BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038941
(615 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 26 RHATEWPIS-------DVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRV 78
RHA++ ++ D+ +D+ I V F HK L++ SG + + +S +
Sbjct: 11 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVI 70
Query: 79 NLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEM 121
NL E F + F Y + L N+ + A +L+M
Sbjct: 71 NLDP-EINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 39 DLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCY 98
D T V F HK L + S + L ++ KD V +++S G + E F Y
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD--VVHLDISNAAGLGQVLE----FMY 82
Query: 99 GINVELTLSNVATIRCVAHFLEMTE 123
+ L+ NV + VA FL+M +
Sbjct: 83 TAKLSLSPENVDDVLAVATFLQMQD 107
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 26 RHATEWPIS-------DVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRV 78
RHA++ ++ D+ +D+ I V F HK L++ SG + + +S +
Sbjct: 14 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVI 73
Query: 79 NLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEM 121
NL E F + F Y + L N+ + A +L+M
Sbjct: 74 NLDP-EINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQM 115
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 39 DLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCY 98
D T V F HK L + S + L ++ KD V +++S G + E F Y
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD--VVHLDISNAAGLGQVLE----FMY 80
Query: 99 GINVELTLSNVATIRCVAHFLEMTE 123
+ L+ NV + VA FL+M +
Sbjct: 81 TAKLSLSPENVDDVLAVATFLQMQD 105
>pdb|1NT4|A Chain A, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
pdb|1NT4|B Chain B, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
Length = 391
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 121 MTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTF 180
+T+D A + +A A A KE+ L L++ L+ +++N + ACKE+ L+ +TF
Sbjct: 131 ITDDSAAFSEQAVA-AMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTF 189
Query: 181 PAKTAQ 186
AK Q
Sbjct: 190 SAKYQQ 195
>pdb|4E4Y|A Chain A, The Crystal Structure Of A Short Chain Dehydrogenase
Family Protein From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 244
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 199 KSLAVLNLDFFQRV----LSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLL 254
K+ V+N+D Q L +K+ KQ I+ +L + S G+ + L+KGS+
Sbjct: 28 KNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAGILIKGSIF 87
Query: 255 DLELQKKQRVI 265
D++++ ++V+
Sbjct: 88 DIDIESIKKVL 98
>pdb|3AGF|A Chain A, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
pdb|3AGF|B Chain B, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
Length = 327
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 113 RCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLI 157
R +A++L+ T +F E +E E YLK+ + +E+I+L+ ++
Sbjct: 178 RALAYYLKET-NFLEAEVEETLEVYLKQCAMESTTEDIALIGLIL 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,656,208
Number of Sequences: 62578
Number of extensions: 509237
Number of successful extensions: 1017
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 9
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)