Query 038941
Match_columns 615
No_of_seqs 320 out of 983
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 100.0 3.2E-30 1.1E-34 260.3 10.6 229 23-309 17-256 (256)
2 3i3n_A Kelch-like protein 11; 100.0 1.3E-29 4.5E-34 259.2 8.4 229 25-311 20-265 (279)
3 1buo_A POZ domain, protein (pr 99.8 1.9E-21 6.6E-26 175.0 8.1 106 24-141 15-120 (121)
4 2vkp_A BTB/POZ domain-containi 99.8 3.8E-21 1.3E-25 169.0 9.5 102 32-142 3-109 (109)
5 2if5_A Zinc finger and BTB dom 99.8 2.2E-21 7.4E-26 173.9 7.4 107 25-139 13-120 (120)
6 2vpk_A Myoneurin; transcriptio 99.8 3.8E-21 1.3E-25 171.5 6.9 102 28-140 13-116 (116)
7 3htm_A Speckle-type POZ protei 99.8 1E-20 3.5E-25 178.6 10.3 123 22-152 19-149 (172)
8 1r29_A B-cell lymphoma 6 prote 99.8 6.1E-21 2.1E-25 172.8 8.1 107 25-140 17-125 (127)
9 3b84_A Zinc finger and BTB dom 99.8 2.4E-21 8.3E-26 174.1 5.1 102 29-141 16-117 (119)
10 4eoz_A Speckle-type POZ protei 99.8 2.8E-21 9.6E-26 177.6 4.9 124 21-152 9-140 (145)
11 2ppi_A Gigaxonin; BTB domain, 99.8 6.3E-21 2.2E-25 177.5 7.0 107 25-139 35-144 (144)
12 2yy9_A Zinc finger and BTB dom 99.8 3.6E-21 1.2E-25 177.0 4.4 106 26-142 14-119 (135)
13 3ga1_A Nucleus accumbens-assoc 99.8 3.5E-21 1.2E-25 175.3 3.6 107 24-141 20-127 (129)
14 2q81_A MIZ-1 protein; BTB/POZ 99.8 6.3E-21 2.1E-25 171.4 4.2 100 28-139 18-117 (119)
15 3ohu_A Transcription regulator 99.8 3.2E-21 1.1E-25 174.2 2.3 106 24-138 19-125 (125)
16 2z8h_A Transcription regulator 99.8 2.1E-20 7.3E-25 172.1 7.3 110 24-142 23-133 (138)
17 3m5b_A Zinc finger and BTB dom 99.8 1.8E-20 6.1E-25 169.4 5.9 93 32-140 25-117 (119)
18 2ihc_A Transcription regulator 99.8 9.9E-21 3.4E-25 171.3 2.5 105 25-139 17-123 (124)
19 3hqi_A Speckle-type POZ protei 99.8 1.7E-18 5.7E-23 179.2 10.5 123 22-152 159-289 (312)
20 3fkc_A Transcriptional regulat 99.7 1.2E-18 4.1E-23 156.3 6.4 93 25-123 19-112 (116)
21 2ast_A S-phase kinase-associat 99.4 1.3E-13 4.5E-18 130.6 7.4 94 40-142 3-126 (159)
22 4ajy_C Transcription elongatio 99.2 9.2E-12 3.2E-16 108.5 6.6 79 40-121 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 5.6E-11 1.9E-15 110.5 7.7 91 40-142 4-121 (141)
24 2p1m_A SKP1-like protein 1A; F 98.9 7.7E-11 2.6E-15 111.8 0.0 92 40-142 6-125 (160)
25 1hv2_A Elongin C, ELC1; protei 98.4 2.7E-07 9.3E-12 80.7 6.7 79 40-121 6-99 (99)
26 3v7d_A Suppressor of kinetocho 98.4 4E-07 1.4E-11 87.1 7.8 95 39-142 8-133 (169)
27 2fnj_C Transcription elongatio 98.4 2.8E-07 9.4E-12 80.2 5.2 79 40-121 3-96 (96)
28 1vcb_B Protein (elongin C); tu 97.8 1.2E-05 4.1E-10 71.8 4.7 80 39-121 18-112 (112)
29 3drz_A BTB/POZ domain-containi 97.5 0.00022 7.4E-09 62.9 8.1 92 39-139 7-105 (107)
30 2eqx_A Kelch repeat and BTB do 97.5 4.6E-05 1.6E-09 66.8 3.5 94 101-270 5-98 (105)
31 3drx_A BTB/POZ domain-containi 95.9 0.014 4.8E-07 57.1 7.3 93 39-140 13-112 (202)
32 3kvt_A Potassium channel prote 94.6 0.011 3.9E-07 52.8 1.8 82 40-124 7-92 (115)
33 1s1g_A Potassium voltage-gated 93.5 0.061 2.1E-06 48.6 4.3 79 39-123 14-98 (124)
34 1t1d_A Protein (potassium chan 91.9 0.16 5.3E-06 44.2 4.6 82 40-124 3-89 (100)
35 2nz0_B Potassium voltage-gated 91.3 0.084 2.9E-06 48.7 2.4 81 38-124 35-121 (140)
36 1nn7_A Potassium channel KV4.2 90.6 0.086 2.9E-06 46.1 1.6 78 40-123 2-85 (105)
37 2yy0_A C-MYC-binding protein; 78.3 2.9 0.0001 32.2 4.7 32 533-564 20-51 (53)
38 1pd7_B MAD1; PAH2, SIN3, eukar 72.3 0.87 3E-05 29.9 0.3 17 107-123 3-19 (26)
39 1deb_A APC protein, adenomatou 71.5 7.8 0.00027 29.5 5.3 37 529-565 14-50 (54)
40 3vmx_A Voltage-gated hydrogen 69.9 8.4 0.00029 29.1 5.2 34 533-566 5-38 (48)
41 2r9r_B Paddle chimera voltage 54.6 13 0.00046 40.8 5.7 83 39-124 53-140 (514)
42 2yy0_A C-MYC-binding protein; 47.9 18 0.00061 27.7 3.8 30 526-555 20-49 (53)
43 1vjh_A BET V I allergen family 45.7 12 0.00041 33.0 2.9 31 399-440 92-122 (122)
44 3vp9_A General transcriptional 42.7 23 0.00079 30.3 4.0 26 539-564 50-75 (92)
45 3a2a_A Voltage-gated hydrogen 36.5 32 0.0011 26.6 3.5 33 534-566 13-45 (58)
46 1dip_A Delta-sleep-inducing pe 33.0 38 0.0013 27.7 3.6 33 530-562 13-45 (78)
47 3htm_A Speckle-type POZ protei 29.0 56 0.0019 29.3 4.7 45 89-142 120-164 (172)
48 3qh9_A Liprin-beta-2; coiled-c 25.0 1E+02 0.0036 25.6 5.0 24 531-554 18-41 (81)
49 1ci6_A Transcription factor AT 24.1 1.3E+02 0.0046 23.4 5.4 31 532-562 30-60 (63)
50 1a92_A Delta antigen; leucine 22.2 58 0.002 24.5 2.6 37 545-581 13-49 (50)
51 3he5_A Synzip1; heterodimeric 21.6 1.7E+02 0.006 21.1 5.0 36 528-563 13-48 (49)
52 4dzn_A Coiled-coil peptide CC- 21.2 1.3E+02 0.0045 20.2 3.9 24 529-552 6-29 (33)
53 3fs7_A Parvalbumin, thymic; ca 21.1 2.8E+02 0.0094 22.1 7.2 59 400-462 21-82 (109)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.96 E-value=3.2e-30 Score=260.33 Aligned_cols=229 Identities=13% Similarity=0.155 Sum_probs=168.0
Q ss_pred hhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-C--CCCcceEEecCCCCCHHHHHHHHHHHhc
Q 038941 23 SSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-K--DSKVSRVNLSAVPGGAEAFELAAKFCYG 99 (615)
Q Consensus 23 ~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~--e~~~~~v~L~~~pGga~~felv~~FcY~ 99 (615)
.+...-+..+.++.+|||+|.|||+.|++||.+|+++|+||++||++. . ++...+|.|++++ +++|+.+++|+||
T Consensus 17 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt 94 (256)
T 3hve_A 17 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFS 94 (256)
T ss_dssp HHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccC
Confidence 344555667888999999999999999999999999999999999874 3 5667789999994 7999999999999
Q ss_pred CccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhhhhccc
Q 038941 100 INVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKEQLTSG 172 (615)
Q Consensus 100 ~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~~~~~~ 172 (615)
|++.|+.+||..|+.||++|||++ |++.|++||.+.+ ++.+|+.+++ +.|..++..-..
T Consensus 95 ~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~-----~~L~~~~~~~i~--- 160 (256)
T 3hve_A 95 GQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAAENCIGIRDFALHYCL-----HHVHYLATEYLE--- 160 (256)
T ss_dssp SCCCCC-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCSSTTHHHHHHHHHTTC-----HHHHHHHHHHHH---
T ss_pred CCCcccHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCHhhHHHHHHHHHHcCc-----HHHHHHHHHHHH---
Confidence 999999999999999999999998 9999999999977 7889999987 333333321110
Q ss_pred ccccCCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccc
Q 038941 173 LLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGS 252 (615)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~ 252 (615)
.+|. . -+-.++|..|+.+.+..+|++......+|+.|++|++ +|+. +++..|.
T Consensus 161 -----~~f~---------~---v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~----~W~~----~~~~~R~-- 213 (256)
T 3hve_A 161 -----THFR---------D---VSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVI----RWIA----HDTEIRK-- 213 (256)
T ss_dssp -----HHHH---------H---HTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHT----TTCC----C--CCST--
T ss_pred -----HHHH---------H---HhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHH----HHHH----cCHHHHH--
Confidence 0000 0 1226899999999999999999998889999999999 8886 7776663
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 038941 253 LLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASAT-TSCRSDLER 309 (615)
Q Consensus 253 ~~~~~~~~~~r~LLEtIv~LLP~~~~~~~vs~~fL~~lLr~a~~l~as-~~Cr~~LEk 309 (615)
.+...|++.|+ +| .+|+.||...++...++..+ +.|+..|++
T Consensus 214 -------~~~~~ll~~VR--f~------~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 214 -------VHMKDVMSALW--VS------GLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp -------TTHHHHHHHHH--HH------TTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred -------HHHHHHHHhCC--CC------CCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 35678999998 65 56889999999999999998 789999875
No 2
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.96 E-value=1.3e-29 Score=259.19 Aligned_cols=229 Identities=14% Similarity=0.214 Sum_probs=181.7
Q ss_pred hhhcccccccCCceeEEEEEc---CEEEEecccccccccHHHHHhhcCC-CCCCcceEEec------CCCCCHHHHHHHH
Q 038941 25 IRHATEWPISDVSSDLTIEVG---ASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLS------AVPGGAEAFELAA 94 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~---~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~------~~pGga~~felv~ 94 (615)
..+-+..+.++.+|||+|.|| |+.|++||.+|+++|+||++||++. +|+...+|.|+ ++ ++++|+.++
T Consensus 20 l~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v--~~~~f~~ll 97 (279)
T 3i3n_A 20 SWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGP--EPDTVEAVI 97 (279)
T ss_dssp HHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCS--CHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCC--CHHHHHHHH
Confidence 344455678899999999998 9999999999999999999999975 77777899998 66 579999999
Q ss_pred HHHhcCccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCcHHHHHHHHHHHhhhh
Q 038941 95 KFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISLVNRLINAIANNACKE 167 (615)
Q Consensus 95 ~FcY~~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~iv~rCidsLa~ka~~~ 167 (615)
+|+|||++.|+.+||..|+.||++|||++ |++.|++||.+.+ ++.+|+.+++ +.|..++..-
T Consensus 98 ~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~-----~~L~~~~~~~ 166 (279)
T 3i3n_A 98 EYMYTGRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHLSNCVAIHSLAHMYTL-----SQLALKAADM 166 (279)
T ss_dssp HHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCTTTHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCcchHHHHHHHHHHcCc-----HHHHHHHHHH
Confidence 99999999999999999999999999997 9999999999977 7889999987 3333333211
Q ss_pred hhcccccccCCCCCcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCcc
Q 038941 168 QLTSGLLKLDHTFPAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQ 247 (615)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~ 247 (615)
.. .+|. .-+..++|..|+.+.+..+|++......+|+.|++|++ +|+. +++.
T Consensus 167 i~--------~~f~------------~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~----~W~~----~~~~ 218 (279)
T 3i3n_A 167 IR--------RNFH------------KVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVL----KWVQ----RNAE 218 (279)
T ss_dssp HH--------HTHH------------HHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHH----HHHH----TTHH
T ss_pred HH--------HHHH------------HHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHH----HHHH----cCHH
Confidence 10 0000 01236899999999999999999888889999999999 5543 5554
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 038941 248 LVKGSLLDLELQKKQRVIVEAIVGLLPTQSRKSPVPMAFLSSLLKTAIAASATTSCRSDLERRI 311 (615)
Q Consensus 248 ~r~~~~~~~~~~~~~r~LLEtIv~LLP~~~~~~~vs~~fL~~lLr~a~~l~as~~Cr~~LEkrI 311 (615)
.|. .+...|++.|+ +| .+|+.||..+++...++..++.|+..|.+..
T Consensus 219 ~r~---------~~~~~ll~~VR--f~------l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~ 265 (279)
T 3i3n_A 219 ERE---------RYFEELFKLLR--LS------QMKPTYLTRHVKPERLVANNEVCVKLVADAV 265 (279)
T ss_dssp HHT---------TTHHHHHTTSC--GG------GSCHHHHHHTTTTSHHHHTCHHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHhcC--CC------CCCHHHHHHHhhccchhcCCHHHHHHHHHHH
Confidence 442 25577888887 65 6799999999999999999999999986644
No 3
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.84 E-value=1.9e-21 Score=175.04 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=96.4
Q ss_pred hhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCccc
Q 038941 24 SIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVE 103 (615)
Q Consensus 24 ~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~ 103 (615)
....-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ..+|.|++++ +++|+.+++|+|||++.
T Consensus 15 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~ 88 (121)
T 1buo_A 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTATLQ 88 (121)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC----CcEEEeCCCC--HHHHHHHHHhhcCCCcC
Confidence 34445566788999999999999999999999999999999999863 4579999995 79999999999999999
Q ss_pred cchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHh
Q 038941 104 LTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEM 141 (615)
Q Consensus 104 it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 141 (615)
++.+|+..|+.||++|+|++ |.+.|++||.+.
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~------L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEY------LEEQCLKMLETI 120 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHh
Confidence 99999999999999999997 999999999875
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=169.05 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=91.4
Q ss_pred cccCCceeEEEEEcC----EEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccch
Q 038941 32 PISDVSSDLTIEVGA----SSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTL 106 (615)
Q Consensus 32 ~~~~~~~DV~l~V~~----~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~ 106 (615)
+.++.+|||+|.|+| +.|++||.+|+++|+||++||.+. .|+. ..|.|+++ .+++|+.+++|+||+++.++.
T Consensus 3 ~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~--~~~~f~~~l~~iYt~~~~~~~ 79 (109)
T 2vkp_A 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDV--EPAAFLILLKYMYSDEIDLEA 79 (109)
T ss_dssp TTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTS--CHHHHHHHHHHHHHCCCCCCT
T ss_pred ccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCC--CHHHHHHHHHHHcCCCccCCH
Confidence 457899999999998 999999999999999999999975 5665 78999999 479999999999999999999
Q ss_pred hhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 107 SNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 107 ~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
+||..|+.+|++++|++ |.+.|++||.+.+
T Consensus 80 ~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVPA------LAKACVNFLETSL 109 (109)
T ss_dssp TTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence 99999999999999998 9999999998753
No 5
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.84 E-value=2.2e-21 Score=173.90 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=94.8
Q ss_pred hhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcCccc
Q 038941 25 IRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVE 103 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~ 103 (615)
...-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .++....|.|+++ .+++|+.+++|+||+++.
T Consensus 13 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~ll~~~Yt~~~~ 90 (120)
T 2if5_A 13 LSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFV--SAEALTALMDFAYTATLT 90 (120)
T ss_dssp HHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSS--CHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCC--CHHHHHHHHHHHcCCCCc
Confidence 3444455678999999999999999999999999999999999975 6677788999999 479999999999999999
Q ss_pred cchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHH
Q 038941 104 LTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLK 139 (615)
Q Consensus 104 it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~ 139 (615)
++.+|+..|+.||++|+|++ |++.|++||+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 99999999999999999998 9999999984
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.8e-21 Score=171.52 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=91.8
Q ss_pred cccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEec--CCCCCHHHHHHHHHHHhcCccccc
Q 038941 28 ATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLS--AVPGGAEAFELAAKFCYGINVELT 105 (615)
Q Consensus 28 ~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~--~~pGga~~felv~~FcY~~~i~it 105 (615)
-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ....|.|+ ++ .+++|+.+++|+|||++.++
T Consensus 13 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~--~~~~f~~ll~~~Yt~~~~~~ 87 (116)
T 2vpk_A 13 LNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQV--KADGFQKLLEFIYTGTLNLD 87 (116)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTC--CHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCC--CHHHHHHHHHHHcCCCcccC
Confidence 3445677999999999999999999999999999999999875 24567777 88 47999999999999999999
Q ss_pred hhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHH
Q 038941 106 LSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKE 140 (615)
Q Consensus 106 ~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~ 140 (615)
.+||..|+.||++|||++ |++.|++||.+
T Consensus 88 ~~~v~~ll~~A~~~~i~~------L~~~C~~~l~~ 116 (116)
T 2vpk_A 88 SWNVKEIHQAADYLKVEE------VVTKCKIKMED 116 (116)
T ss_dssp TTTHHHHHHHHHHTTCHH------HHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCHH------HHHHHHHHHhC
Confidence 999999999999999997 99999999963
No 7
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=178.64 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=111.9
Q ss_pred chhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcC
Q 038941 22 SSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGI 100 (615)
Q Consensus 22 ~~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~ 100 (615)
+.+...-+.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .++...+|.|+++ .+++|+.+++|+||+
T Consensus 19 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~~l~~~Yt~ 96 (172)
T 3htm_A 19 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYTG 96 (172)
T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSS--CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCC--CHHHHHHHHHHHhCC
Confidence 3455556667788999999999999999999999999999999999975 6777789999999 479999999999999
Q ss_pred ccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCc
Q 038941 101 NVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISL 152 (615)
Q Consensus 101 ~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~i 152 (615)
++.++.+|+..|+.+|++|+|++ |.+.|+.||.+.+ ++.+|+.+++
T Consensus 97 ~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~ 149 (172)
T 3htm_A 97 KAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNLSVENAAEILILADLHSA 149 (172)
T ss_dssp CCTTGGGTHHHHHHHHHHTTCHH------HHHHHHHHHHHTCCTTTHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999997 9999999999876 7889999987
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.83 E-value=6.1e-21 Score=172.83 Aligned_cols=107 Identities=22% Similarity=0.404 Sum_probs=97.2
Q ss_pred hhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEe-cCCCCCHHHHHHHHHHHhcCcc
Q 038941 25 IRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNL-SAVPGGAEAFELAAKFCYGINV 102 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L-~~~pGga~~felv~~FcY~~~i 102 (615)
...-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .| ....|.| +++ .+++|+.+++|+||+++
T Consensus 17 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~--~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 17 LLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEI--NPEGFNILLDFMYTSRL 93 (127)
T ss_dssp HHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTS--CHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCC--CHHHHHHHHHHHcCCCc
Confidence 3444456778999999999999999999999999999999999975 55 6678999 899 47999999999999999
Q ss_pred ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHH
Q 038941 103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKE 140 (615)
Q Consensus 103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~ 140 (615)
.++.+||..|+.||++|+|++ |++.|+.||.+
T Consensus 94 ~~~~~~~~~ll~~A~~~~i~~------L~~~c~~~l~~ 125 (127)
T 1r29_A 94 NLREGNIMAVMATAMYLQMEH------VVDTCRKFIKA 125 (127)
T ss_dssp CCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence 999999999999999999998 99999999975
No 9
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.83 E-value=2.4e-21 Score=174.10 Aligned_cols=102 Identities=24% Similarity=0.191 Sum_probs=91.7
Q ss_pred ccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhh
Q 038941 29 TEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSN 108 (615)
Q Consensus 29 ~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~N 108 (615)
+..+.++.+|||+|.|||+.|++||.+|+++|+||++||.+.. ..+|.|++++ +++|+.+++|+|||++.++.+|
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~ 90 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGN 90 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHH
Confidence 3456779999999999999999999999999999999998743 4579999995 7999999999999999999999
Q ss_pred hhhHHHhhhhcccchhhhhchHHHHHHHHHHHh
Q 038941 109 VATIRCVAHFLEMTEDFAEKNLEARAEAYLKEM 141 (615)
Q Consensus 109 V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 141 (615)
|..|+.||++|+|++ |++.|++||.+.
T Consensus 91 v~~ll~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 91 RDQVLLAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHCC---
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHHc
Confidence 999999999999998 999999999763
No 10
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.82 E-value=2.8e-21 Score=177.56 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=98.4
Q ss_pred CchhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhc
Q 038941 21 PSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYG 99 (615)
Q Consensus 21 ~~~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~ 99 (615)
++.+...-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .++....|.|+++ .+++|+.+++|+||
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~~~~~l~~~Y~ 86 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYT 86 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSS--CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCC--CHHHHHHHHHhhcc
Confidence 34455555666778999999999999999999999999999999999875 5556678999999 47999999999999
Q ss_pred CccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCc
Q 038941 100 INVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISL 152 (615)
Q Consensus 100 ~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~i 152 (615)
+++.++.+|+..|+.+|++|+|++ |.+.|+.||.+.+ ++.+|+.+++
T Consensus 87 ~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 87 GKAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNLSVENAAEILILADLHSA 140 (145)
T ss_dssp SCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHCC----------------------
T ss_pred CccCCcHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999998 9999999999876 6677777765
No 11
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.82 E-value=6.3e-21 Score=177.51 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=92.9
Q ss_pred hhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-C--CCCcceEEecCCCCCHHHHHHHHHHHhcCc
Q 038941 25 IRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-K--DSKVSRVNLSAVPGGAEAFELAAKFCYGIN 101 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~--e~~~~~v~L~~~pGga~~felv~~FcY~~~ 101 (615)
...-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. . ++....|.|++++ +++|+.+++|+|||+
T Consensus 35 ~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~ 112 (144)
T 2ppi_A 35 LRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQ 112 (144)
T ss_dssp HHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCC
Confidence 3444556788999999999999999999999999999999999864 3 3566789999995 799999999999999
Q ss_pred cccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHH
Q 038941 102 VELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLK 139 (615)
Q Consensus 102 i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~ 139 (615)
+.|+.+||..|+.||++|+|++ |++.|++||.
T Consensus 113 ~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~~L~ 144 (144)
T 2ppi_A 113 IRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLE 144 (144)
T ss_dssp CCCCTTTHHHHHHHHHHTTCHH------HHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhCcHH------HHHHHHHHhC
Confidence 9999999999999999999998 9999999984
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=3.6e-21 Score=177.01 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=92.1
Q ss_pred hhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCccccc
Q 038941 26 RHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELT 105 (615)
Q Consensus 26 ~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it 105 (615)
..-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+.. ..+|.|++++ +++|+.+++|+||+++.|+
T Consensus 14 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~ 88 (135)
T 2yy9_A 14 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGF--AEIFGLLLDFFYTGHLALT 88 (135)
T ss_dssp HHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGG--HHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCC--HHHHHHHHHHHhCCCCCCC
Confidence 3344567789999999999999999999999999999999998643 4579999995 7999999999999999999
Q ss_pred hhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 106 LSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 106 ~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
.+||..|+.||++|||++ |++.|++||.+.+
T Consensus 89 ~~~v~~ll~~A~~l~i~~------L~~~C~~~l~~~l 119 (135)
T 2yy9_A 89 SGNRDQVLLAAKELRVPE------AVELCQSFQPQTS 119 (135)
T ss_dssp TTTHHHHHHHHHHTTCHH------HHHHHHHCCC---
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhc
Confidence 999999999999999997 9999999998765
No 13
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.5e-21 Score=175.26 Aligned_cols=107 Identities=20% Similarity=0.392 Sum_probs=89.7
Q ss_pred hhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEec-CCCCCHHHHHHHHHHHhcCcc
Q 038941 24 SIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLS-AVPGGAEAFELAAKFCYGINV 102 (615)
Q Consensus 24 ~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~-~~pGga~~felv~~FcY~~~i 102 (615)
....-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ...+|.|+ +++ +++|+.+++|+|||++
T Consensus 20 l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~--~~~f~~ll~~iYtg~~ 94 (129)
T 3ga1_A 20 ILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQ--PQSFQQILSFCYTGRL 94 (129)
T ss_dssp HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCC--HHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCC--HHHHHHHHHHHhCCcc
Confidence 34444556778999999999999999999999999999999999875 45689996 894 7999999999999999
Q ss_pred ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHh
Q 038941 103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEM 141 (615)
Q Consensus 103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 141 (615)
.|+.+||..|+.||++|||++ |++.|++||.+.
T Consensus 95 ~i~~~~~~~ll~~A~~~~i~~------l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMNVGDQDLLMYTAGFLQIQE------IMEKGTEFFLKV 127 (129)
T ss_dssp ECCTTTHHHHHHHHHHTTBTT------SSCC--------
T ss_pred ccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHh
Confidence 999999999999999999998 999999999864
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.81 E-value=6.3e-21 Score=171.40 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=90.8
Q ss_pred cccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchh
Q 038941 28 ATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS 107 (615)
Q Consensus 28 ~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~ 107 (615)
-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ...|.|+++ .+++|+.+++|+|||++.++.+
T Consensus 18 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~--~~~~f~~ll~~~Ytg~~~i~~~ 91 (119)
T 2q81_A 18 LNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ----KDVVHLDIS--NAAGLGQVLEFMYTAKLSLSPE 91 (119)
T ss_dssp HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC----CSGGGGGGC--CHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCC--CHHHHHHHHHHHcCCCCccCHH
Confidence 3445677999999999999999999999999999999999863 345778888 4799999999999999999999
Q ss_pred hhhhHHHhhhhcccchhhhhchHHHHHHHHHH
Q 038941 108 NVATIRCVAHFLEMTEDFAEKNLEARAEAYLK 139 (615)
Q Consensus 108 NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~ 139 (615)
||..|+.||++|||++ |++.|++||.
T Consensus 92 ~~~~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 92 NVDDVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHh
Confidence 9999999999999998 9999999985
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.81 E-value=3.2e-21 Score=174.17 Aligned_cols=106 Identities=24% Similarity=0.297 Sum_probs=93.6
Q ss_pred hhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecC-CCCCHHHHHHHHHHHhcCcc
Q 038941 24 SIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSA-VPGGAEAFELAAKFCYGINV 102 (615)
Q Consensus 24 ~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~-~pGga~~felv~~FcY~~~i 102 (615)
....-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+.... ...|.|++ + .+++|+.+++|+|||++
T Consensus 19 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~~--~~~~f~~~l~~iYtg~~ 95 (125)
T 3ohu_A 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEV--TARGFGPLLQFAYTAKL 95 (125)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-SCEEECCTTC--CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-CcEEEeCCCC--CHHHHHHHHHhHcCCce
Confidence 33444556778999999999999999999999999999999999875222 56799988 8 47999999999999999
Q ss_pred ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHH
Q 038941 103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYL 138 (615)
Q Consensus 103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL 138 (615)
.++.+||..|+.||++|+|++ |++.|++||
T Consensus 96 ~~~~~~v~~ll~~A~~l~i~~------L~~~C~~~L 125 (125)
T 3ohu_A 96 LLSRENIREVIRCAEFLRMHN------LEDSCFSFL 125 (125)
T ss_dssp EECTTTHHHHHHHHHHHTBSS------CTTSSCCCC
T ss_pred EECHHHHHHHHHHHHHhCCHH------HHHHHHHhC
Confidence 999999999999999999998 888888875
No 16
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.81 E-value=2.1e-20 Score=172.12 Aligned_cols=110 Identities=23% Similarity=0.296 Sum_probs=96.5
Q ss_pred hhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEec-CCCCCHHHHHHHHHHHhcCcc
Q 038941 24 SIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLS-AVPGGAEAFELAAKFCYGINV 102 (615)
Q Consensus 24 ~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~-~~pGga~~felv~~FcY~~~i 102 (615)
....-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+... +...|.|+ ++ .+++|+.+++|+|||++
T Consensus 23 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~-e~~~i~l~~~v--~~~~~~~lL~~~Ytg~~ 99 (138)
T 2z8h_A 23 VLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD-AELTVTLPEEV--TVKGFEPLIQFAYTAKL 99 (138)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCC-TTEEEECCTTS--CHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCC-CCceEEeCCCC--CHHHHHHHHHHhcCCCc
Confidence 3444455677899999999999999999999999999999999987522 13578885 88 47999999999999999
Q ss_pred ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
.|+.+||..|+.||++|||++ |++.|++||.+.+
T Consensus 100 ~i~~~~v~~ll~~A~~~~i~~------L~~~C~~~l~~~l 133 (138)
T 2z8h_A 100 ILSKDNVDEVCRCVEFLSVHN------IEESCFQFLKFKF 133 (138)
T ss_dssp CCCTTTHHHHHHHHHHHTCGG------GHHHHHHHTTCCC
T ss_pred ccCHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHhc
Confidence 999999999999999999998 9999999998654
No 17
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.80 E-value=1.8e-20 Score=169.41 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=85.0
Q ss_pred cccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchhhhhh
Q 038941 32 PISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLSNVAT 111 (615)
Q Consensus 32 ~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~NV~~ 111 (615)
+.++.+|||+|.|+|+.|++||.+|+++|+||++ ....|+|+++ .+++|+.+++|+|||++.|+.+||..
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v--~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGI--SPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSC--CHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCC--CHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 4569999999999999999999999999999985 2457899999 47999999999999999999999999
Q ss_pred HHHhhhhcccchhhhhchHHHHHHHHHHH
Q 038941 112 IRCVAHFLEMTEDFAEKNLEARAEAYLKE 140 (615)
Q Consensus 112 L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~ 140 (615)
|+.||++|||+. |++.|++++.+
T Consensus 95 ll~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHC--
T ss_pred HHHHHHHhCCHH------HHHHHHHHHhh
Confidence 999999999997 99999999875
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.79 E-value=9.9e-21 Score=171.30 Aligned_cols=105 Identities=23% Similarity=0.315 Sum_probs=92.2
Q ss_pred hhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEec-CCCCCHHHHHHHHHHHhcCcc
Q 038941 25 IRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLS-AVPGGAEAFELAAKFCYGINV 102 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~-~~pGga~~felv~~FcY~~~i 102 (615)
...-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .+ ...|.|+ ++ .+++|+.+++|+|||++
T Consensus 17 ~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e--~~~i~l~~~v--~~~~f~~lL~~iYtg~~ 92 (124)
T 2ihc_A 17 LLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG--ELNITLPEEV--TVKGFEPLIQFAYTAKL 92 (124)
T ss_dssp HHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-----CEEEECCTTS--CHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC--CceEeecCCc--CHHHHHHHHHHhcCCCc
Confidence 3444556678999999999999999999999999999999999975 33 2578884 88 57999999999999999
Q ss_pred ccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHH
Q 038941 103 ELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLK 139 (615)
Q Consensus 103 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~ 139 (615)
.|+.+||..|+.||++|||++ |++.|++||.
T Consensus 93 ~i~~~~v~~ll~~A~~~~~~~------L~~~C~~~l~ 123 (124)
T 2ihc_A 93 ILSKENVDEVCKCVEFLSVHN------IEESCFQFLK 123 (124)
T ss_dssp EEETTTHHHHHHHHHHHTBSS------CCGGGGGTC-
T ss_pred ccCHHHHHHHHHHHHHHCCHH------HHHHHHHHHh
Confidence 999999999999999999998 9999999985
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.75 E-value=1.7e-18 Score=179.25 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=107.4
Q ss_pred chhhhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCC-CCCCcceEEecCCCCCHHHHHHHHHHHhcC
Q 038941 22 SSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-KDSKVSRVNLSAVPGGAEAFELAAKFCYGI 100 (615)
Q Consensus 22 ~~~~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~e~~~~~v~L~~~pGga~~felv~~FcY~~ 100 (615)
.....+-...+.++.+|||+|.|+|++|++||.+||++|+||++||.+. .|+...+|.|+++ .+++|+.+++|+||+
T Consensus 159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYTG 236 (312)
T ss_dssp CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSS--CHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCC--CHHHHHHHHHhhcCC
Confidence 3344444555677999999999999999999999999999999999875 6777789999999 579999999999999
Q ss_pred ccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh-------hhhhhhhhCc
Q 038941 101 NVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV-------LLPLSEEISL 152 (615)
Q Consensus 101 ~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l-------llp~AE~l~i 152 (615)
++.++.+||..|+.||++++|+. |+..|+.||.+.+ ++.+|+.+++
T Consensus 237 ~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~ 289 (312)
T 3hqi_A 237 KAPNLDKMADDLLAAADKYALER------LKVMCEDALCSNLSVENAAEILILADLHSA 289 (312)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTCCTTTHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHHhCHHH------HHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999997 9999999999876 7889999876
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.74 E-value=1.2e-18 Score=156.26 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=84.1
Q ss_pred hhhcccccccCCceeEEEEEcCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCcc-c
Q 038941 25 IRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGINV-E 103 (615)
Q Consensus 25 ~~~~~~w~~~~~~~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~i-~ 103 (615)
...-+..+.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ...|.|++++ +++|+.+++|+|||++ .
T Consensus 19 ~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~ 92 (116)
T 3fkc_A 19 LNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIR--AEIFAEILNYIYSSKIVR 92 (116)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHTTSCCCS
T ss_pred HHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHhhcCCCcCC
Confidence 3444455678999999999999999999999999999999999864 4589999994 7999999999999999 7
Q ss_pred cchhhhhhHHHhhhhcccch
Q 038941 104 LTLSNVATIRCVAHFLEMTE 123 (615)
Q Consensus 104 it~~NV~~L~~AA~~Lqm~e 123 (615)
++.+||..|+.||++|||+.
T Consensus 93 ~~~~~~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 93 VRSDLLDELIKSGQLLGVKF 112 (116)
T ss_dssp CCHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999986
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.43 E-value=1.3e-13 Score=130.60 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=81.7
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcC-C-C-CCCcceEEecCCCCCHHHHHHHHHHHhcCc--------------
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLE-A-K-DSKVSRVNLSAVPGGAEAFELAAKFCYGIN-------------- 101 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~-~-~-e~~~~~v~L~~~pGga~~felv~~FcY~~~-------------- 101 (615)
|+|.. +|+.|.+||.+ |++|+||+.||.. + . |+....|.|++|+ +.+++.|++|||+.+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 67765 79999999999 9999999999987 3 4 5556789999996 599999999999987
Q ss_pred ------------cccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 102 ------------VELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 102 ------------i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
+.|+.+|+..|+.||+||+|.. |++.||.|+...+
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~------Lld~~c~~va~~i 126 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMI 126 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 8999999999999999999997 9999999998876
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.23 E-value=9.2e-12 Score=108.54 Aligned_cols=79 Identities=14% Similarity=0.292 Sum_probs=65.7
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCC---CCCCcceEEecCCCCCHHHHHHHHHHHh-----c---Cccc---c
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEA---KDSKVSRVNLSAVPGGAEAFELAAKFCY-----G---INVE---L 104 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~---~e~~~~~v~L~~~pGga~~felv~~FcY-----~---~~i~---i 104 (615)
|+|.- +|+.|.+||.+ |++|+||++||.+. .|+....|.|++|+ +.+++.|++||| + +.|. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 45554 78999999999 99999999999862 45566789999995 599999999999 5 6777 9
Q ss_pred chhhhhhHHHhhhhccc
Q 038941 105 TLSNVATIRCVAHFLEM 121 (615)
Q Consensus 105 t~~NV~~L~~AA~~Lqm 121 (615)
+++|+..|+.||+||+.
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999983
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.14 E-value=5.6e-11 Score=110.51 Aligned_cols=91 Identities=14% Similarity=0.243 Sum_probs=81.1
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCc-----------------
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGIN----------------- 101 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~----------------- 101 (615)
|+|.. +|+.|.+|+.+ |..|+||+.||.... ...|.|++|+ +.+++.|++|||..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 77 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTD 77 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCC--HHHHHHHHHHHHHHTTCC--------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchh
Confidence 67776 78999999998 899999999998642 3479999996 599999999999765
Q ss_pred ---------cccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 102 ---------VELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 102 ---------i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
+.++.+++..|+.||+||++.. |++.||.|+...+
T Consensus 78 ~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~i 121 (141)
T 1fs1_B 78 DIPVWDQEFLKVDQGTLFELILAANYLDIKG------LLDVTCKTVANMI 121 (141)
T ss_dssp ---HHHHHHTCSCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHH
Confidence 7899999999999999999997 9999999998876
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.95 E-value=7.7e-11 Score=111.79 Aligned_cols=92 Identities=13% Similarity=0.230 Sum_probs=50.6
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCc-----------------
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGIN----------------- 101 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~----------------- 101 (615)
|+|.. +|+.|.+|+.+ |..|+||+.||.... ....|.|++|+ +.+++.|++|||..+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 80 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC--VDNGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSC--HHHHHHHHHC----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC--CCCceeCCcCc--HHHHHHHHHHHHHcccCCCccccccccccccc
Confidence 66664 79999999998 899999999998642 23479999996 599999999999865
Q ss_pred ----------cccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 102 ----------VELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 102 ----------i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
+.|+..++..|+.||+||+|.. |++.||.|+...+
T Consensus 81 ~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~------Lldl~c~~vA~~i 125 (160)
T 2p1m_A 81 DDLKAWDADFMKIDQATLFELILAANYLNIKN------LLDLTCQTVADMI 125 (160)
T ss_dssp --------------------CHHHHHHTTCHH------HHHHHHHHHHHTT
T ss_pred chhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 5799999999999999999997 9999999998776
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.44 E-value=2.7e-07 Score=80.72 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=66.7
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCCCCCCcceEEecCCCCCHHHHHHHHHHHhcCc--------------ccc
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEAKDSKVSRVNLSAVPGGAEAFELAAKFCYGIN--------------VEL 104 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~e~~~~~v~L~~~pGga~~felv~~FcY~~~--------------i~i 104 (615)
|+|.- +|+.|.+|+.+ |..|++|+.|+..+-+.....|.|++|+ +.+++.|++|||.-+ ..+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 67766 88999999997 8999999999986433444689999996 599999999999633 368
Q ss_pred chhhhhhHHHhhhhccc
Q 038941 105 TLSNVATIRCVAHFLEM 121 (615)
Q Consensus 105 t~~NV~~L~~AA~~Lqm 121 (615)
...++..|+.||+||++
T Consensus 83 d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 83 PTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999985
No 26
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.41 E-value=4e-07 Score=87.05 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=76.8
Q ss_pred eEEEEE-cCEEEEecccccccccHHHHHhhcCCCC-----CCcceEEecCCCCCHHHHHHHHHHHhcCc-----------
Q 038941 39 DLTIEV-GASSFALHKFPLVSRSGRIRKLLLEAKD-----SKVSRVNLSAVPGGAEAFELAAKFCYGIN----------- 101 (615)
Q Consensus 39 DV~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~~e-----~~~~~v~L~~~pGga~~felv~~FcY~~~----------- 101 (615)
-|+|.- +|+.|.+++.+ |..|++++.|+..... .....|.|++|+ +.+++.|++|||--+
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCccccccc
Confidence 466665 68999999997 7889999999986421 223679999996 499999999999532
Q ss_pred --------------cccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 102 --------------VELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 102 --------------i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
+.|....+..|+.||+||+|.. |++.||.++...+
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~------Lldl~c~~vA~~i 133 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKP------LLDAGCKVVAEMI 133 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 4678899999999999999997 9999999987765
No 27
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.38 E-value=2.8e-07 Score=80.19 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=64.2
Q ss_pred EEEEE-cCEEEEecccccccccHHHHHhhcCC---CCCCcceEEecCCCCCHHHHHHHHHHHhcCc-----------ccc
Q 038941 40 LTIEV-GASSFALHKFPLVSRSGRIRKLLLEA---KDSKVSRVNLSAVPGGAEAFELAAKFCYGIN-----------VEL 104 (615)
Q Consensus 40 V~l~V-~~~~F~~HK~vLas~S~yfr~mf~~~---~e~~~~~v~L~~~pGga~~felv~~FcY~~~-----------i~i 104 (615)
|+|.- +|+.|.+|+.+ |..|++|+.|+... .|.....|.|++|+ +.+++.|++|||.-. ..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56665 78999999997 89999999999863 34445689999996 599999999999633 478
Q ss_pred chhhhhhHHHhhhhccc
Q 038941 105 TLSNVATIRCVAHFLEM 121 (615)
Q Consensus 105 t~~NV~~L~~AA~~Lqm 121 (615)
....+..|+.||+||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 89999999999999985
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.83 E-value=1.2e-05 Score=71.84 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=63.5
Q ss_pred eEEEE-EcCEEEEecccccccccHHHHHhhcCC---CCCCcceEEecCCCCCHHHHHHHHHHHhcCc-----------cc
Q 038941 39 DLTIE-VGASSFALHKFPLVSRSGRIRKLLLEA---KDSKVSRVNLSAVPGGAEAFELAAKFCYGIN-----------VE 103 (615)
Q Consensus 39 DV~l~-V~~~~F~~HK~vLas~S~yfr~mf~~~---~e~~~~~v~L~~~pGga~~felv~~FcY~~~-----------i~ 103 (615)
-|+|. .+|+.|.+++. .|..|+.++.|+... .+.....|.|++|+ +.+++.|++|||--. ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 35666 47899999999 578999999999863 23334589999996 599999999998532 47
Q ss_pred cchhhhhhHHHhhhhccc
Q 038941 104 LTLSNVATIRCVAHFLEM 121 (615)
Q Consensus 104 it~~NV~~L~~AA~~Lqm 121 (615)
|...++..|+.||+||++
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999985
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.53 E-value=0.00022 Score=62.92 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=71.5
Q ss_pred eEEEEEcCEEEEeccccccccc-HHHHHhhcCCCC----C-CcceEEecCCCCCHHHHHHHHHHHhcCccccchh-hhhh
Q 038941 39 DLTIEVGASSFALHKFPLVSRS-GRIRKLLLEAKD----S-KVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS-NVAT 111 (615)
Q Consensus 39 DV~l~V~~~~F~~HK~vLas~S-~yfr~mf~~~~e----~-~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~-NV~~ 111 (615)
=|+|.|||+.|...+..|.... .+|.+||....+ . ...++-| |- .|+.|+.|++|..+|++.+..+ .+..
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DR--dp~~F~~IL~~lr~g~l~~p~~~~~~~ 83 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 83 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CS--CHHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cC--ChHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence 4788999999999999999875 578999875311 1 2234544 44 5799999999999999887442 3467
Q ss_pred HHHhhhhcccchhhhhchHHHHHHHHHH
Q 038941 112 IRCVAHFLEMTEDFAEKNLEARAEAYLK 139 (615)
Q Consensus 112 L~~AA~~Lqm~e~~~~~NL~~~ce~FL~ 139 (615)
++..|+|.++++ |++.|++-+.
T Consensus 84 l~~Ea~fy~l~~------L~~~l~~~i~ 105 (107)
T 3drz_A 84 VLEEAEFYNITS------LIKLVKDKIR 105 (107)
T ss_dssp HHHHHHHHTCHH------HHHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHh
Confidence 999999999998 8888887654
No 30
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=4.6e-05 Score=66.78 Aligned_cols=94 Identities=9% Similarity=-0.005 Sum_probs=72.3
Q ss_pred ccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhhhhhhhhhhCcHHHHHHHHHHHhhhhhhcccccccCCCC
Q 038941 101 NVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMVLLPLSEEISLVNRLINAIANNACKEQLTSGLLKLDHTF 180 (615)
Q Consensus 101 ~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~lllp~AE~l~iv~rCidsLa~ka~~~~~~~~~~~~~~~~ 180 (615)
.=.|+++|...++..|+.++.++ |.++|..|+.+.+ .. +
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~------L~~~a~~fi~~nF---------------~~----v---------------- 43 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPE------LYTAAKHCAKTHL---------------AQ----L---------------- 43 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC---------------HH----H----------------
T ss_pred hccCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHH---------------HH----H----------------
Confidence 34689999999999999999887 8888888876543 00 0
Q ss_pred CcccccCCCCCCCCcccccccccCCHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhcCCCccCCccccccccccHHHHH
Q 038941 181 PAKTAQNIEPETPSDWWGKSLAVLNLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGLVVRDPQLVKGSLLDLELQK 260 (615)
Q Consensus 181 ~~~~~~~~~~~~~~~WW~EDl~~Ls~d~~~rvI~am~~~g~~ee~V~~al~~YakkwL~~~~~~~~~~r~~~~~~~~~~~ 260 (615)
...+||..|+.+.+..+|+.. ..+|+.|++|++ +|+. +++..| ..
T Consensus 44 ---------------~~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~----~Wv~----~d~~~R---------~~ 88 (105)
T 2eqx_A 44 ---------------QNTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIE----AWIN----FNKEER---------EA 88 (105)
T ss_dssp ---------------HTSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHH----HHHH----TTHHHH---------HH
T ss_pred ---------------HhcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHH----HHHH----cCHHHH---------HH
Confidence 115789999999999999984 568899999999 5554 666555 35
Q ss_pred HHHHHHHHHH
Q 038941 261 KQRVIVEAIV 270 (615)
Q Consensus 261 ~~r~LLEtIv 270 (615)
+...||++|+
T Consensus 89 ~~~~Ll~~VR 98 (105)
T 2eqx_A 89 FAESLRTSLK 98 (105)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 6788888886
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.89 E-value=0.014 Score=57.13 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=69.7
Q ss_pred eEEEEEcCEEEEeccccccccc-HHHHHhhcCCCC-----CCcceEEecCCCCCHHHHHHHHHHHhcCccccchh-hhhh
Q 038941 39 DLTIEVGASSFALHKFPLVSRS-GRIRKLLLEAKD-----SKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS-NVAT 111 (615)
Q Consensus 39 DV~l~V~~~~F~~HK~vLas~S-~yfr~mf~~~~e-----~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~-NV~~ 111 (615)
=|+|.|||..|..-+..|.... .+|.+||....+ ....++-| |- .|..|+.|++|.-+|++.+..+ .+..
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DR--DP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CS--CSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cC--ChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 3678999999999999998775 488899875311 12234544 33 4589999999999999987432 3356
Q ss_pred HHHhhhhcccchhhhhchHHHHHHHHHHH
Q 038941 112 IRCVAHFLEMTEDFAEKNLEARAEAYLKE 140 (615)
Q Consensus 112 L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~ 140 (615)
++.-|+|+++.+ |+..|.+-+.+
T Consensus 90 l~eEA~FygL~~------Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITS------LIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHCCcHH------HHHHHHHHHHH
Confidence 999999999997 77777776654
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.60 E-value=0.011 Score=52.77 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=61.3
Q ss_pred EEEEEcCEEEEecccccccccH-HHHHhhcCCC--CCCcceEEecCCCCCHHHHHHHHHHHhcCccccch-hhhhhHHHh
Q 038941 40 LTIEVGASSFALHKFPLVSRSG-RIRKLLLEAK--DSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTL-SNVATIRCV 115 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLas~S~-yfr~mf~~~~--e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~-~NV~~L~~A 115 (615)
|+|.|||+.|...+..|....+ .|.+||.... .....++-|. = .|..|..|++|.-+|++.+.. -.+..++.-
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD-R--dp~~F~~ILnylR~G~l~~p~~~~~~~~~~E 83 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD-R--HPGVFAQIINYYRSGKLHYPTDVCGPLFEEE 83 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC-S--CTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe-c--ChHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 7899999999999999987643 4566765421 1233455553 3 358999999999999998754 256789999
Q ss_pred hhhcccchh
Q 038941 116 AHFLEMTED 124 (615)
Q Consensus 116 A~~Lqm~e~ 124 (615)
|+|.++++.
T Consensus 84 a~fy~i~~~ 92 (115)
T 3kvt_A 84 LEFWGLDSN 92 (115)
T ss_dssp HHHHTCCGG
T ss_pred HHHhCCChH
Confidence 999999983
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=93.47 E-value=0.061 Score=48.62 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=56.4
Q ss_pred eEEEEEcCEEEEecccccccccHHHHHhhcCC-----CCCCcceEEecCCCCCHHHHHHHHHHHhcCccccchh-hhhhH
Q 038941 39 DLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-----KDSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS-NVATI 112 (615)
Q Consensus 39 DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-----~e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~-NV~~L 112 (615)
=|+|.|||+.|..-+..|...-+- |+... ......++-|. = .|..|+.|++|.-+|++.+..+ .+..+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S---~L~~~~~~~~~~~~~g~~FiD-R--dp~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD-R--DPEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTS---STTSSGGGGTBCSSSCSEEEC-S--CHHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCc---eecccCCcccccCCCCcEEEc-C--ChHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 478899999999998888654321 22221 11122344442 2 5799999999999999886443 46889
Q ss_pred HHhhhhcccch
Q 038941 113 RCVAHFLEMTE 123 (615)
Q Consensus 113 ~~AA~~Lqm~e 123 (615)
+.-|+|+++++
T Consensus 88 ~~Ea~fy~i~~ 98 (124)
T 1s1g_A 88 DDELAFYGILP 98 (124)
T ss_dssp HHHHHHTTCCG
T ss_pred HHHHHHcCCCh
Confidence 99999999997
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=91.93 E-value=0.16 Score=44.22 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=57.1
Q ss_pred EEEEEcCEEEEecccccccccH-HHHHhhcCC--CCCCcceEEecCCCCCHHHHHHHHHHHhc-Cccccch-hhhhhHHH
Q 038941 40 LTIEVGASSFALHKFPLVSRSG-RIRKLLLEA--KDSKVSRVNLSAVPGGAEAFELAAKFCYG-INVELTL-SNVATIRC 114 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLas~S~-yfr~mf~~~--~e~~~~~v~L~~~pGga~~felv~~FcY~-~~i~it~-~NV~~L~~ 114 (615)
|+|.|||+.|...+..|...-+ .|.+|+... -.....++-|. = .|..|+.|++|.-+ |++.+.. -.+..++.
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD-R--dp~~F~~ILnflR~~G~l~~p~~~~~~~~~~ 79 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD-R--NRPSFDAILYFYQSGGRLRRPVNVPLDVFSE 79 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC-S--CSTTHHHHHHHHHTTSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc-C--ChHHHHHHHHHHhcCCcccCCCCCCHHHHHH
Confidence 7899999999999988865421 334444321 11233455553 3 35899999999998 8987633 24567999
Q ss_pred hhhhcccchh
Q 038941 115 VAHFLEMTED 124 (615)
Q Consensus 115 AA~~Lqm~e~ 124 (615)
-|+|.++.+.
T Consensus 80 Ea~fy~i~~~ 89 (100)
T 1t1d_A 80 EIKFYELGEN 89 (100)
T ss_dssp HHHHTTCCHH
T ss_pred HHHHcCCCHH
Confidence 9999999983
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=91.30 E-value=0.084 Score=48.72 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=57.4
Q ss_pred eeEEEEEcCEEEEecccccccccHHHHHhhcCC-C----CCCcceEEecCCCCCHHHHHHHHHHHhcCccccchh-hhhh
Q 038941 38 SDLTIEVGASSFALHKFPLVSRSGRIRKLLLEA-K----DSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS-NVAT 111 (615)
Q Consensus 38 ~DV~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~----e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~-NV~~ 111 (615)
.=|+|.|||+.|...+..|...-+- |+... + .....++-|. = .+..|+.|++|.-+|++.+..+ .+..
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P~S---~L~~~~~~~~~~~~~g~yFiD-R--dp~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD-R--DPEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCTTS---TTTSGGGGGSEETTTTEEEEC-S--CHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CEEEEEECCEEEEeeHHHHhcCCCe---eecccCCcccccCCCCeEEEe-C--CcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 4478899999999998888654321 23221 1 1123345443 3 5799999999999999887443 4788
Q ss_pred HHHhhhhcccchh
Q 038941 112 IRCVAHFLEMTED 124 (615)
Q Consensus 112 L~~AA~~Lqm~e~ 124 (615)
++.-|+|+++++.
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 9999999999983
No 36
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=90.55 E-value=0.086 Score=46.15 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=55.5
Q ss_pred EEEEEcCEEEEecccccccccHHHHHhhcCC-C----CCCcceEEecCCCCCHHHHHHHHHHHhcCccccchh-hhhhHH
Q 038941 40 LTIEVGASSFALHKFPLVSRSGRIRKLLLEA-K----DSKVSRVNLSAVPGGAEAFELAAKFCYGINVELTLS-NVATIR 113 (615)
Q Consensus 40 V~l~V~~~~F~~HK~vLas~S~yfr~mf~~~-~----e~~~~~v~L~~~pGga~~felv~~FcY~~~i~it~~-NV~~L~ 113 (615)
|+|.|||+.|...+..|....+- |+... + .....++-|. = .|+.|+.|++|.-+|++.+..+ .+..++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s---~L~~~~~~~~~~~~~~~~FiD-R--dp~~F~~ILnflR~g~l~~p~~~~~~~l~ 75 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDT---LLGSSERDFFYHPETQQYFFD-R--DPDIFRHILNFYRTGKLHYPRHECISAYD 75 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSS---STTSGGGGGGEEGGGTEEEEC-S--CTTTHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCc---cccccCCcccccCCCCcEEEe-C--CcHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 78999999999998887654321 22221 1 1122345443 3 4589999999999999876442 467899
Q ss_pred Hhhhhcccch
Q 038941 114 CVAHFLEMTE 123 (615)
Q Consensus 114 ~AA~~Lqm~e 123 (615)
.-|+|.++++
T Consensus 76 ~Ea~fy~i~~ 85 (105)
T 1nn7_A 76 EELAFFGLIP 85 (105)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHcCCCH
Confidence 9999999997
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.29 E-value=2.9 Score=32.18 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 038941 533 ENRELKLEVARMRMRLTDLEKDHVSMKQELVR 564 (615)
Q Consensus 533 en~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k 564 (615)
+.+.||.|++.+|.|+.+|.+++...+..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888888888888888888877777653
No 38
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=72.28 E-value=0.87 Score=29.91 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.5
Q ss_pred hhhhhHHHhhhhcccch
Q 038941 107 SNVATIRCVAHFLEMTE 123 (615)
Q Consensus 107 ~NV~~L~~AA~~Lqm~e 123 (615)
.||+.|+.||+||+=-|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 59999999999998543
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=71.48 E-value=7.8 Score=29.46 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=32.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q 038941 529 SVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVRS 565 (615)
Q Consensus 529 ~~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k~ 565 (615)
.++.||-.||.|++.=...++.||.|-+.||.-+..+
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4678999999999999999999999999999876443
No 40
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=69.94 E-value=8.4 Score=29.06 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcC
Q 038941 533 ENRELKLEVARMRMRLTDLEKDHVSMKQELVRSH 566 (615)
Q Consensus 533 en~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k~~ 566 (615)
..-.||.-.+.+-+||.+||..|..+.++++++.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4556888899999999999999999999998873
No 41
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=54.60 E-value=13 Score=40.76 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=55.4
Q ss_pred eEEEEEcCEEEEecccccccccHH-HHHhhcCC--CCCCcceEEecCCCCCHHHHHHHHHHHhc-Cccccchh-hhhhHH
Q 038941 39 DLTIEVGASSFALHKFPLVSRSGR-IRKLLLEA--KDSKVSRVNLSAVPGGAEAFELAAKFCYG-INVELTLS-NVATIR 113 (615)
Q Consensus 39 DV~l~V~~~~F~~HK~vLas~S~y-fr~mf~~~--~e~~~~~v~L~~~pGga~~felv~~FcY~-~~i~it~~-NV~~L~ 113 (615)
=|+|.|||..|...+.-|...-+- +-+++... -+....++-+ |= .|+.|+.+++|..+ |++.+..+ .+..++
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR--~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~ 129 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DR--NRPSFDAILYYYQSGGRLRRPVNVPLDIFS 129 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CS--CHHHHHHHHHHHHHTSCCCCCTTSCHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cC--ChHHHHHHHHHHhcCCccccCCcccHHHHH
Confidence 467899999999988877543211 11222211 1122345554 22 57999999999999 99876432 355688
Q ss_pred Hhhhhcccchh
Q 038941 114 CVAHFLEMTED 124 (615)
Q Consensus 114 ~AA~~Lqm~e~ 124 (615)
.-|+|.++.+.
T Consensus 130 ~E~~f~~i~~~ 140 (514)
T 2r9r_B 130 EEIRFYELGEE 140 (514)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHhcCCCHH
Confidence 99999999984
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.93 E-value=18 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=27.0
Q ss_pred cchhhhHhhHHHHHHHHHHHHHHHHHHHHh
Q 038941 526 NYASVRRENRELKLEVARMRMRLTDLEKDH 555 (615)
Q Consensus 526 ~~~~~~ren~~Lk~el~~m~~rv~eLEk~~ 555 (615)
++..+++||++||..++.++.++.||.+..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998764
No 43
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=45.70 E-value=12 Score=33.03 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=22.4
Q ss_pred ccCCCCChhHHHHHHHhcCcccccccchhHHHHHHHHhhCCC
Q 038941 399 ALDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPN 440 (615)
Q Consensus 399 A~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLk~Hp~ 440 (615)
..|.+.+|.++...+ .++++|||-||-+||.
T Consensus 92 ~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 92 VHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp SSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred CCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 445667777775554 6789999999999984
No 44
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.69 E-value=23 Score=30.28 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhh
Q 038941 539 LEVARMRMRLTDLEKDHVSMKQELVR 564 (615)
Q Consensus 539 ~el~~m~~rv~eLEk~~~~mk~~~~k 564 (615)
.||+.||..|.+||..+..||+..+.
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq~YEe 75 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKDAYEE 75 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998753
No 45
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.51 E-value=32 Score=26.57 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcC
Q 038941 534 NRELKLEVARMRMRLTDLEKDHVSMKQELVRSH 566 (615)
Q Consensus 534 n~~Lk~el~~m~~rv~eLEk~~~~mk~~~~k~~ 566 (615)
...||.-=..+-.+|.+||..|..|.++++++.
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777899999999999999998874
No 46
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=33.00 E-value=38 Score=27.71 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=28.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 038941 530 VRRENRELKLEVARMRMRLTDLEKDHVSMKQEL 562 (615)
Q Consensus 530 ~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~ 562 (615)
++.|-+.||..+..+-.|+..||.|+.-+|+-.
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466889999999999999999999988777754
No 47
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=29.00 E-value=56 Score=29.26 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCccccchhhhhhHHHhhhhcccchhhhhchHHHHHHHHHHHhh
Q 038941 89 AFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNLEARAEAYLKEMV 142 (615)
Q Consensus 89 ~felv~~FcY~~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~l 142 (615)
..+.+.+|+-. .++++|+..++..|+..+.++ |.+.|..|+.+.+
T Consensus 120 l~~~c~~~l~~---~l~~~n~~~~~~~A~~~~~~~------L~~~~~~~i~~~~ 164 (172)
T 3htm_A 120 LKVMCEDALCS---NLSVENAAEILILADLHSADQ------LKTQAVDFINYHA 164 (172)
T ss_dssp HHHHHHHHHHH---TCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH---hCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 44445555443 578999999999999999987 9999999998764
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.98 E-value=1e+02 Score=25.58 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=20.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHH
Q 038941 531 RRENRELKLEVARMRMRLTDLEKD 554 (615)
Q Consensus 531 ~ren~~Lk~el~~m~~rv~eLEk~ 554 (615)
-+..+.|-.||..+|.||+|||.|
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999977
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.06 E-value=1.3e+02 Score=23.41 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 038941 532 RENRELKLEVARMRMRLTDLEKDHVSMKQEL 562 (615)
Q Consensus 532 ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~ 562 (615)
.+.+.|+.+-..++.++..|++|...+|+-|
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666655555443
No 50
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.24 E-value=58 Score=24.53 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhhHHHHhhcCCCcchhhHHhHhhcc
Q 038941 545 RMRLTDLEKDHVSMKQELVRSHPANKLFKSLAKKLSK 581 (615)
Q Consensus 545 ~~rv~eLEk~~~~mk~~~~k~~~~~~~~~s~~kkl~r 581 (615)
|.++.|||++....|+.+.|+.-.+.++.++.=.|||
T Consensus 13 Rkk~eeler~lrk~kk~iKklEdeNPWLGNIkGIlgk 49 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEEDNPWLGNIKGIIGK 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhhhhhhhcC
Confidence 4455555555555555554443334455555544443
No 51
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.56 E-value=1.7e+02 Score=21.15 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=26.0
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 038941 528 ASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELV 563 (615)
Q Consensus 528 ~~~~ren~~Lk~el~~m~~rv~eLEk~~~~mk~~~~ 563 (615)
+++..||+.||..--.-+.-+.=||||...+++.++
T Consensus 13 aslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 13 ASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 456677888876655566677888888888777654
No 52
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.16 E-value=1.3e+02 Score=20.18 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=15.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHH
Q 038941 529 SVRRENRELKLEVARMRMRLTDLE 552 (615)
Q Consensus 529 ~~~ren~~Lk~el~~m~~rv~eLE 552 (615)
.+.+|+..||.|+..++..+..|.
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665553
No 53
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=21.10 E-value=2.8e+02 Score=22.13 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred cCCCCChhHHHHHHHhcCcccccccchhHHHHHHHHhhCCC-CCHHHhhhhccccc--cccCCHHH
Q 038941 400 LDSNLMPSKFIALAELLPDHARIVSDGLYRAADIFLKVHPN-IKDSERYRLCKTID--CQKLSQEA 462 (615)
Q Consensus 400 ~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLk~Hp~-lse~Er~~lC~~md--c~KLS~EA 462 (615)
.|..+....|..+...- ....+.+.+|.+.|=+.+.+ |+..|=.++++.+. ..+++.+.
T Consensus 21 ~~g~i~~~eF~~~~~~~----~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 82 (109)
T 3fs7_A 21 AADSFNYKSFFSTVGLS----SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82 (109)
T ss_dssp STTCCCHHHHHHHHTCT----TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred CCCcCcHHHHHHHHhcC----CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence 68899999999987643 33456688888888777765 99999988888774 45666554
Done!