RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 038938
(194 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 89.6 bits (221), Expect = 3e-22
Identities = 101/221 (45%), Positives = 131/221 (59%), Gaps = 41/221 (18%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIV---------- 61
RI SMI DAE KG I PG+ VL+E TS N G+GLA A+++GYK+I+
Sbjct: 46 RIGFSMISDAEKKGLIKPGES--VLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTER 103
Query: 62 -------------------KMPNTYSIQRRMSKIPNAYLLQQHENPANPK---------I 93
+ ++K PN Y+LQQ ENPANPK I
Sbjct: 104 RIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEI 163
Query: 94 WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
WK +GGK D V+GI TGGTITGA K+LKE+N +K+YG+E VESA+L+GGKPG H IQG
Sbjct: 164 WKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQG 223
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G IP+VL++ ++DEV V + + ++LALK GLL
Sbjct: 224 IGAGFIPSVLNVDLIDEVVQVSSDESI-DMARQLALKEGLL 263
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 89.0 bits (220), Expect = 3e-22
Identities = 79/221 (35%), Positives = 111/221 (50%), Gaps = 44/221 (19%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A MI DAE +G + G +VE TS N GI +A I + RG+++I+ MP T S++R
Sbjct: 39 RPALFMILDAEKRGLLKNG-----IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVER 93
Query: 72 R----------------------------MSKIPNAYLLQQHENPANPKIWKDS------ 97
R +S+ A++L Q ENP N + +
Sbjct: 94 RKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEIL 153
Query: 98 ---GGKFDALVAGIRTGGTITGAEKFLKE-KNLEMKVYGIESVESAVLNGGKPGLHLIQG 153
+ DA VAG+ TGGTI+G + LK +K+ +E +S VL+GG+PG H IQG
Sbjct: 154 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQG 213
Query: 154 IGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
IG G +P +LD ++DEV TV E + LA K GLL
Sbjct: 214 IGAGFVPKILDRSVIDEVITVEDEEAY-EMARYLAKKEGLL 253
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 76.1 bits (186), Expect = 2e-17
Identities = 82/220 (37%), Positives = 111/220 (50%), Gaps = 39/220 (17%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A MIKDAE++G + PG V+VE TS N GIGLA IA+SRGY++I+ MP S +R
Sbjct: 42 RPAWYMIKDAEERGILRPGSG-QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100
Query: 72 RMSKI----------------------------PNAYLLQQHENPANPK---------IW 94
+ A++ Q +NPAN + ++
Sbjct: 101 KRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELY 160
Query: 95 KDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGI 154
+ G+ DA V G TGGTITG ++LKE+ +KV +E S VL+GGK G H QG+
Sbjct: 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGM 220
Query: 155 GIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
G G IP LD+ +LD V V +RLA + GL
Sbjct: 221 GPGFIPENLDLSLLDGVIQVWEEDAF-PLARRLAREEGLF 259
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 63.4 bits (153), Expect = 7e-13
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 51/230 (22%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI +MI DAE +G + PG + VE T+ N GI LA +A++RGYK+ + MP T SI+R
Sbjct: 43 RIGANMIWDAEKRGVLKPGVEL---VEPTNGNTGIALAYVAAARGYKLTLTMPETMSIER 99
Query: 72 RM------------------------------SKIPNAYLLQQHENPANPK--------- 92
R S LLQQ NPANP+
Sbjct: 100 RKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPE 159
Query: 93 IWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVES--------AVLNGG 144
IW+D+ G+ D ++G+ TGGT+TG +++K + + + +
Sbjct: 160 IWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI 219
Query: 145 KPGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
KPG H IQGIG G IP LD+K++D+V + + T +RL + G+L
Sbjct: 220 KPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAI-STARRLMEEEGIL 268
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 63.0 bits (152), Expect = 9e-13
Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 50/229 (21%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSR---------------- 55
RI +M+ AE G+++ GK+ + TS N GI LA +A++R
Sbjct: 43 RIGANMVWQAEKDGTLTKGKEIV---DATSGNTGIALAYVAAARGYKITLTMPETMSLER 99
Query: 56 -------GYKIIVKMPNTY-------SIQRRMSKIPNAYLLQQHENPANPK--------- 92
G +++ + + S +L+Q ENPANP+
Sbjct: 100 KRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPE 159
Query: 93 IWKDSGGKFDALVAGIRTGGTITGAEKFLKE-KNLEMKVYGIESVESAVLNGGKPG---- 147
IWKD+ GK D +VAG+ TGG+ITG + +K ++ +E VES V++ G
Sbjct: 160 IWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVK 219
Query: 148 --LHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
H IQGIG G IP LD+ ++D V+TV + T +RL + G+L
Sbjct: 220 PGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTAL-ATARRLMAEEGIL 267
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 55.3 bits (132), Expect = 6e-10
Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 50/229 (21%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
RI+ MI+DAE G++ PG ++E TS N GIGLA A+ RGY+ I+ MP S ++
Sbjct: 79 RISLRMIEDAERDGTLKPGD---TIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEK 135
Query: 72 RM--------------------------------SKIPNAYLLQQHENPANPKI------ 93
++IPN+++L Q+ N +NP
Sbjct: 136 VDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTA 195
Query: 94 ---WKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGG-----K 145
+ GK D LVA + TGGTITG + LKEK ++ G++ S + +
Sbjct: 196 DEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTE 255
Query: 146 PGLHLIQGIGIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
+ ++GIG IPTVLD ++D+ + L + GLL
Sbjct: 256 QTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAF-TFARMLIAQEGLL 303
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 53.3 bits (127), Expect = 3e-09
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
R A +I + + G ++ + TS+N G+ L+++A GY+ V +P
Sbjct: 128 RPAVEIISRLSRR--VEKGS---LVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFG 182
Query: 72 RM 73
++
Sbjct: 183 KL 184
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 44.6 bits (104), Expect = 2e-06
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 48/220 (21%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQ- 70
R A SMI +AE +G I PG E TS N GI LA IA+ +GY++ + MP+ S +
Sbjct: 42 RAALSMIVEAEKRGEIKPGDVLI---EATSGNTGIALAMIAALKGYRMKLLMPDNMSQER 98
Query: 71 ---------------------------RRMSKIPNAYLLQQHENPAN---------PKIW 94
M+ LL Q NP N P+IW
Sbjct: 99 RAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIW 158
Query: 95 KDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGI 154
+ +GG+ V+ + T GTITG +F++E++ + + G++ E + + G +
Sbjct: 159 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT----- 213
Query: 155 GIGIIPTVLDIKMLDEVKTVLLCHVVTETTKRLALKGGLL 194
+P + + ++DEV + T + LA++ G+
Sbjct: 214 --EYLPGIFNASLVDEVLDI-HQRDAENTMRELAVREGIF 250
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 41.8 bits (97), Expect = 2e-05
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 7/127 (5%)
Query: 63 MPNTYSIQRRMSKIPNAYLLQQHENPANP-------KIWKDSGGKFDALVAGIRTGGTIT 115
+ +S+ + ++P D + + GG
Sbjct: 131 FDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAA 190
Query: 116 GAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDIKMLDEVKTVL 175
G +K+ ++KV +E+ +SA L H + +G+ + +K + + L
Sbjct: 191 GVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL 250
Query: 176 LCHVVTE 182
+ +
Sbjct: 251 CQEYLDD 257
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 39.9 bits (92), Expect = 9e-05
Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 21/160 (13%)
Query: 56 GYKIIVKMPNT---YSIQRRMSKIPNAYLLQQHEN-------PANPKIWKDSGGKFDALV 105
G ++I+ + + +S+ ++ +++ K + G DAL
Sbjct: 115 GGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALF 174
Query: 106 AGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGLHLIQGIGIGIIPTVLDI 165
+ GG ++G+ + +VYG+E ++ I
Sbjct: 175 VCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQT 234
Query: 166 KMLDEVKTVLLCHVVT-----------ETTKRLALKGGLL 194
+ L ++ V + K A + ++
Sbjct: 235 QHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIV 274
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 33.8 bits (76), Expect = 0.010
Identities = 6/65 (9%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 12 RIACSMIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQR 71
++ + + ++ + L++ +S G IV +P
Sbjct: 156 LGMTVLVSQVNRLRKMKRPV--VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMA 213
Query: 72 RMSKI 76
++ +
Sbjct: 214 QLVQP 218
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 28.1 bits (63), Expect = 0.23
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 118 EKFLKEKNLEMKVYGIESVESAVLNG 143
++FL +M VYG + ESA+ G
Sbjct: 12 DEFLVAVKKDMGVYGRDQTESALQMG 37
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId:
1423]}
Length = 440
Score = 28.1 bits (62), Expect = 0.76
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 1/136 (0%)
Query: 29 PGKQYNVLVEITSANAGIGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENP 88
GKQ ++ + + L +I YK I + Y +
Sbjct: 154 YGKQTLTTAQVNVSASDSSL-NINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHTL 212
Query: 89 ANPKIWKDSGGKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVLNGGKPGL 148
+P +D G K+ A T G E + +L K
Sbjct: 213 RDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRT 272
Query: 149 HLIQGIGIGIIPTVLD 164
+ +G+I D
Sbjct: 273 AELANGALGMIELNDD 288
>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 257
Score = 26.0 bits (56), Expect = 2.9
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 39 ITSANAGIGLASIA---SSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWK 95
I+ GIG A + G++I+ I R +++ + A +
Sbjct: 6 ISGCATGIGAA-TRKVLEAAGHQIVG-------IDIRDAEVIADLSTAEGRKQAIADVLA 57
Query: 96 DSGGKFDALV--AGI 108
D LV AG+
Sbjct: 58 KCSKGMDGLVLCAGL 72
>d1ilr1_ b.42.1.2 (1:) Interleukin-1 receptor antagonist protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 25.5 bits (56), Expect = 3.0
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 104 LVAGIRTGGTITGAEKFLKEKNLEMKVY-GIESVE---SAVLNGGKPGLHL 150
LVAG G + EK ++ GI + S V +G + L L
Sbjct: 23 LVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQL 73
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 25.4 bits (55), Expect = 3.5
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 46 IGLASIASSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKI-------WKDSG 98
+G+ S G + + + R+ K+P + +
Sbjct: 57 VGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPH 116
Query: 99 GKFDALVAGIRTGGTITGAEKFLKEKNLEMKVYGIESV-ESAVLNGGK 145
+ TGGT+ A + + ++ + I + E L G +
Sbjct: 117 DVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGRE 164
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 25.7 bits (56), Expect = 4.2
Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 16/91 (17%)
Query: 39 ITSANAGIGLASIA---SSRGYKIIVKMPNTYSIQRRMSKIPNAYL----------LQQH 85
+T GIG A I + G I N Y + +SK L+
Sbjct: 13 VTGGTKGIGHA-IVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPE 71
Query: 86 ENPANPKIWKDSGGKFDALV--AGIRTGGTI 114
+ GGK D L+ G
Sbjct: 72 REKLMQTVSSMFGGKLDILINNLGAIRSKPT 102
>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member
6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 25.4 bits (55), Expect = 5.0
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 39 ITSANAGIGLASIA---SSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPANPKIWK 95
+T+A GIG A A + G K+I N +Q + +
Sbjct: 11 LTAAAQGIGQA-AALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFA 69
Query: 96 DSGGKFDALV--AGIRTGGTITGAEKFLKEKNLEMKVYGIESVESAVL 141
+ + D L AG GT+ E+ + ++ + V + + A L
Sbjct: 70 NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFL 117
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 348
Score = 25.2 bits (54), Expect = 6.4
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 14/49 (28%)
Query: 26 SISPGKQYNVLVEITSAN------------AGIG--LASIASSRGYKII 60
S + V++E +S N IG LA++ G+++I
Sbjct: 1 SCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVI 49
>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 251
Score = 24.6 bits (53), Expect = 7.4
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 39 ITSANAGIGLASIA---SSRGYKIIVKMPNTYSIQRRMSKIPNAYLLQQHENPAN----- 90
+T + G+G IA + G ++V N K+ Y ++ +
Sbjct: 10 VTGGSRGLGFG-IAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYE 68
Query: 91 -----PKIWKDSGGKFDALV--AGIRTGGTI 114
+ K+ GK D +V AGI
Sbjct: 69 EVKKLLEAVKEKFGKLDTVVNAAGINRRHPA 99
>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium
[TaxId: 1404]}
Length = 261
Score = 24.7 bits (53), Expect = 9.1
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 15/48 (31%)
Query: 17 MIKDAEDKGSISPGKQYNVLVEITSANAGIGLASIA---SSRGYKIIV 61
M KD E K V++ T ++ G+G + +A ++ K++V
Sbjct: 1 MYKDLEGK---------VVVI--TGSSTGLGKS-MAIRFATEKAKVVV 36
>d1te1b_ b.29.1.11 (B:) Xylanase II {Penicillium funiculosum [TaxId:
28572]}
Length = 190
Score = 24.2 bits (53), Expect = 9.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 109 RTGGTITGAEKFLKEKNLEMKV----YGIESVE 137
R GGT+T A F K L +++ Y I S E
Sbjct: 145 RVGGTVTTANHFAAWKALGLEMGTYNYMIVSTE 177
>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 235
Score = 24.4 bits (52), Expect = 9.9
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 34 NVLVEITSANAGIGLASIA---SSRGYKIIV 61
V+ + +G A I GY ++
Sbjct: 4 KVI--VYGGKGALGSA-ILEFFKKNGYTVLN 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.384
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,982
Number of extensions: 31830
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 66
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)