~~-~~~~~~~~~~~i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.+++......|.+++++........+.. .+. ....+ .-...++.. +...+..++|.||..+|
T Consensus 5 vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 5 ILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAID--RAQAAEWDVDVLLNNAG 82 (257)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHH--HHHHhcCCCCEEEECCC
Confidence 489999999999999999999999887765421111111 111 11111 111222211 22333347999999988
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 83 ~~ 84 (257)
T PRK09291 83 IG 84 (257)
T ss_pred cC
Confidence 54
No 192
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.22 E-value=20 Score=27.99 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCe--EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNA--YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~--~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.+++......|.+++++.......++.. ...... ++.-...++.... +.+++ +++|.|
T Consensus 4 vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~id~v 82 (263)
T PRK06181 4 VIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARF-GGIDIL 82 (263)
T ss_pred EEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 488889999999999988899998777654321111111 111111 1222233333222 22333 369999
Q ss_pred EEecCCch
Q 038938 105 VAGIRTGG 112 (194)
Q Consensus 105 v~~vG~GG 112 (194)
|.++|...
T Consensus 83 i~~ag~~~ 90 (263)
T PRK06181 83 VNNAGITM 90 (263)
T ss_pred EECCCccc
Confidence 99987643
No 193
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.20 E-value=25 Score=27.56 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC--eEecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN--AYLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|--|.++|....+.|.+++++-......++...+... .++.-...++.... +.+++ +++|.+|..
T Consensus 9 vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id~lv~~ 87 (261)
T PRK08265 9 AIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARF-GRVDILVNL 87 (261)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHh-CCCCEEEEC
Confidence 48888889999999999999999877664432111111111111 12221223332222 33334 379999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 88 ag~~ 91 (261)
T PRK08265 88 ACTY 91 (261)
T ss_pred CCCC
Confidence 8853
No 194
>PRK06180 short chain dehydrogenase; Provisional
Probab=74.16 E-value=22 Score=28.18 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=44.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eE-ecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AY-LLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.+++....+.|.+++++...............+ .. +.-...++.... +.++. +.+|+||..
T Consensus 7 vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~-~~~d~vv~~ 85 (277)
T PRK06180 7 WLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATF-GPIDVLVNN 85 (277)
T ss_pred EEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHh-CCCCEEEEC
Confidence 48999999999999999999999977776532111111111111 11 111222222221 23333 369999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 86 ag~~ 89 (277)
T PRK06180 86 AGYG 89 (277)
T ss_pred CCcc
Confidence 9875
No 195
>PRK05717 oxidoreductase; Validated
Probab=73.98 E-value=22 Score=27.64 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC-CeEe-cCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP-NAYL-LQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~-~~~~-~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|..-...|.+++++-...........+.. ...+ .-...++.... +.++. +++|.+|..
T Consensus 13 vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id~li~~ 91 (255)
T PRK05717 13 ALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF-GRLDALVCN 91 (255)
T ss_pred EEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHh-CCCCEEEEC
Confidence 5899999999999999999999987776432211111111111 1111 11222332221 33444 379999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 92 ag~~ 95 (255)
T PRK05717 92 AAIA 95 (255)
T ss_pred CCcc
Confidence 8864
No 196
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=73.96 E-value=12 Score=31.06 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=27.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
+|.--.||-.|.-+|..|+++|+.++.|-.
T Consensus 14 kvmLLGSGELGKEvaIe~QRLG~eViAVDr 43 (394)
T COG0027 14 KVMLLGSGELGKEVAIEAQRLGVEVIAVDR 43 (394)
T ss_pred EEEEecCCccchHHHHHHHhcCCEEEEecC
Confidence 388899999999999999999999998854
No 197
>PRK07074 short chain dehydrogenase; Provisional
Probab=73.94 E-value=20 Score=27.84 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=44.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh--cCC-eEecCCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK--IPN-AYLLQQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..+|.-|.++|......|.+++++.......+....+ ... .++.-...++.... +.++.+ ++|.||.
T Consensus 5 ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~d~vi~ 83 (257)
T PRK07074 5 ALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERG-PVDVLVA 83 (257)
T ss_pred EEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence 48888889999999999888999877765432111111111 111 12222233332221 334443 6999999
Q ss_pred ecCCc
Q 038938 107 GIRTG 111 (194)
Q Consensus 107 ~vG~G 111 (194)
..|..
T Consensus 84 ~ag~~ 88 (257)
T PRK07074 84 NAGAA 88 (257)
T ss_pred CCCCC
Confidence 99865
No 198
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=73.84 E-value=20 Score=27.94 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=44.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC-CeE-ecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP-NAY-LLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~-~~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+.++|--|.++|..-.+.|.+++++........+...+.. ... +.-...++.... +.+++ +++|.+|..
T Consensus 9 vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~li~~ 87 (257)
T PRK07067 9 ALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERF-GGIDILFNN 87 (257)
T ss_pred EEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEEC
Confidence 4899999999999999999999987776543221112111111 111 111122222222 23333 379999998
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 88 ag~~ 91 (257)
T PRK07067 88 AALF 91 (257)
T ss_pred CCcC
Confidence 8764
No 199
>PRK06172 short chain dehydrogenase; Provisional
Probab=73.58 E-value=19 Score=27.87 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCC--eEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPN--AYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|....+.|.+++++........+.. .+..+ .++.-...++.... +.+++ +++|.|
T Consensus 10 ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g~id~l 88 (253)
T PRK06172 10 ALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY-GRLDYA 88 (253)
T ss_pred EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-CCCCEE
Confidence 489999999999999999999998777654322111111 11111 12222223322222 33334 379999
Q ss_pred EEecCC
Q 038938 105 VAGIRT 110 (194)
Q Consensus 105 v~~vG~ 110 (194)
|..+|.
T Consensus 89 i~~ag~ 94 (253)
T PRK06172 89 FNNAGI 94 (253)
T ss_pred EECCCC
Confidence 999886
No 200
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=73.56 E-value=22 Score=34.08 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=27.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
+|+.-.+|-.|++.|+..++.|++++||=
T Consensus 308 kVaVIGsGPAGLsaA~~Lar~G~~VtVfE 336 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTVFE 336 (944)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 39999999999999999999999999984
No 201
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=73.52 E-value=49 Score=27.76 Aligned_cols=88 Identities=20% Similarity=0.130 Sum_probs=54.3
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcCCCCCEE
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSGGKFDAL 104 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~~~~d~v 104 (194)
..++|+. .+|...||--|.+.-..|+.+|. ++++.-.+....+. .++-|.-..-+|+++...+ +.......+|+|
T Consensus 154 ~~~~g~~--vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l-~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvV 229 (347)
T KOG1198|consen 154 KLSKGKS--VLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLEL-VKKLGADEVVDYKDENVVELIKKYTGKGVDVV 229 (347)
T ss_pred ccCCCCe--EEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHH-HHHcCCcEeecCCCHHHHHHHHhhcCCCccEE
Confidence 3455544 68999999999999999999993 33332222222222 3444555556677755443 223234469999
Q ss_pred EEecCCchhHHHH
Q 038938 105 VAGIRTGGTITGA 117 (194)
Q Consensus 105 v~~vG~GGt~~Gi 117 (194)
+-++|+-.+.-.+
T Consensus 230 lD~vg~~~~~~~~ 242 (347)
T KOG1198|consen 230 LDCVGGSTLTKSL 242 (347)
T ss_pred EECCCCCccccch
Confidence 9999887555444
No 202
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=73.29 E-value=6.7 Score=29.81 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=24.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
+-=.|||-+|.++|-++...|..++++....
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4556999999999999999999999998764
No 203
>PRK14030 glutamate dehydrogenase; Provisional
Probab=73.23 E-value=24 Score=30.68 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHcC-CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEE--------EeCCCCCHHH
Q 038938 10 PSRIACSMIKDAEDKG-SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIV--------KMPNTYSIQR 71 (194)
Q Consensus 10 K~R~a~~~~~~a~~~g-~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~i--------v~p~~~~~~k 71 (194)
--||.++.+..+++.. .--+|.+ |+....||-|..+|.....+|.+++. +-|+..+.++
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~---vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKT---VAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 4577888887776543 3234656 99999999999999999999999999 5777777665
No 204
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.18 E-value=18 Score=27.78 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|...+|.-|.+++..-...|.+++++...
T Consensus 8 vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 8 AIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4899999999999999999999997666544
No 205
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=73.05 E-value=24 Score=27.59 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecC-CCCCCCchHHHHHcCCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQ-QHENPANPKIWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~q~~~~~d~vv~~vG~G 111 (194)
.+|...+|.-|..++......|.+++++............+..+..+.. ...++. ..+.+++...+|.||+..|..
T Consensus 20 ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 20 VFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGS-DKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred EEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCH-HHHHHHhhcCCCEEEECCCCC
Confidence 5899999999999999988889998777643211111101111222221 122211 113455533689999887753
No 206
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=73.01 E-value=26 Score=30.57 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHcC-CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE--------eCCCCCHHHH
Q 038938 10 PSRIACSMIKDAEDKG-SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK--------MPNTYSIQRR 72 (194)
Q Consensus 10 K~R~a~~~~~~a~~~g-~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv--------~p~~~~~~k~ 72 (194)
--||..+.+..+++.. .--+|.+ |+...+||-|..+|.....+|.+++.+ -|+..+.++.
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~---VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l 284 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKT---VVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKL 284 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHH
Confidence 4577778887776543 2235666 999999999999999999999998844 4555555544
No 207
>PRK08267 short chain dehydrogenase; Provisional
Probab=72.70 E-value=24 Score=27.47 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC--CeEec-CCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP--NAYLL-QQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~--~~~~~-~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..+|.-|.++|....+.|.+++++............... ...+. -...+..... +.++..+++|+||.
T Consensus 4 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~ 83 (260)
T PRK08267 4 IFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFN 83 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEE
Confidence 4888889999999999999999988777543221111111111 11111 1122222221 22232457999999
Q ss_pred ecCCch
Q 038938 107 GIRTGG 112 (194)
Q Consensus 107 ~vG~GG 112 (194)
.+|...
T Consensus 84 ~ag~~~ 89 (260)
T PRK08267 84 NAGILR 89 (260)
T ss_pred CCCCCC
Confidence 998753
No 208
>PRK08226 short chain dehydrogenase; Provisional
Probab=72.60 E-value=21 Score=27.84 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=43.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-C-eEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-N-AYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~-~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|...+|.-|.++|......|.+++++-... ...... .+.. . .++.-...++.... +.+++ +++|.|
T Consensus 9 ~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-~~id~v 86 (263)
T PRK08226 9 ALITGALQGIGEGIARVFARHGANLILLDISP-EIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE-GRIDIL 86 (263)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-HHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 48889999999999999999999976664432 111110 1111 1 12222233332222 33344 379999
Q ss_pred EEecCC
Q 038938 105 VAGIRT 110 (194)
Q Consensus 105 v~~vG~ 110 (194)
|..+|.
T Consensus 87 i~~ag~ 92 (263)
T PRK08226 87 VNNAGV 92 (263)
T ss_pred EECCCc
Confidence 999885
No 209
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=72.58 E-value=18 Score=27.73 Aligned_cols=77 Identities=21% Similarity=0.098 Sum_probs=44.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-CeEe-cCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-NAYL-LQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~~~~-~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.+++..-.+.|.+++++........... .+.. ...+ .-...++.... +..+++ ++|.|
T Consensus 9 ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~-~~d~v 87 (251)
T PRK12826 9 ALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG-RLDIL 87 (251)
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC-CCCEE
Confidence 588999999999999999999998777655421111111 1111 1111 11233332222 233333 79999
Q ss_pred EEecCCch
Q 038938 105 VAGIRTGG 112 (194)
Q Consensus 105 v~~vG~GG 112 (194)
|..+|...
T Consensus 88 i~~ag~~~ 95 (251)
T PRK12826 88 VANAGIFP 95 (251)
T ss_pred EECCCCCC
Confidence 99987755
No 210
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=72.58 E-value=13 Score=31.47 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRR 72 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~ 72 (194)
|-.-.+|..|+.+|.+|+++|++++++-|....+...
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~ 40 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQ 40 (375)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhh
Confidence 5566789999999999999999999999876655443
No 211
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=72.38 E-value=32 Score=24.58 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=46.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh------h-hcCCeEecC-CCCCCCchH-HHHHc---CCCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM------S-KIPNAYLLQ-QHENPANPK-IWKDS---GGKFD 102 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~------~-~~~~~~~~~-~~~~~~~~~-i~~q~---~~~~d 102 (194)
.+|...++.-|.++|..-.+.|-+.++++..+.+.++.. . .....++.. ...++.... ++++. .+++|
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld 82 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLD 82 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSES
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 588999999999999999999777666666552222221 1 111222221 122222222 22222 24799
Q ss_pred EEEEecCCch
Q 038938 103 ALVAGIRTGG 112 (194)
Q Consensus 103 ~vv~~vG~GG 112 (194)
++|..+|...
T Consensus 83 ~li~~ag~~~ 92 (167)
T PF00106_consen 83 ILINNAGIFS 92 (167)
T ss_dssp EEEEECSCTT
T ss_pred cccccccccc
Confidence 9999998866
No 212
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.29 E-value=28 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=25.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|......|.+++++-
T Consensus 13 ~lItGa~~~iG~~ia~~l~~~G~~vv~~~ 41 (265)
T PRK07097 13 ALITGASYGIGFAIAKAYAKAGATIVFND 41 (265)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999999876663
No 213
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=72.23 E-value=56 Score=27.20 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=56.4
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH-HHHHcCCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK-IWKDSGGK 100 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~-i~~q~~~~ 100 (194)
+...+.+|.+ |+....|..|.+++..|+.+|.+.++++.. +.+|.. ..+-+...++ +.++.... +.+..+..
T Consensus 170 ~~~~~~~g~~---vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~--~~~~~~~~~~~g~~~v~-~~~~~~~~~i~~~~~~~ 243 (375)
T cd08282 170 ELAGVQPGDT---VAVFGAGPVGLMAAYSAILRGASRVYVVDH--VPERLDLAESIGAIPID-FSDGDPVEQILGLEPGG 243 (375)
T ss_pred HhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCeEec-cCcccHHHHHHHhhCCC
Confidence 3344566766 444677999999999999999854444432 334433 2333332222 22222222 44444445
Q ss_pred CCEEEEecCCchh--------HHHHHHHHHhhCCCceE
Q 038938 101 FDALVAGIRTGGT--------ITGAEKFLKEKNLEMKV 130 (194)
Q Consensus 101 ~d~vv~~vG~GGt--------~~Gi~~~l~~~~~~~~v 130 (194)
+|.++-++|+..+ ...+...++...+.-++
T Consensus 244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 281 (375)
T cd08282 244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGI 281 (375)
T ss_pred CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEE
Confidence 8999999886531 12344555544454444
No 214
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.22 E-value=35 Score=24.88 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=59.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecC-CCCCCCchHHHHHcCCCCCEEEEecCCchh-
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQ-QHENPANPKIWKDSGGKFDALVAGIRTGGT- 113 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~q~~~~~d~vv~~vG~GGt- 113 (194)
+|...+|+.|..++-...+.|.++++++....+... .++..++. .+.++ ..+.+.+. ..|+||.++|....
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----~~~~~~~~~d~~d~--~~~~~al~-~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----SPGVEIIQGDLFDP--DSVKAALK-GADAVIHAAGPPPKD 74 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----CTTEEEEESCTTCH--HHHHHHHT-TSSEEEECCHSTTTH
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----ccccccceeeehhh--hhhhhhhh-hcchhhhhhhhhccc
Confidence 677889999999999999999999999987543322 33333332 12222 11444454 68999999986444
Q ss_pred ---HHHHHHHHHhhCCCceEEEEecCC
Q 038938 114 ---ITGAEKFLKEKNLEMKVYGIESVE 137 (194)
Q Consensus 114 ---~~Gi~~~l~~~~~~~~vigve~~~ 137 (194)
.--+..+++.. +-.+++-+...+
T Consensus 75 ~~~~~~~~~a~~~~-~~~~~v~~s~~~ 100 (183)
T PF13460_consen 75 VDAAKNIIEAAKKA-GVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHT-TSSEEEEEEETT
T ss_pred cccccccccccccc-ccccceeeeccc
Confidence 33334444443 334777766554
No 215
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=72.06 E-value=27 Score=26.90 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=24.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|...+|.-|.++|..-.+.|.++++..
T Consensus 5 ilItGas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 5 VLITGASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 48888999999999999999999876654
No 216
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.05 E-value=52 Score=26.72 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=52.2
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC-C
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG-G 99 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~-~ 99 (194)
...+.++.+ .+| ..+|-.|.++...|+.+|...++++.. +..+.. .++.+. .+++ +.+..... +....+ .
T Consensus 162 ~~~~~~~~~--VlI-~g~g~vg~~~iqlak~~g~~~v~~~~~--~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 162 LAGIKPGST--VAV-IGAGPVGLCAVAGARLLGAARIIAVDS--NPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGR 235 (347)
T ss_pred hcCCCCCCE--EEE-ECCCHHHHHHHHHHHHcCCCEEEEEeC--CHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCC
Confidence 344556655 345 456888999999999999744444422 233332 222222 2222 22222222 433444 3
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.++-++|++..+.- .++.+.++-+++-+
T Consensus 236 ~~d~vld~~g~~~~~~~---~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGFEETFEQ---AVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCCHHHHHH---HHHHhhcCCEEEEE
Confidence 58999988876433333 33333444455443
No 217
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.04 E-value=52 Score=27.33 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=27.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
|..-.+|..|.++|..++..|++++++-+..
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 7777899999999999999999999997753
No 218
>PRK07825 short chain dehydrogenase; Provisional
Probab=71.87 E-value=21 Score=28.07 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC-CeEecCCCCCCCchH-----HHHHcCCCCCEEEEec
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP-NAYLLQQHENPANPK-----IWKDSGGKFDALVAGI 108 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~v 108 (194)
.+|+..||.-|.++|......|.+++++..+.....+...+.. -.++.-...++.... +.+.. +++|.+|..+
T Consensus 8 ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~li~~a 86 (273)
T PRK07825 8 VAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADL-GPIDVLVNNA 86 (273)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEECC
Confidence 4899999999999999888999987666542211111111111 112222233333222 22333 4799999998
Q ss_pred CCc
Q 038938 109 RTG 111 (194)
Q Consensus 109 G~G 111 (194)
|.+
T Consensus 87 g~~ 89 (273)
T PRK07825 87 GVM 89 (273)
T ss_pred CcC
Confidence 864
No 219
>PRK12742 oxidoreductase; Provisional
Probab=71.86 E-value=29 Score=26.47 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eEecCCCCCCCchH-HHHHcCCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AYLLQQHENPANPK-IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~G 111 (194)
.+|+..+|.-|.++|......|.++++.........+...++.+ .++.-...++.... .+++. +++|++|..+|..
T Consensus 9 vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~li~~ag~~ 86 (237)
T PRK12742 9 VLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKS-GALDILVVNAGIA 86 (237)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHh-CCCcEEEECCCCC
Confidence 48888899999999999899999876654332111111112112 11211122221111 33443 3699999998864
No 220
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=71.75 E-value=23 Score=27.22 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecC-CCCCCCchHHHHHcCCCCCEEEEecC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQ-QHENPANPKIWKDSGGKFDALVAGIR 109 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~q~~~~~d~vv~~vG 109 (194)
+|...+|+-|..++.+....+.++++++.+..+......+..|...+. .++++ ..|.+.+. ..|.||+.++
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~--~~l~~al~-g~d~v~~~~~ 73 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDP--ESLVAALK-GVDAVFSVTP 73 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-H--HHHHHHHT-TCSEEEEESS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCH--HHHHHHHc-CCceEEeecC
Confidence 678889999999999999999999999987622211112233433332 23222 12556665 6899999888
No 221
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=71.53 E-value=23 Score=27.49 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-.+.|.+++++-
T Consensus 12 ~lItGas~giG~~ia~~L~~~G~~vvl~~ 40 (254)
T PRK08085 12 ILITGSAQGIGFLLATGLAEYGAEIIIND 40 (254)
T ss_pred EEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 48999999999999999999998776654
No 222
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.52 E-value=66 Score=27.75 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcCCCCCE
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSGGKFDA 103 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~~~~d~ 103 (194)
+...+|++ |+....|.-|+.+|..++.+|.+++++-+ .+.|.. +...|....+ . .+.+ ...|.
T Consensus 197 ~~~l~Gkt---VvViG~G~IG~~va~~ak~~Ga~ViV~d~---d~~R~~~A~~~G~~~~~-------~--~e~v-~~aDV 260 (413)
T cd00401 197 DVMIAGKV---AVVAGYGDVGKGCAQSLRGQGARVIVTEV---DPICALQAAMEGYEVMT-------M--EEAV-KEGDI 260 (413)
T ss_pred CCCCCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEEC---ChhhHHHHHhcCCEEcc-------H--HHHH-cCCCE
Confidence 34456777 99999999999999999999998655432 223322 3334432211 1 1222 24799
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
||.++|+-.++..- .+....+...++-+
T Consensus 261 VI~atG~~~~i~~~--~l~~mk~Ggilvnv 288 (413)
T cd00401 261 FVTTTGNKDIITGE--HFEQMKDGAIVCNI 288 (413)
T ss_pred EEECCCCHHHHHHH--HHhcCCCCcEEEEe
Confidence 99998876655321 13334455555443
No 223
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.48 E-value=42 Score=29.50 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=27.7
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
-.|++ ++...-|+-|+++|..++.+|++++++
T Consensus 252 LaGKt---VgVIG~G~IGr~vA~rL~a~Ga~ViV~ 283 (476)
T PTZ00075 252 IAGKT---VVVCGYGDVGKGCAQALRGFGARVVVT 283 (476)
T ss_pred cCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 45666 999999999999999999999986665
No 224
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.35 E-value=30 Score=26.60 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=43.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHH--h--hhcC-C-eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRR--M--SKIP-N-AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~--~--~~~~-~-~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|--|.+++..-...|.++++........... . .+.. . .++.-...++.... +.+++ +.+|+
T Consensus 9 vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d~ 87 (252)
T PRK06077 9 VVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRY-GVADI 87 (252)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHc-CCCCE
Confidence 48888899999999998888999876655332111111 0 1111 1 12222233333222 33334 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||..+|.+
T Consensus 88 vi~~ag~~ 95 (252)
T PRK06077 88 LVNNAGLG 95 (252)
T ss_pred EEECCCCC
Confidence 99999863
No 225
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.21 E-value=25 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|...+|.-|.++|-...+.|.+++++.
T Consensus 10 vlItGa~g~iG~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 10 ALVTGAARGLGAAFAEALAEAGATVAFND 38 (250)
T ss_pred EEEeCCCChHHHHHHHHHHHcCCEEEEEe
Confidence 48888899999999999999999876663
No 226
>PRK06841 short chain dehydrogenase; Provisional
Probab=71.15 E-value=27 Score=26.98 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=43.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC--C-eEecCCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP--N-AYLLQQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~--~-~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..+|--|.++|....+.|.+++++-.... ..+...+.. . .++.-...++.... +.+++ +++|.||.
T Consensus 18 vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~~d~vi~ 95 (255)
T PRK06841 18 AVVTGGASGIGHAIAELFAAKGARVALLDRSED-VAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAF-GRIDILVN 95 (255)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 488888999999999999999998766654322 111111111 1 12221222222222 33344 36899999
Q ss_pred ecCCc
Q 038938 107 GIRTG 111 (194)
Q Consensus 107 ~vG~G 111 (194)
.+|..
T Consensus 96 ~ag~~ 100 (255)
T PRK06841 96 SAGVA 100 (255)
T ss_pred CCCCC
Confidence 99875
No 227
>PRK12937 short chain dehydrogenase; Provisional
Probab=70.71 E-value=28 Score=26.65 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=44.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-eE-ecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-AY-LLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~~-~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.++|..-.+.|.+++++.....+..+.. .+... .. +.-...++.... +.++. +++|+
T Consensus 8 vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~id~ 86 (245)
T PRK12937 8 AIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF-GRIDV 86 (245)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc-CCCCE
Confidence 488888999999999999999998877654332211110 11111 11 111223332222 33334 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 87 vi~~ag~~ 94 (245)
T PRK12937 87 LVNNAGVM 94 (245)
T ss_pred EEECCCCC
Confidence 99998864
No 228
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=70.70 E-value=56 Score=26.56 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=55.5
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchHHHHHcC-C
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPKIWKDSG-G 99 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~i~~q~~-~ 99 (194)
.+...+.+|.+ .+|...+|..|.+++..|+.+|.+++++.... ..+. ....+. ++.+ ..+..... ..... .
T Consensus 170 ~~~~~~~~g~~--vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~--~~~~g~~~~~~-~~~~~~~~-~~~~~~~ 242 (350)
T cd08274 170 LERAGVGAGET--VLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEA--VRALGADTVIL-RDAPLLAD-AKALGGE 242 (350)
T ss_pred HhhcCCCCCCE--EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHH--HHhcCCeEEEe-CCCccHHH-HHhhCCC
Confidence 34445667755 46666779999999999999999976655432 1111 222232 2222 11111111 22222 3
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.++-++|+- .+-..++...+.-+++-+
T Consensus 243 ~~d~vi~~~g~~----~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 243 PVDVVADVVGGP----LFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCcEEEecCCHH----HHHHHHHHhccCCEEEEe
Confidence 589999998852 233444444455555544
No 229
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=70.62 E-value=60 Score=26.84 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=54.8
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC-C
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG-G 99 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~-~ 99 (194)
...+.++.+ .+|. ..|..|.+++..|+.+|.+.++++... ..+.. ...-+. .+++ +.+..... +.+..+ .
T Consensus 177 ~~~~~~g~~--vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~~--~~~~~~~~~~g~~~vv~-~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 177 TARVRPGDT--VAVI-GCGGVGLNAIQGARIAGASRIIAVDPV--PEKLELARRFGATHTVN-ASEDDAVEAVRDLTDGR 250 (363)
T ss_pred ccCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCCcEEEEcCC--HHHHHHHHHhCCeEEeC-CCCccHHHHHHHHcCCC
Confidence 344556655 3555 579999999999999999734443322 22222 222221 1222 12222111 333332 3
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.+|.++-++|++..+......+ .+.-+++.+.
T Consensus 251 ~vd~vld~~~~~~~~~~~~~~l---~~~G~~v~~g 282 (363)
T cd08279 251 GADYAFEAVGRAATIRQALAMT---RKGGTAVVVG 282 (363)
T ss_pred CCCEEEEcCCChHHHHHHHHHh---hcCCeEEEEe
Confidence 5899999998766555554444 3444565543
No 230
>PRK07035 short chain dehydrogenase; Provisional
Probab=70.34 E-value=24 Score=27.29 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.+++....+.|.+++++-.
T Consensus 11 vlItGas~gIG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 11 ALVTGASRGIGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 489999999999999999999998777654
No 231
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.22 E-value=44 Score=25.98 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=44.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCeE--ecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNAY--LLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~~--~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|..-...|.+++++... ...++.. .+..+.. +.-...++.... +.++. +.+|++
T Consensus 18 vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g~id~l 95 (258)
T PRK06935 18 AIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF-GKIDIL 95 (258)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 5888899999999999999999998887665 2222221 1111111 111122222221 33334 378999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 96 i~~ag~~ 102 (258)
T PRK06935 96 VNNAGTI 102 (258)
T ss_pred EECCCCC
Confidence 9998864
No 232
>PRK08628 short chain dehydrogenase; Provisional
Probab=70.22 E-value=31 Score=26.81 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=45.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hh-cCC-eEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SK-IPN-AYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~-~~~-~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|--|.++|..-.+.|.+++++....... +.. .+ ... .++.-...++.... +.++. +.+|.|
T Consensus 10 ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~v 87 (258)
T PRK08628 10 VIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF-GRIDGL 87 (258)
T ss_pred EEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc-CCCCEE
Confidence 48888899999999999999999987775443222 111 11 111 12222233333222 33333 379999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 i~~ag~~ 94 (258)
T PRK08628 88 VNNAGVN 94 (258)
T ss_pred EECCccc
Confidence 9999854
No 233
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.03 E-value=32 Score=26.19 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=44.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-CeEe-cCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-NAYL-LQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~~~~-~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|...+|..|..++..-.+.|.+++++........+.. .+.. ...+ .....++.... +..++ +.+|.|
T Consensus 8 ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~v 86 (246)
T PRK05653 8 ALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF-GALDIL 86 (246)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh-CCCCEE
Confidence 488999999999999998899999655554322211111 1111 1122 12233332222 22333 368999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 87 i~~ag~~ 93 (246)
T PRK05653 87 VNNAGIT 93 (246)
T ss_pred EECCCcC
Confidence 9998774
No 234
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=69.76 E-value=26 Score=27.64 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=26.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.++|..-.+.|.+++++-..
T Consensus 13 vlVtGas~giG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 13 AVITGGGGVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4888889999999999999999987776543
No 235
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.66 E-value=36 Score=26.28 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=44.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHh---hhcC-C-eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI-QRRM---SKIP-N-AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~-~k~~---~~~~-~-~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.++|..-...|.+++++.....+. .+.. .+.. . .++.-.+.++.... +.++. +++|.
T Consensus 5 vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~ 83 (256)
T PRK12745 5 ALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAW-GRIDC 83 (256)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhc-CCCCE
Confidence 48889999999999998888999887776432221 1111 1111 1 12222233333222 33333 36999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||...|..
T Consensus 84 vi~~ag~~ 91 (256)
T PRK12745 84 LVNNAGVG 91 (256)
T ss_pred EEECCccC
Confidence 99998864
No 236
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.63 E-value=30 Score=26.66 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=43.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh-c-CCe-EecCCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK-I-PNA-YLLQQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~-~-~~~-~~~~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..+|.-|.++|..-...|.++++.........+.... . ... ++.-...++.... +.+..+.++|.+|.
T Consensus 8 ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~li~ 87 (253)
T PRK08642 8 VLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPITTVVN 87 (253)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 48999999999999999889999887755433221111111 1 111 1211233332222 33334434999999
Q ss_pred ecCC
Q 038938 107 GIRT 110 (194)
Q Consensus 107 ~vG~ 110 (194)
.+|.
T Consensus 88 ~ag~ 91 (253)
T PRK08642 88 NALA 91 (253)
T ss_pred CCCc
Confidence 8875
No 237
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.61 E-value=28 Score=27.21 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=41.7
Q ss_pred eEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh--cCCe-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITS--ANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK--IPNA-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~--~~~~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+ +.-|.++|..-++.|.++++.-.. ....+...+ .... ++.-...++.... +.++. +++|.+
T Consensus 10 ~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~iD~l 87 (252)
T PRK06079 10 IVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-DRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV-GKIDGI 87 (252)
T ss_pred EEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-hHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh-CCCCEE
Confidence 3666666 689999999999999997766432 111111111 1111 1211223332222 34444 479999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 v~nAg~~ 94 (252)
T PRK06079 88 VHAIAYA 94 (252)
T ss_pred EEccccc
Confidence 9998864
No 238
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=69.30 E-value=48 Score=27.38 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=61.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---------hhcCCe----------EecCCCCC-------CC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---------SKIPNA----------YLLQQHEN-------PA 89 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---------~~~~~~----------~~~~~~~~-------~~ 89 (194)
+..-.+|-+|.+.|+.++..|++++++-......++.. ..+.|. -.+....+ ..
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~~Dl 85 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKDADL 85 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhccCCE
Confidence 78889999999999999998899999977632211111 000000 00111111 11
Q ss_pred c-------hH----HHHHcCC--CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcc
Q 038938 90 N-------PK----IWKDSGG--KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESA 139 (194)
Q Consensus 90 ~-------~~----i~~q~~~--~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~ 139 (194)
. .+ ++++++. +||+|+.+.=|+=.++.++..++. .-|++|.-..+.+
T Consensus 86 VIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~r---per~iG~HFfNP~ 145 (307)
T COG1250 86 VIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKR---PERFIGLHFFNPV 145 (307)
T ss_pred EEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCC---chhEEEEeccCCC
Confidence 1 11 6666653 689999998888889999888742 2345665555443
No 239
>PRK07024 short chain dehydrogenase; Provisional
Probab=69.07 E-value=26 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|--|.++|..-.+.|.+++++-.
T Consensus 5 vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 5 VFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 588899999999999999999998776654
No 240
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=68.97 E-value=22 Score=22.43 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=28.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTY 67 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~ 67 (194)
++.-.+|..|+-+|.+.+.+|.+++++.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 77788999999999999999999999977653
No 241
>PRK12828 short chain dehydrogenase; Provisional
Probab=68.96 E-value=35 Score=25.87 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|..++|--|.++|....+.|.+++++...
T Consensus 10 vlItGatg~iG~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 10 VAITGGFGGLGRATAAWLAARGARVALIGRG 40 (239)
T ss_pred EEEECCCCcHhHHHHHHHHHCCCeEEEEeCC
Confidence 4899999999999999888899997776653
No 242
>PRK05872 short chain dehydrogenase; Provisional
Probab=68.77 E-value=23 Score=28.48 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=43.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhc--C-CeEe-cCCCCCCCchH-----HHHHcCCCCCEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKI--P-NAYL-LQQHENPANPK-----IWKDSGGKFDALV 105 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~--~-~~~~-~~~~~~~~~~~-----i~~q~~~~~d~vv 105 (194)
.+|+..+|.-|.++|....+.|.+++++-......+....+. . ..+. .-...++.... +.+++ +++|.||
T Consensus 12 vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~id~vI 90 (296)
T PRK05872 12 VVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERF-GGIDVVV 90 (296)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-CCCCEEE
Confidence 588899999999999999999998666543211111111111 1 1111 11122222222 33344 3799999
Q ss_pred EecCCc
Q 038938 106 AGIRTG 111 (194)
Q Consensus 106 ~~vG~G 111 (194)
..+|..
T Consensus 91 ~nAG~~ 96 (296)
T PRK05872 91 ANAGIA 96 (296)
T ss_pred ECCCcC
Confidence 999864
No 243
>PRK07102 short chain dehydrogenase; Provisional
Probab=68.46 E-value=29 Score=26.70 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=44.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhc--CCe-EecCCCCCCCchH-HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKI--PNA-YLLQQHENPANPK-IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~--~~~-~~~~~~~~~~~~~-i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|....+.|.+++++........... ... ... ++.-...++.... +.++...++|.+|..
T Consensus 4 vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ 83 (243)
T PRK07102 4 ILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLIA 83 (243)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEEC
Confidence 488899999999999999999998777755431111110 111 111 1111222222222 444444468999998
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 84 ag~~ 87 (243)
T PRK07102 84 VGTL 87 (243)
T ss_pred CcCC
Confidence 8753
No 244
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.21 E-value=69 Score=26.62 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchHHHHHcCCCCCEE
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPKIWKDSGGKFDAL 104 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~i~~q~~~~~d~v 104 (194)
.+.+|++ |+...+|.-|..++..|+.+|.+.+++.......... +++-|. ..++. .++ ..+.+..+ .+|.|
T Consensus 180 ~~~~g~~---VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~-~~~~Ga~~vi~~-~~~--~~~~~~~~-~~D~v 251 (360)
T PLN02586 180 MTEPGKH---LGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA-INRLGADSFLVS-TDP--EKMKAAIG-TMDYI 251 (360)
T ss_pred ccCCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH-HHhCCCcEEEcC-CCH--HHHHhhcC-CCCEE
Confidence 3456766 6557789999999999999999865554332111111 222332 22221 111 12333333 58999
Q ss_pred EEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 105 VAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 105 v~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|-++|+..++. ..++...+.-+++-+
T Consensus 252 id~~g~~~~~~---~~~~~l~~~G~iv~v 277 (360)
T PLN02586 252 IDTVSAVHALG---PLLGLLKVNGKLITL 277 (360)
T ss_pred EECCCCHHHHH---HHHHHhcCCcEEEEe
Confidence 99998654443 334444555565544
No 245
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.21 E-value=34 Score=27.17 Aligned_cols=76 Identities=18% Similarity=0.129 Sum_probs=42.2
Q ss_pred eEEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCC--eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSA--NAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPN--AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsG--N~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.||+..++ .-|.++|...++.|.+++++-......++.. .+..+ .++.-...++.... +.+++ +++|.
T Consensus 10 ~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~ 88 (271)
T PRK06505 10 GLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW-GKLDF 88 (271)
T ss_pred EEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh-CCCCE
Confidence 46777665 6899999999999998877643211111111 11112 12222223322222 34444 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 89 lVnnAG~~ 96 (271)
T PRK06505 89 VVHAIGFS 96 (271)
T ss_pred EEECCccC
Confidence 99999865
No 246
>PRK05867 short chain dehydrogenase; Provisional
Probab=68.16 E-value=26 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=24.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|..-.+.|.+++++-.
T Consensus 12 vlVtGas~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 12 ALITGASTGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 488888899999999998899998766543
No 247
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=68.09 E-value=16 Score=28.29 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeCCCCCHHH-Hh---hhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecCC
Q 038938 40 TSANAGIGLASIASSRGYKIIVKMPNTYSIQR-RM---SKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 40 SsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k-~~---~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG~ 110 (194)
+|+.-|.++|..-.+.|.++++.-.......+ .. .+.+..++.-...++.... +.++.++++|.+|..+|.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~ 83 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGI 83 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEES
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccc
Confidence 56888999999999999998887665432111 11 2222222222222332222 566664689999988766
Q ss_pred ch
Q 038938 111 GG 112 (194)
Q Consensus 111 GG 112 (194)
..
T Consensus 84 ~~ 85 (241)
T PF13561_consen 84 SP 85 (241)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 248
>PRK07814 short chain dehydrogenase; Provisional
Probab=67.98 E-value=30 Score=27.13 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhh---h-cCCeEec-CCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMS---K-IPNAYLL-QQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~---~-~~~~~~~-~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|--|.++|-.-...|.+++++.......+.... . .....+. -...++.... +.+++ +++|.|
T Consensus 13 vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~v 91 (263)
T PRK07814 13 AVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF-GRLDIV 91 (263)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 4899999999999999888999987776543211111111 1 1112221 1233332222 33344 379999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 92 i~~Ag~~ 98 (263)
T PRK07814 92 VNNVGGT 98 (263)
T ss_pred EECCCCC
Confidence 9998853
No 249
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=67.84 E-value=42 Score=31.08 Aligned_cols=99 Identities=19% Similarity=0.147 Sum_probs=59.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----------hhc-----------CC-eEecCCC---CCC-
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----------SKI-----------PN-AYLLQQH---ENP- 88 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----------~~~-----------~~-~~~~~~~---~~~- 88 (194)
+|..-.+|.+|.++|+.++..|++++++-+.....++.. .+. .+ ......+ .+-
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 394 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVD 394 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCC
Confidence 488889999999999999999999999876533222111 000 00 0111111 111
Q ss_pred CchH-----------HHHHcCC--CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecC
Q 038938 89 ANPK-----------IWKDSGG--KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESV 136 (194)
Q Consensus 89 ~~~~-----------i~~q~~~--~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~ 136 (194)
..++ ++.++.. +||+|++..-|+=.++-++..++. .-|++|.-..
T Consensus 395 lViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~---p~r~ig~Hff 452 (714)
T TIGR02437 395 IVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKR---PENFCGMHFF 452 (714)
T ss_pred EEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCC---cccEEEEecC
Confidence 1111 6666653 589999988888788888877642 2345555444
No 250
>PRK06114 short chain dehydrogenase; Provisional
Probab=67.62 E-value=49 Score=25.67 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=44.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHh---hhcC-C-eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI-QRRM---SKIP-N-AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~-~k~~---~~~~-~-~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|--|.++|..-...|.++++........ .+.. .... . .++.-...++.... +.+++ +++|.
T Consensus 11 ~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g~id~ 89 (254)
T PRK06114 11 AFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL-GALTL 89 (254)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc-CCCCE
Confidence 48888888899999998889999887776433211 1111 1111 1 12222233332222 33334 47999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 90 li~~ag~~ 97 (254)
T PRK06114 90 AVNAAGIA 97 (254)
T ss_pred EEECCCCC
Confidence 99999864
No 251
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=67.47 E-value=31 Score=26.60 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=43.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCC--e-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPN--A-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~--~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|....+.|.+++++-.......... ....+ . ++.-...++.... +.++.+ .+|.|
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~-~id~v 81 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFG-GFDVM 81 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC-CCCEE
Confidence 488889999999999999999998766644321111110 11111 1 1221233333222 334443 79999
Q ss_pred EEecCC
Q 038938 105 VAGIRT 110 (194)
Q Consensus 105 v~~vG~ 110 (194)
|..+|.
T Consensus 82 i~~ag~ 87 (254)
T TIGR02415 82 VNNAGV 87 (254)
T ss_pred EECCCc
Confidence 999876
No 252
>PLN02253 xanthoxin dehydrogenase
Probab=67.14 E-value=30 Score=27.34 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh---cCCeE-ecCCCCCCCchH-----HHHHcCCCCCEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK---IPNAY-LLQQHENPANPK-----IWKDSGGKFDALV 105 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~---~~~~~-~~~~~~~~~~~~-----i~~q~~~~~d~vv 105 (194)
.+|+..+|.-|.++|..-.+.|.+++++-......++...+ ..... +.-...++.... +.++. +++|.+|
T Consensus 21 ~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~-g~id~li 99 (280)
T PLN02253 21 ALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKF-GTLDIMV 99 (280)
T ss_pred EEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHh-CCCCEEE
Confidence 48999999999999999999999887764432111111111 11111 111122222221 33444 3799999
Q ss_pred EecCCc
Q 038938 106 AGIRTG 111 (194)
Q Consensus 106 ~~vG~G 111 (194)
..+|..
T Consensus 100 ~~Ag~~ 105 (280)
T PLN02253 100 NNAGLT 105 (280)
T ss_pred ECCCcC
Confidence 998864
No 253
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=66.94 E-value=34 Score=28.17 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=60.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH------HHh--hhcCCeEecC-CCC----CCCchHHHHHcCCCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQ------RRM--SKIPNAYLLQ-QHE----NPANPKIWKDSGGKFD 102 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~------k~~--~~~~~~~~~~-~~~----~~~~~~i~~q~~~~~d 102 (194)
|-.-.-|+-|+.+|..++-+|+++..+-|...... ..+ ..+.+...++ +.+ +..+...+++| +++
T Consensus 148 vGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M--k~~ 225 (311)
T PRK08410 148 WGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL--KDG 225 (311)
T ss_pred EEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC--CCC
Confidence 88889999999999999999999988866321100 000 1222333222 111 11122256666 689
Q ss_pred EEEEecCCchhH--HHHHHHHHhhCCCceEEEEecC
Q 038938 103 ALVAGIRTGGTI--TGAEKFLKEKNLEMKVYGIESV 136 (194)
Q Consensus 103 ~vv~~vG~GGt~--~Gi~~~l~~~~~~~~vigve~~ 136 (194)
++++=++-|+.+ ..+..+|++ .++. .+.++.
T Consensus 226 a~lIN~aRG~vVDe~AL~~AL~~--g~i~-AaLDV~ 258 (311)
T PRK08410 226 AILINVGRGGIVNEKDLAKALDE--KDIY-AGLDVL 258 (311)
T ss_pred eEEEECCCccccCHHHHHHHHHc--CCeE-EEEecC
Confidence 999999999996 366667653 3556 666653
No 254
>PRK06194 hypothetical protein; Provisional
Probab=66.88 E-value=36 Score=26.94 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=43.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hh-cCCeEec-CCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SK-IPNAYLL-QQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~-~~~~~~~-~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|....+.|.+++++-.......+.. .. .....+. -...++.... +.++. +++|.|
T Consensus 9 vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~-g~id~v 87 (287)
T PRK06194 9 AVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF-GAVHLL 87 (287)
T ss_pred EEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 488889999999999988999998776643221111111 11 1112212 1223322222 33333 368999
Q ss_pred EEecCCch
Q 038938 105 VAGIRTGG 112 (194)
Q Consensus 105 v~~vG~GG 112 (194)
|..+|...
T Consensus 88 i~~Ag~~~ 95 (287)
T PRK06194 88 FNNAGVGA 95 (287)
T ss_pred EECCCCCC
Confidence 99998754
No 255
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.85 E-value=24 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.||+..||--|.++|...++.|.+++++..
T Consensus 10 vlITGAs~GIG~aia~~la~~G~~Vvl~~R 39 (330)
T PRK06139 10 VVITGASSGIGQATAEAFARRGARLVLAAR 39 (330)
T ss_pred EEEcCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 488888899999999999999999777654
No 256
>PRK06482 short chain dehydrogenase; Provisional
Probab=66.82 E-value=39 Score=26.62 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC-Ce-EecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP-NA-YLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~-~~-~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|..-...|.+++++............+.+ .. ++.-...++.... +.++. +++|+||..
T Consensus 5 vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~vi~~ 83 (276)
T PRK06482 5 WFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAAL-GRIDVVVSN 83 (276)
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEEC
Confidence 4899999999999999988999988777654211111111111 11 1111223332221 23333 368999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 84 ag~~ 87 (276)
T PRK06482 84 AGYG 87 (276)
T ss_pred CCCC
Confidence 8865
No 257
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=66.71 E-value=46 Score=25.32 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHh---hhcCC--eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQ-RRM---SKIPN--AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~-k~~---~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|...+|.-|..+|....+.|.+++++...+.... +.. ....+ .++.-.+.++.... +.++. +++|.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~ 81 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAEL-GPIDV 81 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHc-CCCcE
Confidence 488888999999999999999998777654221111 100 11111 12222233332222 33334 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||..+|..
T Consensus 82 vi~~ag~~ 89 (242)
T TIGR01829 82 LVNNAGIT 89 (242)
T ss_pred EEECCCCC
Confidence 99998865
No 258
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=66.60 E-value=42 Score=26.89 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHcCCC-CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 10 PSRIACSMIKDAEDKGSI-SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 10 K~R~a~~~~~~a~~~g~~-~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
--||.+..+..+.+.-.. -+|.+ |+....||-|..+|-....+|.+++-+
T Consensus 17 Tg~Gv~~~~~~~~~~~~~~l~g~~---vaIqGfGnVG~~~a~~L~e~GakvvaV 67 (254)
T cd05313 17 TGYGLVYFVEEMLKDRNETLKGKR---VAISGSGNVAQYAAEKLLELGAKVVTL 67 (254)
T ss_pred hHHHHHHHHHHHHHhcCCCcCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 457777888877664322 34556 999999999999999999999998855
No 259
>PRK07109 short chain dehydrogenase; Provisional
Probab=66.56 E-value=29 Score=28.61 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..||.-|.++|....+.|.+++++.......+... .+..+ . ++.-...++.... +.++++ ++|.+
T Consensus 11 vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g-~iD~l 89 (334)
T PRK07109 11 VVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG-PIDTW 89 (334)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC-CCCEE
Confidence 488888999999999999999998777654321111111 11111 1 1111223332222 333443 79999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 90 InnAg~~ 96 (334)
T PRK07109 90 VNNAMVT 96 (334)
T ss_pred EECCCcC
Confidence 9998864
No 260
>PRK07856 short chain dehydrogenase; Provisional
Probab=65.90 E-value=35 Score=26.47 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=42.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|..-++.|.+++++.... ++......-.++.-...++.... +.++. +++|.||..+|
T Consensus 9 ~lItGas~gIG~~la~~l~~~g~~v~~~~r~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~vi~~ag 84 (252)
T PRK07856 9 VLVTGGTRGIGAGIARAFLAAGATVVVCGRRA---PETVDGRPAEFHAADVRDPDQVAALVDAIVERH-GRLDVLVNNAG 84 (252)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh---hhhhcCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEECCC
Confidence 48888899999999999889999877765432 11111111111111122222221 33444 37999999987
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 85 ~~ 86 (252)
T PRK07856 85 GS 86 (252)
T ss_pred CC
Confidence 53
No 261
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=65.85 E-value=15 Score=27.54 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
|..-.+|..|.++|+.+++.|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 5566779999999999999999999998754
No 262
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.70 E-value=70 Score=25.78 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=55.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcC-C
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSG-G 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~-~ 99 (194)
+...+.+|.+ .+|. ..|..|.+++..|+.+|++.++++..+ .++.. ..+.+. .+++ +.++.... .+... .
T Consensus 153 ~~~~~~~g~~--vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~--~~~~~~~~~~g~~~~~~-~~~~~~~~-~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDS--VLVF-GAGPIGLLLAQLLKLNGASRVTVAEPN--EEKLELAKKLGATETVD-PSREDPEA-QKEDNPY 225 (334)
T ss_pred HhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC--HHHHHHHHHhCCeEEec-CCCCCHHH-HHHhcCC
Confidence 3445566755 3444 578999999999999999844444332 22222 222222 2222 22222111 12222 3
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.+|.++.++|++-++......+ .+.-+++-+.
T Consensus 226 ~vd~v~~~~~~~~~~~~~~~~l---~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATGVPKTLEQAIEYA---RRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCCChHHHHHHHHHH---hcCCEEEEEe
Confidence 5899999998766555554444 3444555443
No 263
>PRK05875 short chain dehydrogenase; Provisional
Probab=65.64 E-value=36 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|......|.+++++..
T Consensus 10 vlItGasg~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 10 YLVTGGGSGIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 488999999999999999999998776654
No 264
>PRK06128 oxidoreductase; Provisional
Probab=65.64 E-value=42 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-.+.|.++++..
T Consensus 58 vlITGas~gIG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 58 ALITGADSGIGRATAIAFAREGADIALNY 86 (300)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 58999999999999999999999887654
No 265
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=65.58 E-value=74 Score=26.02 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=51.4
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGG 99 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~ 99 (194)
++...+.+|++ |+....|..|.+.+..|+.+|.+.+++... ++|.+ ++.-|. +.++.. +.. ..
T Consensus 158 ~~~~~~~~g~~---VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~---~~~~~~a~~~Ga~~vi~~~-~~~--------~~ 222 (329)
T TIGR02822 158 LLRASLPPGGR---LGLYGFGGSAHLTAQVALAQGATVHVMTRG---AAARRLALALGAASAGGAY-DTP--------PE 222 (329)
T ss_pred HHhcCCCCCCE---EEEEcCCHHHHHHHHHHHHCCCeEEEEeCC---hHHHHHHHHhCCceecccc-ccC--------cc
Confidence 33445667766 555556889999999999999975544332 23333 333332 222211 110 12
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVY 131 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vi 131 (194)
.+|.++...|.|.++. ..++...+.-+++
T Consensus 223 ~~d~~i~~~~~~~~~~---~~~~~l~~~G~~v 251 (329)
T TIGR02822 223 PLDAAILFAPAGGLVP---PALEALDRGGVLA 251 (329)
T ss_pred cceEEEECCCcHHHHH---HHHHhhCCCcEEE
Confidence 4788888888876544 4444444544443
No 266
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=65.53 E-value=42 Score=26.22 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=25.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..++.-|.++|..-.+.|.+++++..
T Consensus 11 vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 11 LVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 488888899999999999999999766543
No 267
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.49 E-value=32 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=26.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.++|..-.+.|.+++++...
T Consensus 6 ilItGas~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 6 AIVTGGGGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 4888899999999999999999987776543
No 268
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=65.47 E-value=46 Score=25.38 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=43.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.++|..-.+.|.++++.........+.. ..... . ++.-...++.... +.++. +++|.
T Consensus 5 vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~~id~ 83 (245)
T PRK12824 5 ALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEE-GPVDI 83 (245)
T ss_pred EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCE
Confidence 478888999999999888888988777765432111111 11111 1 2222233332222 33334 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 84 vi~~ag~~ 91 (245)
T PRK12824 84 LVNNAGIT 91 (245)
T ss_pred EEECCCCC
Confidence 99998864
No 269
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=65.37 E-value=57 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=24.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|--|.++|....+.|.++++..
T Consensus 9 ~lItG~s~~iG~~la~~l~~~g~~v~~~~ 37 (247)
T PRK12935 9 AIVTGGAKGIGKAITVALAQEGAKVVINY 37 (247)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCEEEEEc
Confidence 48888899999999998889999876544
No 270
>PRK08263 short chain dehydrogenase; Provisional
Probab=65.35 E-value=39 Score=26.65 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=43.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|-.|..+|......|.+++++...............+ . ++.-...++.... +.+.+ +.+|+||..
T Consensus 6 vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d~vi~~ 84 (275)
T PRK08263 6 WFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHF-GRLDIVVNN 84 (275)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEEC
Confidence 48888999999999999988998866655432111111111111 1 1111122322222 22333 379999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 85 ag~~ 88 (275)
T PRK08263 85 AGYG 88 (275)
T ss_pred CCCc
Confidence 9875
No 271
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=65.29 E-value=34 Score=26.61 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=42.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC--CeEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP--NAYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~--~~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|--|.++|..-...|.+++++.......+... .... -.++.-...++.... +.++. +++|.|
T Consensus 15 ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~-~~id~v 93 (259)
T PRK08213 15 ALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF-GHVDIL 93 (259)
T ss_pred EEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-CCCCEE
Confidence 488888899999999888889998766544221111111 1111 112222334433332 33444 369999
Q ss_pred EEecCC
Q 038938 105 VAGIRT 110 (194)
Q Consensus 105 v~~vG~ 110 (194)
|..+|.
T Consensus 94 i~~ag~ 99 (259)
T PRK08213 94 VNNAGA 99 (259)
T ss_pred EECCCC
Confidence 999875
No 272
>PRK09134 short chain dehydrogenase; Provisional
Probab=65.08 E-value=46 Score=25.84 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|..+|....+.|.+++++..
T Consensus 12 vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 12 ALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 489999999999999999999998877654
No 273
>PRK09242 tropinone reductase; Provisional
Probab=64.94 E-value=37 Score=26.36 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=43.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhc--CC-eE-ecCCCCCCCchH-----HHHHcCCCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKI--PN-AY-LLQQHENPANPK-----IWKDSGGKFD 102 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~--~~-~~-~~~~~~~~~~~~-----i~~q~~~~~d 102 (194)
.+|+..+|.-|.++|......|.+++++.......++.. ... .+ .+ +.-...++.... +.+++ +++|
T Consensus 12 ~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id 90 (257)
T PRK09242 12 ALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW-DGLH 90 (257)
T ss_pred EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc-CCCC
Confidence 488888999999999999999998776654321111111 111 11 11 111223332222 33344 3799
Q ss_pred EEEEecCCc
Q 038938 103 ALVAGIRTG 111 (194)
Q Consensus 103 ~vv~~vG~G 111 (194)
+||..+|..
T Consensus 91 ~li~~ag~~ 99 (257)
T PRK09242 91 ILVNNAGGN 99 (257)
T ss_pred EEEECCCCC
Confidence 999999864
No 274
>PRK06101 short chain dehydrogenase; Provisional
Probab=64.91 E-value=39 Score=26.00 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=43.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hh-cCCe-EecCCCCCCCchH-HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SK-IPNA-YLLQQHENPANPK-IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~-~~~~-~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|..-...|.+++++... .++.+ .+ .... ++.-...++.... ++++....+|.+|+.+|
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 4889999999999998888899997776543 22221 11 1111 1211222222222 55555446888888776
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 81 ~~ 82 (240)
T PRK06101 81 DC 82 (240)
T ss_pred cc
Confidence 54
No 275
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=64.87 E-value=43 Score=25.79 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=44.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcC-Ce-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIP-NA-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~-~~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..||..|.++|..-...|.+++++........+.. .... .. ++.-.+.++.... +.++. +.+|.|
T Consensus 7 vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~~d~v 85 (258)
T PRK12429 7 ALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF-GGVDIL 85 (258)
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 488888999999999988889998877755432222211 1111 11 1222233333222 22333 369999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 86 i~~a~~~ 92 (258)
T PRK12429 86 VNNAGIQ 92 (258)
T ss_pred EECCCCC
Confidence 9998864
No 276
>PRK12829 short chain dehydrogenase; Provisional
Probab=64.85 E-value=37 Score=26.32 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=44.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC---eEecCCCCCCCchH-----HHHHcCCCCCEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN---AYLLQQHENPANPK-----IWKDSGGKFDALVA 106 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~---~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~ 106 (194)
.+|+..+|.-|..+|-.....|.+++++............+.++ .++.-...++.... +.+++ +++|.||.
T Consensus 14 vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d~vi~ 92 (264)
T PRK12829 14 VLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERF-GGLDVLVN 92 (264)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 48999999999999999999999876666432111111111111 11221233333222 22233 36999999
Q ss_pred ecCCc
Q 038938 107 GIRTG 111 (194)
Q Consensus 107 ~vG~G 111 (194)
.+|..
T Consensus 93 ~ag~~ 97 (264)
T PRK12829 93 NAGIA 97 (264)
T ss_pred CCCCC
Confidence 98865
No 277
>PRK09186 flagellin modification protein A; Provisional
Probab=64.84 E-value=47 Score=25.64 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|-.....|.+++++..
T Consensus 7 vlItGas~giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 7 ILITGAGGLIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 589999999999999999999998777643
No 278
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=64.84 E-value=75 Score=25.80 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCC-CC
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYK-IIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGG-KF 101 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~-~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~-~~ 101 (194)
.+.++.. .+|. .+|..|.++...|+.+|.+ ++++.+.. ++.. ....+. .+++ +.++....+....++ .+
T Consensus 156 ~~~~~~~--vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~~~---~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDT--VVVI-GAGTIGLLAIQWLKILGAKRVIAVDIDD---EKLAVARELGADDTIN-PKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCCH---HHHHHHHHcCCCEEec-CccccHHHHHHHhCCCCC
Confidence 4556655 3455 5788999999999999998 54443322 2221 122221 1222 222331224444443 48
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
|.++-++|++-.+.-+...+ .+.-+++.+.
T Consensus 229 d~vld~~g~~~~~~~~~~~l---~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAAGSPATIEQALALA---RPGGKVVLVG 258 (343)
T ss_pred CEEEECCCCHHHHHHHHHHh---hcCCEEEEEc
Confidence 99999987765554444444 3444565553
No 279
>PRK09072 short chain dehydrogenase; Provisional
Probab=64.76 E-value=24 Score=27.56 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=43.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh--cCC--eEecCCCCCCCchH-HHHHc--CCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK--IPN--AYLLQQHENPANPK-IWKDS--GGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~--~~~--~~~~~~~~~~~~~~-i~~q~--~~~~d~vv~~ 107 (194)
.+|+..+|-.|.++|......|.+++++............+ .++ .++.-...++.... +.++. -+++|.+|..
T Consensus 8 vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ 87 (263)
T PRK09072 8 VLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLINN 87 (263)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 48888999999999999999999877765432111111111 111 11211223332222 22222 2479999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 88 ag~~ 91 (263)
T PRK09072 88 AGVN 91 (263)
T ss_pred CCCC
Confidence 8864
No 280
>PRK06701 short chain dehydrogenase; Provisional
Probab=64.70 E-value=47 Score=26.63 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHh---hhcC-Ce-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI-QRRM---SKIP-NA-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~-~k~~---~~~~-~~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|.++|..-.+.|.+++++....... .... .... .. ++.-...+..... +.++.+ ++|.
T Consensus 49 iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~-~iD~ 127 (290)
T PRK06701 49 ALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG-RLDI 127 (290)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC-CCCE
Confidence 47888899999999999999999987775543221 1111 1111 11 1111122222222 334443 7999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||..+|.+
T Consensus 128 lI~~Ag~~ 135 (290)
T PRK06701 128 LVNNAAFQ 135 (290)
T ss_pred EEECCccc
Confidence 99988864
No 281
>PRK08017 oxidoreductase; Provisional
Probab=64.46 E-value=42 Score=25.89 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=43.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|..-.+.|.+++++.... ++.+ ....+. ++.....++.... +.....+.+|.+|..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ 81 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP---DDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN 81 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH---HHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 48888899999999999999999876654432 2221 111121 1221222222111 222233568999998
Q ss_pred cCCch
Q 038938 108 IRTGG 112 (194)
Q Consensus 108 vG~GG 112 (194)
.|.+.
T Consensus 82 ag~~~ 86 (256)
T PRK08017 82 AGFGV 86 (256)
T ss_pred CCCCC
Confidence 88653
No 282
>PRK07063 short chain dehydrogenase; Provisional
Probab=64.41 E-value=36 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=24.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|--|.++|..-...|.+++++..
T Consensus 10 vlVtGas~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 10 ALVTGAAQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 488888899999999988899998776644
No 283
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.40 E-value=38 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=24.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|...+|.-|.++|......|.+++++..
T Consensus 8 ~lItG~~g~iG~~~a~~l~~~G~~vi~~~r 37 (253)
T PRK08217 8 IVITGGAQGLGRAMAEYLAQKGAKLALIDL 37 (253)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 478888899999999999999998766543
No 284
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.32 E-value=44 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=27.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|...+|.-|.+++....+.|.+++++...
T Consensus 8 vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 8 VAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999999999999988877654
No 285
>PRK12827 short chain dehydrogenase; Provisional
Probab=64.30 E-value=50 Score=25.23 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=25.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|--|.++|......|.+++++..
T Consensus 9 ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 9 VLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred EEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 488899999999999999999999777653
No 286
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=64.18 E-value=50 Score=25.66 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcC-CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 12 RIACSMIKDAEDKG-SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 12 R~a~~~~~~a~~~g-~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
||.+..+..+.+.- .--.|.+ ++....||-|..+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~---vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLT---VAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCE---EEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 56677777666542 2224555 999999999999999999999988877643
No 287
>PRK06949 short chain dehydrogenase; Provisional
Probab=64.14 E-value=37 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|...+|.-|.++|....+.|.+++++..
T Consensus 12 ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 12 ALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 588889999999999999999998766654
No 288
>PRK05876 short chain dehydrogenase; Provisional
Probab=64.12 E-value=35 Score=27.13 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=24.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-++.|.+++++.
T Consensus 9 vlVTGas~gIG~ala~~La~~G~~Vv~~~ 37 (275)
T PRK05876 9 AVITGGASGIGLATGTEFARRGARVVLGD 37 (275)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 58888899999999999999999876654
No 289
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=64.08 E-value=68 Score=25.08 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=51.8
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcC-CC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYK-IIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSG-GK 100 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~-~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~-~~ 100 (194)
...+.+|++ ++....|..|.++...|+.+|.+ ++++.. +.++.. +++.+. .+...+.. -.+.. ..
T Consensus 92 ~~~~~~g~~---vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~---~~~~~~~~~~~g~--~~~~~~~~----~~~~~~~~ 159 (277)
T cd08255 92 DAEPRLGER---VAVVGLGLVGLLAAQLAKAAGAREVVGVDP---DAARRELAEALGP--ADPVAADT----ADEIGGRG 159 (277)
T ss_pred hcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCcEEEECC---CHHHHHHHHHcCC--Cccccccc----hhhhcCCC
Confidence 445667766 54446799999999999999998 544322 223332 232220 01100000 01112 35
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.|+.++|++..+.-....+ .+.-+++-+
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l---~~~g~~~~~ 189 (277)
T cd08255 160 ADVVIEASGSPSALETALRLL---RDRGRVVLV 189 (277)
T ss_pred CCEEEEccCChHHHHHHHHHh---cCCcEEEEE
Confidence 899999988776554444444 455455433
No 290
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=64.07 E-value=78 Score=25.75 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCC-CCchH-HHHHcCC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHEN-PANPK-IWKDSGG 99 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~-~~~~~-i~~q~~~ 99 (194)
...+.++.+ .+|.. .|..|.++...|+.+|++.+++.... ++.+ ....+. .+++ +.+ ..... +.....+
T Consensus 160 ~~~~~~~~~--vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~---~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~ 232 (345)
T cd08260 160 QARVKPGEW--VAVHG-CGGVGLSAVMIASALGARVIAVDIDD---DKLELARELGAVATVN-ASEVEDVAAAVRDLTGG 232 (345)
T ss_pred ccCCCCCCE--EEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCH---HHHHHHHHhCCCEEEc-cccchhHHHHHHHHhCC
Confidence 334556655 45655 79999999999999999876665432 2222 222221 1222 222 11111 3333333
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.++-++|++.++.-....+ .+.-+++-+
T Consensus 233 ~~d~vi~~~g~~~~~~~~~~~l---~~~g~~i~~ 263 (345)
T cd08260 233 GAHVSVDALGIPETCRNSVASL---RKRGRHVQV 263 (345)
T ss_pred CCCEEEEcCCCHHHHHHHHHHh---hcCCEEEEe
Confidence 6899999988755544444443 344455433
No 291
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.07 E-value=79 Score=25.78 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=54.3
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCc---hH-HHH
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPAN---PK-IWK 95 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~---~~-i~~ 95 (194)
.+...+.+|.+ .+|. .+|..|.+++..|+.+|.+.++++..+ .++.. .+..+. .+++ +.+... .. +.+
T Consensus 155 ~~~~~~~~g~~--vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~~~~ 228 (343)
T cd05285 155 CRRAGVRPGDT--VLVF-GAGPIGLLTAAVAKAFGATKVVVTDID--PSRLEFAKELGATHTVN-VRTEDTPESAEKIAE 228 (343)
T ss_pred HHhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC--HHHHHHHHHcCCcEEec-cccccchhHHHHHHH
Confidence 35566777766 4554 568889999999999999843444222 22222 111122 2222 222221 11 334
Q ss_pred HcCC-CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 96 DSGG-KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 96 q~~~-~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+++ .+|.|+-++|+.-.+.-. ++...+.-+++.+
T Consensus 229 ~~~~~~~d~vld~~g~~~~~~~~---~~~l~~~G~~v~~ 264 (343)
T cd05285 229 LLGGKGPDVVIECTGAESCIQTA---IYATRPGGTVVLV 264 (343)
T ss_pred HhCCCCCCEEEECCCCHHHHHHH---HHHhhcCCEEEEE
Confidence 4443 489999988865333333 3333344455544
No 292
>PRK06125 short chain dehydrogenase; Provisional
Probab=64.04 E-value=42 Score=26.09 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=43.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhc-CC-e-EecCCCCCCCchH-HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKI-PN-A-YLLQQHENPANPK-IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~-~~-~-~~~~~~~~~~~~~-i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|......|.+++++-.......+.. ... .. . ++.-...++.... ++++. +++|.+|..
T Consensus 10 vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-g~id~lv~~ 88 (259)
T PRK06125 10 VLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEA-GDIDILVNN 88 (259)
T ss_pred EEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHh-CCCCEEEEC
Confidence 488888999999999999999997666653321111111 111 11 1 1111122222222 45555 379999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 89 ag~~ 92 (259)
T PRK06125 89 AGAI 92 (259)
T ss_pred CCCC
Confidence 8863
No 293
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=63.92 E-value=25 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHcCCCCCCCccceEEEeCC---ChHHHHHHHHHHHcCCcEEEEeCCCC
Q 038938 22 EDKGSISPGKQYNVLVEITS---ANAGIGLASIASSRGYKIIVKMPNTY 67 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSs---GN~g~a~A~~a~~~Gl~~~iv~p~~~ 67 (194)
+..|.+ +|.+ |+.... +|...++..+++++|++++++.|+..
T Consensus 143 e~~g~l-~g~~---va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 143 EEFGRL-DGLK---IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred HHhCCC-CCCE---EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccc
Confidence 345654 4555 777777 48999999999999999999999875
No 294
>PRK07023 short chain dehydrogenase; Provisional
Probab=63.60 E-value=51 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=26.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.++|..-.+.|.+++++...
T Consensus 4 vlItGasggiG~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred EEEecCCcchHHHHHHHHHhCCCEEEEEecC
Confidence 4899999999999999998999998777544
No 295
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=63.36 E-value=13 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 40 TSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 40 SsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
.+|=.|++.|+..++.|.+++|+=...
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 368899999999999999998886544
No 296
>PRK08589 short chain dehydrogenase; Validated
Probab=63.27 E-value=43 Score=26.40 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCeE--ecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNAY--LLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~~--~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..++.-|.++|..-...|.+++++-.. ...++.. .+..+.. +.-...++.... +.+++ +++|.+
T Consensus 9 vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id~l 86 (272)
T PRK08589 9 AVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF-GRVDVL 86 (272)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc-CCcCEE
Confidence 4888888889999998888899988877554 2111111 1111111 111223332222 33344 379999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 87 i~~Ag~~ 93 (272)
T PRK08589 87 FNNAGVD 93 (272)
T ss_pred EECCCCC
Confidence 9998864
No 297
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=63.17 E-value=77 Score=25.40 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcCCC
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSGGK 100 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~~~ 100 (194)
.+.+.+.+|.+ .+|. .+|-.|.+++..|+.+|.+.+++... .++.+ .+..|......+.+. .-+..
T Consensus 148 ~~~~~~~~g~~--vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~~~~~~-------~~~~~ 214 (319)
T cd08242 148 LEQVPITPGDK--VAVL-GDGKLGLLIAQVLALTGPDVVLVGRH---SEKLALARRLGVETVLPDEAE-------SEGGG 214 (319)
T ss_pred HHhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEeCcccc-------ccCCC
Confidence 34555667765 3444 57999999999999999995444322 33332 222332211111111 01135
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYG 132 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vig 132 (194)
+|.++-++|+..++.-. ++...+.-+++.
T Consensus 215 ~d~vid~~g~~~~~~~~---~~~l~~~g~~v~ 243 (319)
T cd08242 215 FDVVVEATGSPSGLELA---LRLVRPRGTVVL 243 (319)
T ss_pred CCEEEECCCChHHHHHH---HHHhhcCCEEEE
Confidence 89999998765444333 333344556654
No 298
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=62.93 E-value=49 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=27.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|..-..|+.|.++|...+.+|++++++-+.
T Consensus 149 VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~ 178 (330)
T PRK12480 149 VAIIGTGRIGAATAKIYAGFGATITAYDAY 178 (330)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 888899999999999999999999888654
No 299
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=62.91 E-value=92 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
..+.+|.+ .+|...+|..|.+++..|+.+|.+.+++.
T Consensus 185 ~~~~~g~~--vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~ 221 (398)
T TIGR01751 185 ATVKPGDN--VLIWGAAGGLGSYATQLARAGGGNPVAVV 221 (398)
T ss_pred cCCCCCCE--EEEEcCCcHHHHHHHHHHHHcCCeEEEEc
Confidence 34556655 45666679999999999999999976554
No 300
>PRK06138 short chain dehydrogenase; Provisional
Probab=62.84 E-value=44 Score=25.67 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhh--cCC--eEecCCCCCCCchH-----HHHHcCCCCCEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSK--IPN--AYLLQQHENPANPK-----IWKDSGGKFDALV 105 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~--~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~vv 105 (194)
.+|+..+|--|..+|..-.+.|.+++++............+ ... .++.-...++.... +.+++ +++|.||
T Consensus 8 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~-~~id~vi 86 (252)
T PRK06138 8 AIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARW-GRLDVLV 86 (252)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEEE
Confidence 48999999999999998888898876665432111111111 011 11211233332222 33444 3799999
Q ss_pred EecCCc
Q 038938 106 AGIRTG 111 (194)
Q Consensus 106 ~~vG~G 111 (194)
..+|..
T Consensus 87 ~~ag~~ 92 (252)
T PRK06138 87 NNAGFG 92 (252)
T ss_pred ECCCCC
Confidence 998864
No 301
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.49 E-value=60 Score=25.44 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=41.5
Q ss_pred eEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhc-CCe--EecCCCCCCCchH-----HHHHcCCCC
Q 038938 35 VLVEITS--ANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKI-PNA--YLLQQHENPANPK-----IWKDSGGKF 101 (194)
Q Consensus 35 ~vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~-~~~--~~~~~~~~~~~~~-----i~~q~~~~~ 101 (194)
.+|+..+ +.-|.++|..-++.|.++++.-......++.+ .+. .+. ++.-...++.... +.+++ +++
T Consensus 10 ~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~l 88 (257)
T PRK08594 10 YVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV-GVI 88 (257)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC-CCc
Confidence 3666654 78899999999999998776543211112111 111 111 1221223332222 33444 479
Q ss_pred CEEEEecCCc
Q 038938 102 DALVAGIRTG 111 (194)
Q Consensus 102 d~vv~~vG~G 111 (194)
|.+|..+|..
T Consensus 89 d~lv~nag~~ 98 (257)
T PRK08594 89 HGVAHCIAFA 98 (257)
T ss_pred cEEEECcccC
Confidence 9999988754
No 302
>PRK06523 short chain dehydrogenase; Provisional
Probab=62.29 E-value=43 Score=26.00 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=42.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|..-++.|.+++++..... +. ....-.++.-...++.... +.++. +.+|.||..+|
T Consensus 12 vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~vi~~ag 86 (260)
T PRK06523 12 ALVTGGTKGIGAATVARLLEAGARVVTTARSRP---DD-LPEGVEFVAADLTTAEGCAAVARAVLERL-GGVDILVHVLG 86 (260)
T ss_pred EEEECCCCchhHHHHHHHHHCCCEEEEEeCChh---hh-cCCceeEEecCCCCHHHHHHHHHHHHHHc-CCCCEEEECCc
Confidence 589999999999999999999999777654321 11 1111111211233332222 23333 47999999988
Q ss_pred C
Q 038938 110 T 110 (194)
Q Consensus 110 ~ 110 (194)
.
T Consensus 87 ~ 87 (260)
T PRK06523 87 G 87 (260)
T ss_pred c
Confidence 4
No 303
>PRK06398 aldose dehydrogenase; Validated
Probab=62.24 E-value=36 Score=26.65 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=41.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|--|.++|..-.+.|.+++++-..... .. .-.++.-...++.... +.++.+ .+|.+|..+|
T Consensus 9 vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-----~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~-~id~li~~Ag 81 (258)
T PRK06398 9 AIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-----YN-DVDYFKVDVSNKEQVIKGIDYVISKYG-RIDILVNNAG 81 (258)
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-----cC-ceEEEEccCCCHHHHHHHHHHHHHHcC-CCCEEEECCC
Confidence 4888888889999999999999987776432211 00 1112211233332222 333343 6999999887
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 82 ~~ 83 (258)
T PRK06398 82 IE 83 (258)
T ss_pred CC
Confidence 64
No 304
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=62.15 E-value=95 Score=26.06 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=51.9
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCCCCCEEE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGGKFDALV 105 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~~~d~vv 105 (194)
.+|++ |+...+|.-|.+++..|+.+|.+.+++.+.. ..+.. +++-|. +.++. .++ ..+.+..+ .+|.|+
T Consensus 177 ~~g~~---VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~--~~~~~~a~~lGa~~~i~~-~~~--~~v~~~~~-~~D~vi 247 (375)
T PLN02178 177 ESGKR---LGVNGLGGLGHIAVKIGKAFGLRVTVISRSS--EKEREAIDRLGADSFLVT-TDS--QKMKEAVG-TMDFII 247 (375)
T ss_pred CCCCE---EEEEcccHHHHHHHHHHHHcCCeEEEEeCCh--HHhHHHHHhCCCcEEEcC-cCH--HHHHHhhC-CCcEEE
Confidence 35666 6556679999999999999999865554332 12111 222332 22221 111 12444443 589999
Q ss_pred EecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 106 AGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 106 ~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
-++|+..++.-. ++...+.-+++-+
T Consensus 248 d~~G~~~~~~~~---~~~l~~~G~iv~v 272 (375)
T PLN02178 248 DTVSAEHALLPL---FSLLKVSGKLVAL 272 (375)
T ss_pred ECCCcHHHHHHH---HHhhcCCCEEEEE
Confidence 998866444333 3333444455433
No 305
>PRK07677 short chain dehydrogenase; Provisional
Probab=62.02 E-value=44 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|....+.|.+++++..
T Consensus 4 ~lItG~s~giG~~ia~~l~~~G~~Vi~~~r 33 (252)
T PRK07677 4 VIITGGSSGMGKAMAKRFAEEGANVVITGR 33 (252)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 488889999999999999999997666543
No 306
>PRK06436 glycerate dehydrogenase; Provisional
Probab=61.86 E-value=86 Score=25.74 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=52.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC---------HHHHhhhcCCeEecCCCCCCC-----chHHHHHcCCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYS---------IQRRMSKIPNAYLLQQHENPA-----NPKIWKDSGGKF 101 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~---------~~k~~~~~~~~~~~~~~~~~~-----~~~i~~q~~~~~ 101 (194)
+-.-.-||-|+.+|..++.+|++++++-+.... .+.. .++.+.....--.++. +...++++ ++
T Consensus 125 vgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~el-l~~aDiv~~~lp~t~~T~~li~~~~l~~m--k~ 201 (303)
T PRK06436 125 LGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDI-MKKSDFVLISLPLTDETRGMINSKMLSLF--RK 201 (303)
T ss_pred EEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHH-HhhCCEEEECCCCCchhhcCcCHHHHhcC--CC
Confidence 888899999999999999999999888753211 0111 2223333332111121 11145555 57
Q ss_pred CEEEEecCCchhHH--HHHHHHH
Q 038938 102 DALVAGIRTGGTIT--GAEKFLK 122 (194)
Q Consensus 102 d~vv~~vG~GGt~~--Gi~~~l~ 122 (194)
+++++=+|.|+.+- .+..+++
T Consensus 202 ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 202 GLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred CeEEEECCCccccCHHHHHHHHH
Confidence 89999999999864 4445554
No 307
>PRK07806 short chain dehydrogenase; Provisional
Probab=61.81 E-value=63 Score=24.78 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.+++......|.+++++...
T Consensus 9 vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 9 ALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred EEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4888889999999999988999998776543
No 308
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=61.78 E-value=33 Score=26.16 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=41.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchH-HHHHcCCCCCEEEEecCCch
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPK-IWKDSGGKFDALVAGIRTGG 112 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~GG 112 (194)
.+|+.++|.-|.++|....+.|....++.-........ ..+.. ++.-...++.... +.++++ .+|++|..+|...
T Consensus 3 vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~Dls~~~~~~~~~~~~~-~id~li~~aG~~~ 79 (235)
T PRK09009 3 ILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDF--QHDNVQWHALDVTDEAEIKQLSEQFT-QLDWLINCVGMLH 79 (235)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcccc--ccCceEEEEecCCCHHHHHHHHHhcC-CCCEEEECCcccc
Confidence 58999999999999988888764444432111111111 11111 1211223332222 555664 7999999999864
No 309
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=61.69 E-value=30 Score=29.48 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=58.9
Q ss_pred HHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH---------HHHhhhcCCeEecC-CCCC--
Q 038938 20 DAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI---------QRRMSKIPNAYLLQ-QHEN-- 87 (194)
Q Consensus 20 ~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~---------~k~~~~~~~~~~~~-~~~~-- 87 (194)
.+...|..-.|.+ |-.-.-||.|..+|..++.+|+++.++-|..... +.. .++-+...++ +.+.
T Consensus 106 l~r~~g~~l~gkt---vGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~el-l~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 106 LAEREGVDLAERT---YGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERI-LEECDVISLHTPLTKEG 181 (381)
T ss_pred HhcccCCCcCcCE---EEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHH-HhhCCEEEEeCcCCCCc
Confidence 3334443335556 8888999999999999999999999987643211 111 1222322221 2211
Q ss_pred ------CCchHHHHHcCCCCCEEEEecCCchhHH--HHHHHHH
Q 038938 88 ------PANPKIWKDSGGKFDALVAGIRTGGTIT--GAEKFLK 122 (194)
Q Consensus 88 ------~~~~~i~~q~~~~~d~vv~~vG~GGt~~--Gi~~~l~ 122 (194)
..+...+.++ +++.+++=++-|+.+- .+..+++
T Consensus 182 ~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 182 EHPTRHLLDEAFLASL--RPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cccccccCCHHHHhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 1122245555 5899999999999964 4444554
No 310
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=61.55 E-value=48 Score=25.84 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-----HHHHcCCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-----IWKDSGGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|....+.|.+++++........ .... .++.-...++.... +.++. +++|.+|..+|
T Consensus 12 vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~-g~id~li~~Ag 86 (266)
T PRK06171 12 IIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ---HENY-QFVPTDVSSAEEVNHTVAEIIEKF-GRIDGLVNNAG 86 (266)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc---cCce-EEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEECCc
Confidence 488889999999999999999998877654321110 1111 11211122222222 23333 37999999988
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 87 ~~ 88 (266)
T PRK06171 87 IN 88 (266)
T ss_pred cc
Confidence 53
No 311
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=61.46 E-value=15 Score=27.01 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=28.2
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCC--CCH
Q 038938 36 LVEITS--ANAGIGLASIASSRGYKIIVKMPNT--YSI 69 (194)
Q Consensus 36 vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~p~~--~~~ 69 (194)
++-... +|...|++..++++|+..+++.|+. .+.
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~ 42 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPP 42 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSH
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCC
Confidence 444443 7999999999999999999999998 454
No 312
>PRK09414 glutamate dehydrogenase; Provisional
Probab=61.35 E-value=40 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHcCCC-CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 10 PSRIACSMIKDAEDKGSI-SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 10 K~R~a~~~~~~a~~~g~~-~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
--||.+..+..+.+.... -+|.+ |+....||-|..+|.....+|.+++.+.
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~r---VaIqGfGnVG~~~A~~L~~~GakVVavs 262 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKR---VVVSGSGNVAIYAIEKAQQLGAKVVTCS 262 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 456777778777664332 24556 9999999999999999999999988774
No 313
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=61.29 E-value=53 Score=25.22 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=43.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHc---CCCCCEEEEecCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDS---GGKFDALVAGIRT 110 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~---~~~~d~vv~~vG~ 110 (194)
.+|+..+|.-|.++|..-.+.|.+++++.... ... ....-.++.-...++.... ++++. -+++|.||..+|.
T Consensus 11 vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 11 VWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---LTQ-EDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGI 86 (252)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEecch---hhh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 48888899999999999999999988876543 111 1111112222223332222 22221 1468999999886
Q ss_pred c
Q 038938 111 G 111 (194)
Q Consensus 111 G 111 (194)
.
T Consensus 87 ~ 87 (252)
T PRK08220 87 L 87 (252)
T ss_pred C
Confidence 4
No 314
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.28 E-value=85 Score=26.15 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=42.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh------hhcCC-eEecCCCCCCCchH-HHHHc---CCCCCEE
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM------SKIPN-AYLLQQHENPANPK-IWKDS---GGKFDAL 104 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~-i~~q~---~~~~d~v 104 (194)
+|+.-|---|.++|..|++.|-+++++..+........ .+..+ .|+.....+.+... ..+++ .+.||.+
T Consensus 37 ~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~d~l 116 (331)
T KOG1210|consen 37 LITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPIDNL 116 (331)
T ss_pred EEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCcceE
Confidence 55555556778888899999999999987654333222 11111 11111111111111 44444 3679999
Q ss_pred EEecCC
Q 038938 105 VAGIRT 110 (194)
Q Consensus 105 v~~vG~ 110 (194)
|+++|.
T Consensus 117 ~~cAG~ 122 (331)
T KOG1210|consen 117 FCCAGV 122 (331)
T ss_pred EEecCc
Confidence 999876
No 315
>PRK07062 short chain dehydrogenase; Provisional
Probab=61.27 E-value=46 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=26.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..++.-|.++|......|.+++++...
T Consensus 11 ~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 11 AVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4888899999999999999999997776553
No 316
>PRK06914 short chain dehydrogenase; Provisional
Probab=61.24 E-value=51 Score=25.96 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|--|.++|..-...|.+++++...
T Consensus 6 ~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 6 AIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 4899999999999999888899998777543
No 317
>PLN03139 formate dehydrogenase; Provisional
Probab=61.24 E-value=75 Score=27.14 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=26.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|-.-.-|+.|..+|..++.+|++++++-+.
T Consensus 202 VGIVG~G~IG~~vA~~L~afG~~V~~~d~~ 231 (386)
T PLN03139 202 VGTVGAGRIGRLLLQRLKPFNCNLLYHDRL 231 (386)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEECCC
Confidence 877889999999999999999998777554
No 318
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=61.22 E-value=49 Score=25.58 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..+|.-|.++|..-.+.|.+++++-.......... .+... . ++.-...++.... +.++.+ ++|.+
T Consensus 14 ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~-~id~v 92 (256)
T PRK06124 14 ALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG-RLDIL 92 (256)
T ss_pred EEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC-CCCEE
Confidence 488889999999999988889998777655321111111 11111 1 1111223332222 333343 78999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 93 i~~ag~~ 99 (256)
T PRK06124 93 VNNVGAR 99 (256)
T ss_pred EECCCCC
Confidence 9998864
No 319
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.19 E-value=57 Score=24.83 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=43.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|...+|.-|..+|......|.++++++..+....+.. ..... . ++.-...++.... +.++++ ++|.
T Consensus 8 ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~id~ 86 (247)
T PRK05565 8 AIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG-KIDI 86 (247)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC-CCCE
Confidence 488888999999999988888998777633322211111 11111 1 1222233332222 233333 6999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
||..+|..
T Consensus 87 vi~~ag~~ 94 (247)
T PRK05565 87 LVNNAGIS 94 (247)
T ss_pred EEECCCcC
Confidence 99998875
No 320
>PRK08278 short chain dehydrogenase; Provisional
Probab=60.99 E-value=51 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|--|.++|....+.|.+++++...
T Consensus 9 vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (273)
T PRK08278 9 LFITGASRGIGLAIALRAARDGANIVIAAKT 39 (273)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 4888888999999999999999998887654
No 321
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=60.84 E-value=43 Score=21.69 Aligned_cols=50 Identities=24% Similarity=0.200 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHH-HcCCcEEEEeCC
Q 038938 14 ACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIAS-SRGYKIIVKMPN 65 (194)
Q Consensus 14 a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~-~~Gl~~~iv~p~ 65 (194)
..+++...+.++.+ .| .++++|..+|.-+|+|-..+++ ..|.+.+-|.-+
T Consensus 23 V~~qI~yvk~~~~~-~G-pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 23 VENQIEYVKSQGKI-NG-PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHC----TS--SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHHhcCCC-CC-CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 35677777777665 45 3347899989889998544444 455555555443
No 322
>PRK08251 short chain dehydrogenase; Provisional
Probab=60.70 E-value=52 Score=25.24 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=24.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|..-.+.|.+++++..
T Consensus 5 vlItGas~giG~~la~~l~~~g~~v~~~~r 34 (248)
T PRK08251 5 ILITGASSGLGAGMAREFAAKGRDLALCAR 34 (248)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 488889999999999988889987666654
No 323
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=60.68 E-value=58 Score=28.95 Aligned_cols=85 Identities=22% Similarity=0.185 Sum_probs=53.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh------------hhcCCeEecCCCCCC-----CchHHHHHcC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM------------SKIPNAYLLQQHENP-----ANPKIWKDSG 98 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~------------~~~~~~~~~~~~~~~-----~~~~i~~q~~ 98 (194)
+..-.-|+-|..+|..++.+|++++.+-|.. +.++.. ..+.+...++--.++ .+...++++
T Consensus 143 vgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~m- 220 (526)
T PRK13581 143 LGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKM- 220 (526)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcC-
Confidence 8888999999999999999999998887643 222211 112222222211111 111144555
Q ss_pred CCCCEEEEecCCchhHH--HHHHHHHh
Q 038938 99 GKFDALVAGIRTGGTIT--GAEKFLKE 123 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~--Gi~~~l~~ 123 (194)
+++++++=++-|+.+- .+..+|++
T Consensus 221 -k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 221 -KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred -CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 5899999999999964 55556653
No 324
>PRK09135 pteridine reductase; Provisional
Probab=60.68 E-value=64 Score=24.60 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=27.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
.+|+..+|.-|..++..-.+.|.+++++....
T Consensus 9 vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 9 ALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 48999999999999999999999988887543
No 325
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=60.58 E-value=92 Score=25.40 Aligned_cols=97 Identities=23% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCCCCCEE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGGKFDAL 104 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~d~v 104 (194)
.++.+ .+|...+|-.|.+++..|+.+|.+.+.+.. . ++.. .+.-|. ..++ +.++.... +.+..++.+|.|
T Consensus 153 ~~~~~--vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~-~---~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~d~v 225 (339)
T cd08249 153 SKGKP--VLIWGGSSSVGTLAIQLAKLAGYKVITTAS-P---KNFDLVKSLGADAVFD-YHDPDVVEDIRAATGGKLRYA 225 (339)
T ss_pred CCCCE--EEEEcChhHHHHHHHHHHHHcCCeEEEEEC-c---ccHHHHHhcCCCEEEE-CCCchHHHHHHHhcCCCeeEE
Confidence 45544 456666799999999999999998766552 1 2222 222332 1222 12222222 444445568999
Q ss_pred EEecCCchhHHHHHHHHHhhCC--CceEEEEe
Q 038938 105 VAGIRTGGTITGAEKFLKEKNL--EMKVYGIE 134 (194)
Q Consensus 105 v~~vG~GGt~~Gi~~~l~~~~~--~~~vigve 134 (194)
+-++|+...+. ..++...+ .-+++.+-
T Consensus 226 l~~~g~~~~~~---~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 226 LDCISTPESAQ---LCAEALGRSGGGKLVSLL 254 (339)
T ss_pred EEeeccchHHH---HHHHHHhccCCCEEEEec
Confidence 98888634333 33444445 55666553
No 326
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=60.53 E-value=31 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=33.0
Q ss_pred HHcCCCCCCCccceEEEeCC---ChHHHHHHHHHHHcCCcEEEEeCCCC
Q 038938 22 EDKGSISPGKQYNVLVEITS---ANAGIGLASIASSRGYKIIVKMPNTY 67 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSs---GN~g~a~A~~a~~~Gl~~~iv~p~~~ 67 (194)
+..|.+ +|.+ |+.... +|...+++.+++++|+..+++.|+..
T Consensus 149 e~~G~l-~g~k---v~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~ 193 (305)
T PRK00856 149 EEFGRL-EGLK---VAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTL 193 (305)
T ss_pred HHhCCC-CCCE---EEEECCCCCCcHHHHHHHHHHHcCCEEEEECCccc
Confidence 345654 4545 766666 58999999999999999999999765
No 327
>PRK08339 short chain dehydrogenase; Provisional
Probab=60.33 E-value=41 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|....+.|.+++++-.
T Consensus 11 ~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 11 AFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 488888899999999999999998777644
No 328
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=60.30 E-value=42 Score=26.05 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|......|.+++++-.
T Consensus 11 vlVtGas~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 11 VVVTGAAQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 489999999999999999999998877654
No 329
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=60.20 E-value=63 Score=28.74 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=52.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-------------hhcCCeEecCCCCCC-----CchHHHHHc
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------------SKIPNAYLLQQHENP-----ANPKIWKDS 97 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------------~~~~~~~~~~~~~~~-----~~~~i~~q~ 97 (194)
+..-.-|+.|.++|..++.+|++++.+-|.. +.++.. ....+...++--.++ .+...++++
T Consensus 141 vgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~m 219 (525)
T TIGR01327 141 LGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKM 219 (525)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcC
Confidence 8888999999999999999999998887642 222111 111222222111111 111144444
Q ss_pred CCCCCEEEEecCCchhHH--HHHHHHHh
Q 038938 98 GGKFDALVAGIRTGGTIT--GAEKFLKE 123 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~--Gi~~~l~~ 123 (194)
+++++++=++.|+.+- .+..+|++
T Consensus 220 --k~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 220 --KKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred --CCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 5899999999999964 55566654
No 330
>PRK06720 hypothetical protein; Provisional
Probab=60.19 E-value=66 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=23.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..++--|.++|....+.|.+++++-.
T Consensus 19 ~lVTGa~~GIG~aia~~l~~~G~~V~l~~r 48 (169)
T PRK06720 19 AIVTGGGIGIGRNTALLLAKQGAKVIVTDI 48 (169)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 377777788899999988899988766654
No 331
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=60.10 E-value=1e+02 Score=25.85 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=83.6
Q ss_pred HHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCC-eEecCCCCCCCchHHHHHc
Q 038938 20 DAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPN-AYLLQQHENPANPKIWKDS 97 (194)
Q Consensus 20 ~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~-~~~~~~~~~~~~~~i~~q~ 97 (194)
.+++...++||+. |....-|-.|.....+|+.+|.+++.+.. +.+|.+ +++-| -++++.- ++. ..+..
T Consensus 157 ~alk~~~~~pG~~---V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~~-~~~---~~~~~ 226 (339)
T COG1064 157 RALKKANVKPGKW---VAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINSS-DSD---ALEAV 226 (339)
T ss_pred eehhhcCCCCCCE---EEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEcC-Cch---hhHHh
Confidence 4555556778877 88888888888888899999988777764 334443 33332 2333322 332 22333
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEec-CCcccccCC--CCccccccccCCCCCc---ccc---ccccC
Q 038938 98 GGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIES-VESAVLNGG--KPGLHLIQGIGIGIIP---TVL---DIKML 168 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~-~~~~~~~~~--~~~~~~~~g~~~~~~~---~~~---~~~~v 168 (194)
.+.+|.++..++ .-++.=....++. .-..-++|.-+ ..-+.+.-. ......+.|--.+... ..+ ....+
T Consensus 227 ~~~~d~ii~tv~-~~~~~~~l~~l~~-~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~I 304 (339)
T COG1064 227 KEIADAIIDTVG-PATLEPSLKALRR-GGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKI 304 (339)
T ss_pred HhhCcEEEECCC-hhhHHHHHHHHhc-CCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCc
Confidence 334899999999 6666444344332 22344555553 111111110 1112223332222111 111 13345
Q ss_pred CcEE--EeCCHHHHHHHHHHHHH
Q 038938 169 DEVK--TVLLCHVVTETTKRLAL 189 (194)
Q Consensus 169 d~~~--~V~d~~e~~~a~~~la~ 189 (194)
...+ .++= +|+-+|..+|-+
T Consensus 305 kp~i~e~~~l-~~in~A~~~m~~ 326 (339)
T COG1064 305 KPEILETIPL-DEINEAYERMEK 326 (339)
T ss_pred eeeEEeeECH-HHHHHHHHHHHc
Confidence 5555 5666 888888888754
No 332
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=60.10 E-value=35 Score=28.16 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=32.2
Q ss_pred HcCCCCCCCccceEEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCCCH
Q 038938 23 DKGSISPGKQYNVLVEITS-ANAGIGLASIASSRGYKIIVKMPNTYSI 69 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSs-GN~g~a~A~~a~~~Gl~~~iv~p~~~~~ 69 (194)
..|.+ +|.+ ++.... .|.+.++-.+|+++|++++|..|+..-+
T Consensus 147 ~~g~l-~g~k---~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p 190 (310)
T COG0078 147 HFGSL-KGLK---LAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEP 190 (310)
T ss_pred hcCcc-cCcE---EEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCc
Confidence 34433 4545 555544 5689999999999999999999998754
No 333
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=59.88 E-value=15 Score=27.52 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=27.0
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 98 GGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
+-.||.|+.=.|=|-++ .||+.+|++++++-.
T Consensus 64 Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEE
Confidence 44699999988887775 899999999999854
No 334
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.76 E-value=64 Score=25.33 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=40.4
Q ss_pred eEEEeC--CChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhc-CCe-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEIT--SANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKI-PNA-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aS--sGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~-~~~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+.. ++--|.++|....+.|.++++.-......++.. .++ ... ++.-...++.... +.+++ +++|.
T Consensus 9 vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~ 87 (260)
T PRK06997 9 ILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW-DGLDG 87 (260)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh-CCCcE
Confidence 366663 456788888888889999877532211122221 111 111 1111222222222 34444 47999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 88 lvnnAG~~ 95 (260)
T PRK06997 88 LVHSIGFA 95 (260)
T ss_pred EEEccccC
Confidence 99998875
No 335
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=59.74 E-value=38 Score=28.83 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=58.9
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHH------Hh--hhcCCeEecC-CCCCC-----
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR------RM--SKIPNAYLLQ-QHENP----- 88 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k------~~--~~~~~~~~~~-~~~~~----- 88 (194)
+.|..-.|.+ |-.-.-||-|..+|..++.+|+++.++-|....... .+ ..+-+...++ +.+..
T Consensus 109 ~~g~~L~gkt---vGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T 185 (378)
T PRK15438 109 RDGFSLHDRT---VGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKT 185 (378)
T ss_pred cCCCCcCCCE---EEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence 3343335656 888899999999999999999999998764321110 00 1222333222 22221
Q ss_pred ---CchHHHHHcCCCCCEEEEecCCchhHH--HHHHHHHh
Q 038938 89 ---ANPKIWKDSGGKFDALVAGIRTGGTIT--GAEKFLKE 123 (194)
Q Consensus 89 ---~~~~i~~q~~~~~d~vv~~vG~GGt~~--Gi~~~l~~ 123 (194)
.+...++++ +++.+++=+|-|+.+- .+..+|++
T Consensus 186 ~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 186 LHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred ccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 112245555 5899999999999964 45555553
No 336
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.67 E-value=57 Score=25.86 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=40.6
Q ss_pred eEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCCeEecCC--CCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITS--ANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPNAYLLQQ--HENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~~~~~~~--~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+ +.-|.++|...++.|.++++.-......++.+ .++-+.....+ ..++.... +.++. +++|.
T Consensus 13 ~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~iD~ 91 (272)
T PRK08159 13 GLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW-GKLDF 91 (272)
T ss_pred EEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc-CCCcE
Confidence 3666654 67899999999999998766532211112221 22212111112 22222222 33334 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 92 lv~nAG~~ 99 (272)
T PRK08159 92 VVHAIGFS 99 (272)
T ss_pred EEECCccc
Confidence 99999865
No 337
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=59.61 E-value=55 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=25.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|+-|.++|..-.+.|.+++++...
T Consensus 15 vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 15 ILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 4899999999999999888899987766543
No 338
>PRK14031 glutamate dehydrogenase; Provisional
Probab=59.28 E-value=58 Score=28.40 Aligned_cols=52 Identities=15% Similarity=0.028 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHc-CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 10 PSRIACSMIKDAEDK-GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 10 K~R~a~~~~~~a~~~-g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
--||.+..+..+.+. |.--+|.+ |+....||-|..+|.....+|.+++++.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~r---VaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKV---CLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 347777777776654 33235656 99999999999999999999999998766
No 339
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=59.20 E-value=92 Score=24.99 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=53.6
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcC-CC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSG-GK 100 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~-~~ 100 (194)
...+.++.+ .++ -.+|..|.+++..|+.+|.+++++.+. .++.. ....+. ..++ ..+......++... ..
T Consensus 160 ~~~~~~~~~--vli-~g~g~vG~~~~~la~~~G~~V~~~~~s---~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 160 AGEVKPGET--VLV-IGLGGLGLNAVQIAKAMGAAVIAVDIK---EEKLELAKELGADEVLN-SLDDSPKDKKAAGLGGG 232 (338)
T ss_pred ccCCCCCCE--EEE-ECCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHhCCCEEEc-CCCcCHHHHHHHhcCCC
Confidence 344556655 355 456889999999999999985554432 22222 211121 1222 12222222123333 35
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.|+.++|.+.++.-+. +.+.+.-+++.+
T Consensus 233 ~D~vid~~g~~~~~~~~~---~~l~~~G~~v~~ 262 (338)
T cd08254 233 FDVIFDFVGTQPTFEDAQ---KAVKPGGRIVVV 262 (338)
T ss_pred ceEEEECCCCHHHHHHHH---HHhhcCCEEEEE
Confidence 899999988765444333 334455566554
No 340
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=59.13 E-value=29 Score=27.13 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=55.5
Q ss_pred HHHcCCCCCCCccceEEEe-CCC---hHHHHHHHHHHHcCCcEEEEeCCCCCHH--HHhhhcCCeEecCCCCCCCchH-H
Q 038938 21 AEDKGSISPGKQYNVLVEI-TSA---NAGIGLASIASSRGYKIIVKMPNTYSIQ--RRMSKIPNAYLLQQHENPANPK-I 93 (194)
Q Consensus 21 a~~~g~~~~g~~~~~vv~a-SsG---N~g~a~A~~a~~~Gl~~~iv~p~~~~~~--k~~~~~~~~~~~~~~~~~~~~~-i 93 (194)
|+..|... +. +|++ |.| -+-+|||.+|++-|=+.+.++|+..... +..-...+..-.-+|--...++ +
T Consensus 35 AlAAG~nA--kl---iVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~ 109 (218)
T PF07279_consen 35 ALAAGWNA--KL---IVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEV 109 (218)
T ss_pred HHhccccc--eE---EEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHH
Confidence 56666532 22 5555 555 3689999999999999999999865432 1111111111000110011122 5
Q ss_pred HHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCCceE
Q 038938 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKV 130 (194)
Q Consensus 94 ~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~v 130 (194)
+.++. .+|.+++=+---....-+.+.++ .+|+--|
T Consensus 110 ~~~~~-~iDF~vVDc~~~d~~~~vl~~~~-~~~~GaV 144 (218)
T PF07279_consen 110 MPGLK-GIDFVVVDCKREDFAARVLRAAK-LSPRGAV 144 (218)
T ss_pred Hhhcc-CCCEEEEeCCchhHHHHHHHHhc-cCCCceE
Confidence 56664 68988887765544445555443 3444333
No 341
>PRK06487 glycerate dehydrogenase; Provisional
Probab=59.12 E-value=55 Score=26.98 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=54.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-------HHHhhhcCCeEecCC-C----CCCCchHHHHHcCCCCCE
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSI-------QRRMSKIPNAYLLQQ-H----ENPANPKIWKDSGGKFDA 103 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~-------~k~~~~~~~~~~~~~-~----~~~~~~~i~~q~~~~~d~ 103 (194)
|-.-.-|+-|+.+|..++.+|++++.+-+...+. +.. ..+.+...++- . .+..+.+.++++ ++++
T Consensus 151 vgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~el-l~~sDiv~l~lPlt~~T~~li~~~~~~~m--k~ga 227 (317)
T PRK06487 151 LGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDEL-LPQVDALTLHCPLTEHTRHLIGARELALM--KPGA 227 (317)
T ss_pred EEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHH-HHhCCEEEECCCCChHHhcCcCHHHHhcC--CCCe
Confidence 8888999999999999999999988876532110 111 22233333221 1 111222255666 5899
Q ss_pred EEEecCCchhH--HHHHHHHHh
Q 038938 104 LVAGIRTGGTI--TGAEKFLKE 123 (194)
Q Consensus 104 vv~~vG~GGt~--~Gi~~~l~~ 123 (194)
+++=+|-|+.+ ..+..+|++
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRS 249 (317)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 99999999996 466667763
No 342
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=58.78 E-value=93 Score=24.90 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=49.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~G 111 (194)
.+|...+|..|.+++..|+.+|.++++..... ++.+ ....+. .+++ ..++ ... +.+..+..+|.|+-++|+
T Consensus 150 vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~v~~-~~~~-~~~~~~~~~~~~~d~vld~~g~- 223 (326)
T cd08289 150 VLVTGATGGVGSLAVSILAKLGYEVVASTGKA---DAADYLKKLGAKEVIP-REEL-QEESIKPLEKQRWAGAVDPVGG- 223 (326)
T ss_pred EEEEcCCchHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHHcCCCEEEc-chhH-HHHHHHhhccCCcCEEEECCcH-
Confidence 45666679999999999999999865554332 2222 222221 1222 1222 122 222223358999988875
Q ss_pred hhHHHHHHHHHhhCCCceEEEE
Q 038938 112 GTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 112 Gt~~Gi~~~l~~~~~~~~vigv 133 (194)
.. +...++...+.-+++-+
T Consensus 224 ~~---~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 224 KT---LAYLLSTLQYGGSVAVS 242 (326)
T ss_pred HH---HHHHHHHhhcCCEEEEE
Confidence 22 33445544555555554
No 343
>PRK07069 short chain dehydrogenase; Validated
Probab=58.68 E-value=70 Score=24.49 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=26.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|..+|..-.+.|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3788889999999999999999988777654
No 344
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=58.61 E-value=81 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-.+.|.+.++..
T Consensus 6 ~lVtG~s~giG~~~a~~l~~~G~~vv~~~ 34 (246)
T PRK12938 6 AYVTGGMGGIGTSICQRLHKDGFKVVAGC 34 (246)
T ss_pred EEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 48899999999999999999999876654
No 345
>PRK07831 short chain dehydrogenase; Provisional
Probab=58.60 E-value=59 Score=25.30 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.5
Q ss_pred eEEEeCCC-hHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSA-NAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsG-N~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+| .-|.++|......|.+++++-
T Consensus 20 vlItG~sg~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 20 VLVTAAAGTGIGSATARRALEEGARVVISD 49 (262)
T ss_pred EEEECCCcccHHHHHHHHHHHcCCEEEEEe
Confidence 47777666 699999999999999865543
No 346
>PRK07574 formate dehydrogenase; Provisional
Probab=58.47 E-value=95 Score=26.52 Aligned_cols=83 Identities=8% Similarity=0.129 Sum_probs=52.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-------------hhcCCeEecCCCCCCCchH--------HH
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-------------SKIPNAYLLQQHENPANPK--------IW 94 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-------------~~~~~~~~~~~~~~~~~~~--------i~ 94 (194)
|-.-.-|+-|+.+|..++.+|++++.+-+...+.+... ....+...++ -|...+ .+
T Consensus 195 VGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~---lPlt~~T~~li~~~~l 271 (385)
T PRK07574 195 VGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIH---CPLHPETEHLFDADVL 271 (385)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEc---CCCCHHHHHHhCHHHH
Confidence 88889999999999999999999988876542222110 1111222111 111111 34
Q ss_pred HHcCCCCCEEEEecCCchhHH--HHHHHHHh
Q 038938 95 KDSGGKFDALVAGIRTGGTIT--GAEKFLKE 123 (194)
Q Consensus 95 ~q~~~~~d~vv~~vG~GGt~~--Gi~~~l~~ 123 (194)
.++ +++.+++=++.|+.+- .+..+|++
T Consensus 272 ~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 272 SRM--KRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred hcC--CCCcEEEECCCCchhhHHHHHHHHHh
Confidence 444 5789999999999863 55555553
No 347
>PRK12367 short chain dehydrogenase; Provisional
Probab=58.40 E-value=73 Score=24.95 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=43.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcCCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~G 111 (194)
.+|+..||--|.++|..-.+.|.+++++............+....++ +.+ ..+.. +.+++ +++|.+|..+|.+
T Consensus 17 ~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~D-~~~~~~~~~~~-~~iDilVnnAG~~ 90 (245)
T PRK12367 17 IGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWI--KWE-CGKEESLDKQL-ASLDVLILNHGIN 90 (245)
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEE--Eee-CCCHHHHHHhc-CCCCEEEECCccC
Confidence 48888999999999999999999887765543111111111111111 111 11122 33444 3799999999864
No 348
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.08 E-value=11 Score=32.95 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 40 TSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 40 SsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|||-+|.++|.+++..|.+++++.-
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~G 304 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISG 304 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeC
Confidence 9999999999999999999999973
No 349
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.03 E-value=65 Score=27.60 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=44.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCCeEecCCCCCCCchH-HHHHc---CCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPNAYLLQQHENPANPK-IWKDS---GGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~~~~~~~~~~~~~~~-i~~q~---~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|....+.|.+++++-.... .++.. .+....++.-...++.... ++++. .+.+|.||..
T Consensus 213 vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~-~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~vi~~ 291 (450)
T PRK08261 213 ALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA-GEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIVVHN 291 (450)
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc-HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 578888899999999999999999777654322 22211 1212222221122222222 33332 2369999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 292 AG~~ 295 (450)
T PRK08261 292 AGIT 295 (450)
T ss_pred CCcC
Confidence 8854
No 350
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=58.02 E-value=1.1e+02 Score=25.43 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=50.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eEecCCCCCCCchH----HHHHcCCCCCEEEEecCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AYLLQQHENPANPK----IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~~~~~~~~~~~~~----i~~q~~~~~d~vv~~vG~ 110 (194)
+..-.+|++|.++|...++.| +.+++.......+.++....+ .++...+.-+.+.. +.+.+ ...|.||+++=+
T Consensus 10 I~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~-~~aDlVilavps 87 (341)
T PRK12439 10 VVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA-NCADVVVMGVPS 87 (341)
T ss_pred EEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH-hcCCEEEEEeCH
Confidence 888899999999999999999 676666432111122111111 11211111111111 22222 257999999887
Q ss_pred chhHHHHHHHHHh-hCCCceEEEEe
Q 038938 111 GGTITGAEKFLKE-KNLEMKVYGIE 134 (194)
Q Consensus 111 GGt~~Gi~~~l~~-~~~~~~vigve 134 (194)
-.+-. +..-++. ..+++.++.++
T Consensus 88 ~~~~~-vl~~i~~~l~~~~~vIsl~ 111 (341)
T PRK12439 88 HGFRG-VLTELAKELRPWVPVVSLV 111 (341)
T ss_pred HHHHH-HHHHHHhhcCCCCEEEEEE
Confidence 66543 3344443 34555566443
No 351
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=57.98 E-value=99 Score=24.97 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=52.4
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASS-RGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSG 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~-~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~ 98 (194)
+...+.+|.+ .+|.. +|-.|.+++..|+. +|.+.+++.+.. ++.+ .+.-+. .+++...++.... +.+..+
T Consensus 156 ~~~~~~~g~~--vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~---~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~ 229 (338)
T PRK09422 156 KVSGIKPGQW--IAIYG-AGGLGNLALQYAKNVFNAKVIAVDIND---DKLALAKEVGADLTINSKRVEDVAKIIQEKTG 229 (338)
T ss_pred HhcCCCCCCE--EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCh---HHHHHHHHcCCcEEecccccccHHHHHHHhcC
Confidence 3345667765 35555 78999999999997 599866654432 2322 222221 2222111122122 433344
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.+|.++.+.+++.++......+ .+.-+++-+
T Consensus 230 -~~d~vi~~~~~~~~~~~~~~~l---~~~G~~v~~ 260 (338)
T PRK09422 230 -GAHAAVVTAVAKAAFNQAVDAV---RAGGRVVAV 260 (338)
T ss_pred -CCcEEEEeCCCHHHHHHHHHhc---cCCCEEEEE
Confidence 5787777777665554444433 344444433
No 352
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=57.94 E-value=76 Score=24.13 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
.+|+..+|.-|.+++..-.+.|..+++.
T Consensus 9 vlItGa~g~iG~~la~~l~~~g~~v~~~ 36 (245)
T PRK12936 9 ALVTGASGGIGEEIARLLHAQGAIVGLH 36 (245)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 4888889999999999998999865444
No 353
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=57.81 E-value=58 Score=27.96 Aligned_cols=31 Identities=3% Similarity=0.155 Sum_probs=27.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
|...-+|-+++.++.+|+++|++++++.+..
T Consensus 5 ililg~g~~~~~~~~~a~~lG~~~v~~~~~~ 35 (450)
T PRK06111 5 VLIANRGEIAVRIIRTCQKLGIRTVAIYSEA 35 (450)
T ss_pred EEEECCcHHHHHHHHHHHHcCCeEEEEechh
Confidence 7888899999999999999999999987643
No 354
>PRK06197 short chain dehydrogenase; Provisional
Probab=57.56 E-value=49 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=24.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|.++|..-.+.|.+++++...
T Consensus 19 vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 19 AVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888888888888888889987776653
No 355
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=57.43 E-value=90 Score=31.10 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCCCC----CccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 15 CSMIKDAEDKGSISPG----KQYNVLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 15 ~~~~~~a~~~g~~~~g----~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
..+|.+|.++|++.|- .+.++|..-.||-.|++.|..-.+.|.-++||-..
T Consensus 1763 ~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~ 1817 (2142)
T KOG0399|consen 1763 CAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERS 1817 (2142)
T ss_pred hHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEec
Confidence 4678899999987542 12234999999999999999999999999998543
No 356
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=57.06 E-value=18 Score=31.11 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=24.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
||...+|-.|.+.|.+|++.|+++.++=+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7888899999999999999999999986544
No 357
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=57.04 E-value=19 Score=30.45 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=24.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
|+.-.+|..|++.|..|+..|.+++|+-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 6777899999999999999999888875443
No 358
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=57.03 E-value=16 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
++...+|.-+.+++..++.+|++++++-|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4567789999999999999999999998873
No 359
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.86 E-value=87 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=28.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
+|..-.+|.+|.++|+.++..|++++++-...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 48888999999999999999999999987653
No 360
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=56.76 E-value=65 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=25.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|..-...|.+++++..
T Consensus 14 vlVtG~s~gIG~~la~~l~~~G~~vv~~~r 43 (255)
T PRK06113 14 AIITGAGAGIGKEIAITFATAGASVVVSDI 43 (255)
T ss_pred EEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 488889999999999988899998777654
No 361
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=56.66 E-value=29 Score=29.61 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 40 TSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 40 SsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|||-.|.++|..+...|.+++++...
T Consensus 209 SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 209 SSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 56889999999999999999887743
No 362
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.59 E-value=92 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=26.8
Q ss_pred EEEeCCChHHHHHHHHHHHcC-------CcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRG-------YKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~G-------l~~~iv~p~~ 66 (194)
|..-.+|++|.|+|...+.-| .++.++..+.
T Consensus 14 i~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 14 VSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred EEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 888899999999999999877 6888887664
No 363
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=56.42 E-value=90 Score=25.86 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=51.5
Q ss_pred EEEeCCChHHHHHHHHHH-HcCCcEEEEeCCCCCHH-HH-h---------hhcCCeEecCCCCCC-----CchHHHHHcC
Q 038938 36 LVEITSANAGIGLASIAS-SRGYKIIVKMPNTYSIQ-RR-M---------SKIPNAYLLQQHENP-----ANPKIWKDSG 98 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~-~~Gl~~~iv~p~~~~~~-k~-~---------~~~~~~~~~~~~~~~-----~~~~i~~q~~ 98 (194)
+-.-.-|+-|+.+|-.++ -+|+++..+-|...+.. .. . .++.+...++--.++ .+.+.++++
T Consensus 148 vGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~m- 226 (323)
T PRK15409 148 LGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKM- 226 (323)
T ss_pred EEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcC-
Confidence 888889999999999997 89999877655421111 00 0 122232222211111 111145555
Q ss_pred CCCCEEEEecCCchhH--HHHHHHHH
Q 038938 99 GKFDALVAGIRTGGTI--TGAEKFLK 122 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~--~Gi~~~l~ 122 (194)
+++++++=++-|+.+ ..+..+|+
T Consensus 227 -k~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 227 -KSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred -CCCeEEEECCCccccCHHHHHHHHH
Confidence 589999999999985 45666665
No 364
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=56.36 E-value=1.1e+02 Score=24.90 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC-C
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRG-YKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG-K 100 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~G-l~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~-~ 100 (194)
.+.+|.+ .+|. .+|..|.+++..|+.+| .++++ +.. +..+.. ...-+. .+++ +....... +.+.+++ .
T Consensus 163 ~~~~g~~--vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~~--~~~~~~~~~~~g~~~~v~-~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 163 KVKPGDT--VAIV-GAGPVGLAALLTAQLYSPSKIIM-VDL--DDNRLEVAKKLGATHTVN-SAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCCeEEE-EcC--CHHHHHHHHHhCCCceec-cccccHHHHHHHHhCCCC
Confidence 4556655 4554 56999999999999999 45444 432 233332 222221 1222 12222111 4444443 5
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.|+-++|...++ -..++.+.++-+++-+
T Consensus 236 ~d~vld~~g~~~~~---~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAVGIPATF---ELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECCCCHHHH---HHHHHhccCCcEEEEe
Confidence 89999998765543 2233444455555543
No 365
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.18 E-value=78 Score=24.82 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=41.1
Q ss_pred eEEEe--CCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCC--eEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEI--TSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPN--AYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~a--SsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~--~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+. +++.-|.++|..-.+.|.++++.-......++.. ..+.+ ..+.-...++.... +.++. +++|.
T Consensus 9 ~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD~ 87 (261)
T PRK08690 9 ILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW-DGLDG 87 (261)
T ss_pred EEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh-CCCcE
Confidence 36666 3567889999888899998877532211111111 11112 11211222222222 44444 37999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|.+
T Consensus 88 lVnnAG~~ 95 (261)
T PRK08690 88 LVHSIGFA 95 (261)
T ss_pred EEECCccC
Confidence 99999875
No 366
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.14 E-value=93 Score=24.29 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=40.4
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhc-CC-eEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 36 LVEITS--ANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKI-PN-AYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 36 vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~-~~-~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
+|+..+ +.-|.++|..-++.|.+++++-......++.. .++ .. .++.-...++.... +.++. +++|.+
T Consensus 14 lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~ld~l 92 (258)
T PRK07533 14 LVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW-GRLDFL 92 (258)
T ss_pred EEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 566544 47899999999999998777644321111111 111 11 11211122222222 33444 479999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 93 v~nAg~~ 99 (258)
T PRK07533 93 LHSIAFA 99 (258)
T ss_pred EEcCccC
Confidence 9998864
No 367
>CHL00194 ycf39 Ycf39; Provisional
Probab=56.04 E-value=61 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=27.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|.-|..++......|.+++++...
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4889999999999999999999998888764
No 368
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=55.78 E-value=1.1e+02 Score=24.75 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=52.2
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC-CC
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRG-YKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG-KF 101 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~G-l~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~-~~ 101 (194)
+.++++ .+|.. +|..|.+++..|+.+| .+++++... .++.. .+.-+. ..++ +++. ... +.+..++ .+
T Consensus 165 ~~~~~~--vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~---~~~~~~~~~~g~~~~~~-~~~~-~~~~i~~~~~~~~~ 236 (340)
T cd05284 165 LDPGST--VVVIG-VGGLGHIAVQILRALTPATVIAVDRS---EEALKLAERLGADHVLN-ASDD-VVEEVRELTGGRGA 236 (340)
T ss_pred CCCCCE--EEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCC---HHHHHHHHHhCCcEEEc-CCcc-HHHHHHHHhCCCCC
Confidence 445554 35555 6679999999999999 776655432 22222 222221 1222 2222 222 4333433 58
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|.|+-++|+...+.-. ++.+.+.-+++-+
T Consensus 237 dvvld~~g~~~~~~~~---~~~l~~~g~~i~~ 265 (340)
T cd05284 237 DAVIDFVGSDETLALA---AKLLAKGGRYVIV 265 (340)
T ss_pred CEEEEcCCCHHHHHHH---HHHhhcCCEEEEE
Confidence 9999998865544333 3334455556544
No 369
>PRK07791 short chain dehydrogenase; Provisional
Probab=55.62 E-value=1e+02 Score=24.51 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..++.-|.++|...++.|.+++++.
T Consensus 9 ~lITGas~GIG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 9 VIVTGAGGGIGRAHALAFAAEGARVVVND 37 (286)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEee
Confidence 48888888899999999999999877764
No 370
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.51 E-value=87 Score=25.56 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=49.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-eEecCCCCCCCchH-------HHHHcCCCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-AYLLQQHENPANPK-------IWKDSGGKFD 102 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~~~~~~~~~~~~~~-------i~~q~~~~~d 102 (194)
++|+..|.--|.++|+.=++.|++.+++....-..++.. +..+. ..++-++|-..... +..+++ .+|
T Consensus 15 VvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg-~vD 93 (282)
T KOG1205|consen 15 VLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG-RVD 93 (282)
T ss_pred EEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC-CCC
Confidence 478888888999999999999999999887654444442 11111 13333333222111 445554 799
Q ss_pred EEEEecCCch
Q 038938 103 ALVAGIRTGG 112 (194)
Q Consensus 103 ~vv~~vG~GG 112 (194)
++|.=+|-+-
T Consensus 94 vLVNNAG~~~ 103 (282)
T KOG1205|consen 94 VLVNNAGISL 103 (282)
T ss_pred EEEecCcccc
Confidence 9999877654
No 371
>PRK06932 glycerate dehydrogenase; Provisional
Probab=55.40 E-value=64 Score=26.60 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=53.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHH-----Hh--hhcCCeEecC-CC----CCCCchHHHHHcCCCCCE
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR-----RM--SKIPNAYLLQ-QH----ENPANPKIWKDSGGKFDA 103 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k-----~~--~~~~~~~~~~-~~----~~~~~~~i~~q~~~~~d~ 103 (194)
|..-.-|+-|+.+|..++.+|++++.+-+....... .+ ..+.+...++ +. .+..+.+.++++ ++++
T Consensus 150 vgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~m--k~ga 227 (314)
T PRK06932 150 LGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALM--KPTA 227 (314)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhC--CCCe
Confidence 888899999999999999999998776432211100 00 1223333322 11 111122256666 5899
Q ss_pred EEEecCCchhH--HHHHHHHHh
Q 038938 104 LVAGIRTGGTI--TGAEKFLKE 123 (194)
Q Consensus 104 vv~~vG~GGt~--~Gi~~~l~~ 123 (194)
+++=+|-|+.+ ..+..+|++
T Consensus 228 ~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 228 FLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 99999999995 466666663
No 372
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=55.33 E-value=78 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=27.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
.+|+..+|.-|..++......|.+++++....
T Consensus 63 VLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 63 VLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 68999999999999999988999988887543
No 373
>PRK06202 hypothetical protein; Provisional
Probab=55.31 E-value=19 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.0
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCc
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVES 138 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~ 138 (194)
...+=+++|+|....-++..++...++.+|+|+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 34667789999877667666666677889999999764
No 374
>PRK07985 oxidoreductase; Provisional
Probab=55.30 E-value=76 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=25.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-.+.|.+++++-
T Consensus 52 vlITGas~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 52 ALVTGGDSGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred EEEECCCCcHHHHHHHHHHHCCCEEEEec
Confidence 58999999999999999999999987654
No 375
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=55.08 E-value=43 Score=27.64 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=33.3
Q ss_pred HHcCCCCCCCccceEEEeCC---ChHHHHHHHHHHHcCC-cEEEEeCCCC
Q 038938 22 EDKGSISPGKQYNVLVEITS---ANAGIGLASIASSRGY-KIIVKMPNTY 67 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSs---GN~g~a~A~~a~~~Gl-~~~iv~p~~~ 67 (194)
+..|.+ +|.+ |..... +|.+.++..+++++|+ +++++.|+..
T Consensus 150 e~~g~l-~g~~---va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~ 195 (310)
T PRK13814 150 QHKPHW-NKLC---VTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSL 195 (310)
T ss_pred HHhCCc-CCcE---EEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 345654 4545 777777 5899999999999999 8999999864
No 376
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=54.91 E-value=1.3e+02 Score=25.25 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=57.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcC-CeEecCCCCCCC-chH-HHHHcC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIP-NAYLLQQHENPA-NPK-IWKDSG 98 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~-~~~~~~~~~~~~-~~~-i~~q~~ 98 (194)
+...+.+|.+ |+...+|-.|.+++..|+.+|.+.++++..+ +++.+ .++. +...++ +.+.. ... +.+..+
T Consensus 178 ~~~~~~~g~~---VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~--~~~~~~~~~~~~~~vi~-~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 178 ELAEVKPGDT---VAVWGCGPVGLFAARSAKLLGAERVIAIDRV--PERLEMARSHLGAETIN-FEEVDDVVEALRELTG 251 (386)
T ss_pred hhccCCCCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHcCCcEEEc-CCcchHHHHHHHHHcC
Confidence 3445566755 5444678889999999999998644444332 23332 2222 222232 22221 111 333333
Q ss_pred C-CCCEEEEecCCch------------------hHHHHHHHHHhhCCCceEEEEe
Q 038938 99 G-KFDALVAGIRTGG------------------TITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 99 ~-~~d~vv~~vG~GG------------------t~~Gi~~~l~~~~~~~~vigve 134 (194)
+ .+|.|+-++|+.. ....+...++...+.-+++-+-
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 3 5999999987532 1223444555556666666654
No 377
>PRK06196 oxidoreductase; Provisional
Probab=54.79 E-value=57 Score=26.44 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=42.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-eEecCCCCCCCchH-HHHHc---CCCCCEEEEecC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-AYLLQQHENPANPK-IWKDS---GGKFDALVAGIR 109 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-i~~q~---~~~~d~vv~~vG 109 (194)
.+|+..+|.-|.++|..-.+.|.+++++............+... .++.-...++.... ++++. .+++|.||..+|
T Consensus 29 vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 29 AIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 58888888899999888888999877765431111111011111 12221223332222 23322 247999999988
Q ss_pred Cc
Q 038938 110 TG 111 (194)
Q Consensus 110 ~G 111 (194)
..
T Consensus 109 ~~ 110 (315)
T PRK06196 109 VM 110 (315)
T ss_pred CC
Confidence 54
No 378
>PRK12746 short chain dehydrogenase; Provisional
Probab=54.56 E-value=82 Score=24.23 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|--|.++|....+.|.++++...
T Consensus 9 ilItGasg~iG~~la~~l~~~G~~v~i~~~ 38 (254)
T PRK12746 9 ALVTGASRGIGRAIAMRLANDGALVAIHYG 38 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 489999999999999999999998776543
No 379
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=54.42 E-value=99 Score=25.89 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC----CCHHHHh----hhcCCeEecCCCCC
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNT----YSIQRRM----SKIPNAYLLQQHEN 87 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~----~~~~k~~----~~~~~~~~~~~~~~ 87 (194)
.+.||+. ++.-+.|-+|.-.|=.++++|.++.++ +.. ++.+.+. ...++.+++.+-+.
T Consensus 88 ~lePgd~---vLv~~~G~wg~ra~D~~~r~ga~V~~v-~~~~G~~~~le~i~~~lsqh~p~~vfv~hgds 153 (385)
T KOG2862|consen 88 LLEPGDN---VLVVSTGTWGQRAADCARRYGAEVDVV-EADIGQAVPLEEITEKLSQHKPKAVFVTHGDS 153 (385)
T ss_pred hcCCCCe---EEEEEechHHHHHHHHHHhhCceeeEE-ecCcccCccHHHHHHHHHhcCCceEEEEecCc
Confidence 4568877 999999999999899999999999988 332 2332222 33455666655444
No 380
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.37 E-value=91 Score=24.34 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=39.7
Q ss_pred eEEEeC--CChHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHhhhcC--CeEecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEIT--SANAGIGLASIASSRGYKIIVKMPNTYSI--QRRMSKIP--NAYLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aS--sGN~g~a~A~~a~~~Gl~~~iv~p~~~~~--~k~~~~~~--~~~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+.. |+--|.++|..-++.|.++++.-...... ++...+.. -.++.-...++.... +.++. +++|.
T Consensus 10 ~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~-g~iD~ 88 (256)
T PRK07889 10 ILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV-DGLDG 88 (256)
T ss_pred EEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc-CCCcE
Confidence 366665 56778888888888899876654322111 11111111 112211222222222 33344 47999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 89 li~nAG~~ 96 (256)
T PRK07889 89 VVHSIGFA 96 (256)
T ss_pred EEEccccc
Confidence 99998865
No 381
>PRK06484 short chain dehydrogenase; Validated
Probab=53.97 E-value=69 Score=27.93 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=43.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC-Ce-EecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP-NA-YLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~-~~-~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..++.-|.++|..-.+.|.+++++-......++...+.. .. ++.-...++.... +.++.+ ++|.+|..
T Consensus 8 ~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g-~iD~li~n 86 (520)
T PRK06484 8 VLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFG-RIDVLVNN 86 (520)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhC-CCCEEEEC
Confidence 5888888889999999999999987766432211111111111 11 1222233333222 344443 79999999
Q ss_pred cCC
Q 038938 108 IRT 110 (194)
Q Consensus 108 vG~ 110 (194)
+|.
T Consensus 87 ag~ 89 (520)
T PRK06484 87 AGV 89 (520)
T ss_pred CCc
Confidence 886
No 382
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=53.94 E-value=1.1e+02 Score=28.33 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=59.9
Q ss_pred eEEEeCCChHHHHHHHHHH-HcCCcEEEEeCCCCCHHHHh----------hhc------------CCeEecCCC---CCC
Q 038938 35 VLVEITSANAGIGLASIAS-SRGYKIIVKMPNTYSIQRRM----------SKI------------PNAYLLQQH---ENP 88 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~-~~Gl~~~iv~p~~~~~~k~~----------~~~------------~~~~~~~~~---~~~ 88 (194)
+|..-.+|..|.++|+.++ ..|++++++-+......+.. .+. ....+...+ .+-
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 390 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHA 390 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccC
Confidence 4777788999999999988 88999999876432211110 000 000111111 111
Q ss_pred -C-------chH----HHHHcCC--CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCc
Q 038938 89 -A-------NPK----IWKDSGG--KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVES 138 (194)
Q Consensus 89 -~-------~~~----i~~q~~~--~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~ 138 (194)
. +.+ ++.++.. +||.|++..-|+=.++-++..++. | -|++|+-....
T Consensus 391 DlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~--p-~r~ig~Hff~P 451 (708)
T PRK11154 391 DVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAAR--P-EQVIGLHYFSP 451 (708)
T ss_pred CEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCc--c-cceEEEecCCc
Confidence 1 111 5666643 689999988888788888777642 2 35666655543
No 383
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=53.82 E-value=1e+02 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred eEEEeCC--ChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITS--ANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+ +.-|.++|...++.|.++++..
T Consensus 9 ~lItGas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 9 ALVTGIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred EEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 3677654 5688888888889999987653
No 384
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=53.82 E-value=1.1e+02 Score=24.32 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=56.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG 99 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~ 99 (194)
+...+.++.. .+|...+|..|.+++..|+.+|.+.+.+.+.. ++.. ....+. .+++ +.++.... +.+..++
T Consensus 136 ~~~~~~~~~~--vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 209 (324)
T cd08244 136 DLATLTPGDV--VLVTAAAGGLGSLLVQLAKAAGATVVGAAGGP---AKTALVRALGADVAVD-YTRPDWPDQVREALGG 209 (324)
T ss_pred HhcCCCCCCE--EEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHcCCCEEEe-cCCccHHHHHHHHcCC
Confidence 3444556655 45666689999999999999999865554332 2221 222221 2222 22222222 4444543
Q ss_pred -CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 100 -KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 100 -~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.+|.|+-++|+-.. ...++...+.-+++-+.
T Consensus 210 ~~~d~vl~~~g~~~~----~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 210 GGVTVVLDGVGGAIG----RAALALLAPGGRFLTYG 241 (324)
T ss_pred CCceEEEECCChHhH----HHHHHHhccCcEEEEEe
Confidence 58999998875421 33455455555666553
No 385
>PRK12744 short chain dehydrogenase; Provisional
Probab=53.82 E-value=92 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.4
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-...|.+++++.
T Consensus 11 vlItGa~~gIG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 11 VLIAGGAKNLGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred EEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence 48888899999999988888999966664
No 386
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=53.63 E-value=98 Score=26.33 Aligned_cols=93 Identities=17% Similarity=0.110 Sum_probs=49.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCch-HHHHHcCCCCCEEEEecCCchhH
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANP-KIWKDSGGKFDALVAGIRTGGTI 114 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~-~i~~q~~~~~d~vv~~vG~GGt~ 114 (194)
|..-.+|+.+.++++++++.|+.+.+++....+.... .. ...++.-...+.... ++.+.. ++|.|+.... ..+.
T Consensus 3 iliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~d~~~l~~~~~~~--~id~vi~~~e-~~l~ 77 (423)
T TIGR00877 3 VLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTAR-LA-KNKNVAISITDIEALVEFAKKK--KIDLAVIGPE-APLV 77 (423)
T ss_pred EEEECCChHHHHHHHHHHhCCCccEEEEECCCHHHhh-hc-ccccccCCCCCHHHHHHHHHHh--CCCEEEECCc-hHHH
Confidence 5566778889999999999998888876654333221 11 111221111221111 133333 5888885322 3344
Q ss_pred HHHHHHHHhhCCCceEEEEec
Q 038938 115 TGAEKFLKEKNLEMKVYGIES 135 (194)
Q Consensus 115 ~Gi~~~l~~~~~~~~vigve~ 135 (194)
+++...+.+. .+++++-.+
T Consensus 78 ~~~~~~l~~~--gi~~~g~~~ 96 (423)
T TIGR00877 78 LGLVDALEEA--GIPVFGPTK 96 (423)
T ss_pred HHHHHHHHHC--CCeEECCCH
Confidence 5666666544 345555443
No 387
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=53.47 E-value=43 Score=28.81 Aligned_cols=50 Identities=16% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCC-CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 12 RIACSMIKDAEDKGSI-SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 12 R~a~~~~~~a~~~g~~-~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
+|.++.+..+++.-.. -+|.+ |+...+||-|.-+|......|.+++.+--
T Consensus 188 ~Gv~~~~~~a~~~~g~~l~G~r---VaVQG~GNVg~~aa~~l~~~GAkvva~sd 238 (411)
T COG0334 188 YGVFYAIREALKALGDDLEGAR---VAVQGFGNVGQYAAEKLHELGAKVVAVSD 238 (411)
T ss_pred eehHHHHHHHHHHcCCCcCCCE---EEEECccHHHHHHHHHHHHcCCEEEEEEc
Confidence 4556666655543222 36767 99999999999999999999999988743
No 388
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=53.39 E-value=1.2e+02 Score=24.43 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCCCCC
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGGKFD 102 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~~~d 102 (194)
..+.++.+ .+|. ..|..|.+++..|+.+|.+++++.+.. ++.+ ....+. .+++ +.+... ..+....+|
T Consensus 158 ~~~~~~~~--vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~~~~-~~~~~~---~~~~~~~~d 227 (330)
T cd08245 158 AGPRPGER--VAVL-GIGGLGHLAVQYARAMGFETVAITRSP---DKRELARKLGADEVVD-SGAELD---EQAAAGGAD 227 (330)
T ss_pred hCCCCCCE--EEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHhCCcEEec-cCCcch---HHhccCCCC
Confidence 34556655 3455 567799999999999999876665432 2222 111121 1111 111111 112333589
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 103 ALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
.++-++|++..+.- .++...+.-+++-+
T Consensus 228 ~vi~~~~~~~~~~~---~~~~l~~~G~~i~~ 255 (330)
T cd08245 228 VILVTVVSGAAAEA---ALGGLRRGGRIVLV 255 (330)
T ss_pred EEEECCCcHHHHHH---HHHhcccCCEEEEE
Confidence 99988877654433 34444444455544
No 389
>PRK07577 short chain dehydrogenase; Provisional
Probab=53.33 E-value=88 Score=23.65 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=43.8
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHc--CCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDS--GGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~--~~~~d~vv~~vG~G 111 (194)
.+|+..+|--|.++|....+.|.+++++...... . .+..++.-...++.... .+++. ...+|.||..+|..
T Consensus 6 vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 79 (234)
T PRK07577 6 VLVTGATKGIGLALSLRLANLGHQVIGIARSAID--D----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIA 79 (234)
T ss_pred EEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--c----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence 4899999999999999999999998887654322 1 11112221223332222 22211 12589999998875
Q ss_pred h
Q 038938 112 G 112 (194)
Q Consensus 112 G 112 (194)
.
T Consensus 80 ~ 80 (234)
T PRK07577 80 L 80 (234)
T ss_pred C
Confidence 3
No 390
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=53.29 E-value=92 Score=23.70 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=43.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----hhcCC-eE-ecCCCCCCCchH-HHHHc---CCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----SKIPN-AY-LLQQHENPANPK-IWKDS---GGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----~~~~~-~~-~~~~~~~~~~~~-i~~q~---~~~~d~v 104 (194)
.+|+..+|.-|.+++......|.+++++........... ....+ .. +.-...++.... ++++. .+.+|.|
T Consensus 4 ~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id~v 83 (247)
T PRK09730 4 ALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAAL 83 (247)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 488889999999999999999998776543332111111 11111 11 111223332222 23322 2479999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 84 i~~ag~~ 90 (247)
T PRK09730 84 VNNAGIL 90 (247)
T ss_pred EECCCCC
Confidence 9999864
No 391
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=53.11 E-value=1.2e+02 Score=24.39 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=51.8
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeE-ecCCCCCCCchHHHHHcCCC
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAY-LLQQHENPANPKIWKDSGGK 100 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~-~~~~~~~~~~~~i~~q~~~~ 100 (194)
+...+.++.+ ++...+|..|.+++..|+.+|.+.+++.+.. ++.. .+.-+.. ..+ .... .+..
T Consensus 161 ~~~~~~~~~~---vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~~~~-~~~~--------~~~~ 225 (329)
T cd08298 161 KLAGLKPGQR---LGLYGFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADWAGD-SDDL--------PPEP 225 (329)
T ss_pred HhhCCCCCCE---EEEECCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcEEec-cCcc--------CCCc
Confidence 4455666655 5445688999999999999999876665543 2222 2222211 111 1111 1224
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.++...+++.++.-+ ++...+.-+++.+
T Consensus 226 vD~vi~~~~~~~~~~~~---~~~l~~~G~~v~~ 255 (329)
T cd08298 226 LDAAIIFAPVGALVPAA---LRAVKKGGRVVLA 255 (329)
T ss_pred ccEEEEcCCcHHHHHHH---HHHhhcCCEEEEE
Confidence 89888877766544444 3333444455544
No 392
>PRK06484 short chain dehydrogenase; Validated
Probab=53.05 E-value=71 Score=27.88 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=43.7
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDALVAG 107 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~vv~~ 107 (194)
.+|+..+|.-|.++|..-.+.|.+++++-......++...+..+ . ++.-...++.... +.+++ +++|.+|..
T Consensus 272 ~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id~li~n 350 (520)
T PRK06484 272 VAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARW-GRLDVLVNN 350 (520)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHc-CCCCEEEEC
Confidence 58888889999999998899999877764332111111111111 1 1221233332222 33334 479999999
Q ss_pred cCCc
Q 038938 108 IRTG 111 (194)
Q Consensus 108 vG~G 111 (194)
+|..
T Consensus 351 Ag~~ 354 (520)
T PRK06484 351 AGIA 354 (520)
T ss_pred CCCc
Confidence 8864
No 393
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=52.81 E-value=76 Score=26.46 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcCCCCCEEEEec
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSGGKFDALVAGI 108 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~~~~d~vv~~v 108 (194)
|..-.+|..|+.++.+|+++|++++++-+...++....+. .++.-.+.++.... +.++. ++|.|+...
T Consensus 2 ililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad---~~~~~~~~d~~~l~~~~~~~--~id~v~~~~ 70 (380)
T TIGR01142 2 VLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAH---RSYVINMLDGDALRAVIERE--KPDYIVPEI 70 (380)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCc---eEEEcCCCCHHHHHHHHHHh--CCCEEEecc
Confidence 3344578899999999999999999998765444333232 23322344432221 33322 588777543
No 394
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=52.78 E-value=74 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..+|--|..++..-.+.|.+++++...
T Consensus 4 vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 4 ALVTGAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred EEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4888899999999999888899987777654
No 395
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.75 E-value=26 Score=30.36 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=35.8
Q ss_pred HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEec
Q 038938 93 IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIES 135 (194)
Q Consensus 93 i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~ 135 (194)
+.+.++-++=.||-+.|-..+++.+..+|+.++|+++|-||=-
T Consensus 106 lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIl 148 (451)
T COG1797 106 LAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVIL 148 (451)
T ss_pred HHHHhCCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEE
Confidence 7777775556677788889999999999999999999888743
No 396
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=52.56 E-value=1.2e+02 Score=24.46 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=55.3
Q ss_pred HHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCch----HHHH
Q 038938 22 EDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANP----KIWK 95 (194)
Q Consensus 22 ~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~----~i~~ 95 (194)
.+...+.+|.+ .+|. .+|-.|.+++..|+.+|.+.+++.... .++.. ..+.+. .+++ ++++... .+.+
T Consensus 154 ~~~~~~~~g~~--VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~--~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~ 227 (341)
T cd08262 154 VRRARLTPGEV--ALVI-GCGPIGLAVIAALKARGVGPIVASDFS--PERRALALAMGADIVVD-PAADSPFAAWAAELA 227 (341)
T ss_pred HHhcCCCCCCE--EEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC--HHHHHHHHHcCCcEEEc-CCCcCHHHHHHHHHH
Confidence 34455667755 3455 569999999999999999876665432 33332 222221 2222 1222111 1223
Q ss_pred HcC-CCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 96 DSG-GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 96 q~~-~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
... ..+|.++-++|+.+.+ ...++...+.-+++-+
T Consensus 228 ~~~~~~~d~vid~~g~~~~~---~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 228 RAGGPKPAVIFECVGAPGLI---QQIIEGAPPGGRIVVV 263 (341)
T ss_pred HhCCCCCCEEEECCCCHHHH---HHHHHHhccCCEEEEE
Confidence 333 3599999887763333 3334444455555544
No 397
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=52.50 E-value=79 Score=26.04 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=27.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|..-.-||-|..+|-.++.+|++++++-+.
T Consensus 139 vgIvG~G~IG~~vA~~l~afG~~V~~~~~~ 168 (312)
T PRK15469 139 IGILGAGVLGSKVAQSLQTWGFPLRCWSRS 168 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 888899999999999999999999988653
No 398
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=52.37 E-value=74 Score=22.55 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCCCCccceEEEeCCChHHH--HHHHHHHHcCCcEEEEe
Q 038938 27 ISPGKQYNVLVEITSANAGI--GLASIASSRGYKIIVKM 63 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~--a~A~~a~~~Gl~~~iv~ 63 (194)
.+||+. .++-++|||... ..+..|+..|++++.+.
T Consensus 101 ~~~gDv--li~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDV--LIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-E--EEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 456765 467788899665 45677888999998875
No 399
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=51.93 E-value=1.5e+02 Score=25.14 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=48.8
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHh-hhcC--------Ce--EecCCCCCCCch
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGY--KIIVKMPNTYSIQRRM-SKIP--------NA--YLLQQHENPANP 91 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl--~~~iv~p~~~~~~k~~-~~~~--------~~--~~~~~~~~~~~~ 91 (194)
..+++|++ ++|...+|--|...+..|+.+|. ..++++.. +.+|.+ +.+. |. ..++..+.+...
T Consensus 171 ~~~~~g~~--VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~--~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~ 246 (410)
T cd08238 171 MGIKPGGN--TAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDV--NDERLARAQRLFPPEAASRGIELLYVNPATIDDLH 246 (410)
T ss_pred cCCCCCCE--EEEEeCCCHHHHHHHHHHHhcccCCceEEEEcC--CHHHHHHHHHhccccccccCceEEEECCCccccHH
Confidence 34566755 35555579999999999999876 22333322 333333 2221 22 223321111212
Q ss_pred H-HHHHcCC-CCCEEEEecCCchhHHHHHHH
Q 038938 92 K-IWKDSGG-KFDALVAGIRTGGTITGAEKF 120 (194)
Q Consensus 92 ~-i~~q~~~-~~d~vv~~vG~GGt~~Gi~~~ 120 (194)
. +.+..++ .+|.+|.++|++.++.-....
T Consensus 247 ~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~ 277 (410)
T cd08238 247 ATLMELTGGQGFDDVFVFVPVPELVEEADTL 277 (410)
T ss_pred HHHHHHhCCCCCCEEEEcCCCHHHHHHHHHH
Confidence 2 3333443 589999998876655443333
No 400
>PRK06849 hypothetical protein; Provisional
Probab=51.90 E-value=1.1e+02 Score=25.82 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=28.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYS 68 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~ 68 (194)
++|..++.+.|..+|...++.|++++++-....+
T Consensus 7 VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 7 VLITGARAPAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 5788877788999999999999999998765433
No 401
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=50.83 E-value=1.3e+02 Score=24.14 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=54.3
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCCCC
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGGKF 101 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~ 101 (194)
+.+.+|++ .+|...+|-.|.+++..|+.+|.+.+++.... ++.. ...-+. ..++ .+++.... +....+..+
T Consensus 135 ~~~~~~~~--vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~v 208 (329)
T cd08250 135 GEMKSGET--VLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD---EKAEFLKSLGCDRPIN-YKTEDLGEVLKKEYPKGV 208 (329)
T ss_pred cCCCCCCE--EEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH---HHHHHHHHcCCceEEe-CCCccHHHHHHHhcCCCC
Confidence 44566655 46777789999999999999999866655422 2221 211221 1222 12222222 333333458
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|.|+-++|+ .. +...++...+.-+++-+
T Consensus 209 d~v~~~~g~-~~---~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 209 DVVYESVGG-EM---FDTCVDNLALKGRLIVI 236 (329)
T ss_pred eEEEECCcH-HH---HHHHHHHhccCCeEEEE
Confidence 999998874 22 33334444444455544
No 402
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=50.75 E-value=84 Score=27.10 Aligned_cols=92 Identities=17% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHc-CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCch
Q 038938 13 IACSMIKDAEDK-GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANP 91 (194)
Q Consensus 13 ~a~~~~~~a~~~-g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~ 91 (194)
.+...+..+.+. +.+ .+.+ +..-.+|.+|.++|.+.+..|.+.+.+...+.......++.-+..-..+++
T Consensus 164 v~~~Av~la~~~~~~l-~~kk---vlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~----- 234 (414)
T PRK13940 164 VAFSAITLAKRQLDNI-SSKN---VLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS----- 234 (414)
T ss_pred HHHHHHHHHHHHhcCc-cCCE---EEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH-----
Confidence 344455555543 222 3444 777788999999999999999987666666532222113321100001111
Q ss_pred HHHHHcCCCCCEEEEecCCchhH
Q 038938 92 KIWKDSGGKFDALVAGIRTGGTI 114 (194)
Q Consensus 92 ~i~~q~~~~~d~vv~~vG~GGt~ 114 (194)
.+.+-+. ..|.||.++++...+
T Consensus 235 ~l~~~l~-~aDiVI~aT~a~~~v 256 (414)
T PRK13940 235 ELPQLIK-KADIIIAAVNVLEYI 256 (414)
T ss_pred HHHHHhc-cCCEEEECcCCCCee
Confidence 0222232 579999999887665
No 403
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=50.71 E-value=99 Score=25.30 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=40.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCCCccceEEEeCCCh---HHHHHHHHHHHcCCcEEEEeCCCCC
Q 038938 2 GLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSAN---AGIGLASIASSRGYKIIVKMPNTYS 68 (194)
Q Consensus 2 ~~~ptgS~K~R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN---~g~a~A~~a~~~Gl~~~iv~p~~~~ 68 (194)
|-.|+-|...|............|++ . |+...++| -.+.+|..|..+|.+.++++|+...
T Consensus 49 GE~~~Ls~eEr~~v~~~~v~~~~grv----p---viaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 49 GESPTLTLEERKEVLEAVVEAVGGRV----P---VIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred ccchhcCHHHHHHHHHHHHHHHCCCC----c---EEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 44677788888655333322223322 2 77766666 5677788889999999999987643
No 404
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.54 E-value=1.5e+02 Score=24.89 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=67.5
Q ss_pred HHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchH----HH
Q 038938 20 DAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPK----IW 94 (194)
Q Consensus 20 ~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~----i~ 94 (194)
+|-+++..++|.+ +.....|--|+..-..|+.+|.+=+|++.-. +.|++ +++-|....++..+...+. +.
T Consensus 160 HAcr~~~vk~Gs~---vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~--~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 160 HACRRAGVKKGSK---VLVLGAGPIGLLTGLVAKAMGASDVVITDLV--ANRLELAKKFGATVTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhhhhcCcccCCe---EEEECCcHHHHHHHHHHHHcCCCcEEEeecC--HHHHHHHHHhCCeEEeeccccccHHHHHHHH
Confidence 4556677888877 9999999999999999999999877776543 34444 4446655544444433333 34
Q ss_pred HHcC--CCCCEEEEecCCchhHHHHHHHHH
Q 038938 95 KDSG--GKFDALVAGIRTGGTITGAEKFLK 122 (194)
Q Consensus 95 ~q~~--~~~d~vv~~vG~GGt~~Gi~~~l~ 122 (194)
++.- ..||..|-++|..-++--....+|
T Consensus 235 ~~~~g~~~~d~~~dCsG~~~~~~aai~a~r 264 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAEVTIRAAIKATR 264 (354)
T ss_pred HhhccccCCCeEEEccCchHHHHHHHHHhc
Confidence 4432 249999999998888765555554
No 405
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.47 E-value=1e+02 Score=24.54 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=40.0
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhc-CC-eEecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 36 LVEITS--ANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKI-PN-AYLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 36 vv~aSs--GN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~-~~-~~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
+|+..+ +.-|.++|..-++.|.++++.-......++.+ .++ .. .++.-...++.... +.++. +++|.+
T Consensus 9 lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~-g~iDil 87 (274)
T PRK08415 9 LIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDL-GKIDFI 87 (274)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 566654 46788888888889998777643311112221 111 11 22221223332222 33344 479999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|..
T Consensus 88 VnnAG~~ 94 (274)
T PRK08415 88 VHSVAFA 94 (274)
T ss_pred EECCccC
Confidence 9999864
No 406
>PRK08219 short chain dehydrogenase; Provisional
Probab=50.36 E-value=73 Score=23.91 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=41.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEec-CCCCCCCchH-HHHHcCCCCCEEEEecCCc
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLL-QQHENPANPK-IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~-~~~~~~~~~~-i~~q~~~~~d~vv~~vG~G 111 (194)
.+|...+|.-|.+++....+. .+++++.......+....+.++..+. -...++.... ++++.+ ++|.||..+|..
T Consensus 6 vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~id~vi~~ag~~ 82 (227)
T PRK08219 6 ALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLG-RLDVLVHNAGVA 82 (227)
T ss_pred EEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcC-CCCEEEECCCcC
Confidence 488899999999999888777 77666654321111111111122221 1122222111 344443 699999998864
No 407
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=49.88 E-value=60 Score=27.11 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=32.9
Q ss_pred HcCCCCCCCccceEEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCC
Q 038938 23 DKGSISPGKQYNVLVEITSA--NAGIGLASIASSRGYKIIVKMPNTY 67 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsG--N~g~a~A~~a~~~Gl~~~iv~p~~~ 67 (194)
+.|.+ +|.+ |+....+ |...+++..++++|++++++.|+..
T Consensus 149 ~~g~l-~g~~---va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (331)
T PRK02102 149 HFGPL-KGLK---LAYVGDGRNNMANSLMVGGAKLGMDVRICAPKEL 191 (331)
T ss_pred HhCCC-CCCE---EEEECCCcccHHHHHHHHHHHcCCEEEEECCccc
Confidence 34554 4555 7777776 8999999999999999999999875
No 408
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=49.60 E-value=1.2e+02 Score=23.54 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=58.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchHHHHHcC-CCCCEEEEecCCchhH
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWKDSG-GKFDALVAGIRTGGTI 114 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~q~~-~~~d~vv~~vG~GGt~ 114 (194)
++....|..|..+|-.-...|..++++-.+.....+..+.+.+.+.... +..+...+++.+ .+.|++|+.+|.--.-
T Consensus 3 iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~g--d~t~~~~L~~agi~~aD~vva~t~~d~~N 80 (225)
T COG0569 3 IIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIG--DATDEDVLEEAGIDDADAVVAATGNDEVN 80 (225)
T ss_pred EEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEe--cCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence 7888999999999999999999999988654332222122233332221 222333667775 4799999999986554
Q ss_pred HHHHH-HHHhhCCCceEEE
Q 038938 115 TGAEK-FLKEKNLEMKVYG 132 (194)
Q Consensus 115 ~Gi~~-~l~~~~~~~~vig 132 (194)
.=++. +++++ .-+++|+
T Consensus 81 ~i~~~la~~~~-gv~~via 98 (225)
T COG0569 81 SVLALLALKEF-GVPRVIA 98 (225)
T ss_pred HHHHHHHHHhc-CCCcEEE
Confidence 33333 33433 3334444
No 409
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=49.46 E-value=1.1e+02 Score=22.88 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=23.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.++...+|..|.++|....+.|.+++++-+
T Consensus 31 vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 31 AVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 466667899999999999999987666643
No 410
>PLN02702 L-idonate 5-dehydrogenase
Probab=49.34 E-value=1.5e+02 Score=24.43 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=55.5
Q ss_pred HcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCC--CCCCchH-HHHH--
Q 038938 23 DKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQH--ENPANPK-IWKD-- 96 (194)
Q Consensus 23 ~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~--~~~~~~~-i~~q-- 96 (194)
+...+.+|.+ ++...+|..|.++...|+.+|.+.++++... ..+.. .+.-+......+ .++.... +.+.
T Consensus 175 ~~~~~~~g~~---vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 175 RRANIGPETN---VLVMGAGPIGLVTMLAARAFGAPRIVIVDVD--DERLSVAKQLGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred HhcCCCCCCE---EEEECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHhCCCEEEecCcccccHHHHHHHHhh
Confidence 3344556655 4444679999999999999999865555432 33332 222221111111 1122122 2221
Q ss_pred -cCCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 97 -SGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 97 -~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.++.+|.|+-++|++..+ ...++.+.+.-+++.+.
T Consensus 250 ~~~~~~d~vid~~g~~~~~---~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 250 AMGGGIDVSFDCVGFNKTM---STALEATRAGGKVCLVG 285 (364)
T ss_pred hcCCCCCEEEECCCCHHHH---HHHHHHHhcCCEEEEEc
Confidence 234689999998865543 33444444554565543
No 411
>PRK06847 hypothetical protein; Provisional
Probab=49.30 E-value=32 Score=28.51 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=26.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
|+.-.+|-.|+++|...++.|++++|+=
T Consensus 7 V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 7 VLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 8888999999999999999999998884
No 412
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.28 E-value=1.3e+02 Score=23.76 Aligned_cols=75 Identities=20% Similarity=0.140 Sum_probs=39.1
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 36 LVEITSA--NAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 36 vv~aSsG--N~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
+|+..++ .-|.++|..-++.|.++++.-......+..+ ....+ . ++.-...++.... +.++. +++|.+
T Consensus 10 lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~iD~l 88 (262)
T PRK07984 10 LVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW-PKFDGF 88 (262)
T ss_pred EEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc-CCCCEE
Confidence 5666554 5778888888889998766543211111111 11111 1 1211222332222 33334 379999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|.+
T Consensus 89 innAg~~ 95 (262)
T PRK07984 89 VHSIGFA 95 (262)
T ss_pred EECCccC
Confidence 9999854
No 413
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=49.22 E-value=96 Score=25.18 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=33.0
Q ss_pred HHHHHHHHHHc-CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 14 ACSMIKDAEDK-GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 14 a~~~~~~a~~~-g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
+...+..+++. +..-.|.+ +..-..|+.|.++|..++.+|++++++-+
T Consensus 134 Ae~ai~~al~~~~~~l~gk~---v~IiG~G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 134 AEGAIMMAIEHTDFTIHGSN---VMVLGFGRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred HHHHHHHHHHhcCCCCCCCE---EEEEcChHHHHHHHHHHHHCCCEEEEEeC
Confidence 33444445543 21124445 88888899999999999999997766654
No 414
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=48.84 E-value=93 Score=23.77 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH----HHHhhhc---CCeEecCCCCCCCchHHHHHcCC
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSI----QRRMSKI---PNAYLLQQHENPANPKIWKDSGG 99 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~----~k~~~~~---~~~~~~~~~~~~~~~~i~~q~~~ 99 (194)
++||+. +.+-..|.-++++-|+ +.+=.+.++-=+..+. .+++.++ ++...+... -++.+.+++
T Consensus 32 ~~~g~~---l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~----Ap~~L~~~~- 101 (187)
T COG2242 32 PRPGDR---LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD----APEALPDLP- 101 (187)
T ss_pred CCCCCE---EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc----chHhhcCCC-
Confidence 457777 9999999888888887 5555555554333221 1222222 122222211 122445554
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhh-CCCceEEE
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEK-NLEMKVYG 132 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~-~~~~~vig 132 (194)
.||+||+. +|+.+-++...+.+. .|.-|+|.
T Consensus 102 ~~daiFIG--Gg~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 102 SPDAIFIG--GGGNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CCCEEEEC--CCCCHHHHHHHHHHHcCcCCeEEE
Confidence 79999876 448888888877664 56556554
No 415
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=48.81 E-value=52 Score=23.33 Aligned_cols=95 Identities=8% Similarity=0.095 Sum_probs=53.7
Q ss_pred EEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCC-----CchHHHHHcCCCCCEEEEecCCc
Q 038938 37 VEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENP-----ANPKIWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 37 v~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~-----~~~~i~~q~~~~~d~vv~~vG~G 111 (194)
.....|+.|.-+|+.-++.|.+++++.... ..+... +.+..+.....+. ....-......++|.||+++=+-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK--EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH--HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh--heeEEEEecccceecccccccCcchhccCCCcEEEEEeccc
Confidence 345679999999999989999999998766 333322 1111111111000 00000011224789999999888
Q ss_pred hhHHHHHHHHHh-hCCCceEEEEec
Q 038938 112 GTITGAEKFLKE-KNLEMKVYGIES 135 (194)
Q Consensus 112 Gt~~Gi~~~l~~-~~~~~~vigve~ 135 (194)
.+..-+.. ++. ..+++.|+-.+-
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQN 102 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESS
T ss_pred chHHHHHH-HhhccCCCcEEEEEeC
Confidence 88765544 443 346666766553
No 416
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=48.68 E-value=1.3e+02 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=25.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|..-.+.|.++++...
T Consensus 4 ~lITGas~gIG~~~a~~l~~~G~~V~~~~~ 33 (267)
T TIGR02685 4 AVVTGAAKRIGSSIAVALHQEGYRVVLHYH 33 (267)
T ss_pred EEEeCCCCcHHHHHHHHHHhCCCeEEEEcC
Confidence 478888899999999999999998776543
No 417
>PRK09126 hypothetical protein; Provisional
Probab=48.68 E-value=29 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+.-.+|-.|.++|.+.++.|++++|+=.
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 88889999999999999999999988853
No 418
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=48.62 E-value=1.1e+02 Score=26.36 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=26.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..||--|.++|..-.+.|.+++++...
T Consensus 181 VLITGASgGIG~aLA~~La~~G~~Vi~l~r~ 211 (406)
T PRK07424 181 VAVTGASGTLGQALLKELHQQGAKVVALTSN 211 (406)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999999988999998877543
No 419
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=48.55 E-value=1.4e+02 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=24.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
++.-.+|..++|++++....|++-+.++..+
T Consensus 127 vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 127 MVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 7777788889999999999999766555544
No 420
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=48.42 E-value=29 Score=30.54 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+.-.+|-+|.++|+.+++.|+++.++=.
T Consensus 9 VvIIGGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 9 LLVIGGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 88889999999999999999999888754
No 421
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=48.37 E-value=64 Score=25.59 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHc-CCC-CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 11 SRIACSMIKDAEDK-GSI-SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 11 ~R~a~~~~~~a~~~-g~~-~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
-++.+..+..+.+. +.- -.|.+ ++.-..||-|..+|..-..+|.+++.+
T Consensus 11 g~GV~~~~~~~~~~~~~~~l~g~~---v~IqGfG~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLGGDSLEGKR---VAIQGFGNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp HHHHHHHHHHHHHHTTCHSSTTCE---EEEEESSHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCE---EEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 35667777777765 322 24555 888999999999999999999998877
No 422
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=48.34 E-value=62 Score=27.00 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCCCCCCccceEEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCC
Q 038938 25 GSISPGKQYNVLVEITSA--NAGIGLASIASSRGYKIIVKMPNTY 67 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsG--N~g~a~A~~a~~~Gl~~~iv~p~~~ 67 (194)
|.+ +|.+ |+....+ |...|++.+++++|+.++++.|+..
T Consensus 151 g~l-~g~k---ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 151 KPY-KDIK---FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred CCc-CCcE---EEEecCCCcchHHHHHHHHHHcCCEEEEECCccc
Confidence 554 4545 6666664 8999999999999999999999864
No 423
>PRK07576 short chain dehydrogenase; Provisional
Probab=48.25 E-value=1.1e+02 Score=23.92 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=25.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.++|...+..|.+++++-.
T Consensus 12 ilItGasggIG~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 12 VVVVGGTSGINLGIAQAFARAGANVAVASR 41 (264)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 488889999999999988899998776654
No 424
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=48.24 E-value=1.5e+02 Score=23.98 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=43.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcCCCCCEEEEecCCchhH
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSGGKFDALVAGIRTGGTI 114 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~~~~d~vv~~vG~GGt~ 114 (194)
+|. ..|.-|...+..|+.+|.+.++++.. ..++.+ +.. ....+ +. ++.+..+|.||-++|+..++
T Consensus 149 lV~-G~G~vG~~a~q~ak~~G~~~v~~~~~--~~~rl~~a~~--~~~i~----~~-----~~~~~g~Dvvid~~G~~~~~ 214 (308)
T TIGR01202 149 LIV-GHGTLGRLLARLTKAAGGSPPAVWET--NPRRRDGATG--YEVLD----PE-----KDPRRDYRAIYDASGDPSLI 214 (308)
T ss_pred EEE-CCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHhhhh--ccccC----hh-----hccCCCCCEEEECCCCHHHH
Confidence 455 57999999999999999987766643 334432 221 11111 11 01123589999999986655
Q ss_pred HHHHHHH
Q 038938 115 TGAEKFL 121 (194)
Q Consensus 115 ~Gi~~~l 121 (194)
.-....+
T Consensus 215 ~~~~~~l 221 (308)
T TIGR01202 215 DTLVRRL 221 (308)
T ss_pred HHHHHhh
Confidence 4333333
No 425
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=48.15 E-value=1.4e+02 Score=23.75 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=54.8
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchH-HHHHcCC-C
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPK-IWKDSGG-K 100 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~-i~~q~~~-~ 100 (194)
+.+.+|.+ .+|...+|..|.+++..|+.+|.+.+++.... ++.+ ....+. .+++ +.+..... +.+..++ .
T Consensus 134 ~~~~~~~~--vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (323)
T cd05282 134 LKLPPGDW--VIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGADEVID-SSPEDLAQRVKEATGGAG 207 (323)
T ss_pred ccCCCCCE--EEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCCEEec-ccchhHHHHHHHHhcCCC
Confidence 34456655 35656778999999999999999977665543 2221 222221 1111 12211111 4444443 5
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+|.|+-++|+-... ..++...+.-+++-+
T Consensus 208 ~d~vl~~~g~~~~~----~~~~~l~~~g~~v~~ 236 (323)
T cd05282 208 ARLALDAVGGESAT----RLARSLRPGGTLVNY 236 (323)
T ss_pred ceEEEECCCCHHHH----HHHHhhCCCCEEEEE
Confidence 89999988865432 233334455566544
No 426
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=48.13 E-value=86 Score=25.39 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=22.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCc-EEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYK-IIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~-~~iv~p 64 (194)
++...+|..|+|+|++.+..|.+ ++|+-.
T Consensus 129 vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 129 LTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 55555689999999999999998 555433
No 427
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=48.08 E-value=73 Score=26.25 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=32.4
Q ss_pred CCCCchhhHHHHHHHHHHHH-cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCc-EEEE
Q 038938 4 LDHPSTPSRIACSMIKDAED-KGSISPGKQYNVLVEITSANAGIGLASIASSRGYK-IIVK 62 (194)
Q Consensus 4 ~ptgS~K~R~a~~~~~~a~~-~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~-~~iv 62 (194)
++.|.||..- -|.+... .| +.++++ .|+.|.+|..+.-++++.+.+|++ +.+|
T Consensus 246 ~~~~~~~~~~---el~~~~~~~g-i~~~~~--iv~yC~sG~~A~~~~~~L~~~G~~~v~~Y 300 (320)
T PLN02723 246 DSSQTLLPAE---ELKKRFEQEG-ISLDSP--IVASCGTGVTACILALGLHRLGKTDVPVY 300 (320)
T ss_pred CCCCCCCCHH---HHHHHHHhcC-CCCCCC--EEEECCcHHHHHHHHHHHHHcCCCCeeEe
Confidence 3445666552 2333333 33 334433 477777888888788888999996 5555
No 428
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=47.98 E-value=33 Score=27.70 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=25.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|+....|=.|.++|.+.++.|++++|+=..
T Consensus 4 V~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 4 VAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 888899999999999999999999998544
No 429
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=47.77 E-value=71 Score=25.65 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=53.9
Q ss_pred cCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchH-HHHHcCCCC
Q 038938 24 KGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPK-IWKDSGGKF 101 (194)
Q Consensus 24 ~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-i~~q~~~~~ 101 (194)
...+.+|.+ .+|...+|..|.+++..|+.+|.+++++.. .+. .+.-+. ..++. ++. .. +.+.. ..+
T Consensus 157 ~~~~~~g~~--vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~--~~~~g~~~~~~~-~~~--~~~l~~~~-~~~ 224 (325)
T cd08264 157 TAGLGPGET--VVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDW--LKEFGADEVVDY-DEV--EEKVKEIT-KMA 224 (325)
T ss_pred hcCCCCCCE--EEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHH--HHHhCCCeeecc-hHH--HHHHHHHh-CCC
Confidence 345666755 355555699999999999999998666541 111 111121 12221 111 12 32223 468
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
|.|+-++|+ ..+...++.+.+.-+++-+
T Consensus 225 d~vl~~~g~----~~~~~~~~~l~~~g~~v~~ 252 (325)
T cd08264 225 DVVINSLGS----SFWDLSLSVLGRGGRLVTF 252 (325)
T ss_pred CEEEECCCH----HHHHHHHHhhccCCEEEEE
Confidence 999988774 2455666666666666544
No 430
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.74 E-value=1.1e+02 Score=23.99 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=39.0
Q ss_pred eEEEeCCCh--HHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCC-eE-ecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSAN--AGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPN-AY-LLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN--~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~-~~-~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..++| -|.++|..-++.|.++++.-......+... .+..+ .+ +.-...++.... +.++++ ++|.
T Consensus 11 ~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g-~iDi 89 (260)
T PRK06603 11 GLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG-SFDF 89 (260)
T ss_pred EEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC-CccE
Confidence 367666654 677777777788998766533210011111 12212 11 111223332222 444454 7999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 90 lVnnag~~ 97 (260)
T PRK06603 90 LLHGMAFA 97 (260)
T ss_pred EEEccccC
Confidence 99988753
No 431
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=47.66 E-value=93 Score=26.71 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=53.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH-------HHh--hhcCCeEecCCCCCCCchH--------HHHHcC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQ-------RRM--SKIPNAYLLQQHENPANPK--------IWKDSG 98 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~-------k~~--~~~~~~~~~~~~~~~~~~~--------i~~q~~ 98 (194)
|-.-..||-|+.+|-.++.+|+++..+-|...... ..+ ..+.+...++ -|.+.+ .+.++
T Consensus 154 vGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh---~Plt~~T~~li~~~~l~~m- 229 (409)
T PRK11790 154 LGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLH---VPETPSTKNMIGAEELALM- 229 (409)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEc---CCCChHHhhccCHHHHhcC-
Confidence 88889999999999999999999998876421100 000 1222333222 122221 44555
Q ss_pred CCCCEEEEecCCchhH--HHHHHHHHh
Q 038938 99 GKFDALVAGIRTGGTI--TGAEKFLKE 123 (194)
Q Consensus 99 ~~~d~vv~~vG~GGt~--~Gi~~~l~~ 123 (194)
+++++++-++-|+.+ ..+..+|++
T Consensus 230 -k~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 230 -KPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred -CCCeEEEECCCCcccCHHHHHHHHHc
Confidence 589999999999996 355666653
No 432
>PRK02106 choline dehydrogenase; Validated
Probab=47.56 E-value=27 Score=31.11 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=26.0
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCC
Q 038938 100 KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVE 137 (194)
Q Consensus 100 ~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~ 137 (194)
..|+|||..|++|.. ++.-|.+ +++.+|+.+|.-.
T Consensus 5 ~~D~iIVG~G~aG~v--vA~rLae-~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCV--LANRLSE-DPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHH--HHHHHHh-CCCCeEEEecCCC
Confidence 579999999988876 3334443 4788999998754
No 433
>PRK06198 short chain dehydrogenase; Provisional
Probab=47.52 E-value=1.2e+02 Score=23.43 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=42.6
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHH-Hh---hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR-RM---SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDA 103 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k-~~---~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~ 103 (194)
.+|+..+|.-|..+|......|.+.++++.......+ .. .+... . ++.-...++.... +.++++ .+|.
T Consensus 9 vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g-~id~ 87 (260)
T PRK06198 9 ALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG-RLDA 87 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC-CCCE
Confidence 4888889999999999999999984444433221111 10 11111 1 1222233332222 333343 6999
Q ss_pred EEEecCCc
Q 038938 104 LVAGIRTG 111 (194)
Q Consensus 104 vv~~vG~G 111 (194)
+|..+|..
T Consensus 88 li~~ag~~ 95 (260)
T PRK06198 88 LVNAAGLT 95 (260)
T ss_pred EEECCCcC
Confidence 99998864
No 434
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=47.50 E-value=1.5e+02 Score=23.87 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCccceEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcC-CCCCEEE
Q 038938 30 GKQYNVLVEITSANAGIGLASIASSR-GYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSG-GKFDALV 105 (194)
Q Consensus 30 g~~~~~vv~aSsGN~g~a~A~~a~~~-Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~-~~~d~vv 105 (194)
|.+ .+|...+|..|.+++..|+.+ |.+++.+.... ++.+ ...-+. .+++ ++......+.+ .. ..+|.|+
T Consensus 149 g~~--vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~---~~~~~l~~~g~~~~~~-~~~~~~~~i~~-~~~~~vd~vl 221 (336)
T TIGR02817 149 KRA--LLIIGGAGGVGSILIQLARQLTGLTVIATASRP---ESQEWVLELGAHHVID-HSKPLKAQLEK-LGLEAVSYVF 221 (336)
T ss_pred CCE--EEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcH---HHHHHHHHcCCCEEEE-CCCCHHHHHHH-hcCCCCCEEE
Confidence 545 356666899999999999987 99876665432 2222 111221 2222 12211111433 43 3589999
Q ss_pred EecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 106 AGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 106 ~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
-++|++..+.-....+ .+.-+++.+
T Consensus 222 ~~~~~~~~~~~~~~~l---~~~G~~v~~ 246 (336)
T TIGR02817 222 SLTHTDQHFKEIVELL---APQGRFALI 246 (336)
T ss_pred EcCCcHHHHHHHHHHh---ccCCEEEEE
Confidence 8777766654444433 445556544
No 435
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=47.47 E-value=1.4e+02 Score=27.90 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=59.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh----------hhc------------CCeEecCC---CCCC-
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM----------SKI------------PNAYLLQQ---HENP- 88 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~----------~~~------------~~~~~~~~---~~~~- 88 (194)
+|..-..|-+|.++|+.++..|++++++-+.....++.. .++ ....+... +.+-
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 416 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNAD 416 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCC
Confidence 477788999999999999999999999865432221111 000 00111111 1111
Q ss_pred CchH-----------HHHHcCC--CCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCC
Q 038938 89 ANPK-----------IWKDSGG--KFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVE 137 (194)
Q Consensus 89 ~~~~-----------i~~q~~~--~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~ 137 (194)
..++ ++.++.. +||+|++..-|+=.+.-++..++. .-|++|.-...
T Consensus 417 lViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~---p~r~ig~Hff~ 475 (737)
T TIGR02441 417 MVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSR---PEKVIGMHYFS 475 (737)
T ss_pred eehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCC---ccceEEEeccC
Confidence 1111 5555543 589999888777778888777642 23566655443
No 436
>PRK05854 short chain dehydrogenase; Provisional
Probab=47.38 E-value=90 Score=25.32 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=24.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|+..++.-|.++|..-++.|.+++++...
T Consensus 17 ~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 17 AVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888888888888888899887776543
No 437
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=47.05 E-value=17 Score=29.12 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCC
Q 038938 101 FDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVE 137 (194)
Q Consensus 101 ~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~ 137 (194)
+|+||+..|.||....- .|. ..++.+|..+|.-.
T Consensus 1 yD~iIVGsG~~G~v~A~--rLs-~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVAS--RLS-EAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHH--HHT-TSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHH--HHh-hCCCCcEEEEEccc
Confidence 48999999988875332 333 35677899998644
No 438
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=47.04 E-value=1.5e+02 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=25.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|..-..|+.|.++|...++.|.+++++...
T Consensus 4 I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 4 IAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 566678999999999999999998888764
No 439
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=47.03 E-value=37 Score=27.55 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCCCCchH--HHHHcCCCC-CEEEEe-cCCchhHHHHHHHHHh---hCCCceEEEEecCCc
Q 038938 84 QHENPANPK--IWKDSGGKF-DALVAG-IRTGGTITGAEKFLKE---KNLEMKVYGIESVES 138 (194)
Q Consensus 84 ~~~~~~~~~--i~~q~~~~~-d~vv~~-vG~GGt~~Gi~~~l~~---~~~~~~vigve~~~~ 138 (194)
+|-.|.... +.+-+.... +.|+-| +|+|+++..+...+++ ..+...++|+|....
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~ 88 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPE 88 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HH
T ss_pred eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHH
Confidence 344454333 444444333 457766 7999999998887753 347789999998654
No 440
>PRK06753 hypothetical protein; Provisional
Probab=47.00 E-value=36 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=26.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+...+|-.|.++|...++.|++++|+=.
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 78888999999999999999999988743
No 441
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.88 E-value=71 Score=27.70 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=44.0
Q ss_pred CCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeEecCCCCCCCchHHHHHcCCCCCEEEEe
Q 038938 29 PGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAYLLQQHENPANPKIWKDSGGKFDALVAG 107 (194)
Q Consensus 29 ~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~~~~~~~~~~~~~i~~q~~~~~d~vv~~ 107 (194)
.|.+ ++....|+-|..+|..++.+|.+++++-.. +.+.. +...|.... ... +.+ ...|.||.+
T Consensus 211 ~Gk~---VlViG~G~IG~~vA~~lr~~Ga~ViV~d~d---p~ra~~A~~~G~~v~-------~l~--eal-~~aDVVI~a 274 (425)
T PRK05476 211 AGKV---VVVAGYGDVGKGCAQRLRGLGARVIVTEVD---PICALQAAMDGFRVM-------TME--EAA-ELGDIFVTA 274 (425)
T ss_pred CCCE---EEEECCCHHHHHHHHHHHhCCCEEEEEcCC---chhhHHHHhcCCEec-------CHH--HHH-hCCCEEEEC
Confidence 5666 999999999999999999999986554322 12211 222232111 111 112 257999998
Q ss_pred cCCchhHH
Q 038938 108 IRTGGTIT 115 (194)
Q Consensus 108 vG~GGt~~ 115 (194)
+|+-.++.
T Consensus 275 TG~~~vI~ 282 (425)
T PRK05476 275 TGNKDVIT 282 (425)
T ss_pred CCCHHHHH
Confidence 87766553
No 442
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=46.69 E-value=50 Score=26.23 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=28.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
++....|.-+.++|..|+.+|++++|+-|.
T Consensus 103 L~IfGaG~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 103 VVLFGAGHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred EEEECCcHHHHHHHHHHhcCCCEEEEEeCC
Confidence 999999999999999999999999998765
No 443
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=46.49 E-value=1.7e+02 Score=24.17 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCch-HHHHHcC-CCCC
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANP-KIWKDSG-GKFD 102 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~-~i~~q~~-~~~d 102 (194)
+.++.+ .+|. .+|..|.+++..|+.+|.+.++++..+ .++.+ ....+. .+++ ++++... .+.+..+ ..+|
T Consensus 185 ~~~g~~--VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~s--~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 185 VRPGET--VAVI-GVGGVGSSAIQLAKAFGASPIIAVDVR--DEKLAKAKELGATHTVN-AAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCCE--EEEE-CCcHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHhCCceEec-CCcccHHHHHHHHhCCCCCC
Confidence 345554 3555 678999999999999999844444322 22222 222221 1222 1222212 2545543 3589
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 103 ALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 103 ~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
.|+-++|+-..+ ...++...+.-+++.+.
T Consensus 259 ~vld~vg~~~~~---~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEALGKPETF---KLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeCCCHHHH---HHHHHHHhcCCEEEEEc
Confidence 999998864232 33344444555666553
No 444
>PRK05868 hypothetical protein; Validated
Probab=46.22 E-value=38 Score=28.34 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
|+...+|-.|.++|...++.|++++|+=
T Consensus 4 V~IvGgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 4 VVVSGASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEc
Confidence 7888999999999999999999998884
No 445
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=46.09 E-value=1.7e+02 Score=24.28 Aligned_cols=96 Identities=23% Similarity=0.239 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHh--------------hh
Q 038938 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGY--KIIVKMPNTYSIQRRM--------------SK 75 (194)
Q Consensus 12 R~a~~~~~~a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl--~~~iv~p~~~~~~k~~--------------~~ 75 (194)
+.....|...+..|-+..|. .+++|..+|..+|+| |..++.+|- ..+-|--++...+++. ++
T Consensus 22 ~nV~~QI~y~k~~gp~~ngP-KkVLviGaSsGyGLa-~RIsaaFG~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~ 99 (398)
T COG3007 22 ANVLQQIDYVKAAGPIKNGP-KKVLVIGASSGYGLA-ARISAAFGPGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAK 99 (398)
T ss_pred HHHHHHHHHHHhcCCccCCC-ceEEEEecCCcccHH-HHHHHHhCCCCceeeEEeecCCccCCCcchhhhHHHHHHHHHH
Confidence 34456677777788776563 356777777778888 456666665 3444433333322222 55
Q ss_pred cCCeEecC----CCCCCCc---hH-HHHHcCCCCCEEEEecCC
Q 038938 76 IPNAYLLQ----QHENPAN---PK-IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 76 ~~~~~~~~----~~~~~~~---~~-i~~q~~~~~d~vv~~vG~ 110 (194)
+.|.|-.+ .|+|..- ++ |-.+++ ++|.||.+.-+
T Consensus 100 ~kGlyAksingDaFS~e~k~kvIe~Ik~~~g-~vDlvvYSlAs 141 (398)
T COG3007 100 QKGLYAKSINGDAFSDEMKQKVIEAIKQDFG-KVDLVVYSLAS 141 (398)
T ss_pred hcCceeeecccchhhHHHHHHHHHHHHHhhc-cccEEEEeccC
Confidence 55644332 2333221 11 444565 89999988644
No 446
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=45.98 E-value=1.8e+02 Score=24.96 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=41.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh--hhcCCeEecCCCCCCCchHHHHHcCCCCCEEEEecCCchh
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM--SKIPNAYLLQQHENPANPKIWKDSGGKFDALVAGIRTGGT 113 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~--~~~~~~~~~~~~~~~~~~~i~~q~~~~~d~vv~~vG~GGt 113 (194)
+..-.+|..|..++.+.+..|.+-+++...+ .++.. ++.-+.... .+ ..+.+.+ ...|.||.++|+...
T Consensus 185 vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~--~~ra~~la~~~g~~~~-~~-----~~~~~~l-~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 185 VLVIGAGEMGELVAKHLAEKGVRKITVANRT--LERAEELAEEFGGEAI-PL-----DELPEAL-AEADIVISSTGAPHP 255 (423)
T ss_pred EEEECchHHHHHHHHHHHHCCCCeEEEEeCC--HHHHHHHHHHcCCcEe-eH-----HHHHHHh-ccCCEEEECCCCCCc
Confidence 7777889999999999999998555444433 22221 222221111 01 0122222 258999999998776
Q ss_pred H
Q 038938 114 I 114 (194)
Q Consensus 114 ~ 114 (194)
+
T Consensus 256 ~ 256 (423)
T PRK00045 256 I 256 (423)
T ss_pred E
Confidence 5
No 447
>PLN02477 glutamate dehydrogenase
Probab=45.86 E-value=1.3e+02 Score=26.03 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHc-CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 10 PSRIACSMIKDAEDK-GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 10 K~R~a~~~~~~a~~~-g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
--||.+..+..+.+. |.--+|.+ |+.-..||-|..+|......|.+++.+.
T Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~---VaIqGfGnVG~~~A~~L~e~GakVVaVs 236 (410)
T PLN02477 185 TGRGVVFATEALLAEHGKSIAGQT---FVIQGFGNVGSWAAQLIHEKGGKIVAVS 236 (410)
T ss_pred chHHHHHHHHHHHHHcCCCccCCE---EEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 447777777777653 33234556 9999999999999999999999988553
No 448
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=45.84 E-value=34 Score=26.54 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHcCCcEEEEeCCCC
Q 038938 41 SANAGIGLASIASSRGYKIIVKMPNTY 67 (194)
Q Consensus 41 sGN~g~a~A~~a~~~Gl~~~iv~p~~~ 67 (194)
.|-+-.+||.+|++.|+++.|++...-
T Consensus 52 GGC~P~GLAlAA~rrG~~vev~~~~~~ 78 (207)
T PF11814_consen 52 GGCGPFGLALAAARRGFKVEVWVSTDG 78 (207)
T ss_pred CCcChHHHHHHHHHcCCceEEEECCCC
Confidence 355667777888899999999987653
No 449
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=45.82 E-value=39 Score=29.08 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=28.6
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
...|++ |+....|+-|+.+|..++.+|.+++++
T Consensus 192 ~l~Gk~---VvViG~G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 192 LIAGKT---VVVAGYGWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred CCCcCE---EEEECCCHHHHHHHHHHhhCcCEEEEE
Confidence 346766 999999999999999999999996665
No 450
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=45.59 E-value=50 Score=24.30 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
+++.-.+||-|.+.+..+..+|.+.+++-
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 48999999999999999999999876653
No 451
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=45.58 E-value=97 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=27.2
Q ss_pred EEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC
Q 038938 37 VEITSANAGIGLASIASSRGYKIIVKMPNTYS 68 (194)
Q Consensus 37 v~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~ 68 (194)
+..-.+|...++..+++++|+.++++.|+..+
T Consensus 158 ~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 158 YIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34444789999999999999999999998854
No 452
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=45.52 E-value=1.8e+02 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=25.5
Q ss_pred EEEeCCChHHHHHHHHHHHcC--------CcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRG--------YKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~G--------l~~~iv~p~ 65 (194)
|..-.+||+|.++|...+.-| .++.++..+
T Consensus 2 I~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 2 VAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred EEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 555678999999999999988 899998763
No 453
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=45.41 E-value=36 Score=29.41 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=25.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
||.-.+|-.|++.|+.+++.|++++|+-
T Consensus 7 VvVVG~G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 7 VLVIGGGNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 8888999999999999999999888764
No 454
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=45.21 E-value=37 Score=28.41 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=26.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+...+|-.|.++|.+-++.|++++|+=.
T Consensus 6 v~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 6 IAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 88899999999999999999999999864
No 455
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=45.12 E-value=37 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+.-.+|-+|.++|+..++.|++++|+=.
T Consensus 3 vvIIGaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 3 VIVVGAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 66777999999999999999999888744
No 456
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.94 E-value=78 Score=28.87 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=27.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.|+.-.+|-.|++.|+..++.|++++||=.
T Consensus 329 ~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~ 358 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLARNGVAVTVYDR 358 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 499999999999999999999999888843
No 457
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.72 E-value=66 Score=27.59 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 41 SANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 41 sGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
||-.|.++|.+++..|.+++++...
T Consensus 213 SG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 213 SGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred cchHHHHHHHHHHHCCCEEEEeCCC
Confidence 8899999999999999999887644
No 458
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=44.56 E-value=47 Score=28.71 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.7
Q ss_pred CCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 29 PGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 29 ~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.|++ |+.-.+||.|+-+|..+.++|.+++++...
T Consensus 271 ~gk~---VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 271 AGKS---VVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CCCe---EEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 4445 999999999999999999999998888654
No 459
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.44 E-value=68 Score=22.86 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCC
Q 038938 42 ANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHE 86 (194)
Q Consensus 42 GN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~ 86 (194)
.+.=.-+--+|++.|+++.+++.-....... .+.|.|...+.-.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~d~~~~-~~HPeW~~~~~~G 86 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSWDEDAA-ERHPEWFVRDADG 86 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeecChHHH-HhCCceeeECCCC
Confidence 3443455578999999999999877444333 5567777665443
No 460
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=44.40 E-value=1.3e+02 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
++.-.+|..|++++++.+.+|++-+.++..+
T Consensus 130 vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 130 VVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 8888899999999999999999655555443
No 461
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=44.34 E-value=1.1e+02 Score=21.88 Aligned_cols=34 Identities=9% Similarity=-0.093 Sum_probs=23.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYS 68 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~ 68 (194)
.|+.+.+|..+..+|+.-+.+|.+=+.++..+..
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 4777777877777777777789965555555543
No 462
>PRK07538 hypothetical protein; Provisional
Probab=44.20 E-value=40 Score=28.53 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=26.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+...+|=.|.++|...++.|++++||=.
T Consensus 3 V~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 3 VLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 78889999999999999999999988843
No 463
>PRK06475 salicylate hydroxylase; Provisional
Probab=44.09 E-value=42 Score=28.31 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+...+|-.|+++|.+.++.|++++|+=.
T Consensus 5 V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 5 PLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 88899999999999999999999988754
No 464
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=44.03 E-value=1.4e+02 Score=22.63 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
+|+..+|.-|.++|....+.|.+++++..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~ 30 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYH 30 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 77888899999999999999999766654
No 465
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=43.95 E-value=1.6e+02 Score=27.19 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.3
Q ss_pred eEEEeCCChHHHHHHHHHH-HcCCcEEEEeCCC
Q 038938 35 VLVEITSANAGIGLASIAS-SRGYKIIVKMPNT 66 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~-~~Gl~~~iv~p~~ 66 (194)
+|..-.+|..|.++|..++ +.|++++++-+..
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4778889999999999988 5899999987653
No 466
>PRK05599 hypothetical protein; Provisional
Probab=43.88 E-value=1.5e+02 Score=22.94 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=21.9
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..++.-|.++|..-++ |.+++++-.
T Consensus 3 vlItGas~GIG~aia~~l~~-g~~Vil~~r 31 (246)
T PRK05599 3 ILILGGTSDIAGEIATLLCH-GEDVVLAAR 31 (246)
T ss_pred EEEEeCccHHHHHHHHHHhC-CCEEEEEeC
Confidence 47888888889999887664 877666543
No 467
>PRK07121 hypothetical protein; Validated
Probab=43.84 E-value=38 Score=29.54 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=25.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
||.-.+|..|++.|..|+..|.+++++-
T Consensus 23 VvVVGaG~AGl~AA~~aae~G~~VillE 50 (492)
T PRK07121 23 VVVVGFGAAGACAAIEAAAAGARVLVLE 50 (492)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999999999988874
No 468
>PRK07904 short chain dehydrogenase; Provisional
Probab=43.76 E-value=1.5e+02 Score=23.00 Aligned_cols=32 Identities=6% Similarity=0.136 Sum_probs=24.9
Q ss_pred eEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCC
Q 038938 35 VLVEITSANAGIGLASIASSR-GYKIIVKMPNT 66 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~-Gl~~~iv~p~~ 66 (194)
.+|+..+|--|.++|....+. |.+++++....
T Consensus 11 vlItGas~giG~~la~~l~~~gg~~V~~~~r~~ 43 (253)
T PRK07904 11 ILLLGGTSEIGLAICERYLKNAPARVVLAALPD 43 (253)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 588888888999998887777 48887775543
No 469
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=43.69 E-value=1.4e+02 Score=22.48 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=46.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcC-CeEecCCCCCCCchH-HHHHcCCCCCEEEEecCCc
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIP-NAYLLQQHENPANPK-IWKDSGGKFDALVAGIRTG 111 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~G 111 (194)
+|...+|--|.+++....+.|..++.+.....+......+.. ..+..+ +.+..... +++.. .+|+||..++.-
T Consensus 2 lI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~~~~~~~~~~--~~d~vi~~a~~~ 76 (236)
T PF01370_consen 2 LITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGD-LTDKEQLEKLLEKA--NIDVVIHLAAFS 76 (236)
T ss_dssp EEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESE-TTSHHHHHHHHHHH--TESEEEEEBSSS
T ss_pred EEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEee-cccccccccccccc--CceEEEEeeccc
Confidence 788899999999999999999998866665544433211111 122222 22322222 44444 689999998864
No 470
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=43.66 E-value=37 Score=30.88 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=26.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+.-.+|-+|.++|+.+++.|+++.++=.
T Consensus 74 VvVIGGGi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 74 VLVVGGGATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 89999999999999999999999777743
No 471
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=43.65 E-value=38 Score=30.17 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=26.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+.-.+|-+|.++|+.+++.|++++++=.
T Consensus 9 VvIIGGGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 9 VIIIGGGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred EEEECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence 88889999999999999999999988843
No 472
>PRK07041 short chain dehydrogenase; Provisional
Probab=43.55 E-value=99 Score=23.35 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=41.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhh--h-cCCeE-ecCCCCCCCchH-HHHHcCCCCCEEEEecCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMS--K-IPNAY-LLQQHENPANPK-IWKDSGGKFDALVAGIRT 110 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~--~-~~~~~-~~~~~~~~~~~~-i~~q~~~~~d~vv~~vG~ 110 (194)
+|+..+|.-|.++|..-.+.|.+++++............ + ..... +.-...++.... ++++. +++|.+|..+|.
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA-GPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc-CCCCEEEECCCC
Confidence 466778899999999999999998776543211111101 1 11111 111222222222 44554 368999998876
Q ss_pred c
Q 038938 111 G 111 (194)
Q Consensus 111 G 111 (194)
.
T Consensus 80 ~ 80 (230)
T PRK07041 80 T 80 (230)
T ss_pred C
Confidence 4
No 473
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=43.44 E-value=1.1e+02 Score=27.66 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=27.2
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
.+|...+|..|.+++....+.|.+++++...
T Consensus 83 VLVTGATGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 83 AFVAGATGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5788889999999999999999998888654
No 474
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=43.34 E-value=46 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=27.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+...+|=.|+++|.+.++.|++++||=.
T Consensus 84 VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 84 VLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 99999999999999999999999999854
No 475
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=43.23 E-value=1.7e+02 Score=23.32 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=53.7
Q ss_pred CCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCe-EecCCCCCCCchHHHHHcCCCCCE
Q 038938 25 GSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNA-YLLQQHENPANPKIWKDSGGKFDA 103 (194)
Q Consensus 25 g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~-~~~~~~~~~~~~~i~~q~~~~~d~ 103 (194)
..+.++.+ .+|...+|..|.+++..++.+|.+++++.... ..+...+..+. ...+ ..+ ....+.... .+|.
T Consensus 158 ~~~~~~~~--vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~d~ 229 (332)
T cd08259 158 AGVKKGDT--VLVTGAGGGVGIHAIQLAKALGARVIAVTRSP--EKLKILKELGADYVID-GSK--FSEDVKKLG-GADV 229 (332)
T ss_pred hCCCCCCE--EEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHcCCcEEEe-cHH--HHHHHHhcc-CCCE
Confidence 45556654 46777889999999999999999987665432 11111211111 1111 111 122222333 5899
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 104 LVAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 104 vv~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
++.++|+-. +...++...+.-+++-+
T Consensus 230 v~~~~g~~~----~~~~~~~~~~~g~~v~~ 255 (332)
T cd08259 230 VIELVGSPT----IEESLRSLNKGGRLVLI 255 (332)
T ss_pred EEECCChHH----HHHHHHHhhcCCEEEEE
Confidence 999887543 23334444455555544
No 476
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=43.17 E-value=76 Score=21.73 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHcCCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCc
Q 038938 93 IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVES 138 (194)
Q Consensus 93 i~~q~~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~ 138 (194)
+.+++ +..+||+.+-+|.+.--+ ..+.|++.|+++.+...
T Consensus 11 ~A~~~--~ak~Ivv~T~sG~ta~~i----sk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 11 LAEDL--NAKAIVVFTESGRTARLI----SKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHH--TESEEEEE-SSSHHHHHH----HHT-TSSEEEEEESSHH
T ss_pred HHHhc--CCCEEEEECCCchHHHHH----HhhCCCCeEEEEcCcHH
Confidence 34445 368999999999887444 44579999999998654
No 477
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=43.03 E-value=40 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
||.-.+|..|++.|..|+..|.+++|+-
T Consensus 64 VvVVG~G~AGl~AAi~Aa~~Ga~VivlE 91 (506)
T PRK06481 64 IVIVGAGGAGMSAAIEAKDAGMNPVILE 91 (506)
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence 8888999999999999999999988763
No 478
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=43.03 E-value=46 Score=29.69 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|++ |+.-.+|-.|++.|..++++|.+++|+-
T Consensus 135 ~~g~~---V~VIGaGpaGL~aA~~l~~~G~~V~v~e 167 (564)
T PRK12771 135 DTGKR---VAVIGGGPAGLSAAYHLRRMGHAVTIFE 167 (564)
T ss_pred CCCCE---EEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 34555 9999999999999999999999977764
No 479
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.02 E-value=1.4e+02 Score=25.04 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHhhhcCCeEecCCCCCCCchH-HHHHcCCCCCEE
Q 038938 26 SISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPK-IWKDSGGKFDAL 104 (194)
Q Consensus 26 ~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~-i~~q~~~~~d~v 104 (194)
.+.||+. +....-|--|.---.+|+.+|++++++-......+.....--.-.|++.+.++.-.. +...+++-+|.+
T Consensus 178 g~~pG~~---vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v 254 (360)
T KOG0023|consen 178 GLGPGKW---VGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTV 254 (360)
T ss_pred CCCCCcE---EEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceee
Confidence 3568877 644444447777778899999999998765433332212122234555555554332 444444334433
Q ss_pred EEecCCchhHHHHHHHHHhhCCCceEEEEe
Q 038938 105 VAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134 (194)
Q Consensus 105 v~~vG~GGt~~Gi~~~l~~~~~~~~vigve 134 (194)
. += .-.-+-..++...++-++|.|-
T Consensus 255 ~----~~-a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 255 S----NL-AEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred e----ec-cccchHHHHHHhhcCCEEEEEe
Confidence 3 11 1112333444445565666663
No 480
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=42.97 E-value=1.7e+02 Score=23.36 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=25.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
+..-..|+.|..+|+.-++.|.+++++..
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 66678999999999999999999888876
No 481
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=42.91 E-value=1.8e+02 Score=23.57 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCe-EecCCCCCCCchHHHHHcCCCCCEE
Q 038938 27 ISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNA-YLLQQHENPANPKIWKDSGGKFDAL 104 (194)
Q Consensus 27 ~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~-~~~~~~~~~~~~~i~~q~~~~~d~v 104 (194)
+.+|.+ .+| ...|..|.+++..|+.+|.+.+++.+.. ++.. ...-+. ..++. .+ ....++....+|.|
T Consensus 167 ~~~g~~--vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~vi~~-~~---~~~~~~~~~~~d~v 236 (337)
T cd05283 167 VGPGKR--VGV-VGIGGLGHLAVKFAKALGAEVTAFSRSP---SKKEDALKLGADEFIAT-KD---PEAMKKAAGSLDLI 236 (337)
T ss_pred CCCCCE--EEE-ECCcHHHHHHHHHHHHcCCeEEEEcCCH---HHHHHHHHcCCcEEecC-cc---hhhhhhccCCceEE
Confidence 556655 355 4579999999999999999766654432 2221 221121 11111 11 11123344568999
Q ss_pred EEecCCchhHHHHHHHHHhhCCCceEEEE
Q 038938 105 VAGIRTGGTITGAEKFLKEKNLEMKVYGI 133 (194)
Q Consensus 105 v~~vG~GGt~~Gi~~~l~~~~~~~~vigv 133 (194)
+-++|+-.++.- .++...+.-+++-+
T Consensus 237 ~~~~g~~~~~~~---~~~~l~~~G~~v~~ 262 (337)
T cd05283 237 IDTVSASHDLDP---YLSLLKPGGTLVLV 262 (337)
T ss_pred EECCCCcchHHH---HHHHhcCCCEEEEE
Confidence 999887533333 33333444455544
No 482
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=42.62 E-value=38 Score=28.28 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=27.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|+.-.+|-.|.++|+..++.|++++|+=..
T Consensus 10 ViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 10 IAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred EEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 888999999999999999999999888543
No 483
>PRK07201 short chain dehydrogenase; Provisional
Probab=42.56 E-value=97 Score=27.91 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=43.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh---hhcCC-e-EecCCCCCCCchH-----HHHHcCCCCCEE
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM---SKIPN-A-YLLQQHENPANPK-----IWKDSGGKFDAL 104 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~---~~~~~-~-~~~~~~~~~~~~~-----i~~q~~~~~d~v 104 (194)
.+|+..||.-|.++|..-.+.|.+++++.......+... .+..+ . ++.-...++.... +.+++ +.+|.+
T Consensus 374 vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~id~l 452 (657)
T PRK07201 374 VLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH-GHVDYL 452 (657)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc-CCCCEE
Confidence 578888899999999888889998777654321111111 11111 1 1111222322222 23334 379999
Q ss_pred EEecCCc
Q 038938 105 VAGIRTG 111 (194)
Q Consensus 105 v~~vG~G 111 (194)
|..+|.+
T Consensus 453 i~~Ag~~ 459 (657)
T PRK07201 453 VNNAGRS 459 (657)
T ss_pred EECCCCC
Confidence 9999864
No 484
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=42.49 E-value=41 Score=28.72 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred EEEeCCChHHHHHHHHHHHcC-CcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRG-YKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~G-l~~~iv~ 63 (194)
||.-.+|..|++.|..|++.| .+++|+-
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlE 30 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLE 30 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEe
Confidence 777889999999999999999 8877763
No 485
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.46 E-value=42 Score=29.48 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=26.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|+.-.+|-+|.++|+-+++.|+++.++=..
T Consensus 9 VvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 9 LFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 888899999999999999999998887543
No 486
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=42.19 E-value=42 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=27.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
|+.-.+|-.|++.|.++++.|++++++.+
T Consensus 214 vvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 88889999999999999999999999964
No 487
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=42.17 E-value=40 Score=27.84 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=26.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
|+.-.+|-.|.++|++-++.|++++|+=..
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 677889999999999999999999887544
No 488
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=42.16 E-value=2.1e+02 Score=24.20 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHcCCCCCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHh-hhcCCeE-ecCCCCCCCchH-HHHHc
Q 038938 21 AEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRM-SKIPNAY-LLQQHENPANPK-IWKDS 97 (194)
Q Consensus 21 a~~~g~~~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~~~~~k~~-~~~~~~~-~~~~~~~~~~~~-i~~q~ 97 (194)
+.+..+.++|.+ ++...-|--|+|.-..|+..|-.-+|-+.-. ++|.. +.+.|.. ++++-+.....+ |.+-.
T Consensus 177 v~nta~v~~G~t---vaV~GlGgVGlaaI~gA~~agA~~IiAvD~~--~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 177 VVNTAKVEPGDT---VAVFGLGGVGLAAIQGAKAAGAGRIIAVDIN--PEKLELAKKFGATHFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred hhhcccCCCCCe---EEEEeccHhHHHHHHHHHHcCCceEEEEeCC--HHHHHHHHhcCCceeecchhhhhHHHHHHHhc
Confidence 445566788988 9999999999999999999999888877643 44544 5555543 232221111111 33333
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCcccccCC---CCcccccccc------CCCCCcccccc---
Q 038938 98 GGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGG---KPGLHLIQGI------GIGIIPTVLDI--- 165 (194)
Q Consensus 98 ~~~~d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~~~~~~~---~~~~~~~~g~------~~~~~~~~~~~--- 165 (194)
++-.|+.|-++|.-.++.......+ .+-.+-+|||-+.+...-... ..+ +.+.|. +...+|..++.
T Consensus 252 ~gG~d~~~e~~G~~~~~~~al~~~~-~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~y~~ 329 (366)
T COG1062 252 DGGADYAFECVGNVEVMRQALEATH-RGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDLYMA 329 (366)
T ss_pred CCCCCEEEEccCCHHHHHHHHHHHh-cCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHHHHc
Confidence 4469999999999887765554444 366788889877664321110 011 112221 11123333321
Q ss_pred --ccCCcEEE--eCCHHHHHHHHHHHHH
Q 038938 166 --KMLDEVKT--VLLCHVVTETTKRLAL 189 (194)
Q Consensus 166 --~~vd~~~~--V~d~~e~~~a~~~la~ 189 (194)
--+|+.++ .+= +|+-+|..+|.+
T Consensus 330 Gkl~~d~lvt~~~~L-e~INeaf~~m~~ 356 (366)
T COG1062 330 GKLPLDRLVTHTIPL-EDINEAFDLMHE 356 (366)
T ss_pred CCCchhHHhhccccH-HHHHHHHHHHhC
Confidence 12566554 455 888888888854
No 489
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=41.96 E-value=40 Score=30.03 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=25.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
|+.-.+|..|++.|..|+..|.+++|+-
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~~V~lle 29 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGLNTAVIS 29 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEe
Confidence 6778899999999999999999988874
No 490
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=41.88 E-value=48 Score=28.40 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
|+.-..|-.|...|++++++|.++.++.
T Consensus 2 ViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 2 VIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 6777889999999999999999999994
No 491
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.80 E-value=1.9e+02 Score=23.36 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=24.5
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-.+.|.+++++-
T Consensus 15 ~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~ 43 (306)
T PRK07792 15 AVVTGAAAGLGRAEALGLARLGATVVVND 43 (306)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 48888899999999999999999876654
No 492
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.69 E-value=1.9e+02 Score=23.59 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPN 65 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~ 65 (194)
+..-..|+.|.++|..-.+.|.+++++-+.
T Consensus 7 I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 7 VAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 666789999999999999999999988774
No 493
>PRK12747 short chain dehydrogenase; Provisional
Probab=41.57 E-value=1.2e+02 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKM 63 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~ 63 (194)
.+|+..+|.-|.++|..-++.|.++++..
T Consensus 7 ~lItGas~gIG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 7 ALVTGASRGIGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence 58999999999999999999999877653
No 494
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=41.44 E-value=1.2e+02 Score=24.46 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=25.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
++.-.+|-.++|++++.+.+|.+-+.++..+
T Consensus 125 vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 125 VALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 7778889999999999999999755555443
No 495
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=41.43 E-value=1.5e+02 Score=22.35 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=41.8
Q ss_pred EEEeCCChHHHHHHHHHHH----cCCcEEEE-eCCCCCHHHHh-------------------hhcCCeE--ecCCCCCCC
Q 038938 36 LVEITSANAGIGLASIASS----RGYKIIVK-MPNTYSIQRRM-------------------SKIPNAY--LLQQHENPA 89 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~----~Gl~~~iv-~p~~~~~~k~~-------------------~~~~~~~--~~~~~~~~~ 89 (194)
+|..|.=-|...+|-.-++ .|=+++|+ +|++.+++-.. .+..++. ++..|.|+.
T Consensus 6 iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~ 85 (203)
T KOG3135|consen 6 IVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMP 85 (203)
T ss_pred EEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccccCcH
Confidence 4556666666667664443 23377777 77777765433 2222222 233344432
Q ss_pred chH---------HHHH--cCCCCCEEEEecCC
Q 038938 90 NPK---------IWKD--SGGKFDALVAGIRT 110 (194)
Q Consensus 90 ~~~---------i~~q--~~~~~d~vv~~vG~ 110 (194)
.-+ +|.+ +.++|--+|+++|+
T Consensus 86 AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs 117 (203)
T KOG3135|consen 86 AQWKAFWDSTGGLWAKGALAGKPAGIFVSTGS 117 (203)
T ss_pred HHHHHHHhccCchhhhccccCCceeEEEeccC
Confidence 111 6654 56799999999884
No 496
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.35 E-value=1.7e+02 Score=25.06 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=25.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 038938 36 LVEITSANAGIGLASIASSRGYKIIVKMPNT 66 (194)
Q Consensus 36 vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p~~ 66 (194)
+.....|..|+++|...+..|.+++++-...
T Consensus 8 ~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 8 ILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6677778999999999999999988875443
No 497
>PRK07775 short chain dehydrogenase; Provisional
Probab=41.34 E-value=1.7e+02 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=25.0
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|.-|.+++......|.+++++..
T Consensus 13 vlVtGa~g~iG~~la~~L~~~G~~V~~~~r 42 (274)
T PRK07775 13 ALVAGASSGIGAATAIELAAAGFPVALGAR 42 (274)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 588888999999999988889998766654
No 498
>PLN02494 adenosylhomocysteinase
Probab=41.20 E-value=73 Score=28.08 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCCccceEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 038938 28 SPGKQYNVLVEITSANAGIGLASIASSRGYKIIVK 62 (194)
Q Consensus 28 ~~g~~~~~vv~aSsGN~g~a~A~~a~~~Gl~~~iv 62 (194)
..|++ ++....|.-|+++|..++.+|++++++
T Consensus 252 LaGKt---VvViGyG~IGr~vA~~aka~Ga~VIV~ 283 (477)
T PLN02494 252 IAGKV---AVICGYGDVGKGCAAAMKAAGARVIVT 283 (477)
T ss_pred cCCCE---EEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 45666 999999999999999999999986554
No 499
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=41.10 E-value=1.4e+02 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=24.1
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 038938 35 VLVEITSANAGIGLASIASSRGYKIIVKMP 64 (194)
Q Consensus 35 ~vv~aSsGN~g~a~A~~a~~~Gl~~~iv~p 64 (194)
.+|+..+|--|.++|..-.+.|.+++++..
T Consensus 9 vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 9 VIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred EEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 478888888888888888888988766654
No 500
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=41.00 E-value=31 Score=30.10 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=28.0
Q ss_pred CEEEEecCCchhHHHHHHHHHhhCCCceEEEEecCCc
Q 038938 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVES 138 (194)
Q Consensus 102 d~vv~~vG~GGt~~Gi~~~l~~~~~~~~vigve~~~~ 138 (194)
-.+++++|+|-+..-.+++.+......+|++||-...
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 3667788888888777777777777899999997653
Done!