RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 038938
(194 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 235 bits (603), Expect = 2e-78
Identities = 106/221 (47%), Positives = 138/221 (62%), Gaps = 41/221 (18%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI SMI DAE KG I PG+ +VL+E TS N G+GLA A+++GYK+I+ MP + S +R
Sbjct: 48 RIGFSMISDAEKKGLIKPGE--SVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTER 105
Query: 72 RM-----------------------------SKIPNAYLLQQHENPANPK---------I 93
R+ +K PN Y+LQQ ENPANPK I
Sbjct: 106 RIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEI 165
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
WK +GGK D V+GI TGGTITGA K+LKE+N +K+YG+E VESA+L+GGKPG H IQG
Sbjct: 166 WKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQG 225
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G IP+VL++ ++DEV V + + ++LALK GLL
Sbjct: 226 IGAGFIPSVLNVDLIDEVVQVSSDESI-DMARQLALKEGLL 265
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 235 bits (603), Expect = 3e-78
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 41/221 (18%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R+ ++ AE +G + PGK +++VE +S N G+ LA + + RGYK+I+ MP + S++R
Sbjct: 53 RLGFAIYDKAEKEGKLIPGK--SIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLER 110
Query: 72 RM-----------------------------SKIPNAYLLQQHENPANPK---------I 93
R + PNA L Q N I
Sbjct: 111 RCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEI 170
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
W+ + D +AG+ TGGT+TG + LK+ ++ +E ES VL+GGKPG H IQG
Sbjct: 171 WEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQG 230
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G +P VLD ++DEV V + ET +L G+
Sbjct: 231 IGPGFVPDVLDRSLIDEVLCVAGDDAI-ETALKLTRSDGVF 270
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 236 bits (604), Expect = 3e-77
Identities = 107/221 (48%), Positives = 134/221 (60%), Gaps = 41/221 (18%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI SM+ DAE KG ISPGK +VLVE TS N GIGLA IA+SRGY++I+ MP + S++R
Sbjct: 156 RIGYSMVTDAEQKGFISPGK--SVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMER 213
Query: 72 RM-----------------------------SKIPNAYLLQQHENPANPK---------I 93
R+ P+AY+LQQ +NPANPK I
Sbjct: 214 RVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEI 273
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
W D+ GK D VAGI TGGTITG +F+KEKN + +V G+E ES +L+GGKPG H IQG
Sbjct: 274 WDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQG 333
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G IP LD K++DEV + + ET K+LALK GL+
Sbjct: 334 IGAGFIPKNLDQKIMDEVIAISSEEAI-ETAKQLALKEGLM 373
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 232 bits (595), Expect = 3e-77
Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 42/221 (19%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI +M++ AE G I P +++E TS N GI LA + ++RGY+ ++ MP T S++R
Sbjct: 49 RIGVAMLQAAEQAGLIKPDT---IILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLER 105
Query: 72 RM-----------------------------SKIPNAYLLQQHENPANPK---------I 93
RM ++ QQ ENPANP +
Sbjct: 106 RMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEV 165
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
W+D+ GK D +VAG+ TGGTITG + +KE+ + +E S VL+GG+ G H IQG
Sbjct: 166 WRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQG 225
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G +P VLD ++DE+ TV + +RLA + GLL
Sbjct: 226 IGAGFVPPVLDQDLVDEIITVGNEDAL-NVARRLAREEGLL 265
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 230 bits (590), Expect = 1e-76
Identities = 82/220 (37%), Positives = 112/220 (50%), Gaps = 39/220 (17%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A MIKDAE++G + PG V+VE TS N GIGLA IA+SRGY++I+ MP S +R
Sbjct: 42 RPAWYMIKDAEERGILRPGSG-QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100
Query: 72 RM----------------------------SKIPNAYLLQQHENPANPK---------IW 94
+ + A++ Q +NPAN + ++
Sbjct: 101 KRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELY 160
Query: 95 KDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGI 154
+ G+ DA V G TGGTITG ++LKE+ +KV +E S VL+GGK G H QG+
Sbjct: 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGM 220
Query: 155 GIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
G G IP LD+ +LD V V +RLA + GL
Sbjct: 221 GPGFIPENLDLSLLDGVIQVWEEDAF-PLARRLAREEGLF 259
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 225 bits (577), Expect = 3e-74
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 42/221 (19%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R+ +++ A G + PG ++E TS N GI L + GY++ + MP+T S++R
Sbjct: 60 RVGFNIVYQAIKDGRLKPGM---EIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVER 116
Query: 72 RM-----------------------------SKIPNAY-LLQQHENPANPK--------I 93
+M + P Y + Q NP N I
Sbjct: 117 QMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTANEI 176
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
W+D+ G+ D +V+ + T GT+ G + LKEK +K+ +E ESAVL G G H IQG
Sbjct: 177 WEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQG 236
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G IP + + +DE+ + + + + G++
Sbjct: 237 IGAGFIPDIYKKEFVDEIIPIKTQDAW-KMARAVVKYDGIM 276
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 221 bits (566), Expect = 7e-73
Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 41/220 (18%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RIA +MI+ AE G + PG +VE TS N GIGLA +A+++GYK ++ MP+T S++R
Sbjct: 47 RIALAMIEAAEKAGKLKPGD---TIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLER 103
Query: 72 RM----------------------------SKIPNAYLLQQHENPANPK---------IW 94
R + ++ QQ +N ANP+ I
Sbjct: 104 RNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKEIV 163
Query: 95 KDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGI 154
+ G + DA VAG+ TGGTITGA K L+E +K+Y +E +S VL+GGKPG H IQGI
Sbjct: 164 EQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGI 223
Query: 155 GIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
G G +P +LD + D V TV +R A + G+L
Sbjct: 224 GAGFVPDILDTSIYDGVITVTTEEAF-AAARRAAREEGIL 262
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 217 bits (555), Expect = 3e-71
Identities = 82/229 (35%), Positives = 121/229 (52%), Gaps = 50/229 (21%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI +M+ AE G+++ GK +V+ TS N GI LA +A++RGYKI + MP T S++R
Sbjct: 44 RIGANMVWQAEKDGTLTKGK---EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLER 100
Query: 72 RM-----------------------------SKIPNAY-LLQQHENPANPK--------- 92
+ + P+ Y +L+Q ENPANP+
Sbjct: 101 KRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPE 160
Query: 93 IWKDSGGKFDALVAGIRTGGTITGAEKFLK-EKNLEMKVYGIESVESAVLNGG------K 145
IWKD+ GK D +VAG+ TGG+ITG + +K + ++ +E VES V++ K
Sbjct: 161 IWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVK 220
Query: 146 PGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
PG H IQGIG G IP LD+ ++D V+TV + T +RL + G+L
Sbjct: 221 PGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTAL-ATARRLMAEEGIL 268
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 213 bits (544), Expect = 1e-69
Identities = 81/221 (36%), Positives = 110/221 (49%), Gaps = 44/221 (19%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A MI DAE +G + G +VE TS N GI +A I + RG+++I+ MP T S++R
Sbjct: 49 RPALFMILDAEKRGLLKNG-----IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVER 103
Query: 72 RM----------------------------SKIPNAYLLQQHENPANPK---------IW 94
R S+ A++L Q ENP N I
Sbjct: 104 RKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEIL 163
Query: 95 KDSGGKFDALVAGIRTGGTITGAEKFLKEK-NLEMKVYGIESVESAVLNGGKPGLHLIQG 153
K + DA VAG+ TGGTI+G + LK +K+ +E +S VL+GG+PG H IQG
Sbjct: 164 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQG 223
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G +P +LD ++DEV TV E + LA K GLL
Sbjct: 224 IGAGFVPKILDRSVIDEVITVEDEEAY-EMARYLAKKEGLL 263
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 186 bits (475), Expect = 3e-59
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 48/220 (21%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A SMI +AE +G I PG VL+E TS N GI LA IA+ +GY++ + MP+ S +R
Sbjct: 43 RAALSMIVEAEKRGEIKPGD---VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQER 99
Query: 72 R----------------------------MSKIPNAYLLQQHENPANPK---------IW 94
R M+ LL Q NP NP IW
Sbjct: 100 RAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIW 159
Query: 95 KDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGI 154
+ +GG+ V+ + T GTITG +F++E++ + + G++ E + + G I+
Sbjct: 160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG-------IRRW 212
Query: 155 GIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
+P + + ++DEV + T + LA++ G+
Sbjct: 213 PTEYLPGIFNASLVDEVLDIHQRDAE-NTMRELAVREGIF 251
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 187 bits (476), Expect = 5e-58
Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 60/234 (25%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI+ MI+DAE G++ PG + ++E TS N GIGLA A+ RGY+ I+ MP S ++
Sbjct: 143 RISLRMIEDAERDGTLKPG---DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEK 199
Query: 72 RM--------------------------------SKIPNAYLLQQHENPANPK------- 92
++IPN+++L Q+ N +NP
Sbjct: 200 VDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTA 259
Query: 93 --IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAV-----LNGGK 145
I + GK D LVA + TGGTITG + LKEK ++ G++ S + LN +
Sbjct: 260 DEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTE 319
Query: 146 PGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVT-----ETTKRLALKGGLL 194
+ ++GIG IPTVLD ++D+ + L + GLL
Sbjct: 320 QTTYEVEGIGYDFIPTVLDRTVVDKWFK------SNDEEAFTFARMLIAQEGLL 367
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 183 bits (468), Expect = 5e-58
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A MI+ AE G + PG ++E TS N GI LA A +GY++I MP S++R
Sbjct: 55 RPAVRMIEQAEADGLLRPGA---TILEPTSGNTGISLAMAARLKGYRLICVMPENTSVER 111
Query: 72 RM-----------------------------SKIPNAYLLQQHENPANPK---------I 93
R + P+ +L Q+ NPAN +
Sbjct: 112 RQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPEL 171
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
D + VAG+ T GT+ G +FL+E +K+ E G++ ++
Sbjct: 172 LADLP-EITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRN 223
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
+ G +P + D ++L +V V T+ L G+
Sbjct: 224 MDEGFVPELYDPEILTARYSVGAVDAV-RRTRELVHTEGIF 263
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 187 bits (478), Expect = 2e-57
Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 60/234 (25%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI M++DAE++G + PG ++E TS N GIGLA + +GYK I+ MP S ++
Sbjct: 95 RIGYRMVQDAEEQGLLKPGY---TIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEK 151
Query: 72 RM--------------------------------SKIPNAYLLQQHENPANPK------- 92
+ PN+ +L Q+ N NP
Sbjct: 152 VSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTA 211
Query: 93 --IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAV-----LNGGK 145
I K D +V T GTI+G + +KE+ ++ G++ S + LN
Sbjct: 212 AEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTD 271
Query: 146 PGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVT-----ETTKRLALKGGLL 194
+ ++GIG PTV D ++D + ++RL + GLL
Sbjct: 272 VQFYEVEGIGYDFPPTVFDDTVVDVWTK------IGDSDCFPMSRRLNAEEGLL 319
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 172 bits (438), Expect = 8e-53
Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 54/223 (24%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A +I + + G ++ + TS+N G+ L+++A GY+ V +P
Sbjct: 129 RPAVEIISRLSRR--VEKGS---LVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFG 183
Query: 72 R----------------------------MSKIPNAYLLQQHENPANPK---------IW 94
+ SK + Q N AN + I+
Sbjct: 184 KLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIF 243
Query: 95 KD---SGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLI 151
G + + T G ++ A +L+ + ++ ++ + + G I
Sbjct: 244 VQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------I 296
Query: 152 QGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
+ + G++ + + + + V L + E +A GL+
Sbjct: 297 RRVETGMLW-INMLDISYTLAEVTLEEAM-EAVVEVARSDGLV 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 4e-04
Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 87/247 (35%)
Query: 1 MGLLDHPSTP-SRIACSMIKDAEDKG--------SISPGKQYNVLVEITSANAGIGLA-- 49
+G+ + + P + + S+++D+ + SIS Q V + N+ +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 50 -SIASSRGYKIIV------------------KMPNTYSIQRRMSKIP---------NAYL 81
I+ G K +V K P+ Q S+IP N +L
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-Q---SRIPFSERKLKFSNRFL 421
Query: 82 ----------LQQHENPANPKIWKDSGGK---FDA--L---VAGIRTG-------GTITG 116
L PA+ I KD F+A + V G G+I+
Sbjct: 422 PVASPFHSHLLV----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 117 AEKFLKEKNLEMKVYGIESVESA---VLN---GGKPGL-----HLIQGIGIGIIP-TVLD 164
+ + + + V + + +L+ GG GL G G+ +I LD
Sbjct: 478 R---IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 165 IKMLDEV 171
I D+
Sbjct: 535 INPDDDY 541
Score = 37.3 bits (86), Expect = 0.002
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 10 PSRIACSMIKDAEDKGSISPGKQYNVLVEITSAN----------AG--IGLASIASSRGY 57
P R+A S ++A GK+ LVEI N AG L ++ + +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEI--VNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 58 ----KI-IVKMPNTYSIQR 71
KI I+++ + S++
Sbjct: 1872 IKLQKIDIIELQKSLSLEE 1890
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.10
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 29/131 (22%)
Query: 48 LASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWKDSGGK-FDALVA 106
SI S I+ + S R+ LL + E K ++ + L++
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQ-KFVEEVLRINYKFLMS 96
Query: 107 GIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIP-TVLDI 165
I+T E+ ++ ++ ++Y + N + V +
Sbjct: 97 PIKT-------EQ--RQPSMMTRMY--IEQRDRLYNDNQV-----------FAKYNVSRL 134
Query: 166 KMLDEVKTVLL 176
+ +++ LL
Sbjct: 135 QPYLKLRQALL 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.13
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 118 EKFLKE-KNLE--MKVYGIESVESAVLNG 143
EK + K L+ +K+Y +S + +
Sbjct: 18 EK--QALKKLQASLKLYADDSAPALAIKA 44
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 30.3 bits (69), Expect = 0.37
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESA 139
D + + GG G +K+ ++KV +E+ +SA
Sbjct: 178 AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 30.0 bits (68), Expect = 0.43
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 45 GIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWKDSGGKFDAL 104
G + S G +++K+ N Y+I + KI +L++ + GK L
Sbjct: 33 GYIMPPYELSAGDTLVLKLENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGK-PGL 91
Query: 105 --VAGIRTGGTI 114
V I TGGTI
Sbjct: 92 PEVTIIGTGGTI 103
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 29.4 bits (67), Expect = 0.57
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 102 DALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESA 139
D ++ I GG I G +K N +KV G+++
Sbjct: 190 DNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVH 227
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 29.4 bits (66), Expect = 0.62
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 93 IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIE 134
+ G KFD +V TG T G +V G++
Sbjct: 182 QEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVD 223
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 28.6 bits (65), Expect = 1.2
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 96 DSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESA 139
G A++A + GG + G +K + V G+E +
Sbjct: 165 RMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 81 LLQQHENPANPKIWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESA 139
+ +Q ++ A+ + GG I G F K+ K+ G+E +A
Sbjct: 202 INRQLKDI-------------HAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 27.6 bits (61), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 39 ITSANAGIGLASIA---SSRGYKIIV 61
+T N GIG I SS G +++
Sbjct: 17 VTGGNKGIGFE-ICKQLSSNGIMVVL 41
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 27.5 bits (62), Expect = 3.0
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 129 KVYGIESVESAV 140
V G +S E A+
Sbjct: 314 NVKGFDSNEFAI 325
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 27.4 bits (61), Expect = 3.5
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 11 SRIACSMIKDAEDKGSISPGKQYNVLVEITSAN-AG-----------IG--LASIASSRG 56
+ ++ + GS GK V+VE TS N +G +A I G
Sbjct: 97 RILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLG 156
Query: 57 YKIIV 61
Y++ V
Sbjct: 157 YEVEV 161
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 26.9 bits (58), Expect = 4.9
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 1 MGLLDHPSTPSRIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKII 60
+ L+ T + + D G PG +L+ + + AG+ + + G+ +
Sbjct: 13 LLLVGPAPTNEDLKLRYLDVLIDNGLNPPGPPKRILI-VGAGIAGLVAGDLLTRAGHDVT 71
Query: 61 V 61
+
Sbjct: 72 I 72
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 26.1 bits (58), Expect = 8.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 21 AEDKGSISPGK 31
AED G + G
Sbjct: 480 AEDLGKLERGF 490
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 26.0 bits (58), Expect = 9.4
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 129 KVYGIESVESAV 140
V G+E V + V
Sbjct: 310 SVVGVEGVPALV 321
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.384
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,942,146
Number of extensions: 179333
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 65
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)