Query 038941
Match_columns 615
No_of_seqs 320 out of 983
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 8.8E-85 1.9E-89 662.8 23.7 258 194-463 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 2E-29 4.3E-34 284.4 14.5 229 25-311 24-260 (571)
3 PHA02713 hypothetical protein; 100.0 5.9E-28 1.3E-32 272.1 15.5 226 23-310 11-247 (557)
4 PHA03098 kelch-like protein; P 99.9 1.3E-24 2.8E-29 242.9 17.9 216 34-311 6-236 (534)
5 PHA02790 Kelch-like protein; P 99.9 3.1E-25 6.7E-30 245.9 12.7 168 31-234 16-193 (480)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.6E-16 3.5E-21 140.3 8.0 101 33-141 6-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 4E-15 8.7E-20 124.0 6.9 89 39-135 1-90 (90)
8 KOG4350 Uncharacterized conser 99.4 1.4E-12 3.1E-17 137.7 12.0 208 29-298 36-254 (620)
9 KOG2075 Topoisomerase TOP1-int 99.2 3.9E-11 8.5E-16 129.7 12.2 168 33-235 110-294 (521)
10 KOG4591 Uncharacterized conser 98.9 2E-09 4.4E-14 105.3 6.6 163 18-216 43-221 (280)
11 KOG4682 Uncharacterized conser 98.6 1.4E-07 3E-12 100.7 8.7 170 32-233 64-244 (488)
12 KOG0783 Uncharacterized conser 98.1 4.3E-06 9.3E-11 95.6 6.7 65 35-101 556-633 (1267)
13 KOG0783 Uncharacterized conser 98.1 5.3E-06 1.1E-10 94.9 7.1 131 25-164 696-847 (1267)
14 PF11822 DUF3342: Domain of un 97.9 1.3E-05 2.8E-10 84.5 6.1 93 40-142 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.9 0.0014 3E-08 58.5 5.5 79 40-121 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.4 0.002 4.3E-08 56.1 2.5 81 40-123 1-88 (94)
17 PF07707 BACK: BTB And C-termi 96.1 0.001 2.3E-08 57.9 -0.7 69 198-291 34-102 (103)
18 KOG2716 Polymerase delta-inter 96.0 0.022 4.8E-07 58.2 7.7 94 40-142 7-105 (230)
19 KOG3473 RNA polymerase II tran 95.6 0.037 8E-07 49.1 6.4 73 45-120 25-111 (112)
20 KOG2838 Uncharacterized conser 95.2 0.013 2.9E-07 60.6 3.0 80 22-103 115-197 (401)
21 smart00875 BACK BTB And C-term 94.9 0.031 6.6E-07 47.9 4.0 66 198-289 34-99 (101)
22 PF03931 Skp1_POZ: Skp1 family 94.8 0.079 1.7E-06 43.0 5.8 56 40-99 3-59 (62)
23 KOG1724 SCF ubiquitin ligase, 94.3 0.074 1.6E-06 51.7 5.3 89 45-142 13-127 (162)
24 KOG3840 Uncharaterized conserv 85.4 5.4 0.00012 42.5 9.5 109 32-142 90-220 (438)
25 KOG2838 Uncharacterized conser 84.7 0.74 1.6E-05 48.1 2.9 56 48-106 262-330 (401)
26 PF01466 Skp1: Skp1 family, di 80.4 1.9 4.2E-05 36.6 3.4 34 103-142 10-43 (78)
27 KOG0511 Ankyrin repeat protein 78.6 3.2 6.8E-05 45.4 5.0 74 47-123 301-379 (516)
28 KOG2714 SETA binding protein S 76.9 6.6 0.00014 43.6 7.0 82 40-123 13-99 (465)
29 KOG2715 Uncharacterized conser 73.1 22 0.00048 35.0 8.7 95 40-142 23-122 (210)
30 COG5201 SKP1 SCF ubiquitin lig 70.8 15 0.00033 34.6 6.8 90 43-142 8-122 (158)
31 KOG1987 Speckle-type POZ prote 66.4 6.5 0.00014 41.0 4.0 89 46-142 109-201 (297)
32 PF04508 Pox_A_type_inc: Viral 63.4 8.2 0.00018 25.7 2.5 17 540-556 2-18 (23)
33 KOG1665 AFH1-interacting prote 61.1 26 0.00057 36.1 6.9 89 39-136 10-105 (302)
34 KOG0511 Ankyrin repeat protein 60.2 1.5 3.3E-05 47.8 -2.1 66 31-100 141-210 (516)
35 PF01166 TSC22: TSC-22/dip/bun 54.5 21 0.00046 29.0 4.0 33 530-562 12-44 (59)
36 PF14363 AAA_assoc: Domain ass 54.1 7.6 0.00016 34.5 1.6 42 416-458 30-71 (98)
37 PF08581 Tup_N: Tup N-terminal 51.2 23 0.00049 30.6 4.0 26 539-564 39-64 (79)
38 PF04977 DivIC: Septum formati 49.3 48 0.001 27.4 5.7 50 533-582 18-68 (80)
39 COG2433 Uncharacterized conser 38.0 47 0.001 38.7 5.0 167 378-563 298-467 (652)
40 PF10473 CENP-F_leu_zip: Leuci 35.5 71 0.0015 30.6 5.1 37 527-563 75-111 (140)
41 PF14077 WD40_alt: Alternative 34.1 22 0.00048 27.6 1.2 20 541-560 13-32 (48)
42 TIGR01834 PHA_synth_III_E poly 33.9 49 0.0011 35.8 4.1 30 538-567 288-317 (320)
43 PF07407 Seadorna_VP6: Seadorn 32.6 47 0.001 35.9 3.6 32 525-556 32-63 (420)
44 TIGR02894 DNA_bind_RsfA transc 32.5 84 0.0018 30.8 5.1 34 530-563 102-135 (161)
45 PF07989 Microtub_assoc: Micro 32.2 1E+02 0.0022 26.3 5.1 37 527-563 38-74 (75)
46 KOG3713 Voltage-gated K+ chann 32.0 97 0.0021 35.2 6.2 93 35-136 28-134 (477)
47 PHA01750 hypothetical protein 29.2 1.1E+02 0.0025 25.6 4.5 33 531-563 41-73 (75)
48 PF10929 DUF2811: Protein of u 29.2 38 0.00081 27.6 1.8 19 425-443 8-26 (57)
49 KOG4571 Activating transcripti 28.5 67 0.0014 34.2 3.9 39 527-565 250-288 (294)
50 COG3510 CmcI Cephalosporin hyd 25.5 48 0.001 33.7 2.1 34 413-446 183-218 (237)
51 PF11365 DUF3166: Protein of u 22.5 2E+02 0.0044 25.8 5.3 38 528-565 4-41 (96)
52 PF00170 bZIP_1: bZIP transcri 22.3 2.2E+02 0.0048 22.9 5.2 21 541-561 28-48 (64)
53 PRK14127 cell division protein 20.4 1.2E+02 0.0026 27.8 3.5 31 526-556 38-68 (109)
54 PRK04330 hypothetical protein; 20.3 60 0.0013 28.7 1.5 15 393-407 58-72 (88)
55 PRK13922 rod shape-determining 20.3 1.5E+02 0.0032 30.9 4.7 36 527-562 71-109 (276)
56 PF10932 DUF2783: Protein of u 20.3 66 0.0014 26.4 1.6 21 424-447 10-30 (60)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=8.8e-85 Score=662.85 Aligned_cols=258 Identities=49% Similarity=0.802 Sum_probs=227.0
Q ss_pred CcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHHHHHHHHHHHHHHHHhC
Q 038941 194 SDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLL 273 (615)
Q Consensus 194 ~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~~~~~~r~LLEtIv~LL 273 (615)
.+||+||++.|++|+|+|||.+|+++|++++.|+++|++||+|||+++..+................++|.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999999999999999999999853211111111223456789999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhcCChhhHHHHHHHHhhhhhhhhhhhhcccCCCCCCCCCccccHHHHHHHHHHHHcC
Q 038941 274 PTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRIGLQLDQAILEDILIPANSHGSNHSTLYDTDSILRIFSIFLNL 353 (615)
Q Consensus 274 P~~~~~~~vs~~fL~~lLr~a~~l~as~~Cr~~LEkrIg~qLd~AtldDLLiPs~~~~~~~~~lyDvd~V~ril~~Fl~~ 353 (615)
|.+ ++++||+|||+|||+|++++++..||.+||+|||.|||||||||||||+ ++.+ .+|+||||+|+|||++||.+
T Consensus 81 P~e--~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~-~~t~yDVd~V~riv~~Fl~~ 156 (258)
T PF03000_consen 81 PPE--KGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSG-EDTLYDVDLVQRIVEHFLSQ 156 (258)
T ss_pred CCC--CCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCc-ccchhhHHHHHHHHHHHHhc
Confidence 987 9999999999999999999999999999999999999999999999999 4333 35999999999999999998
Q ss_pred CCCCCccccccccccccccCCCCCCCCchhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHhcCcccccccchhHHHHHH
Q 038941 354 DEDDDEDSHMRDESEMIYDFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVSDGLYRAADI 433 (615)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDi 433 (615)
++..+.. ...+....+.++..++.+||||||+||||||+|+||+|+||++|||++|++||++||||||||||
T Consensus 157 ~~~~~~~--------~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~ 228 (258)
T PF03000_consen 157 EEEAGEE--------EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDI 228 (258)
T ss_pred ccccccc--------cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHH
Confidence 6532210 11222233466788999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHhhhhccccccccCCHHHh
Q 038941 434 FLKVHPNIKDSERYRLCKTIDCQKLSQEAC 463 (615)
Q Consensus 434 YLk~Hp~lse~Er~~lC~~mdc~KLS~EAc 463 (615)
|||+||+|||+||++||++|||||||+|||
T Consensus 229 YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 229 YLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=2e-29 Score=284.37 Aligned_cols=229 Identities=20% Similarity=0.281 Sum_probs=195.3
Q ss_pred hhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccc
Q 038941 25 IRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVE 103 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~ 103 (615)
...-+..+.++.+|||+|.|++++|++||.||||+|+|||+||++. +|+++.+|+|+++ .+++++++++|+||+++.
T Consensus 24 l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v--~~~~l~~ll~y~Yt~~i~ 101 (571)
T KOG4441|consen 24 LQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGV--DPETLELLLDYAYTGKLE 101 (571)
T ss_pred HHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecC--CHHHHHHHHHHhhcceEE
Confidence 3444567889999999999999999999999999999999999985 8999999999998 469999999999999999
Q ss_pred cchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhccccccc
Q 038941 104 LTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSGLLKL 176 (615)
Q Consensus 104 it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~~ 176 (615)
|+.+||+.|+.||.+|||++ |++.|++||.+++ +..+|+.+++. .|...|-...
T Consensus 102 i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~-----~L~~~a~~~i-------- 162 (571)
T KOG4441|consen 102 ISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIRRFAELHSCT-----ELLEVADEYI-------- 162 (571)
T ss_pred echHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcH-----HHHHHHHHHH--------
Confidence 99999999999999999998 9999999999987 67888888883 4444442111
Q ss_pred CCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccH
Q 038941 177 DHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDL 256 (615)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~ 256 (615)
..+|. .-|-.|||+.|+.+.+..+|+....+.-+|+.|+++++ +|+. +|...|
T Consensus 163 ~~~F~------------~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~----~Wv~----~d~~~R------- 215 (571)
T KOG4441|consen 163 LQHFA------------EVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAM----RWVK----HDFEER------- 215 (571)
T ss_pred HHHHH------------HHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHH----HHHh----cCHhhH-------
Confidence 11111 12458999999999999999999999999999999999 5554 665444
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 038941 257 ELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRI 311 (615)
Q Consensus 257 ~~~~~~r~LLEtIv~LLP~~~~~~~vs~~fL~~lLr~a~~l~as~~Cr~~LEkrI 311 (615)
+.+...|+++|+ +| .+++.||.+.+....+++.+..|+..|.+-.
T Consensus 216 --~~~~~~ll~~vr--~~------ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 216 --EEHLPALLEAVR--LP------LLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred --HHHHHHHHHhcC--cc------CCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 457889999998 66 6799999999999999999999999996543
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=5.9e-28 Score=272.10 Aligned_cols=226 Identities=18% Similarity=0.202 Sum_probs=178.0
Q ss_pred hhhhhcccccccCCceeEEEEEc-CEEEEecccccccccHHHHHhhcCC-CCC-CcceEEecCCCCCHHHHHHHHHHHhc
Q 038941 23 SSIRHATEWPISDVSSDLTIEVG-ASSFALHKFPLVSRSGRIRKLLLEA-KDS-KVSRVNLSAVPGGAEAFELAAKFCYG 99 (615)
Q Consensus 23 ~~~~~~~~w~~~~~~~DV~l~V~-~~~F~~HK~vLas~S~yfr~mf~~~-~e~-~~~~v~L~~~pGga~~felv~~FcY~ 99 (615)
.+...-++++.++.+|||+|.|+ |++|+|||.||||+|+||++||+++ +|+ .+.+|+|+|+ .+++|+.+++|+||
T Consensus 11 ~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt 88 (557)
T PHA02713 11 RVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYN 88 (557)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcC
Confidence 45566677888899999999998 8999999999999999999999986 655 3678999999 57999999999999
Q ss_pred CccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhccc
Q 038941 100 INVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSG 172 (615)
Q Consensus 100 ~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~ 172 (615)
++ ||.+||+.|+.||++||++. |++.|++||.+.+ +..+|+.+.+. .|..+|..-.
T Consensus 89 ~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~-----~L~~~a~~~i---- 151 (557)
T PHA02713 89 RH--ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTNHDTCIYMYHRLYEMSHI-----PIVKYIKRML---- 151 (557)
T ss_pred CC--CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCccchHHHHHHHHhccch-----HHHHHHHHHH----
Confidence 97 79999999999999999998 9999999999988 44445555542 1333321111
Q ss_pred ccccCCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHhhcCCCccCCcccccc
Q 038941 173 LLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVK-SKGLKQDMISKILINYAHNSLQGLVVRDPQLVKG 251 (615)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~-~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~ 251 (615)
..+|. .+ .-.|||..|+.+.+..+|+... .+..+|+.|++|++ +|+. |++..|
T Consensus 152 ----~~~f~---------~v---~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~----~W~~----~d~~~r-- 205 (557)
T PHA02713 152 ----MSNIP---------TL---ITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILL----KWLE----YNYITE-- 205 (557)
T ss_pred ----HHHHH---------HH---hCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHH----HHHh----cCHHHH--
Confidence 01111 11 1268999999999999999977 57789999999999 6665 665433
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHhhcCChhhHHHHHHH
Q 038941 252 SLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERR 310 (615)
Q Consensus 252 ~~~~~~~~~~~r~LLEtIv~LLP~~~~~~~vs~~fL~~lLr~a~~l~as~~Cr~~LEkr 310 (615)
.+...||++|+ || .++.++++ .+....+++.++.|+..|++.
T Consensus 206 --------~~~~~ll~~VR--~~------~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 206 --------EQLLCILSCID--IQ------NLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred --------HHHhhhHhhhh--Hh------hcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 23458999997 55 45777877 666778889999999998763
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=242.86 Aligned_cols=216 Identities=17% Similarity=0.196 Sum_probs=173.3
Q ss_pred cCCceeEEEEE--cCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhhhhh
Q 038941 34 SDVSSDLTIEV--GASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVAT 111 (615)
Q Consensus 34 ~~~~~DV~l~V--~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~~ 111 (615)
++.+|||+|.| +|++|++||.+|+++|+||++||++.-. +.+|+|++ + +++|+.+++|+|||+++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 68999999998 9999999999999999999999987522 46799988 4 6999999999999999999999999
Q ss_pred HHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhcccccccCCCCCccc
Q 038941 112 IRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFPAKT 184 (615)
Q Consensus 112 L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~~~~~~~~~~ 184 (615)
|+.||++||+++ |+..|++||.+.+ ++.+|+.+++ +.|...|-.-. ..+|.
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~-----~~L~~~~~~~i--------~~nf~--- 138 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKIIDDNNCIDIYRFSFFYGC-----KKLYSAAYNYI--------RNNIE--- 138 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhCCHhHHHHHHHHHHHcCc-----HHHHHHHHHHH--------HHHHH---
Confidence 999999999998 9999999999987 7889999987 33333321100 00010
Q ss_pred ccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHHHHHHHHH
Q 038941 185 AQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRV 264 (615)
Q Consensus 185 ~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~~~~~~r~ 264 (615)
.. .. .+||..|+.+.+..+|++...+..+|+.|+++++ +|+. +++..| ..+...
T Consensus 139 ------~v-~~--~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~----~W~~----~~~~~r---------~~~~~~ 192 (534)
T PHA03098 139 ------LI-YN--DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIII----KWLT----SKKNNK---------YKDICL 192 (534)
T ss_pred ------HH-hc--CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHH----HHHh----cChhhh---------HhHHHH
Confidence 01 11 5789999999999999999999999999999999 5654 555444 346678
Q ss_pred HHHHHHHhCCCCCCCCCCChHHHHHHHH------HHHhhcCChhhHHHHHHHH
Q 038941 265 IVEAIVGLLPTQSRKSPVPMAFLSSLLK------TAIAASATTSCRSDLERRI 311 (615)
Q Consensus 265 LLEtIv~LLP~~~~~~~vs~~fL~~lLr------~a~~l~as~~Cr~~LEkrI 311 (615)
||++|+ +| .++..+|..+.+ ...++ .+..|+..+....
T Consensus 193 ll~~vR--~~------~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 193 ILKVLR--IT------FLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred HHhhcc--cc------ccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 999998 76 679999998876 33444 7778888776544
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=3.1e-25 Score=245.94 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=136.5
Q ss_pred ccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEec--CCCCCHHHHHHHHHHHhcCccccchh
Q 038941 31 WPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLS--AVPGGAEAFELAAKFCYGINVELTLS 107 (615)
Q Consensus 31 w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~--~~pGga~~felv~~FcY~~~i~it~~ 107 (615)
-+.++.+|||++ |.|.+|+|||.||||+|+|||+||+++ +|++. +|.+. |+ .+++|+.+++|+|||+|.||.+
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v--~~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDL--DIHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCc--CHHHHHHHHHhheeeeEEEecc
Confidence 356799999877 555699999999999999999999975 77754 56653 78 5799999999999999999999
Q ss_pred hhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhcccccccCCCC
Q 038941 108 NVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTF 180 (615)
Q Consensus 108 NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~~~~~~ 180 (615)
||+.|+.||.+|||++ |++.|++||.+.+ +..+|+.|+| +.|..+|-.-.. .+|
T Consensus 92 nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~-----~~L~~~a~~fi~--------~nF 152 (480)
T PHA02790 92 NVVNLLRASILTSVEF------IIYTCINFILRDFRKEYCVECYMMGIEYGL-----SNLLCHTKDFIA--------KHF 152 (480)
T ss_pred cHHHHHHHHHHhChHH------HHHHHHHHHHhhCCcchHHHHHHHHHHhCH-----HHHHHHHHHHHH--------HhH
Confidence 9999999999999998 9999999999988 8999999998 566666632211 111
Q ss_pred CcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 038941 181 PAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYA 234 (615)
Q Consensus 181 ~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~Ya 234 (615)
. .+ ...-+|||..|++ ..+|++...+..+|+.|++|++.|+
T Consensus 153 ~---------~v-~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl 193 (480)
T PHA02790 153 L---------EL-EDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWY 193 (480)
T ss_pred H---------HH-hcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHH
Confidence 1 11 1101489999997 5699999999999999999999444
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=1.6e-16 Score=140.32 Aligned_cols=101 Identities=35% Similarity=0.474 Sum_probs=89.2
Q ss_pred ccCCceeEEEEEc-CEEEEecccccccccHHHHHhhcCC--CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccc-hhh
Q 038941 33 ISDVSSDLTIEVG-ASSFALHKFPLVSRSGRIRKLLLEA--KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELT-LSN 108 (615)
Q Consensus 33 ~~~~~~DV~l~V~-~~~F~~HK~vLas~S~yfr~mf~~~--~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it-~~N 108 (615)
.++.+||++|.|+ +.+|++||.+|+++|+||++||.+. .+....+|.+++++ +++|+.+++|+|++.+.++ .+|
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~ 83 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDEN 83 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHH
Confidence 4578999999999 8999999999999999999999986 34444578899995 7999999999999999999 999
Q ss_pred hhhHHHhhhhcccchhhhhchHHHHHHHHHHHh
Q 038941 109 VATIRCVAHFLEMTEDFAEKNLEARAEAYLKEM 141 (615)
Q Consensus 109 V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 141 (615)
+..++.+|++|+|++ |...|+.||.+.
T Consensus 84 ~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999997 999999999864
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.57 E-value=4e-15 Score=124.03 Aligned_cols=89 Identities=30% Similarity=0.413 Sum_probs=80.8
Q ss_pred eEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhhhhhHHHhhh
Q 038941 39 DLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAH 117 (615)
Q Consensus 39 DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~~L~~AA~ 117 (615)
||++.|||..|++||.+|+++|+||++||.+. .+.....+.+.++ .+++|+.+++|+||+++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCC--CHHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999875 4445678899887 57999999999999999999999999999999
Q ss_pred hcccchhhhhchHHHHHH
Q 038941 118 FLEMTEDFAEKNLEARAE 135 (615)
Q Consensus 118 ~Lqm~e~~~~~NL~~~ce 135 (615)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999997 787774
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=137.71 Aligned_cols=208 Identities=21% Similarity=0.256 Sum_probs=145.0
Q ss_pred ccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchh
Q 038941 29 TEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS 107 (615)
Q Consensus 29 ~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~ 107 (615)
.+-.......||++.|++..|++||.+||++|.|||+|+-++ .|+.+..|.|.+- .+++|..+++|+|||++.++..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceecccc
Confidence 334566788999999999999999999999999999998875 8888888888865 5899999999999999998764
Q ss_pred h---hhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhcccccccC
Q 038941 108 N---VATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSGLLKLD 177 (615)
Q Consensus 108 N---V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~~~ 177 (615)
. ....+.-|...++.+ |-.+..+||.+.+ ++..|--|++ ..|...+|.. ++
T Consensus 114 ~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL~~~NvCmifdaA~ly~l-----~~Lt~~C~mf--------mD 174 (620)
T KOG4350|consen 114 EEDILLDYLSLAHRYGFIQ------LETAISEYLKEILKNENVCMIFDAAYLYQL-----TDLTDYCMMF--------MD 174 (620)
T ss_pred hHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHcccceeeeeeHHHHhcc-----hHHHHHHHHH--------Hh
Confidence 3 344455555555555 9999999999987 4555555555 2333333211 00
Q ss_pred CCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHH
Q 038941 178 HTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLE 257 (615)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~ 257 (615)
++ . .+. --.+-|..|+.+.++.++..+.- -..|..||-|+. +|-. +++
T Consensus 175 -----rn---A-~~l---L~~~sFn~LSk~sL~e~l~RDsF-fApE~~IFlAv~----~W~~----~Ns----------- 222 (620)
T KOG4350|consen 175 -----RN---A-DQL---LEDPSFNRLSKDSLKELLARDSF-FAPELKIFLAVR----SWHQ----NNS----------- 222 (620)
T ss_pred -----cC---H-Hhh---hcCcchhhhhHHHHHHHHhhhcc-cchHHHHHHHHH----HHHh----cCc-----------
Confidence 00 0 000 11355778999998888875432 236779999999 5543 333
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHhhc
Q 038941 258 LQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAAS 298 (615)
Q Consensus 258 ~~~~~r~LLEtIv~LLP~~~~~~~vs~~fL~~lLr~a~~l~ 298 (615)
......|+|.|+ || +++-.-|+..+|-.-++.
T Consensus 223 -ke~~k~~~~~VR--LP------Lm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 223 -KEASKVLLELVR--LP------LMTLTELLNVVRPSGLLS 254 (620)
T ss_pred -hhhHHHHHHHHh--hh------hccHHHHHhccCcccCcC
Confidence 124567888888 77 456666777766655554
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.25 E-value=3.9e-11 Score=129.66 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=132.3
Q ss_pred ccCCceeEEEEEcC-----EEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccch
Q 038941 33 ISDVSSDLTIEVGA-----SSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTL 106 (615)
Q Consensus 33 ~~~~~~DV~l~V~~-----~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~ 106 (615)
.+...+||.+.||+ +.||+||++|+..|.-|.+||.++ .+....+|.++|+ .+.+|...++|+|+-.+.+.+
T Consensus 110 ~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~ 187 (521)
T KOG2075|consen 110 NNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAA 187 (521)
T ss_pred cCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhH
Confidence 55889999999973 799999999999999999999986 4444678999999 479999999999999999999
Q ss_pred hhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh--------h---hhhhhhhCcHHHHHHHHHHHhhhhhhcccccc
Q 038941 107 SNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV--------L---LPLSEEISLVNRLINAIANNACKEQLTSGLLK 175 (615)
Q Consensus 107 ~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l--------l---lp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~ 175 (615)
+||..++-||.-.-.+. |...|.+||+..+ | ..+.++-.+.++|++.|....- +.
T Consensus 188 dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~-~a------- 253 (521)
T KOG2075|consen 188 DTVITTLYAAKKYLVPA------LERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFE-DA------- 253 (521)
T ss_pred HHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHH-hh-------
Confidence 99999999997766765 9999999999977 1 2345677888999888765441 11
Q ss_pred cCCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 038941 176 LDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAH 235 (615)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~Yak 235 (615)
...+ ||-|+-.+ .|.|+.|+....++ ++|-.+++|+..|++
T Consensus 254 ----------------l~~E-Gf~did~~-~dt~~evl~r~~l~-~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 254 ----------------LTPE-GFCDIDST-RDTYEEVLRRDTLE-AREFRLFEAALKWAE 294 (521)
T ss_pred ----------------hCcc-ceeehhhH-HHHHHHHHhhcccc-hhHHHHHHHHHhhcc
Confidence 1012 34444444 88888888765543 468899999995543
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.90 E-value=2e-09 Score=105.30 Aligned_cols=163 Identities=18% Similarity=0.254 Sum_probs=122.9
Q ss_pred CCCCchhhhhccc----ccccCCceeEEEEEc---CEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHH
Q 038941 18 SFRPSSSIRHATE----WPISDVSSDLTIEVG---ASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAF 90 (615)
Q Consensus 18 ~~~~~~~~~~~~~----w~~~~~~~DV~l~V~---~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~f 90 (615)
.|.|++|..|--+ -.....++||++.++ +..+++||+|||++|++.+ |.+..+.+..+..+.|. ++++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDa--d~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDA--DFEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhccccc--CHHHH
Confidence 5778999887544 456789999999998 4789999999999999874 45544444556778888 57999
Q ss_pred HHHHHHHhcCccccchhhhh--hHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHH
Q 038941 91 ELAAKFCYGINVELTLSNVA--TIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIA 161 (615)
Q Consensus 91 elv~~FcY~~~i~it~~NV~--~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa 161 (615)
..+++++||-+|++-.+.+. .|...|.-+|+.- |.++|+.=|...+ +..+||+++.- . .
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~-q-----L 186 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALLHVDNCIKFYEFAEELNAR-Q-----L 186 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHhhHhhHHHHHHHHHHhhHH-H-----H
Confidence 99999999999998776654 5788899999987 9999999887766 78888888751 1 1
Q ss_pred HHhhhhhhcccccccCCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHH
Q 038941 162 NNACKEQLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAV 216 (615)
Q Consensus 162 ~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am 216 (615)
...|.+..+..|+. ---+||+.+++.++-++|..-
T Consensus 187 ~n~~~eiIA~~W~d--------------------L~~a~FaqMs~aLLYklId~k 221 (280)
T KOG4591|consen 187 MNVAAEIIAGAWDD--------------------LGKADFAQMSAALLYKLIDGK 221 (280)
T ss_pred HHHHHHHHHhhccc--------------------cChHHHHhccHHHHHHHHcCC
Confidence 12233333333421 125788999999988888653
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=100.70 Aligned_cols=170 Identities=17% Similarity=0.206 Sum_probs=131.1
Q ss_pred cccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEE--ecCCCCCHHHHHHHHHHHhcCccccchhh
Q 038941 32 PISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVN--LSAVPGGAEAFELAAKFCYGINVELTLSN 108 (615)
Q Consensus 32 ~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~--L~~~pGga~~felv~~FcY~~~i~it~~N 108 (615)
...|.-+||+|.+-|..-++||.-| .-|+||.+||.+. +|+....|+ |+|=.-+..+|..++.=.|..+|+|..+-
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHH
Confidence 3568899999999999999999877 6699999999986 777665554 44433368999999999999999999999
Q ss_pred hhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhcccccccCCCCC
Q 038941 109 VATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTFP 181 (615)
Q Consensus 109 V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~~~~~~~ 181 (615)
|..++.||.+||++. |+++|.+-+.+.+ ....+..||+ +.+..+. -. |.-. ++.
T Consensus 143 v~gvlAaA~~lqldg------l~qrC~evMie~lspkta~~yYea~ckYgl-----e~vk~kc-~e-----wl~~--nl~ 203 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDG------LIQRCGEVMIETLSPKTACGYYEAACKYGL-----ESVKKKC-LE-----WLLN--NLM 203 (488)
T ss_pred HHHHHHHHHHHHHhh------HHHHHHHHHHHhcChhhhhHhhhhhhhhhh-----HHHHHHH-HH-----HHHH--hhH
Confidence 999999999999997 9999999999887 6777888887 4444443 11 1000 000
Q ss_pred cccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCC-hhHHHHHHHHH
Q 038941 182 AKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLK-QDMISKILINY 233 (615)
Q Consensus 182 ~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~-ee~V~~al~~Y 233 (615)
.... ..-|-.++++++..|+.+-.+-.+. |=.++..+..|
T Consensus 204 ---------~i~~---~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~W 244 (488)
T KOG4682|consen 204 ---------TIQN---VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKW 244 (488)
T ss_pred ---------hhhh---HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHH
Confidence 0000 1245679999999999988877776 66888888855
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.10 E-value=4.3e-06 Score=95.62 Aligned_cols=65 Identities=37% Similarity=0.521 Sum_probs=55.0
Q ss_pred CCceeEEEEEcCEEEEecccccccccHHHHHhhcCCC---C----------CCcceEEecCCCCCHHHHHHHHHHHhcCc
Q 038941 35 DVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAK---D----------SKVSRVNLSAVPGGAEAFELAAKFCYGIN 101 (615)
Q Consensus 35 ~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~---e----------~~~~~v~L~~~pGga~~felv~~FcY~~~ 101 (615)
+-..|||++||+.-|++||++|+++|++||++|.... + +..++|.+.++|| .+||+++.|+||..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc
Confidence 6678999999999999999999999999999997531 1 1234566889985 99999999999975
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.09 E-value=5.3e-06 Score=94.93 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=94.3
Q ss_pred hhhccccccc----CCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHh-
Q 038941 25 IRHATEWPIS----DVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCY- 98 (615)
Q Consensus 25 ~~~~~~w~~~----~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY- 98 (615)
+.-++-...+ -..|||++. +|+.|+|||.+|++++.||..||... .|+.. |...+.|-.++.++.|++|.|
T Consensus 696 ~~~~N~l~lsdh~e~~d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs 772 (1267)
T KOG0783|consen 696 QLYNNFLVLSDHEETMDTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYS 772 (1267)
T ss_pred HHhcCeeEecCCccceeEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHc
Confidence 3444444433 333444444 78999999999999999999999864 44443 555556657899999999999
Q ss_pred cCccccc-----hhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhC---cHHHHHHHHHHH
Q 038941 99 GINVELT-----LSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEIS---LVNRLINAIANN 163 (615)
Q Consensus 99 ~~~i~it-----~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~---iv~rCidsLa~k 163 (615)
+-++++- .+=+..++..|+.|=+++ |.+.||.-|.+.+ |+.||-.|+ +-.+|+|.|...
T Consensus 773 ~d~~~~~k~~~~~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N 846 (1267)
T KOG0783|consen 773 DDKVELFKDLKESDFMFEILSIADQLLILE------LKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHN 846 (1267)
T ss_pred cchHHHHhccchhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4444331 223567788899998998 9999999998877 778887775 446888876544
Q ss_pred h
Q 038941 164 A 164 (615)
Q Consensus 164 a 164 (615)
.
T Consensus 847 ~ 847 (1267)
T KOG0783|consen 847 I 847 (1267)
T ss_pred H
Confidence 3
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.94 E-value=1.3e-05 Score=84.54 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=77.6
Q ss_pred EEEEEcC------EEEEecccccccccHHHHHhhcC----CCCCCcceEEec-CCCCCHHHHHHHHHHHhcCccccchhh
Q 038941 40 LTIEVGA------SSFALHKFPLVSRSGRIRKLLLE----AKDSKVSRVNLS-AVPGGAEAFELAAKFCYGINVELTLSN 108 (615)
Q Consensus 40 V~l~V~~------~~F~~HK~vLas~S~yfr~mf~~----~~e~~~~~v~L~-~~pGga~~felv~~FcY~~~i~it~~N 108 (615)
|+|+|-| +.|.|.+.+|.+.=+||+..+.. ..+...-.|-++ |+ .+|+-+++|+++....||++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666632 58999999999999999999964 222233334444 77 799999999999999999999
Q ss_pred hhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 109 VATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 109 V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
|+.++-.++||||++ |++.|-.|+...+
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999998 9999999998766
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.95 E-value=0.0014 Score=58.47 Aligned_cols=79 Identities=11% Similarity=0.271 Sum_probs=60.8
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCCC--CCCcceEEecCCCCCHHHHHHHHHHHhcCc-----------c---
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEAK--DSKVSRVNLSAVPGGAEAFELAAKFCYGIN-----------V--- 102 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~--e~~~~~v~L~~~pGga~~felv~~FcY~~~-----------i--- 102 (615)
|+|.- +|+.|.+.+.+. ..|+-++.|+.+.. +.....|.|++|+| .+++.|++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45554 789999999865 68999999998642 12225799999975 99999999998321 1
Q ss_pred -----ccchhhhhhHHHhhhhccc
Q 038941 103 -----ELTLSNVATIRCVAHFLEM 121 (615)
Q Consensus 103 -----~it~~NV~~L~~AA~~Lqm 121 (615)
.+..+++..|+.||+||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1677789999999999985
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.42 E-value=0.002 Score=56.09 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=60.6
Q ss_pred EEEEEcCEEEEecccccc-cccHHHHHhhcCC----CCCCcceEEecCCCCCHHHHHHHHHHHhc-Cccccc-hhhhhhH
Q 038941 40 LTIEVGASSFALHKFPLV-SRSGRIRKLLLEA----KDSKVSRVNLSAVPGGAEAFELAAKFCYG-INVELT-LSNVATI 112 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLa-s~S~yfr~mf~~~----~e~~~~~v~L~~~pGga~~felv~~FcY~-~~i~it-~~NV~~L 112 (615)
|+|.|||+.|.+-+..|. -...+|.+|+... .......+-| |= .|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DR--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DR--DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-cc--ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4567999999853 2233345555 33 57999999999999 777764 6778889
Q ss_pred HHhhhhcccch
Q 038941 113 RCVAHFLEMTE 123 (615)
Q Consensus 113 ~~AA~~Lqm~e 123 (615)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999987
No 17
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.15 E-value=0.001 Score=57.88 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=49.3
Q ss_pred ccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHHHHHHHHHHHHHHHHhCCCCC
Q 038941 198 GKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQS 277 (615)
Q Consensus 198 ~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~~~~~~r~LLEtIv~LLP~~~ 277 (615)
.++|..||.+.+..+++....+..+|..|+++++ +|+. +++..| ..+...|++.|+ +|
T Consensus 34 ~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~----~W~~----~~~~~r---------~~~~~~Ll~~iR--~~--- 91 (103)
T PF07707_consen 34 SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVL----RWLK----HNPENR---------EEHLKELLSCIR--FP--- 91 (103)
T ss_dssp SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHH----HHHH----CTHHHH---------TTTHHHHHCCCH--HH---
T ss_pred chhhhcCCHHHHHHHHhccccccccHHHHHHHHH----HHHH----hCHHHH---------HHHHHHHHHhCC--cc---
Confidence 5689999999999999998888889999999999 5553 554433 235678888886 44
Q ss_pred CCCCCChHHHHHHH
Q 038941 278 RKSPVPMAFLSSLL 291 (615)
Q Consensus 278 ~~~~vs~~fL~~lL 291 (615)
.+|.++|.+.+
T Consensus 92 ---~l~~~~L~~~v 102 (103)
T PF07707_consen 92 ---LLSPEELQNVV 102 (103)
T ss_dssp ---CT-HHHHHHCC
T ss_pred ---cCCHHHHHHHH
Confidence 46788887643
No 18
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.022 Score=58.18 Aligned_cols=94 Identities=15% Similarity=0.247 Sum_probs=75.7
Q ss_pred EEEEEcCEEEEecccccccccHHHHHhhcCCC--CCCc-ceEEecCCCCCHHHHHHHHHHHhcCcccc--chhhhhhHHH
Q 038941 40 LTIEVGASSFALHKFPLVSRSGRIRKLLLEAK--DSKV-SRVNLSAVPGGAEAFELAAKFCYGINVEL--TLSNVATIRC 114 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~--e~~~-~~v~L~~~pGga~~felv~~FcY~~~i~i--t~~NV~~L~~ 114 (615)
|.+.|||..|...|.-|.-..|||+.|+...- +.+. .-|-|. = .|.=|++|++|+=.|.+.| +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-R--SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-R--SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-C--ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999998752 2222 224433 3 4699999999999777765 5677889999
Q ss_pred hhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 115 VAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 115 AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999998 9999998777654
No 19
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.57 E-value=0.037 Score=49.14 Aligned_cols=73 Identities=18% Similarity=0.346 Sum_probs=59.8
Q ss_pred cCEEEEecccccccccHHHHHhhcCC---CCCCcceEEecCCCCCHHHHHHHHHHH-----hcC------ccccchhhhh
Q 038941 45 GASSFALHKFPLVSRSGRIRKLLLEA---KDSKVSRVNLSAVPGGAEAFELAAKFC-----YGI------NVELTLSNVA 110 (615)
Q Consensus 45 ~~~~F~~HK~vLas~S~yfr~mf~~~---~e~~~~~v~L~~~pGga~~felv~~Fc-----Y~~------~i~it~~NV~ 110 (615)
+|..|-+-|. .|--||-+|+|+.+. .+....+|.+.+|| +..++.+..|. |++ +++|-++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5689988665 677799999999963 55666789999997 59999998875 443 3688999999
Q ss_pred hHHHhhhhcc
Q 038941 111 TIRCVAHFLE 120 (615)
Q Consensus 111 ~L~~AA~~Lq 120 (615)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999997
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.22 E-value=0.013 Score=60.60 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=63.5
Q ss_pred chhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCC---cceEEecCCCCCHHHHHHHHHHHh
Q 038941 22 SSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSK---VSRVNLSAVPGGAEAFELAAKFCY 98 (615)
Q Consensus 22 ~~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~---~~~v~L~~~pGga~~felv~~FcY 98 (615)
.+|.++-..-+......||-|......|++||+.|+++|++|+-+...+.+.. ...+..-+|. -++|+..+.+.|
T Consensus 115 ~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~ 192 (401)
T KOG2838|consen 115 NSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLI 192 (401)
T ss_pred hHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHH
Confidence 45666655556667888999999999999999999999999999887654332 3456677884 589999999999
Q ss_pred cCccc
Q 038941 99 GINVE 103 (615)
Q Consensus 99 ~~~i~ 103 (615)
+|+.-
T Consensus 193 tgEfg 197 (401)
T KOG2838|consen 193 TGEFG 197 (401)
T ss_pred hcccc
Confidence 98753
No 21
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=94.90 E-value=0.031 Score=47.93 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=50.0
Q ss_pred ccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHHHHHHHHHHHHHHHHhCCCCC
Q 038941 198 GKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQKKQRVIVEAIVGLLPTQS 277 (615)
Q Consensus 198 ~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~~~~~~r~LLEtIv~LLP~~~ 277 (615)
.++|..||.+.+..+|.+...+...|..|+++++ +|+. +++.. ..+...++++|+ +|
T Consensus 34 ~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~----~W~~----~~~~~----------~~~~~~ll~~ir--~~--- 90 (101)
T smart00875 34 SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVL----RWVK----HDPER----------RRHLPELLSHVR--FP--- 90 (101)
T ss_pred CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHH----HHHH----CCHHH----------HHHHHHHHHhCC--CC---
Confidence 3789999999999999999888778999999999 5554 43311 125667888887 55
Q ss_pred CCCCCChHHHHH
Q 038941 278 RKSPVPMAFLSS 289 (615)
Q Consensus 278 ~~~~vs~~fL~~ 289 (615)
.+|..+|.+
T Consensus 91 ---~~~~~~l~~ 99 (101)
T smart00875 91 ---LLSPEYLLE 99 (101)
T ss_pred ---CCCHHHHHh
Confidence 567777754
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.76 E-value=0.079 Score=43.02 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=43.5
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhc
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYG 99 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~ 99 (615)
|+|.- +|+.|.+.+.+. -.|+.++.|+.+...... .|.|++|+ +.+++.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHHh
Confidence 45554 689999988755 589999999987533332 79999996 5999999999983
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.074 Score=51.69 Aligned_cols=89 Identities=12% Similarity=0.231 Sum_probs=67.7
Q ss_pred cCEEEEecccccccccHHHHHhhcCCC-CCCcceEEecCCCCCHHHHHHHHHHHhcCc----------------------
Q 038941 45 GASSFALHKFPLVSRSGRIRKLLLEAK-DSKVSRVNLSAVPGGAEAFELAAKFCYGIN---------------------- 101 (615)
Q Consensus 45 ~~~~F~~HK~vLas~S~yfr~mf~~~~-e~~~~~v~L~~~pGga~~felv~~FcY~~~---------------------- 101 (615)
+|+.|.+-..+ |..|.-++.++.+.. ......|-|+.|. +.+|.+|+.|||--+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 78899987764 577999999887641 1111468888995 499999999999633
Q ss_pred ---cccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 102 ---VELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 102 ---i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
+.+...++..|.-||.||++.. |+..||......+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHH
Confidence 1244568899999999999996 8888888776654
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.36 E-value=5.4 Score=42.51 Aligned_cols=109 Identities=9% Similarity=0.194 Sum_probs=79.8
Q ss_pred cccCCceeEEEEEcCEEEEecccccccccH-HHHHhhcCC----CCCCcceEEec-CCCCCHHHHHHHHHHHhcCccccc
Q 038941 32 PISDVSSDLTIEVGASSFALHKFPLVSRSG-RIRKLLLEA----KDSKVSRVNLS-AVPGGAEAFELAAKFCYGINVELT 105 (615)
Q Consensus 32 ~~~~~~~DV~l~V~~~~F~~HK~vLas~S~-yfr~mf~~~----~e~~~~~v~L~-~~pGga~~felv~~FcY~~~i~it 105 (615)
+..+-.--+++.|++..|-.-+++|-+.-. -+-.||... ...+..+.++. |+ +...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 555666778999999999999999877633 234566543 22334566664 67 68999999999888888753
Q ss_pred h-hhhhhHHHhhhhcccchhh---------------hhchHHHHHHHHHHHhh
Q 038941 106 L-SNVATIRCVAHFLEMTEDF---------------AEKNLEARAEAYLKEMV 142 (615)
Q Consensus 106 ~-~NV~~L~~AA~~Lqm~e~~---------------~~~NL~~~ce~FL~~~l 142 (615)
+ -.|-.|+.|.+||-++=++ +.+.-.++.+.||++.+
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~I 220 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEII 220 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3 4678899999999876443 33445778889998876
No 25
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.69 E-value=0.74 Score=48.11 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=40.2
Q ss_pred EEEecccccccccHHHHHhhcC----CCC------CCcceEEecC--CCCCHHHHHH-HHHHHhcCccccch
Q 038941 48 SFALHKFPLVSRSGRIRKLLLE----AKD------SKVSRVNLSA--VPGGAEAFEL-AAKFCYGINVELTL 106 (615)
Q Consensus 48 ~F~~HK~vLas~S~yfr~mf~~----~~e------~~~~~v~L~~--~pGga~~fel-v~~FcY~~~i~it~ 106 (615)
.+.+||.+.+++|++||.++.. ..| ....+|.+.. || .+|.. ++.|.||-.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchhh
Confidence 5789999999999999998753 212 2345677764 44 66654 56788998887754
No 26
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=80.40 E-value=1.9 Score=36.57 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=27.9
Q ss_pred ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
.++...+..|+.||.||++.. |++.|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 347789999999999999997 9999999998776
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=78.57 E-value=3.2 Score=45.41 Aligned_cols=74 Identities=11% Similarity=0.210 Sum_probs=57.1
Q ss_pred EEEEecccccccccHHHHHhhcCC-CCCC-cc---eEEecCCCCCHHHHHHHHHHHhcCccccchhhhhhHHHhhhhccc
Q 038941 47 SSFALHKFPLVSRSGRIRKLLLEA-KDSK-VS---RVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEM 121 (615)
Q Consensus 47 ~~F~~HK~vLas~S~yfr~mf~~~-~e~~-~~---~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~~L~~AA~~Lqm 121 (615)
..+|+|.+++ +++.||+.||++. .|+. .. ...|+.+ .....|.+++|.|+-+-+|-++-...++--|..|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999988 5788999999986 4422 22 2333444 357899999999999999999988888888888877
Q ss_pred ch
Q 038941 122 TE 123 (615)
Q Consensus 122 ~e 123 (615)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 28
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=76.89 E-value=6.6 Score=43.64 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=60.6
Q ss_pred EEEEEcCEEEEeccccccccc--HHHHHhhcCC--CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhhhhhHHH-
Q 038941 40 LTIEVGASSFALHKFPLVSRS--GRIRKLLLEA--KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRC- 114 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLas~S--~yfr~mf~~~--~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~~L~~- 114 (615)
|.+.|||+.|.--+.-|+... .+|-+|+++. .........+-|= +|+.|..+++|.-|+++.+..--...|+-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDR--DPdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDR--DPDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecC--CchHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 568999999999999887765 6899999753 2222222233233 57999999999999999995544444555
Q ss_pred hhhhcccch
Q 038941 115 VAHFLEMTE 123 (615)
Q Consensus 115 AA~~Lqm~e 123 (615)
=|.|.+++.
T Consensus 91 EA~fYGl~~ 99 (465)
T KOG2714|consen 91 EAMFYGLTP 99 (465)
T ss_pred hhhhcCcHH
Confidence 899999987
No 29
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.12 E-value=22 Score=35.03 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=69.2
Q ss_pred EEEEEcCEEEEeccccccccc-HHHHHhhcCC----CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhhhhhHHH
Q 038941 40 LTIEVGASSFALHKFPLVSRS-GRIRKLLLEA----KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVATIRC 114 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLas~S-~yfr~mf~~~----~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~~L~~ 114 (615)
|-+.|||..|.--|.-|.--+ .++.+++... .+.+...--|-|= +|.-|.-|++|.--|++.|+.--=..++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 567899999999999998887 5555655543 2223333334333 46899999999999999999966666899
Q ss_pred hhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 115 VAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 115 AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
-|+|...+. |+....+-+....
T Consensus 101 EAefyn~~~------li~likd~i~dRd 122 (210)
T KOG2715|consen 101 EAEFYNDPS------LIQLIKDRIQDRD 122 (210)
T ss_pred hhhccCChH------HHHHHHHHHHHHh
Confidence 999999886 7766655555433
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.79 E-value=15 Score=34.61 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=64.1
Q ss_pred EEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCc---------c-----------
Q 038941 43 EVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGIN---------V----------- 102 (615)
Q Consensus 43 ~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~---------i----------- 102 (615)
..+|+.|.+.+. .|-+|=.++.|+....+.+. .+.++.+ .+..|..+.+||---+ +
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~w 83 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFW 83 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhccCCccHH
Confidence 357899999876 68889999999886544432 2445566 4689999999996311 1
Q ss_pred -----ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 103 -----ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 103 -----~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
++...-...+.-||.||++.. |++.||.-..+.+
T Consensus 84 dr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 84 DRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 122334566778999999997 8888888777665
No 31
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.42 E-value=6.5 Score=40.99 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=66.4
Q ss_pred CEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhhhh---hHHHhhhhccc
Q 038941 46 ASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVA---TIRCVAHFLEM 121 (615)
Q Consensus 46 ~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~---~L~~AA~~Lqm 121 (615)
+..+..|+.+++++|.-|+.|+... .+.....+.+.+. +++.|+.+..|.|...-.-+..++. .++++|.-.+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999998864 2222334466666 4689999999999865444555554 77777777666
Q ss_pred chhhhhchHHHHHHHHHHHhh
Q 038941 122 TEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 122 ~e~~~~~NL~~~ce~FL~~~l 142 (615)
.. |...|...|.+.+
T Consensus 187 ~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 RH------LKLACMPVLLSLI 201 (297)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 65 9999999998765
No 32
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=63.37 E-value=8.2 Score=25.72 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038941 540 EVARMRMRLTDLEKDHV 556 (615)
Q Consensus 540 el~~m~~rv~eLEk~~~ 556 (615)
||++.|.|+++||++..
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78999999999998864
No 33
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=61.13 E-value=26 Score=36.07 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=66.9
Q ss_pred eEEEEEcCEEEEecccccccc--cHHHHHhhcCC----CCCCcceEEecCCCCCHHHHHHHHHHHhcCccc-cchhhhhh
Q 038941 39 DLTIEVGASSFALHKFPLVSR--SGRIRKLLLEA----KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVE-LTLSNVAT 111 (615)
Q Consensus 39 DV~l~V~~~~F~~HK~vLas~--S~yfr~mf~~~----~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~-it~~NV~~ 111 (615)
=|.+.+||+.|.--..-|.-+ =.-+-+||.+. .+.+..-+-| |= +|.-||-|+.|.-.|.|. .+.-|+..
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DR--sp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DR--SPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-cc--CchhhHHHHHHHhcCceeecCCccHHH
Confidence 367889999999887777766 34788999863 2333333433 33 458999999999988764 67789999
Q ss_pred HHHhhhhcccchhhhhchHHHHHHH
Q 038941 112 IRCVAHFLEMTEDFAEKNLEARAEA 136 (615)
Q Consensus 112 L~~AA~~Lqm~e~~~~~NL~~~ce~ 136 (615)
++.+|.|+|+-. |++--++
T Consensus 87 vLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHhhHHhhHh------HHhHHhh
Confidence 999999999986 7776666
No 34
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=60.22 E-value=1.5 Score=47.77 Aligned_cols=66 Identities=18% Similarity=0.079 Sum_probs=43.6
Q ss_pred ccccC--CceeEEEEE-cCEEEEecccccccccHHHHHhhcCCCCCCcceE-EecCCCCCHHHHHHHHHHHhcC
Q 038941 31 WPISD--VSSDLTIEV-GASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRV-NLSAVPGGAEAFELAAKFCYGI 100 (615)
Q Consensus 31 w~~~~--~~~DV~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v-~L~~~pGga~~felv~~FcY~~ 100 (615)
.+.++ ...|++..+ +|..|-+||+.|+++|.||..-+..---++ .+| .+.-+ +.+|+..++|.|-.
T Consensus 141 l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~-heI~~~~v~---~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 141 LRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG-HEIEAHRVI---LSAFSPFLKQLYLN 210 (516)
T ss_pred hhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc-Cchhhhhhh---HhhhhHHHHHHHHh
Confidence 34443 445888776 678999999999999888754332211011 223 33334 58999999999964
No 35
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=54.48 E-value=21 Score=29.05 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=28.6
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 038941 530 VRRENRELKLEVARMRMRLTDLEKDHVSMKQEL 562 (615)
Q Consensus 530 ~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~ 562 (615)
++.|.+.||..+..+..|+.+||.|+.-+|+-.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466889999999999999999999998888764
No 36
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=54.06 E-value=7.6 Score=34.45 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=33.0
Q ss_pred cCcccccccchhHHHHHHHHhhCCCCCHHHhhhhccccccccC
Q 038941 416 LPDHARIVSDGLYRAADIFLKVHPNIKDSERYRLCKTIDCQKL 458 (615)
Q Consensus 416 lP~~aR~~~DgLYrAIDiYLk~Hp~lse~Er~~lC~~mdc~KL 458 (615)
+|++-.-....+|+|+..||.+....+- .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 3444456678999999999999987775 88888888777663
No 37
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.18 E-value=23 Score=30.60 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhh
Q 038941 539 LEVARMRMRLTDLEKDHVSMKQELVR 564 (615)
Q Consensus 539 ~el~~m~~rv~eLEk~~~~mk~~~~k 564 (615)
.||+.+|..|.+||..+..||+..+.
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999998853
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.35 E-value=48 Score=27.37 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCcchhhHHhH-hhccc
Q 038941 533 ENRELKLEVARMRMRLTDLEKDHVSMKQELVRSHPANKLFKSLAK-KLSKL 582 (615)
Q Consensus 533 en~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k~~~~~~~~~s~~k-kl~rL 582 (615)
+...++.++..++.++.+++++-..++++++++.+...+...+.| +||=.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 445566777777777777777777777777777444445666666 77733
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.98 E-value=47 Score=38.71 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCchhHHHHHHHHHHHHHhhccCCCCChhHHHHHHHhcCccccccc--chhHHHHHHHHhhCCCCCHHHhhhhcccccc
Q 038941 378 SPKQSSILKVSKLLDNFLAEVALDSNLMPSKFIALAELLPDHARIVS--DGLYRAADIFLKVHPNIKDSERYRLCKTIDC 455 (615)
Q Consensus 378 ~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~--DgLYrAIDiYLk~Hp~lse~Er~~lC~~mdc 455 (615)
+|.+....|+|.-++.-| .-||..|+++.=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+-==-.|.-
T Consensus 298 tp~P~~V~KiAasf~A~l--y~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~ 375 (652)
T COG2433 298 TPAPETVKKIAASFNAVL--YTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWK 375 (652)
T ss_pred CCChHHHHHHHHHcCCcc--cCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 344567888888888777 478999999998887788888887777 8899999999988887777777421111111
Q ss_pred ccCCHHHhHHHHhCCCCchHHHHHHHHHHHHhhhhhhcCCCCccccccCCCCCCCCCCCCCCCCCcCC-CCcchhhhHhh
Q 038941 456 QKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGHNQFFFGAINGQFPQRSSSGAGSGAISP-RDNYASVRREN 534 (615)
Q Consensus 456 ~KLS~EAc~HAaQNeRlPlr~vVQvLf~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ren 534 (615)
+-.=.-||. - .=.||.-++-..- .......-.+. +...+....+--..+.. ...-..+..||
T Consensus 376 d~~rika~V--I--rG~~l~eal~~~~----------e~~~p~e~~~~---~~~e~~ei~~~~~~i~~~~~~ve~l~~e~ 438 (652)
T COG2433 376 DVERIKALV--I--RGYPLAEALSKVK----------EEERPREKEGT---EEEERREITVYEKRIKKLEETVERLEEEN 438 (652)
T ss_pred hHHHHHHHe--e--cCCcHHHHHHHHH----------hhhcccccccc---ccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 100000110 0 0112211111100 00000000000 00000000000000000 01123567799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 038941 535 RELKLEVARMRMRLTDLEKDHVSMKQELV 563 (615)
Q Consensus 535 ~~Lk~el~~m~~rv~eLEk~~~~mk~~~~ 563 (615)
+.|+.+++.|+..+.+||.+|..++.++.
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888775
No 40
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=35.54 E-value=71 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=28.3
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 038941 527 YASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELV 563 (615)
Q Consensus 527 ~~~~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~ 563 (615)
..+++.|++.|-.+++.|+.||.+||.-+++...-|+
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456778888888888888888888888777766664
No 41
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=34.11 E-value=22 Score=27.59 Aligned_cols=20 Identities=20% Similarity=0.597 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 038941 541 VARMRMRLTDLEKDHVSMKQ 560 (615)
Q Consensus 541 l~~m~~rv~eLEk~~~~mk~ 560 (615)
-+.+|.||+|||.|...+|+
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 36788999999999876554
No 42
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=33.90 E-value=49 Score=35.79 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhcCC
Q 038941 538 KLEVARMRMRLTDLEKDHVSMKQELVRSHP 567 (615)
Q Consensus 538 k~el~~m~~rv~eLEk~~~~mk~~~~k~~~ 567 (615)
|.||+.+..||.||||+...+++++..+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999876643
No 43
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.59 E-value=47 Score=35.91 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=26.0
Q ss_pred CcchhhhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 038941 525 DNYASVRRENRELKLEVARMRMRLTDLEKDHV 556 (615)
Q Consensus 525 ~~~~~~~ren~~Lk~el~~m~~rv~eLEk~~~ 556 (615)
|+...++.||..||.|.+.+|.+|..||.+..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557888999999999999999999987643
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.47 E-value=84 Score=30.76 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=23.7
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 038941 530 VRRENRELKLEVARMRMRLTDLEKDHVSMKQELV 563 (615)
Q Consensus 530 ~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~ 563 (615)
+..||+.|+.++..++.++.+||++...+++++.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777777777777777777777666655543
No 45
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.22 E-value=1e+02 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.7
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 038941 527 YASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELV 563 (615)
Q Consensus 527 ~~~~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~ 563 (615)
...+..+|-+||.+++.|+..+.++.+......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456788888999999999999888887766665543
No 46
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=32.01 E-value=97 Score=35.25 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCceeEEEEEcCEEEEecccccccc-cHHHHHhhcCC-----------CCCCcceEEecCCCCCHHHHHHHHHHHhcCcc
Q 038941 35 DVSSDLTIEVGASSFALHKFPLVSR-SGRIRKLLLEA-----------KDSKVSRVNLSAVPGGAEAFELAAKFCYGINV 102 (615)
Q Consensus 35 ~~~~DV~l~V~~~~F~~HK~vLas~-S~yfr~mf~~~-----------~e~~~~~v~L~~~pGga~~felv~~FcY~~~i 102 (615)
....-|+|.|||..+.+-+..|... =.++.++.... -+....+.-+.- .|.+|..|++|-+||++
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR---~P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDR---HPGAFAYVLNFYRTGKL 104 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeecc---ChHHHHHHHHHHhcCee
Confidence 4455689999999999888777652 12333333311 112234444443 45799999999999999
Q ss_pred ccchhhhhhHHHhh--hhcccchhhhhchHHHHHHH
Q 038941 103 ELTLSNVATIRCVA--HFLEMTEDFAEKNLEARAEA 136 (615)
Q Consensus 103 ~it~~NV~~L~~AA--~~Lqm~e~~~~~NL~~~ce~ 136 (615)
.. +.+|..+.-.. +|-++++ |-++.||.
T Consensus 105 H~-p~~vC~~~F~eEL~yWgI~~-----~~le~CC~ 134 (477)
T KOG3713|consen 105 HV-PADVCPLSFEEELDYWGIDE-----AHLESCCW 134 (477)
T ss_pred cc-ccccchHHHHHHHHHhCCCh-----hhhhHHhH
Confidence 98 56666654433 6777776 56666664
No 47
>PHA01750 hypothetical protein
Probab=29.22 E-value=1.1e+02 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=21.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 038941 531 RRENRELKLEVARMRMRLTDLEKDHVSMKQELV 563 (615)
Q Consensus 531 ~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~ 563 (615)
..|...|+.|++..+.|.-+||+.....|+.+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 345566777777777777777777666665443
No 48
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=29.19 E-value=38 Score=27.58 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.2
Q ss_pred chhHHHHHHHHhhCCCCCH
Q 038941 425 DGLYRAADIFLKVHPNIKD 443 (615)
Q Consensus 425 DgLYrAIDiYLk~Hp~lse 443 (615)
--||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3599999999999998654
No 49
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.50 E-value=67 Score=34.25 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=29.4
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q 038941 527 YASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRS 565 (615)
Q Consensus 527 ~~~~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k~ 565 (615)
|.++..|.+.|-..=+.+|.++.+||||..-||+-|...
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666667888999999999999999988544
No 50
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=25.48 E-value=48 Score=33.68 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHhcC--cccccccchhHHHHHHHHhhCCCCCHHHh
Q 038941 413 AELLP--DHARIVSDGLYRAADIFLKVHPNIKDSER 446 (615)
Q Consensus 413 ae~lP--~~aR~~~DgLYrAIDiYLk~Hp~lse~Er 446 (615)
.+-+| +..+..-+|=|+||.-|||.||+==|.++
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccch
Confidence 34455 66667799999999999999997555555
No 51
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=22.50 E-value=2e+02 Score=25.81 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=32.8
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q 038941 528 ASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRS 565 (615)
Q Consensus 528 ~~~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k~ 565 (615)
+.+++..+=.+.|-+-||-++++||++-..|..++.|.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777788899999999999999999999998765
No 52
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.31 E-value=2.2e+02 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 038941 541 VARMRMRLTDLEKDHVSMKQE 561 (615)
Q Consensus 541 l~~m~~rv~eLEk~~~~mk~~ 561 (615)
++.+..+|.+|+.+...++.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 53
>PRK14127 cell division protein GpsB; Provisional
Probab=20.44 E-value=1.2e+02 Score=27.85 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=21.9
Q ss_pred cchhhhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 038941 526 NYASVRRENRELKLEVARMRMRLTDLEKDHV 556 (615)
Q Consensus 526 ~~~~~~ren~~Lk~el~~m~~rv~eLEk~~~ 556 (615)
+|..+.+||..|+.++.+++.++.+++....
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555667777777777777777777776544
No 54
>PRK04330 hypothetical protein; Provisional
Probab=20.32 E-value=60 Score=28.70 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=13.2
Q ss_pred HHHHhhccCCCCChh
Q 038941 393 NFLAEVALDSNLMPS 407 (615)
Q Consensus 393 ~YLaEiA~D~~L~~~ 407 (615)
++|-||+.|||+|+.
T Consensus 58 s~LdeIs~DPNmP~h 72 (88)
T PRK04330 58 SILDEISNDPNMPLH 72 (88)
T ss_pred HHHHHhhcCCCCChH
Confidence 678999999999874
No 55
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.30 E-value=1.5e+02 Score=30.92 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=26.0
Q ss_pred chhhhHhhHHHHHHHHHHHHHHHHH---HHHhhhhHHHH
Q 038941 527 YASVRRENRELKLEVARMRMRLTDL---EKDHVSMKQEL 562 (615)
Q Consensus 527 ~~~~~ren~~Lk~el~~m~~rv~eL---Ek~~~~mk~~~ 562 (615)
+..+..||+.||.|++.++.++.++ ++|-..+|+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457789999999999999888855 45555555544
No 56
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=20.27 E-value=66 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHhhCCCCCHHHhh
Q 038941 424 SDGLYRAADIFLKVHPNIKDSERY 447 (615)
Q Consensus 424 ~DgLYrAIDiYLk~Hp~lse~Er~ 447 (615)
.|+.|.| -+.+|.+||++|-.
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~ 30 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSA 30 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHH
Confidence 3999998 58899999999854
Done!