Query 038944
Match_columns 334
No_of_seqs 250 out of 2207
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.1E-28 1.7E-32 238.9 16.2 167 159-333 131-324 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.2E-22 4E-27 207.6 13.8 151 157-315 129-290 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 7.5E-23 2.6E-27 218.5 10.9 159 153-318 121-287 (1249)
4 3qfl_A MLA10; coiled-coil, (CC 99.8 2.4E-19 8.2E-24 139.8 9.3 83 3-98 1-85 (115)
5 1z6t_A APAF-1, apoptotic prote 99.8 2.8E-19 9.4E-24 177.7 10.5 144 154-307 122-274 (591)
6 1w5s_A Origin recognition comp 99.3 1.3E-11 4.4E-16 116.6 9.6 145 154-303 20-192 (412)
7 2qby_B CDC6 homolog 3, cell di 99.1 7.4E-11 2.5E-15 110.4 8.3 143 155-301 19-175 (384)
8 1fnn_A CDC6P, cell division co 99.1 1.1E-09 3.6E-14 102.5 13.5 149 154-306 15-175 (389)
9 2qby_A CDC6 homolog 1, cell di 99.1 1.1E-10 3.7E-15 108.9 5.9 146 153-303 17-176 (386)
10 2v1u_A Cell division control p 99.1 5.8E-10 2E-14 104.0 10.9 142 154-300 17-177 (387)
11 2qen_A Walker-type ATPase; unk 99.0 6.3E-10 2.2E-14 102.3 8.6 137 154-302 10-176 (350)
12 2fna_A Conserved hypothetical 98.9 3E-09 1E-13 97.9 8.1 136 154-302 11-182 (357)
13 2chg_A Replication factor C sm 98.7 1.3E-08 4.3E-13 86.9 7.0 118 156-301 17-143 (226)
14 1njg_A DNA polymerase III subu 98.7 3.7E-08 1.3E-12 85.0 9.9 136 156-301 23-167 (250)
15 1sxj_B Activator 1 37 kDa subu 98.5 8.6E-08 3E-12 87.0 5.5 120 156-300 21-147 (323)
16 3te6_A Regulatory protein SIR3 98.5 3.5E-07 1.2E-11 83.3 8.8 112 158-273 22-143 (318)
17 1iqp_A RFCS; clamp loader, ext 98.3 3.5E-07 1.2E-11 83.1 4.8 121 155-300 24-150 (327)
18 1jbk_A CLPB protein; beta barr 98.3 3.6E-07 1.2E-11 75.8 3.8 46 155-202 21-66 (195)
19 3h4m_A Proteasome-activating n 98.2 2.1E-06 7.1E-11 76.7 7.3 49 154-202 15-74 (285)
20 3ec2_A DNA replication protein 98.1 2.9E-06 1E-10 70.5 4.6 117 163-300 21-143 (180)
21 3syl_A Protein CBBX; photosynt 98.0 5.7E-06 2E-10 74.7 5.6 125 157-301 32-180 (309)
22 2chq_A Replication factor C sm 98.0 1.5E-05 5.1E-10 71.9 8.0 121 156-301 17-143 (319)
23 3n70_A Transport activator; si 98.0 1.4E-05 4.9E-10 64.0 6.9 46 157-202 2-47 (145)
24 2qz4_A Paraplegin; AAA+, SPG7, 97.9 1.7E-05 5.8E-10 69.6 7.7 48 155-202 5-62 (262)
25 1jr3_A DNA polymerase III subu 97.9 4.5E-05 1.5E-09 70.5 10.7 46 156-202 16-61 (373)
26 3eie_A Vacuolar protein sortin 97.9 2.3E-05 7.7E-10 71.5 8.2 49 154-202 16-74 (322)
27 3u61_B DNA polymerase accessor 97.9 5E-05 1.7E-09 69.0 9.4 118 155-301 25-147 (324)
28 3co5_A Putative two-component 97.8 1.4E-05 4.7E-10 63.9 4.5 47 156-202 4-50 (143)
29 1d2n_A N-ethylmaleimide-sensit 97.8 0.00013 4.4E-09 64.6 11.1 48 155-202 32-87 (272)
30 2w58_A DNAI, primosome compone 97.8 2.4E-05 8.4E-10 66.0 6.1 88 164-273 37-126 (202)
31 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00014 4.6E-09 66.4 11.4 48 155-202 11-68 (322)
32 2z4s_A Chromosomal replication 97.8 1.8E-05 6E-10 75.5 5.6 121 157-299 106-236 (440)
33 3uk6_A RUVB-like 2; hexameric 97.8 0.00018 6.2E-09 66.4 11.9 48 155-202 43-93 (368)
34 3cf0_A Transitional endoplasmi 97.7 0.00024 8.1E-09 64.0 11.8 48 155-202 14-72 (301)
35 3d8b_A Fidgetin-like protein 1 97.7 4.9E-05 1.7E-09 70.4 7.3 47 156-202 84-140 (357)
36 1sxj_D Activator 1 41 kDa subu 97.7 2.5E-05 8.4E-10 71.7 5.1 135 155-300 36-173 (353)
37 1sxj_E Activator 1 40 kDa subu 97.7 8.9E-05 3E-09 68.1 8.2 44 156-201 14-58 (354)
38 2zan_A Vacuolar protein sortin 97.7 0.00022 7.5E-09 68.0 10.8 49 154-202 132-190 (444)
39 3vfd_A Spastin; ATPase, microt 97.6 0.00011 3.9E-09 68.6 8.1 49 154-202 113-171 (389)
40 2qp9_X Vacuolar protein sortin 97.6 9.7E-05 3.3E-09 68.3 7.5 48 155-202 50-107 (355)
41 2bjv_A PSP operon transcriptio 97.6 5.2E-05 1.8E-09 66.9 4.7 47 156-202 6-52 (265)
42 2p65_A Hypothetical protein PF 97.6 6E-05 2.1E-09 62.0 4.8 46 155-202 21-66 (187)
43 3pvs_A Replication-associated 97.6 0.00026 9E-09 67.5 9.6 46 155-202 25-73 (447)
44 1hqc_A RUVB; extended AAA-ATPa 97.5 4.3E-05 1.5E-09 69.3 3.7 48 155-202 11-61 (324)
45 3hu3_A Transitional endoplasmi 97.5 0.00016 5.3E-09 69.8 7.0 47 156-202 204-261 (489)
46 1l8q_A Chromosomal replication 97.5 8.3E-05 2.8E-09 67.6 4.8 37 166-202 24-60 (324)
47 1ojl_A Transcriptional regulat 97.5 0.00037 1.3E-08 63.0 8.8 47 156-202 2-48 (304)
48 3b9p_A CG5977-PA, isoform A; A 97.4 0.00015 5.2E-09 64.8 5.8 48 155-202 20-77 (297)
49 3pxg_A Negative regulator of g 97.3 0.00028 9.5E-09 67.7 6.9 45 156-202 180-224 (468)
50 3lw7_A Adenylate kinase relate 97.3 0.0011 3.6E-08 53.8 9.5 105 180-303 2-115 (179)
51 1sxj_C Activator 1 40 kDa subu 97.3 0.00069 2.3E-08 62.0 9.1 45 156-202 25-69 (340)
52 4fcw_A Chaperone protein CLPB; 97.3 0.00061 2.1E-08 61.2 8.7 46 157-202 18-70 (311)
53 2cvh_A DNA repair and recombin 97.3 0.0017 5.9E-08 54.9 10.8 86 178-272 19-115 (220)
54 2ce7_A Cell division protein F 97.3 0.00036 1.2E-08 66.9 7.1 48 155-202 15-72 (476)
55 2gno_A DNA polymerase III, gam 97.3 0.0012 3.9E-08 59.7 9.8 134 160-318 1-140 (305)
56 1sxj_A Activator 1 95 kDa subu 97.3 0.00017 5.9E-09 70.1 4.5 48 155-202 38-100 (516)
57 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0024 8.1E-08 64.9 12.3 45 155-201 185-229 (758)
58 1lv7_A FTSH; alpha/beta domain 97.2 0.00035 1.2E-08 61.1 5.3 48 155-202 11-68 (257)
59 3t15_A Ribulose bisphosphate c 97.0 0.00063 2.1E-08 61.0 5.4 25 178-202 35-59 (293)
60 3pfi_A Holliday junction ATP-d 96.9 0.00043 1.5E-08 63.1 3.6 48 155-202 28-78 (338)
61 1a5t_A Delta prime, HOLB; zinc 96.9 0.0064 2.2E-07 55.4 11.3 40 162-202 8-47 (334)
62 3pxi_A Negative regulator of g 96.9 0.0022 7.6E-08 65.1 9.0 46 155-202 179-224 (758)
63 4b4t_L 26S protease subunit RP 96.9 0.0014 4.9E-08 61.9 6.6 48 155-202 180-238 (437)
64 4b4t_K 26S protease regulatory 96.9 0.0013 4.5E-08 62.0 6.4 54 154-209 170-234 (428)
65 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00074 2.5E-08 61.2 4.1 69 179-273 123-193 (331)
66 4b4t_J 26S protease regulatory 96.8 0.0013 4.5E-08 61.4 5.8 53 155-209 147-210 (405)
67 4b4t_H 26S protease regulatory 96.8 0.0014 4.8E-08 62.2 5.9 52 156-209 209-271 (467)
68 4b4t_M 26S protease regulatory 96.8 0.0013 4.4E-08 62.3 5.4 47 155-201 180-237 (434)
69 2c9o_A RUVB-like 1; hexameric 96.8 0.002 7E-08 61.4 6.8 49 154-202 35-86 (456)
70 2qgz_A Helicase loader, putati 96.8 0.00089 3E-08 60.5 4.0 39 164-202 136-175 (308)
71 3m6a_A ATP-dependent protease 96.7 0.0031 1.1E-07 61.6 7.9 45 157-201 82-130 (543)
72 3cf2_A TER ATPase, transitiona 96.7 0.0025 8.4E-08 64.8 7.3 94 155-272 203-307 (806)
73 1n0w_A DNA repair protein RAD5 96.7 0.0063 2.2E-07 52.2 9.0 95 178-273 23-130 (243)
74 1ypw_A Transitional endoplasmi 96.7 0.0014 4.7E-08 67.1 5.2 53 155-209 203-266 (806)
75 3c8u_A Fructokinase; YP_612366 96.7 0.0014 4.9E-08 55.4 4.5 37 165-201 8-44 (208)
76 1rz3_A Hypothetical protein rb 96.7 0.0021 7.1E-08 54.1 5.4 41 161-201 3-44 (201)
77 3pxi_A Negative regulator of g 96.6 0.0017 5.7E-08 66.1 5.5 47 156-202 491-544 (758)
78 3bos_A Putative DNA replicatio 96.6 0.0015 5E-08 55.9 4.1 59 156-218 28-89 (242)
79 1ofh_A ATP-dependent HSL prote 96.5 0.0012 4.2E-08 58.9 3.4 47 156-202 15-73 (310)
80 1in4_A RUVB, holliday junction 96.5 0.0016 5.5E-08 59.5 3.6 47 156-202 25-74 (334)
81 2dhr_A FTSH; AAA+ protein, hex 96.4 0.004 1.4E-07 60.0 6.4 50 153-202 28-87 (499)
82 1v5w_A DMC1, meiotic recombina 96.4 0.016 5.6E-07 53.0 10.2 95 177-272 120-229 (343)
83 3hr8_A Protein RECA; alpha and 96.4 0.0046 1.6E-07 56.9 6.5 87 177-272 59-149 (356)
84 1qvr_A CLPB protein; coiled co 96.4 0.0033 1.1E-07 64.8 6.1 46 157-202 559-611 (854)
85 1odf_A YGR205W, hypothetical 3 96.4 0.0035 1.2E-07 56.1 5.3 27 175-201 27-53 (290)
86 4b4t_I 26S protease regulatory 96.4 0.0037 1.3E-07 58.8 5.6 52 156-209 182-244 (437)
87 3hws_A ATP-dependent CLP prote 96.3 0.003 1E-07 58.2 4.7 45 158-202 17-74 (363)
88 2z43_A DNA repair and recombin 96.3 0.014 5E-07 52.8 9.2 94 178-272 106-213 (324)
89 2i1q_A DNA repair and recombin 96.3 0.016 5.3E-07 52.4 9.3 95 177-272 96-214 (322)
90 3kb2_A SPBC2 prophage-derived 96.3 0.0021 7.3E-08 52.0 3.1 22 180-201 2-23 (173)
91 1qhx_A CPT, protein (chloramph 96.2 0.0024 8.1E-08 52.2 3.1 22 180-201 4-25 (178)
92 1zp6_A Hypothetical protein AT 96.2 0.0026 8.8E-08 52.6 3.4 24 179-202 9-32 (191)
93 2r62_A Cell division protease 96.2 0.0019 6.4E-08 56.7 2.6 49 154-202 9-67 (268)
94 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.012 4E-07 56.8 8.2 43 157-203 23-65 (500)
95 3vaa_A Shikimate kinase, SK; s 96.2 0.0028 9.6E-08 53.1 3.3 23 179-201 25-47 (199)
96 1qvr_A CLPB protein; coiled co 96.1 0.0032 1.1E-07 64.9 4.2 46 155-202 169-214 (854)
97 1knq_A Gluconate kinase; ALFA/ 96.1 0.004 1.4E-07 50.8 4.0 24 178-201 7-30 (175)
98 1xp8_A RECA protein, recombina 96.1 0.01 3.5E-07 54.9 7.0 85 178-271 73-161 (366)
99 1kgd_A CASK, peripheral plasma 96.1 0.003 1E-07 52.1 3.0 23 180-202 6-28 (180)
100 1ly1_A Polynucleotide kinase; 96.1 0.0034 1.1E-07 51.2 3.3 22 180-201 3-24 (181)
101 1kag_A SKI, shikimate kinase I 96.0 0.0026 9E-08 51.7 2.5 22 180-201 5-26 (173)
102 3jvv_A Twitching mobility prot 96.0 0.014 4.6E-07 53.8 7.3 111 179-306 123-237 (356)
103 2b8t_A Thymidine kinase; deoxy 96.0 0.0021 7.2E-08 55.2 1.7 111 179-299 12-125 (223)
104 2x8a_A Nuclear valosin-contain 96.0 0.0046 1.6E-07 54.8 4.0 46 156-202 10-67 (274)
105 1nks_A Adenylate kinase; therm 96.0 0.004 1.4E-07 51.3 3.4 22 180-201 2-23 (194)
106 3uie_A Adenylyl-sulfate kinase 96.0 0.0046 1.6E-07 51.8 3.6 24 178-201 24-47 (200)
107 1u94_A RECA protein, recombina 95.9 0.0077 2.6E-07 55.5 5.3 85 178-271 62-150 (356)
108 3tr0_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 52.1 3.0 23 180-202 8-30 (205)
109 2r44_A Uncharacterized protein 95.9 0.016 5.6E-07 52.4 7.3 42 156-201 27-68 (331)
110 3io5_A Recombination and repai 95.9 0.033 1.1E-06 50.3 9.1 84 180-272 29-121 (333)
111 2px0_A Flagellar biosynthesis 95.9 0.068 2.3E-06 47.8 11.2 24 178-201 104-127 (296)
112 2zr9_A Protein RECA, recombina 95.9 0.013 4.4E-07 53.8 6.5 87 177-272 59-149 (349)
113 3asz_A Uridine kinase; cytidin 95.9 0.0051 1.7E-07 51.8 3.5 24 178-201 5-28 (211)
114 3trf_A Shikimate kinase, SK; a 95.8 0.0044 1.5E-07 50.9 3.0 23 179-201 5-27 (185)
115 2rhm_A Putative kinase; P-loop 95.8 0.0055 1.9E-07 50.6 3.6 23 179-201 5-27 (193)
116 4gp7_A Metallophosphoesterase; 95.8 0.0045 1.5E-07 50.6 3.0 54 254-307 93-166 (171)
117 4eun_A Thermoresistant glucoki 95.8 0.0048 1.6E-07 51.7 3.3 24 178-201 28-51 (200)
118 2if2_A Dephospho-COA kinase; a 95.8 0.0045 1.5E-07 51.8 3.1 22 180-201 2-23 (204)
119 1pzn_A RAD51, DNA repair and r 95.8 0.029 9.9E-07 51.4 8.7 97 177-274 129-243 (349)
120 3t61_A Gluconokinase; PSI-biol 95.8 0.0036 1.2E-07 52.4 2.4 24 179-202 18-41 (202)
121 1um8_A ATP-dependent CLP prote 95.8 0.0079 2.7E-07 55.6 4.9 46 157-202 22-95 (376)
122 1ixz_A ATP-dependent metallopr 95.8 0.0054 1.8E-07 53.3 3.5 47 155-202 15-72 (254)
123 1uf9_A TT1252 protein; P-loop, 95.8 0.006 2.1E-07 50.8 3.7 25 177-201 6-30 (203)
124 2jaq_A Deoxyguanosine kinase; 95.8 0.0048 1.6E-07 51.4 3.0 21 181-201 2-22 (205)
125 2qt1_A Nicotinamide riboside k 95.8 0.0063 2.2E-07 51.1 3.8 25 177-201 19-43 (207)
126 2bdt_A BH3686; alpha-beta prot 95.8 0.0054 1.8E-07 50.7 3.3 22 180-201 3-24 (189)
127 2j41_A Guanylate kinase; GMP, 95.8 0.0057 1.9E-07 51.1 3.4 24 179-202 6-29 (207)
128 1ye8_A Protein THEP1, hypothet 95.8 0.0051 1.8E-07 50.8 3.0 22 181-202 2-23 (178)
129 1kht_A Adenylate kinase; phosp 95.7 0.0051 1.8E-07 50.6 3.0 22 180-201 4-25 (192)
130 1zuh_A Shikimate kinase; alpha 95.7 0.0053 1.8E-07 49.7 3.0 25 177-201 5-29 (168)
131 1cke_A CK, MSSA, protein (cyti 95.7 0.0055 1.9E-07 52.1 3.1 22 180-201 6-27 (227)
132 1uj2_A Uridine-cytidine kinase 95.7 0.0063 2.2E-07 53.0 3.5 25 177-201 20-44 (252)
133 3tau_A Guanylate kinase, GMP k 95.7 0.0063 2.2E-07 51.4 3.4 24 179-202 8-31 (208)
134 1sky_E F1-ATPase, F1-ATP synth 95.7 0.015 5.2E-07 55.3 6.3 63 168-232 141-204 (473)
135 3a00_A Guanylate kinase, GMP k 95.7 0.0048 1.6E-07 51.1 2.6 22 180-201 2-23 (186)
136 2ga8_A Hypothetical 39.9 kDa p 95.7 0.011 3.8E-07 54.2 5.2 43 159-201 2-46 (359)
137 2ck3_D ATP synthase subunit be 95.7 0.036 1.2E-06 52.7 8.7 65 167-233 142-207 (482)
138 1jjv_A Dephospho-COA kinase; P 95.7 0.0066 2.3E-07 50.9 3.4 22 180-201 3-24 (206)
139 3iij_A Coilin-interacting nucl 95.6 0.0054 1.8E-07 50.3 2.7 23 179-201 11-33 (180)
140 1ukz_A Uridylate kinase; trans 95.6 0.0076 2.6E-07 50.4 3.6 26 177-202 13-38 (203)
141 2c95_A Adenylate kinase 1; tra 95.6 0.007 2.4E-07 50.1 3.3 23 179-201 9-31 (196)
142 1y63_A LMAJ004144AAA protein; 95.6 0.0072 2.5E-07 49.9 3.4 24 178-201 9-32 (184)
143 1tev_A UMP-CMP kinase; ploop, 95.6 0.0073 2.5E-07 49.8 3.4 23 179-201 3-25 (196)
144 2qor_A Guanylate kinase; phosp 95.6 0.0059 2E-07 51.3 2.8 25 178-202 11-35 (204)
145 1lvg_A Guanylate kinase, GMP k 95.6 0.0054 1.8E-07 51.4 2.5 22 180-201 5-26 (198)
146 1via_A Shikimate kinase; struc 95.6 0.0054 1.8E-07 50.1 2.5 22 180-201 5-26 (175)
147 2ze6_A Isopentenyl transferase 95.6 0.0072 2.5E-07 52.8 3.4 23 180-202 2-24 (253)
148 1iy2_A ATP-dependent metallopr 95.6 0.0072 2.5E-07 53.4 3.4 49 153-202 37-96 (278)
149 2p5t_B PEZT; postsegregational 95.5 0.011 3.8E-07 51.5 4.6 39 164-202 14-55 (253)
150 2bbw_A Adenylate kinase 4, AK4 95.5 0.0072 2.5E-07 52.4 3.3 23 179-201 27-49 (246)
151 1xjc_A MOBB protein homolog; s 95.5 0.0073 2.5E-07 49.5 3.1 24 178-201 3-26 (169)
152 2kjq_A DNAA-related protein; s 95.5 0.0054 1.8E-07 49.1 2.3 25 178-202 35-59 (149)
153 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0079 2.7E-07 52.7 3.5 23 179-201 4-26 (260)
154 3fwy_A Light-independent proto 95.5 0.0076 2.6E-07 54.5 3.5 24 177-200 46-69 (314)
155 1fx0_B ATP synthase beta chain 95.5 0.039 1.3E-06 52.7 8.4 103 168-272 155-276 (498)
156 3tlx_A Adenylate kinase 2; str 95.5 0.012 3.9E-07 51.1 4.5 36 166-201 16-51 (243)
157 3cm0_A Adenylate kinase; ATP-b 95.5 0.0082 2.8E-07 49.3 3.3 22 180-201 5-26 (186)
158 3ice_A Transcription terminati 95.5 0.004 1.4E-07 57.8 1.5 53 167-221 163-216 (422)
159 2yvu_A Probable adenylyl-sulfa 95.5 0.0092 3.2E-07 49.2 3.6 24 178-201 12-35 (186)
160 3e70_C DPA, signal recognition 95.5 0.012 4.2E-07 53.5 4.7 25 177-201 127-151 (328)
161 1gvn_B Zeta; postsegregational 95.5 0.014 4.9E-07 51.9 5.1 25 177-201 31-55 (287)
162 3lda_A DNA repair protein RAD5 95.5 0.043 1.5E-06 51.3 8.5 94 178-272 177-283 (400)
163 3dm5_A SRP54, signal recogniti 95.4 0.084 2.9E-06 49.9 10.5 24 178-201 99-122 (443)
164 1g5t_A COB(I)alamin adenosyltr 95.4 0.011 3.8E-07 49.5 3.9 51 250-300 107-163 (196)
165 1znw_A Guanylate kinase, GMP k 95.4 0.0081 2.8E-07 50.6 3.2 23 179-201 20-42 (207)
166 2plr_A DTMP kinase, probable t 95.4 0.0086 2.9E-07 50.1 3.3 23 180-202 5-27 (213)
167 3aez_A Pantothenate kinase; tr 95.4 0.0094 3.2E-07 53.9 3.8 25 177-201 88-112 (312)
168 2iyv_A Shikimate kinase, SK; t 95.4 0.0059 2E-07 50.2 2.2 22 180-201 3-24 (184)
169 1qf9_A UMP/CMP kinase, protein 95.4 0.009 3.1E-07 49.1 3.3 23 179-201 6-28 (194)
170 2bwj_A Adenylate kinase 5; pho 95.4 0.0081 2.8E-07 49.8 3.0 23 179-201 12-34 (199)
171 2hf9_A Probable hydrogenase ni 95.4 0.017 5.7E-07 49.0 5.1 25 178-202 37-61 (226)
172 2ewv_A Twitching motility prot 95.4 0.032 1.1E-06 51.7 7.2 110 178-305 135-249 (372)
173 1e6c_A Shikimate kinase; phosp 95.4 0.007 2.4E-07 49.0 2.5 22 180-201 3-24 (173)
174 1gtv_A TMK, thymidylate kinase 95.3 0.0054 1.8E-07 51.6 1.8 22 180-201 1-22 (214)
175 2pbr_A DTMP kinase, thymidylat 95.3 0.0087 3E-07 49.3 3.0 21 181-201 2-22 (195)
176 2vli_A Antibiotic resistance p 95.3 0.0064 2.2E-07 49.8 2.2 24 179-202 5-28 (183)
177 3p32_A Probable GTPase RV1496/ 95.3 0.017 5.9E-07 53.0 5.3 37 165-201 65-101 (355)
178 2jeo_A Uridine-cytidine kinase 95.3 0.011 3.6E-07 51.3 3.7 24 178-201 24-47 (245)
179 3umf_A Adenylate kinase; rossm 95.3 0.011 3.7E-07 50.5 3.6 26 177-202 27-52 (217)
180 2pt5_A Shikimate kinase, SK; a 95.3 0.0094 3.2E-07 48.0 3.0 21 181-201 2-22 (168)
181 2xxa_A Signal recognition part 95.3 0.053 1.8E-06 51.2 8.5 25 177-201 98-122 (433)
182 1z6g_A Guanylate kinase; struc 95.3 0.0078 2.7E-07 51.3 2.5 24 179-202 23-46 (218)
183 2cdn_A Adenylate kinase; phosp 95.2 0.012 4.2E-07 49.1 3.7 23 179-201 20-42 (201)
184 1htw_A HI0065; nucleotide-bind 95.2 0.012 4E-07 47.6 3.4 24 178-201 32-55 (158)
185 2wsm_A Hydrogenase expression/ 95.2 0.012 4.2E-07 49.6 3.7 39 162-202 15-53 (221)
186 1g8p_A Magnesium-chelatase 38 95.2 0.0087 3E-07 54.4 2.9 46 155-202 23-68 (350)
187 3tqc_A Pantothenate kinase; bi 95.2 0.019 6.5E-07 52.0 5.1 25 177-201 90-114 (321)
188 4e22_A Cytidylate kinase; P-lo 95.2 0.011 3.6E-07 51.7 3.3 23 179-201 27-49 (252)
189 2f1r_A Molybdopterin-guanine d 95.2 0.0066 2.3E-07 49.8 1.8 22 180-201 3-24 (171)
190 1aky_A Adenylate kinase; ATP:A 95.1 0.011 3.9E-07 50.0 3.3 23 179-201 4-26 (220)
191 1nn5_A Similar to deoxythymidy 95.1 0.012 4.2E-07 49.4 3.4 23 179-201 9-31 (215)
192 2f6r_A COA synthase, bifunctio 95.1 0.013 4.4E-07 52.0 3.7 24 178-201 74-97 (281)
193 2grj_A Dephospho-COA kinase; T 95.1 0.013 4.6E-07 48.9 3.6 25 177-201 10-34 (192)
194 1g41_A Heat shock protein HSLU 95.1 0.02 6.7E-07 54.3 5.1 47 156-202 15-73 (444)
195 3ney_A 55 kDa erythrocyte memb 95.1 0.011 3.8E-07 49.6 3.0 25 178-202 18-42 (197)
196 1ex7_A Guanylate kinase; subst 95.1 0.0094 3.2E-07 49.6 2.5 21 181-201 3-23 (186)
197 1rj9_A FTSY, signal recognitio 95.1 0.013 4.5E-07 52.7 3.6 24 178-201 101-124 (304)
198 2wwf_A Thymidilate kinase, put 95.1 0.011 3.9E-07 49.5 3.0 23 179-201 10-32 (212)
199 1zu4_A FTSY; GTPase, signal re 95.1 0.025 8.6E-07 51.2 5.5 24 178-201 104-127 (320)
200 3kl4_A SRP54, signal recogniti 95.0 0.058 2E-06 50.9 8.0 24 178-201 96-119 (433)
201 1zd8_A GTP:AMP phosphotransfer 95.0 0.012 4.1E-07 50.2 3.1 23 179-201 7-29 (227)
202 1sq5_A Pantothenate kinase; P- 95.0 0.027 9.1E-07 50.7 5.5 25 177-201 78-102 (308)
203 1s96_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 50.2 3.1 24 179-202 16-39 (219)
204 2pez_A Bifunctional 3'-phospho 95.0 0.016 5.5E-07 47.4 3.5 23 179-201 5-27 (179)
205 4a74_A DNA repair and recombin 95.0 0.015 5E-07 49.4 3.4 48 178-225 24-75 (231)
206 2onk_A Molybdate/tungstate ABC 95.0 0.014 4.7E-07 50.7 3.2 24 177-201 23-46 (240)
207 1m7g_A Adenylylsulfate kinase; 95.0 0.016 5.4E-07 48.9 3.6 23 179-201 25-47 (211)
208 2z0h_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 48.3 3.1 21 181-201 2-22 (197)
209 2v54_A DTMP kinase, thymidylat 94.9 0.014 4.6E-07 48.7 3.0 24 179-202 4-27 (204)
210 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.075 2.6E-06 48.3 8.2 108 180-306 172-281 (330)
211 1vht_A Dephospho-COA kinase; s 94.9 0.017 5.7E-07 48.9 3.6 23 179-201 4-26 (218)
212 1vma_A Cell division protein F 94.9 0.025 8.5E-07 50.9 4.9 24 178-201 103-126 (306)
213 2ehv_A Hypothetical protein PH 94.9 0.014 4.8E-07 50.2 3.2 22 179-200 30-51 (251)
214 1zak_A Adenylate kinase; ATP:A 94.9 0.012 4.3E-07 49.9 2.8 23 179-201 5-27 (222)
215 2i3b_A HCR-ntpase, human cance 94.9 0.012 4.1E-07 49.1 2.6 21 181-201 3-23 (189)
216 3tif_A Uncharacterized ABC tra 94.9 0.014 4.6E-07 50.5 3.0 23 179-201 31-53 (235)
217 3thx_A DNA mismatch repair pro 94.9 0.019 6.4E-07 59.5 4.5 48 260-308 739-793 (934)
218 2pcj_A ABC transporter, lipopr 94.9 0.013 4.6E-07 50.1 2.9 22 180-201 31-52 (224)
219 2og2_A Putative signal recogni 94.9 0.026 9E-07 51.9 5.1 24 178-201 156-179 (359)
220 2yhs_A FTSY, cell division pro 94.8 0.029 1E-06 53.7 5.3 24 178-201 292-315 (503)
221 3lnc_A Guanylate kinase, GMP k 94.8 0.0098 3.3E-07 50.9 1.8 23 179-201 27-50 (231)
222 3b9q_A Chloroplast SRP recepto 94.8 0.018 6.2E-07 51.7 3.7 24 178-201 99-122 (302)
223 3fb4_A Adenylate kinase; psych 94.8 0.016 5.4E-07 48.9 3.1 21 181-201 2-22 (216)
224 1np6_A Molybdopterin-guanine d 94.8 0.017 5.7E-07 47.5 3.1 24 179-202 6-29 (174)
225 3b85_A Phosphate starvation-in 94.7 0.014 4.8E-07 49.5 2.5 22 180-201 23-44 (208)
226 2cbz_A Multidrug resistance-as 94.7 0.016 5.5E-07 50.1 3.0 23 179-201 31-53 (237)
227 1b0u_A Histidine permease; ABC 94.7 0.016 5.5E-07 50.9 3.0 23 179-201 32-54 (262)
228 3nwj_A ATSK2; P loop, shikimat 94.6 0.014 4.8E-07 51.0 2.5 22 180-201 49-70 (250)
229 3dl0_A Adenylate kinase; phosp 94.6 0.018 6.1E-07 48.6 3.1 21 181-201 2-22 (216)
230 3ake_A Cytidylate kinase; CMP 94.6 0.019 6.3E-07 47.9 3.1 21 181-201 4-24 (208)
231 3gfo_A Cobalt import ATP-bindi 94.6 0.017 5.8E-07 51.2 3.0 22 180-201 35-56 (275)
232 2ffh_A Protein (FFH); SRP54, s 94.6 0.043 1.5E-06 51.6 5.9 24 178-201 97-120 (425)
233 1ji0_A ABC transporter; ATP bi 94.6 0.017 6E-07 49.9 3.0 22 180-201 33-54 (240)
234 2d2e_A SUFC protein; ABC-ATPas 94.6 0.019 6.4E-07 50.1 3.2 22 180-201 30-51 (250)
235 1g6h_A High-affinity branched- 94.6 0.017 5.9E-07 50.5 3.0 23 179-201 33-55 (257)
236 3be4_A Adenylate kinase; malar 94.5 0.017 5.7E-07 49.0 2.7 23 179-201 5-27 (217)
237 1mv5_A LMRA, multidrug resista 94.5 0.02 6.7E-07 49.7 3.2 23 179-201 28-50 (243)
238 3l0o_A Transcription terminati 94.5 0.12 4.2E-06 47.9 8.5 53 166-220 163-216 (427)
239 2qe7_A ATP synthase subunit al 94.5 0.076 2.6E-06 50.7 7.3 109 168-281 152-274 (502)
240 2olj_A Amino acid ABC transpor 94.5 0.019 6.4E-07 50.6 3.0 23 179-201 50-72 (263)
241 2pze_A Cystic fibrosis transme 94.5 0.019 6.6E-07 49.3 3.0 24 179-202 34-57 (229)
242 4g1u_C Hemin import ATP-bindin 94.5 0.019 6.5E-07 50.6 3.0 23 179-201 37-59 (266)
243 2zu0_C Probable ATP-dependent 94.5 0.021 7.1E-07 50.3 3.2 23 179-201 46-68 (267)
244 2ff7_A Alpha-hemolysin translo 94.4 0.02 6.7E-07 49.9 3.0 22 180-201 36-57 (247)
245 1sgw_A Putative ABC transporte 94.4 0.017 5.7E-07 49.2 2.4 22 180-201 36-57 (214)
246 1vpl_A ABC transporter, ATP-bi 94.4 0.021 7E-07 50.1 3.0 23 179-201 41-63 (256)
247 2ixe_A Antigen peptide transpo 94.4 0.021 7.1E-07 50.5 3.0 23 179-201 45-67 (271)
248 2r9v_A ATP synthase subunit al 94.4 0.1 3.5E-06 50.0 7.8 98 181-282 177-288 (515)
249 2ghi_A Transport protein; mult 94.3 0.021 7.2E-07 50.1 3.0 23 179-201 46-68 (260)
250 1oix_A RAS-related protein RAB 94.3 0.024 8.1E-07 46.9 3.1 24 179-202 29-52 (191)
251 2wji_A Ferrous iron transport 94.3 0.036 1.2E-06 44.4 4.1 23 180-202 4-26 (165)
252 2yz2_A Putative ABC transporte 94.3 0.022 7.5E-07 50.1 3.0 23 179-201 33-55 (266)
253 2qi9_C Vitamin B12 import ATP- 94.3 0.022 7.6E-07 49.6 3.0 22 180-201 27-48 (249)
254 1q3t_A Cytidylate kinase; nucl 94.3 0.026 9E-07 48.4 3.4 25 177-201 14-38 (236)
255 1svm_A Large T antigen; AAA+ f 94.3 0.039 1.3E-06 51.1 4.7 35 167-201 157-191 (377)
256 2dyk_A GTP-binding protein; GT 94.3 0.031 1.1E-06 44.1 3.6 23 180-202 2-24 (161)
257 2nq2_C Hypothetical ABC transp 94.3 0.023 7.9E-07 49.6 3.0 22 180-201 32-53 (253)
258 3d3q_A TRNA delta(2)-isopenten 94.2 0.025 8.7E-07 51.5 3.3 22 180-201 8-29 (340)
259 1ak2_A Adenylate kinase isoenz 94.2 0.027 9.3E-07 48.2 3.4 24 179-202 16-39 (233)
260 2e87_A Hypothetical protein PH 94.2 0.13 4.4E-06 47.1 8.2 25 178-202 166-190 (357)
261 1e4v_A Adenylate kinase; trans 94.2 0.025 8.5E-07 47.7 3.1 21 181-201 2-22 (214)
262 2ihy_A ABC transporter, ATP-bi 94.2 0.023 7.9E-07 50.4 3.0 23 179-201 47-69 (279)
263 2xb4_A Adenylate kinase; ATP-b 94.2 0.025 8.6E-07 48.1 3.1 21 181-201 2-22 (223)
264 1fzq_A ADP-ribosylation factor 94.2 0.035 1.2E-06 45.3 3.8 26 177-202 14-39 (181)
265 1yrb_A ATP(GTP)binding protein 94.2 0.03 1E-06 48.6 3.6 24 178-201 13-36 (262)
266 3r20_A Cytidylate kinase; stru 94.2 0.026 8.8E-07 48.7 3.1 23 179-201 9-31 (233)
267 3oaa_A ATP synthase subunit al 94.2 0.15 5E-06 48.8 8.5 108 168-281 152-274 (513)
268 1r6b_X CLPA protein; AAA+, N-t 94.1 0.056 1.9E-06 54.8 6.0 48 155-202 457-511 (758)
269 2eyu_A Twitching motility prot 94.1 0.028 9.7E-07 49.3 3.3 115 178-306 24-139 (261)
270 3sop_A Neuronal-specific septi 94.1 0.027 9.2E-07 49.7 3.1 21 181-201 4-24 (270)
271 1ltq_A Polynucleotide kinase; 94.1 0.028 9.6E-07 50.0 3.3 22 180-201 3-24 (301)
272 4eaq_A DTMP kinase, thymidylat 94.1 0.038 1.3E-06 47.4 4.0 25 178-202 25-49 (229)
273 2zej_A Dardarin, leucine-rich 94.1 0.025 8.6E-07 46.2 2.7 22 181-202 4-25 (184)
274 2f9l_A RAB11B, member RAS onco 94.1 0.026 9E-07 46.8 2.9 24 179-202 5-28 (199)
275 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.028 9.6E-07 47.5 3.1 115 179-300 23-168 (235)
276 2vp4_A Deoxynucleoside kinase; 94.0 0.025 8.6E-07 48.4 2.8 26 177-202 18-43 (230)
277 3sr0_A Adenylate kinase; phosp 94.0 0.029 1E-06 47.4 3.1 76 181-272 2-84 (206)
278 2f7s_A C25KG, RAS-related prot 94.0 0.32 1.1E-05 40.5 9.7 24 179-202 25-48 (217)
279 1tue_A Replication protein E1; 94.0 0.05 1.7E-06 45.9 4.5 37 165-202 45-81 (212)
280 2v9p_A Replication protein E1; 94.0 0.03 1E-06 50.3 3.2 24 178-201 125-148 (305)
281 3a8t_A Adenylate isopentenyltr 94.0 0.036 1.2E-06 50.4 3.8 23 179-201 40-62 (339)
282 1nij_A Hypothetical protein YJ 94.0 0.028 9.6E-07 50.8 3.0 25 178-202 3-27 (318)
283 1j8m_F SRP54, signal recogniti 93.9 0.048 1.7E-06 48.8 4.5 23 179-201 98-120 (297)
284 1fx0_A ATP synthase alpha chai 93.9 0.081 2.8E-06 50.6 6.2 93 181-281 165-275 (507)
285 2ce2_X GTPase HRAS; signaling 93.9 0.034 1.2E-06 43.8 3.1 22 181-202 5-26 (166)
286 3hjn_A DTMP kinase, thymidylat 93.9 0.072 2.5E-06 44.5 5.3 87 181-272 2-91 (197)
287 2qm8_A GTPase/ATPase; G protei 93.9 0.06 2.1E-06 49.0 5.1 33 168-200 44-76 (337)
288 2wjg_A FEOB, ferrous iron tran 93.9 0.04 1.4E-06 44.9 3.5 24 179-202 7-30 (188)
289 2v3c_C SRP54, signal recogniti 93.8 0.035 1.2E-06 52.4 3.6 24 178-201 98-121 (432)
290 2pjz_A Hypothetical protein ST 93.8 0.031 1.1E-06 49.1 3.0 22 180-201 31-52 (263)
291 3gqb_B V-type ATP synthase bet 93.8 0.056 1.9E-06 51.1 4.9 91 181-272 149-261 (464)
292 3crm_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 50.3 3.3 22 180-201 6-27 (323)
293 1tq4_A IIGP1, interferon-induc 93.8 0.034 1.2E-06 52.2 3.3 24 178-201 68-91 (413)
294 3k1j_A LON protease, ATP-depen 93.7 0.05 1.7E-06 53.7 4.6 43 156-202 41-83 (604)
295 3nh6_A ATP-binding cassette SU 93.7 0.026 9E-07 50.7 2.4 23 179-201 80-102 (306)
296 1a7j_A Phosphoribulokinase; tr 93.7 0.021 7.1E-07 51.0 1.6 24 178-201 4-27 (290)
297 3vr4_D V-type sodium ATPase su 93.7 0.071 2.4E-06 50.4 5.3 91 182-272 154-258 (465)
298 3bh0_A DNAB-like replicative h 93.7 0.16 5.4E-06 45.7 7.5 53 177-233 66-118 (315)
299 2p67_A LAO/AO transport system 93.7 0.064 2.2E-06 48.9 4.9 34 168-201 45-78 (341)
300 1z2a_A RAS-related protein RAB 93.7 0.036 1.2E-06 44.0 2.9 24 179-202 5-28 (168)
301 3zvl_A Bifunctional polynucleo 93.6 0.037 1.3E-06 52.0 3.3 26 177-202 256-281 (416)
302 2nzj_A GTP-binding protein REM 93.6 0.038 1.3E-06 44.2 3.0 24 179-202 4-27 (175)
303 3end_A Light-independent proto 93.6 0.041 1.4E-06 49.1 3.5 25 177-201 39-63 (307)
304 2j37_W Signal recognition part 93.6 0.066 2.2E-06 51.5 5.0 24 178-201 100-123 (504)
305 2lkc_A Translation initiation 93.6 0.062 2.1E-06 43.1 4.2 25 178-202 7-31 (178)
306 1ls1_A Signal recognition part 93.6 0.044 1.5E-06 49.0 3.5 24 178-201 97-120 (295)
307 2bbs_A Cystic fibrosis transme 93.6 0.036 1.2E-06 49.4 2.9 23 179-201 64-86 (290)
308 1f6b_A SAR1; gtpases, N-termin 93.5 0.063 2.1E-06 44.5 4.3 34 168-202 15-48 (198)
309 1z08_A RAS-related protein RAB 93.5 0.052 1.8E-06 43.2 3.7 24 179-202 6-29 (170)
310 1u8z_A RAS-related protein RAL 93.5 0.042 1.5E-06 43.4 3.1 23 180-202 5-27 (168)
311 3exa_A TRNA delta(2)-isopenten 93.5 0.043 1.5E-06 49.4 3.3 23 179-201 3-25 (322)
312 1cr0_A DNA primase/helicase; R 93.5 0.04 1.4E-06 48.9 3.2 24 179-202 35-58 (296)
313 2ocp_A DGK, deoxyguanosine kin 93.5 0.048 1.6E-06 46.9 3.5 24 179-202 2-25 (241)
314 3t1o_A Gliding protein MGLA; G 93.5 0.039 1.3E-06 45.1 2.9 23 179-201 14-36 (198)
315 1nlf_A Regulatory protein REPA 93.5 0.042 1.4E-06 48.4 3.2 23 179-201 30-52 (279)
316 2ged_A SR-beta, signal recogni 93.4 0.053 1.8E-06 44.4 3.6 25 178-202 47-71 (193)
317 3con_A GTPase NRAS; structural 93.4 0.041 1.4E-06 44.9 2.9 23 180-202 22-44 (190)
318 3tui_C Methionine import ATP-b 93.4 0.042 1.5E-06 50.6 3.2 23 179-201 54-76 (366)
319 1c1y_A RAS-related protein RAP 93.4 0.057 1.9E-06 42.7 3.6 22 181-202 5-26 (167)
320 2erx_A GTP-binding protein DI- 93.4 0.044 1.5E-06 43.6 3.0 23 180-202 4-26 (172)
321 3pqc_A Probable GTP-binding pr 93.3 0.064 2.2E-06 43.7 4.0 25 178-202 22-46 (195)
322 1cp2_A CP2, nitrogenase iron p 93.3 0.047 1.6E-06 47.6 3.3 22 180-201 2-23 (269)
323 1svi_A GTP-binding protein YSX 93.3 0.06 2E-06 44.1 3.8 25 178-202 22-46 (195)
324 2afh_E Nitrogenase iron protei 93.3 0.05 1.7E-06 48.1 3.5 23 179-201 2-24 (289)
325 2gj8_A MNME, tRNA modification 93.3 0.046 1.6E-06 44.2 3.0 23 180-202 5-27 (172)
326 3kta_A Chromosome segregation 93.3 0.049 1.7E-06 44.4 3.2 22 180-201 27-48 (182)
327 1z0j_A RAB-22, RAS-related pro 93.3 0.049 1.7E-06 43.3 3.1 23 180-202 7-29 (170)
328 3fvq_A Fe(3+) IONS import ATP- 93.3 0.046 1.6E-06 50.3 3.2 23 179-201 30-52 (359)
329 1ek0_A Protein (GTP-binding pr 93.2 0.05 1.7E-06 43.1 3.1 22 181-202 5-26 (170)
330 3mfy_A V-type ATP synthase alp 93.2 0.28 9.6E-06 47.4 8.6 59 167-230 216-275 (588)
331 1ky3_A GTP-binding protein YPT 93.2 0.052 1.8E-06 43.7 3.1 25 178-202 7-31 (182)
332 3q72_A GTP-binding protein RAD 93.2 0.047 1.6E-06 43.3 2.8 21 181-201 4-24 (166)
333 1kao_A RAP2A; GTP-binding prot 93.2 0.048 1.7E-06 43.0 2.9 23 180-202 4-26 (167)
334 2www_A Methylmalonic aciduria 93.1 0.059 2E-06 49.4 3.7 25 177-201 72-96 (349)
335 1u0j_A DNA replication protein 93.1 0.1 3.4E-06 45.9 5.0 36 166-201 91-126 (267)
336 1nrj_B SR-beta, signal recogni 93.1 0.063 2.2E-06 44.9 3.6 26 177-202 10-35 (218)
337 3def_A T7I23.11 protein; chlor 93.1 0.11 3.9E-06 45.2 5.4 37 167-203 24-60 (262)
338 1z47_A CYSA, putative ABC-tran 93.1 0.05 1.7E-06 49.9 3.2 23 179-201 41-63 (355)
339 3q85_A GTP-binding protein REM 93.1 0.065 2.2E-06 42.6 3.5 22 180-201 3-24 (169)
340 1m7b_A RND3/RHOE small GTP-bin 93.1 0.052 1.8E-06 44.2 3.0 24 179-202 7-30 (184)
341 1lw7_A Transcriptional regulat 93.0 0.05 1.7E-06 50.0 3.2 23 179-201 170-192 (365)
342 1wms_A RAB-9, RAB9, RAS-relate 93.0 0.056 1.9E-06 43.3 3.1 24 179-202 7-30 (177)
343 3foz_A TRNA delta(2)-isopenten 93.0 0.057 2E-06 48.5 3.3 24 178-201 9-32 (316)
344 1g16_A RAS-related protein SEC 93.0 0.057 1.9E-06 42.9 3.1 23 180-202 4-26 (170)
345 3tw8_B RAS-related protein RAB 93.0 0.058 2E-06 43.3 3.1 25 178-202 8-32 (181)
346 4dsu_A GTPase KRAS, isoform 2B 93.0 0.071 2.4E-06 43.2 3.7 23 180-202 5-27 (189)
347 2qnr_A Septin-2, protein NEDD5 92.9 0.048 1.6E-06 48.8 2.8 22 179-201 19-40 (301)
348 2fn4_A P23, RAS-related protei 92.9 0.11 3.6E-06 41.7 4.7 25 178-202 8-32 (181)
349 1r2q_A RAS-related protein RAB 92.9 0.059 2E-06 42.7 3.1 23 180-202 7-29 (170)
350 1r8s_A ADP-ribosylation factor 92.9 0.055 1.9E-06 42.8 2.9 21 182-202 3-23 (164)
351 1h65_A Chloroplast outer envel 92.9 0.12 4.2E-06 45.2 5.4 35 168-202 28-62 (270)
352 3kkq_A RAS-related protein M-R 92.9 0.072 2.5E-06 43.1 3.6 25 178-202 17-41 (183)
353 4edh_A DTMP kinase, thymidylat 92.9 0.1 3.4E-06 44.3 4.6 52 179-232 6-57 (213)
354 2ck3_A ATP synthase subunit al 92.9 0.12 4.1E-06 49.5 5.6 114 167-281 151-282 (510)
355 2cxx_A Probable GTP-binding pr 92.9 0.056 1.9E-06 43.9 3.0 22 181-202 3-24 (190)
356 1z0f_A RAB14, member RAS oncog 92.9 0.059 2E-06 43.2 3.1 24 179-202 15-38 (179)
357 1p5z_B DCK, deoxycytidine kina 92.9 0.04 1.4E-06 48.1 2.1 24 178-201 23-46 (263)
358 3t5g_A GTP-binding protein RHE 92.9 0.074 2.5E-06 42.9 3.7 24 179-202 6-29 (181)
359 3ihw_A Centg3; RAS, centaurin, 92.9 0.06 2E-06 44.0 3.1 24 179-202 20-43 (184)
360 2yyz_A Sugar ABC transporter, 92.9 0.056 1.9E-06 49.7 3.2 23 179-201 29-51 (359)
361 2hxs_A RAB-26, RAS-related pro 92.9 0.062 2.1E-06 43.1 3.1 24 179-202 6-29 (178)
362 2it1_A 362AA long hypothetical 92.9 0.057 1.9E-06 49.7 3.2 23 179-201 29-51 (362)
363 3cmu_A Protein RECA, recombina 92.8 0.12 4E-06 57.4 6.1 86 177-271 1425-1514(2050)
364 3rlf_A Maltose/maltodextrin im 92.8 0.058 2E-06 50.0 3.2 23 179-201 29-51 (381)
365 3ch4_B Pmkase, phosphomevalona 92.8 0.083 2.8E-06 44.4 3.8 25 177-201 9-33 (202)
366 2bme_A RAB4A, RAS-related prot 92.8 0.063 2.2E-06 43.5 3.1 24 179-202 10-33 (186)
367 1g29_1 MALK, maltose transport 92.8 0.059 2E-06 49.8 3.2 22 180-201 30-51 (372)
368 1upt_A ARL1, ADP-ribosylation 92.8 0.065 2.2E-06 42.6 3.1 24 179-202 7-30 (171)
369 3c5c_A RAS-like protein 12; GD 92.7 0.065 2.2E-06 43.9 3.1 24 179-202 21-44 (187)
370 1pui_A ENGB, probable GTP-bind 92.7 0.039 1.3E-06 45.9 1.8 25 178-202 25-49 (210)
371 1v43_A Sugar-binding transport 92.7 0.061 2.1E-06 49.7 3.2 23 179-201 37-59 (372)
372 2iwr_A Centaurin gamma 1; ANK 92.7 0.055 1.9E-06 43.5 2.6 24 179-202 7-30 (178)
373 1m2o_B GTP-binding protein SAR 92.7 0.064 2.2E-06 44.1 3.1 23 180-202 24-46 (190)
374 3llu_A RAS-related GTP-binding 92.7 0.061 2.1E-06 44.3 2.9 24 179-202 20-43 (196)
375 2y8e_A RAB-protein 6, GH09086P 92.7 0.066 2.3E-06 42.9 3.1 23 180-202 15-37 (179)
376 3d31_A Sulfate/molybdate ABC t 92.6 0.051 1.7E-06 49.8 2.6 22 180-201 27-48 (348)
377 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.069 2.4E-06 43.1 3.1 23 180-202 6-28 (186)
378 2a9k_A RAS-related protein RAL 92.6 0.069 2.3E-06 43.1 3.1 24 179-202 18-41 (187)
379 1vg8_A RAS-related protein RAB 92.6 0.083 2.8E-06 43.6 3.7 25 178-202 7-31 (207)
380 2oil_A CATX-8, RAS-related pro 92.6 0.068 2.3E-06 43.7 3.1 24 179-202 25-48 (193)
381 2bov_A RAla, RAS-related prote 92.6 0.068 2.3E-06 44.1 3.1 25 178-202 13-37 (206)
382 4dkx_A RAS-related protein RAB 92.6 0.21 7.1E-06 42.3 6.2 22 181-202 15-36 (216)
383 2efe_B Small GTP-binding prote 92.5 0.071 2.4E-06 42.9 3.1 24 179-202 12-35 (181)
384 3bwd_D RAC-like GTP-binding pr 92.5 0.071 2.4E-06 42.9 3.1 23 180-202 9-31 (182)
385 2dr3_A UPF0273 protein PH0284; 92.5 0.068 2.3E-06 45.6 3.1 48 179-230 23-70 (247)
386 3bc1_A RAS-related protein RAB 92.5 0.066 2.3E-06 43.5 2.9 24 179-202 11-34 (195)
387 1q57_A DNA primase/helicase; d 92.5 0.53 1.8E-05 45.1 9.7 56 177-235 240-295 (503)
388 3cbq_A GTP-binding protein REM 92.4 0.054 1.9E-06 44.8 2.3 23 178-200 22-44 (195)
389 1oxx_K GLCV, glucose, ABC tran 92.4 0.046 1.6E-06 50.2 2.0 23 179-201 31-53 (353)
390 3tkl_A RAS-related protein RAB 92.4 0.09 3.1E-06 42.9 3.6 25 178-202 15-39 (196)
391 2h92_A Cytidylate kinase; ross 92.4 0.059 2E-06 45.4 2.5 22 180-201 4-25 (219)
392 3eph_A TRNA isopentenyltransfe 92.4 0.08 2.7E-06 49.3 3.6 23 179-201 2-24 (409)
393 2g6b_A RAS-related protein RAB 92.4 0.075 2.6E-06 42.7 3.1 24 179-202 10-33 (180)
394 2obl_A ESCN; ATPase, hydrolase 92.3 0.071 2.4E-06 48.8 3.1 23 180-202 72-94 (347)
395 2fg5_A RAB-22B, RAS-related pr 92.3 0.076 2.6E-06 43.5 3.1 24 179-202 23-46 (192)
396 2gza_A Type IV secretion syste 92.3 0.059 2E-06 49.6 2.6 23 180-202 176-198 (361)
397 1ega_A Protein (GTP-binding pr 92.3 0.083 2.8E-06 47.2 3.5 25 178-202 7-31 (301)
398 1zbd_A Rabphilin-3A; G protein 92.3 0.08 2.7E-06 43.7 3.2 24 179-202 8-31 (203)
399 2atv_A RERG, RAS-like estrogen 92.3 0.075 2.6E-06 43.7 3.0 24 179-202 28-51 (196)
400 4bas_A ADP-ribosylation factor 92.3 0.087 3E-06 43.1 3.4 26 177-202 15-40 (199)
401 3clv_A RAB5 protein, putative; 92.2 0.074 2.5E-06 43.5 2.9 24 179-202 7-30 (208)
402 3oes_A GTPase rhebl1; small GT 92.2 0.074 2.5E-06 44.0 2.9 24 179-202 24-47 (201)
403 3k53_A Ferrous iron transport 92.2 0.095 3.3E-06 45.9 3.7 24 179-202 3-26 (271)
404 2c61_A A-type ATP synthase non 92.2 0.13 4.3E-06 48.9 4.7 91 181-271 154-258 (469)
405 3gmt_A Adenylate kinase; ssgci 92.2 0.075 2.6E-06 45.6 2.9 23 179-201 8-30 (230)
406 2qu8_A Putative nucleolar GTP- 92.2 0.099 3.4E-06 44.3 3.7 25 178-202 28-52 (228)
407 1ksh_A ARF-like protein 2; sma 92.2 0.08 2.7E-06 43.0 3.0 26 178-203 17-42 (186)
408 1zj6_A ADP-ribosylation factor 92.2 0.19 6.6E-06 40.7 5.3 24 179-202 16-39 (187)
409 3iev_A GTP-binding protein ERA 92.2 0.091 3.1E-06 47.1 3.5 26 177-202 8-33 (308)
410 3fdi_A Uncharacterized protein 92.1 0.084 2.9E-06 44.2 3.1 22 180-201 7-28 (201)
411 3reg_A RHO-like small GTPase; 92.1 0.084 2.9E-06 43.3 3.1 24 179-202 23-46 (194)
412 2fh5_B SR-beta, signal recogni 92.1 0.1 3.4E-06 43.5 3.6 24 179-202 7-30 (214)
413 1gwn_A RHO-related GTP-binding 92.1 0.08 2.7E-06 44.2 3.0 24 179-202 28-51 (205)
414 3gd7_A Fusion complex of cysti 92.1 0.08 2.7E-06 49.2 3.2 23 179-201 47-69 (390)
415 2gf9_A RAS-related protein RAB 92.1 0.086 2.9E-06 43.0 3.1 24 179-202 22-45 (189)
416 2gf0_A GTP-binding protein DI- 92.1 0.079 2.7E-06 43.4 2.9 24 179-202 8-31 (199)
417 3cf2_A TER ATPase, transitiona 92.1 0.14 5E-06 51.9 5.3 55 153-209 474-539 (806)
418 3dz8_A RAS-related protein RAB 92.1 0.079 2.7E-06 43.4 2.9 24 179-202 23-46 (191)
419 1zd9_A ADP-ribosylation factor 92.1 0.087 3E-06 43.0 3.1 24 179-202 22-45 (188)
420 3thx_B DNA mismatch repair pro 92.1 0.058 2E-06 55.7 2.4 23 178-200 672-694 (918)
421 1p9r_A General secretion pathw 92.0 0.16 5.4E-06 47.7 5.2 24 178-201 166-189 (418)
422 3lv8_A DTMP kinase, thymidylat 92.0 0.13 4.5E-06 44.3 4.3 52 179-231 27-78 (236)
423 2qag_B Septin-6, protein NEDD5 92.0 0.072 2.5E-06 50.1 2.8 21 182-202 45-65 (427)
424 2cjw_A GTP-binding protein GEM 92.0 0.085 2.9E-06 43.5 2.9 23 179-201 6-28 (192)
425 2a5j_A RAS-related protein RAB 92.0 0.089 3.1E-06 43.0 3.1 24 179-202 21-44 (191)
426 2q3h_A RAS homolog gene family 92.0 0.085 2.9E-06 43.4 3.0 24 179-202 20-43 (201)
427 2ew1_A RAS-related protein RAB 92.0 0.082 2.8E-06 44.0 2.9 24 179-202 26-49 (201)
428 1z06_A RAS-related protein RAB 92.0 0.092 3.2E-06 42.8 3.1 24 179-202 20-43 (189)
429 3cr8_A Sulfate adenylyltranfer 91.9 0.071 2.4E-06 52.0 2.7 23 179-201 369-391 (552)
430 1x3s_A RAS-related protein RAB 91.9 0.092 3.2E-06 42.8 3.1 24 179-202 15-38 (195)
431 2x77_A ADP-ribosylation factor 91.9 0.14 4.7E-06 41.7 4.1 35 168-202 10-45 (189)
432 2bcg_Y Protein YP2, GTP-bindin 91.9 0.091 3.1E-06 43.5 3.1 24 179-202 8-31 (206)
433 2p5s_A RAS and EF-hand domain 91.9 0.092 3.2E-06 43.3 3.1 25 178-202 27-51 (199)
434 2o52_A RAS-related protein RAB 91.9 0.088 3E-06 43.6 2.9 24 179-202 25-48 (200)
435 2axn_A 6-phosphofructo-2-kinas 91.9 0.1 3.4E-06 50.5 3.7 23 179-201 35-57 (520)
436 1moz_A ARL1, ADP-ribosylation 91.8 0.067 2.3E-06 43.2 2.1 24 178-201 17-40 (183)
437 2h17_A ADP-ribosylation factor 91.8 0.097 3.3E-06 42.4 3.1 24 179-202 21-44 (181)
438 2b6h_A ADP-ribosylation factor 91.8 0.086 2.9E-06 43.4 2.8 24 179-202 29-52 (192)
439 4dzz_A Plasmid partitioning pr 91.8 0.092 3.2E-06 43.5 3.0 23 179-201 1-24 (206)
440 2yv5_A YJEQ protein; hydrolase 91.8 0.092 3.2E-06 47.0 3.1 31 165-200 156-186 (302)
441 3lxx_A GTPase IMAP family memb 91.8 0.11 3.8E-06 44.4 3.6 25 178-202 28-52 (239)
442 2fv8_A H6, RHO-related GTP-bin 91.7 0.099 3.4E-06 43.5 3.1 23 180-202 26-48 (207)
443 2j1l_A RHO-related GTP-binding 91.7 0.093 3.2E-06 44.0 2.9 24 179-202 34-57 (214)
444 3upu_A ATP-dependent DNA helic 91.7 0.14 4.6E-06 48.7 4.4 36 164-202 33-68 (459)
445 2qmh_A HPR kinase/phosphorylas 91.7 0.1 3.5E-06 43.7 3.1 23 179-201 34-56 (205)
446 1g8f_A Sulfate adenylyltransfe 91.7 0.12 4E-06 49.9 3.8 45 158-202 374-418 (511)
447 3v9p_A DTMP kinase, thymidylat 91.7 0.097 3.3E-06 44.8 3.0 24 179-202 25-48 (227)
448 2rcn_A Probable GTPase ENGC; Y 91.6 0.099 3.4E-06 48.0 3.2 23 180-202 216-238 (358)
449 4gzl_A RAS-related C3 botulinu 91.6 0.12 4.1E-06 42.9 3.5 24 179-202 30-53 (204)
450 2il1_A RAB12; G-protein, GDP, 91.6 0.087 3E-06 43.2 2.6 23 180-202 27-49 (192)
451 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.078 2.7E-06 50.5 2.5 23 179-201 138-160 (460)
452 2atx_A Small GTP binding prote 91.5 0.1 3.5E-06 42.6 3.0 24 179-202 18-41 (194)
453 3cph_A RAS-related protein SEC 91.5 0.11 3.7E-06 43.1 3.1 24 179-202 20-43 (213)
454 2hup_A RAS-related protein RAB 91.4 0.11 3.8E-06 43.0 3.1 24 179-202 29-52 (201)
455 2gco_A H9, RHO-related GTP-bin 91.4 0.11 3.8E-06 42.9 3.1 23 180-202 26-48 (201)
456 2j0v_A RAC-like GTP-binding pr 91.4 0.11 3.8E-06 43.2 3.1 24 179-202 9-32 (212)
457 4tmk_A Protein (thymidylate ki 91.3 0.15 5.2E-06 43.1 3.9 52 180-232 4-55 (213)
458 3vr4_A V-type sodium ATPase ca 91.3 0.27 9.3E-06 47.7 6.0 58 167-229 221-279 (600)
459 1jwy_B Dynamin A GTPase domain 91.3 0.099 3.4E-06 46.6 2.8 26 177-202 22-47 (315)
460 4dhe_A Probable GTP-binding pr 91.3 0.089 3E-06 44.1 2.4 26 178-203 28-53 (223)
461 1yqt_A RNAse L inhibitor; ATP- 91.3 0.11 3.6E-06 50.6 3.2 127 180-307 313-469 (538)
462 3ozx_A RNAse L inhibitor; ATP 91.2 0.1 3.4E-06 50.7 3.0 22 180-201 295-316 (538)
463 1jr3_D DNA polymerase III, del 91.2 1.3 4.4E-05 39.9 10.3 103 168-298 9-115 (343)
464 2g3y_A GTP-binding protein GEM 91.2 0.11 3.9E-06 43.7 3.0 23 179-201 37-59 (211)
465 2qag_C Septin-7; cell cycle, c 91.2 0.099 3.4E-06 49.1 2.8 21 182-202 34-54 (418)
466 3f9v_A Minichromosome maintena 91.1 0.064 2.2E-06 52.8 1.5 45 157-201 296-349 (595)
467 2h57_A ADP-ribosylation factor 91.1 0.086 3E-06 43.0 2.1 25 179-203 21-45 (190)
468 1yqt_A RNAse L inhibitor; ATP- 91.1 0.11 3.9E-06 50.4 3.2 23 179-201 47-69 (538)
469 3ozx_A RNAse L inhibitor; ATP 91.1 0.11 3.9E-06 50.3 3.2 24 178-201 24-47 (538)
470 1bif_A 6-phosphofructo-2-kinas 91.1 0.13 4.5E-06 49.0 3.5 23 179-201 39-61 (469)
471 4hlc_A DTMP kinase, thymidylat 91.1 0.28 9.5E-06 41.2 5.2 50 180-232 3-52 (205)
472 2aka_B Dynamin-1; fusion prote 91.1 0.27 9.2E-06 43.3 5.4 27 177-203 24-50 (299)
473 3q3j_B RHO-related GTP-binding 91.0 0.16 5.4E-06 42.6 3.7 24 179-202 27-50 (214)
474 2dpy_A FLII, flagellum-specifi 91.0 0.12 4E-06 48.9 3.1 24 179-202 157-180 (438)
475 3ld9_A DTMP kinase, thymidylat 91.0 0.16 5.5E-06 43.4 3.7 56 178-233 20-75 (223)
476 2xtp_A GTPase IMAP family memb 91.0 0.15 5.2E-06 44.1 3.6 25 178-202 21-45 (260)
477 2fu5_C RAS-related protein RAB 91.0 0.07 2.4E-06 43.1 1.4 24 179-202 8-31 (183)
478 1ypw_A Transitional endoplasmi 91.0 0.066 2.3E-06 54.7 1.5 50 153-202 474-534 (806)
479 2qtf_A Protein HFLX, GTP-bindi 90.9 0.13 4.3E-06 47.4 3.2 25 178-202 178-202 (364)
480 3euj_A Chromosome partition pr 90.9 0.12 4.2E-06 49.3 3.2 22 180-201 30-51 (483)
481 1u0l_A Probable GTPase ENGC; p 90.9 0.12 4.2E-06 46.1 3.0 33 165-202 160-192 (301)
482 2r8r_A Sensor protein; KDPD, P 90.9 0.13 4.5E-06 44.0 3.0 107 181-300 8-127 (228)
483 1f2t_A RAD50 ABC-ATPase; DNA d 90.9 0.16 5.5E-06 40.3 3.4 22 179-200 23-44 (149)
484 1mky_A Probable GTP-binding pr 90.9 0.24 8.4E-06 46.6 5.2 43 160-202 152-203 (439)
485 2orw_A Thymidine kinase; TMTK, 90.9 0.14 4.6E-06 42.3 3.0 21 180-200 4-24 (184)
486 3bk7_A ABC transporter ATP-bin 90.8 0.13 4.3E-06 50.8 3.2 125 180-307 383-539 (607)
487 3ea0_A ATPase, para family; al 90.8 0.16 5.3E-06 43.4 3.5 24 178-201 3-27 (245)
488 3iby_A Ferrous iron transport 90.7 0.14 4.7E-06 44.6 3.1 23 180-202 2-24 (256)
489 1t9h_A YLOQ, probable GTPase E 90.7 0.072 2.5E-06 47.9 1.2 22 180-201 174-195 (307)
490 3j16_B RLI1P; ribosome recycli 90.6 0.13 4.5E-06 50.7 3.2 125 180-307 379-535 (608)
491 1wf3_A GTP-binding protein; GT 90.6 0.17 5.7E-06 45.3 3.6 25 178-202 6-30 (301)
492 3t5d_A Septin-7; GTP-binding p 90.5 0.12 4.1E-06 45.3 2.6 23 180-202 9-31 (274)
493 3kjh_A CO dehydrogenase/acetyl 90.5 0.12 4E-06 44.2 2.4 21 181-201 2-22 (254)
494 1m8p_A Sulfate adenylyltransfe 90.4 0.16 5.6E-06 49.6 3.7 24 178-201 395-418 (573)
495 3j16_B RLI1P; ribosome recycli 90.4 0.14 4.8E-06 50.5 3.2 23 179-201 103-125 (608)
496 4a1f_A DNAB helicase, replicat 90.4 0.33 1.1E-05 44.1 5.5 53 178-234 45-97 (338)
497 1dek_A Deoxynucleoside monopho 90.4 0.17 5.8E-06 43.7 3.3 22 180-201 2-23 (241)
498 4akg_A Glutathione S-transfera 90.4 0.39 1.3E-05 55.0 7.0 98 180-287 924-1029(2695)
499 3k9g_A PF-32 protein; ssgcid, 90.4 0.16 5.4E-06 44.2 3.2 26 177-202 25-51 (267)
500 3b1v_A Ferrous iron uptake tra 90.3 0.22 7.6E-06 43.8 4.1 24 179-202 3-26 (272)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=5.1e-28 Score=238.87 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=137.8
Q ss_pred eechhhHHHHHHHHhcC-CCCceEEEEEccCCccHHHHHHHHHc--cCCCCCceeeEEEEEcCCCC--CHHHHHHHHHHH
Q 038944 159 VGLDDRMEELLDLLIEG-PPQLSVVVILDSIGLDKAAFAGEAYN--SSYVKHYFDCHAWVPGTYPY--DADQMLDIVIKF 233 (334)
Q Consensus 159 vGr~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~il~~il~~ 233 (334)
|||+.++++|.++|..+ +...++|+|+||||+||||||+.+|+ +.+++.+|++++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999865 45689999999999999999999998 67899999999999999985 899999999999
Q ss_pred hCCCCC--cc---ccchhhHHHHHHHHHHHcCCC-eEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhhcc
Q 038944 234 LMPSSR--LS---EIMDKNYEMKKIILHEYLMTK-RYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTFLL 307 (334)
Q Consensus 234 ~~~~~~--~~---~~~~~~~~~l~~~l~~~L~~k-r~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~~~ 307 (334)
++.... .. +..+.. .+...+++.|++| ||||||||||+.+.+ .+.. .+||+||||||+..||..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~--~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSV--VLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHH--HHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHH--HHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 987532 10 122334 7889999999996 999999999998755 2211 16999999999999999887
Q ss_pred c-cCcccccccCC---------------CChhHHHHHHHhcc
Q 038944 308 E-TLFSLLICVSR---------------TPRDIQQAVISVVD 333 (334)
Q Consensus 308 ~-~~~~~l~~l~~---------------~~~~l~~i~~~Iv~ 333 (334)
. ...+.|.+|+. .++++.+++++|++
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~ 324 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIE 324 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Confidence 3 35688888872 33789999999885
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=1.2e-22 Score=207.57 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=119.3
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceee-EEEEEcCCCCCHHHHHHHHHHHhC
Q 038944 157 DTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDC-HAWVPGTYPYDADQMLDIVIKFLM 235 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~il~~il~~~~ 235 (334)
..|||+.++++|.++|...+ ..++++|+||||+||||||+.+|++.+++.+|++ ++||++++.++...++..|++.+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998643 3789999999999999999999998788899997 899999999999898888877532
Q ss_pred C---CCCcc-c---cchhhHHHHHHHHHHHc---CCCeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhh
Q 038944 236 P---SSRLS-E---IMDKNYEMKKIILHEYL---MTKRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTF 305 (334)
Q Consensus 236 ~---~~~~~-~---~~~~~~~~l~~~l~~~L---~~kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~ 305 (334)
. ..... + ......+.+...+++.| .+|||||||||||+.+.|+.+. .||+||||||+..++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 2 11000 0 01111226677777766 7899999999999998888752 68999999999999986
Q ss_pred ccccCccccc
Q 038944 306 LLETLFSLLI 315 (334)
Q Consensus 306 ~~~~~~~~l~ 315 (334)
+.....+.+.
T Consensus 281 l~g~~vy~Le 290 (1221)
T 1vt4_I 281 LSAATTTHIS 290 (1221)
T ss_dssp HHHHSSCEEE
T ss_pred cCCCeEEEec
Confidence 6655556666
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=7.5e-23 Score=218.53 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=122.4
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCC-CCCcee-eEEEEEcCCCCC--HHHHHH
Q 038944 153 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSY-VKHYFD-CHAWVPGTYPYD--ADQMLD 228 (334)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~-~~~~F~-~~~wv~vs~~~~--~~~il~ 228 (334)
..+..+|||++++++|.++|...+...++++|+||||+||||||+.+|++.+ ...+|. ...||++++.++ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 3456799999999999999987767789999999999999999999999643 245564 567999998654 445577
Q ss_pred HHHHHhCCCCCccccchhhHHHHHHHHHHHcCCC--eEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhh-
Q 038944 229 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK--RYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTF- 305 (334)
Q Consensus 229 ~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~- 305 (334)
.++..+..............+.+...++..|.++ ||||||||||+...|..+ .+||+||||||+..|+..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 7888887654321111122338899999999877 999999999998776653 468999999999999955
Q ss_pred ccccCcccccc-cC
Q 038944 306 LLETLFSLLIC-VS 318 (334)
Q Consensus 306 ~~~~~~~~l~~-l~ 318 (334)
++....+.+.. |+
T Consensus 274 ~~~~~~~~~~~~l~ 287 (1249)
T 3sfz_A 274 MGPKHVVPVESGLG 287 (1249)
T ss_dssp CSCBCCEECCSSCC
T ss_pred cCCceEEEecCCCC
Confidence 45556666664 65
No 4
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.79 E-value=2.4e-19 Score=139.78 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHhhhhhccccccchhHhhhHHhHHHhhhccccchHHHHHHHHHHhccc--ccCCchHHHHHHHHHHH
Q 038944 3 ISFRLFSERLRRVLAGEEVTLPDAAKLPIQNLHAETEIVTSWLSEFQDDISCLLLQKMGHR--EIKNPDLTTVMDEINCF 80 (334)
Q Consensus 3 ~~~~~~~~kl~~~l~~~e~~l~~~~~~~i~~L~~~l~~l~~~~~~~~~~~~~~~l~~a~~~--~~~~~~v~~Wl~~lr~~ 80 (334)
++++++++||++++ .+|+.++.|+++++++|+++|+ +|++||.+++.+ +..++.++.|+++||++
T Consensus 1 a~v~~ll~KL~~ll-~~E~~l~~gv~~~i~~Lk~eL~------------~m~a~L~da~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 1 AAISNLIPKLGELL-TEEFKLHKGVKKNIEDLGKELE------------SMNAALIKIGEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp CTTCSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH-HHHHHHHhchHHHHHHHHHHHH------------HHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 57889999999999 6899999999999999999999 999999999987 56899999999999999
Q ss_pred HHhHHHHHHHHHhhhhcc
Q 038944 81 TYESEKVIDTFINSISEQ 98 (334)
Q Consensus 81 ayd~ED~lD~~~~~~~~~ 98 (334)
|||+||+||+|.++....
T Consensus 68 aYD~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999988653
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=177.72 Aligned_cols=144 Identities=18% Similarity=0.195 Sum_probs=108.1
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCC-CCcee-eEEEEEcCCCCCHHHHHHHH-
Q 038944 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYV-KHYFD-CHAWVPGTYPYDADQMLDIV- 230 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~il~~i- 230 (334)
.+..+|||+.+++.|.++|.......++++|+||||+||||||..+|++..+ ..+|+ .++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 3556999999999999999865556899999999999999999999986544 67894 7999999876 344444444
Q ss_pred --HHHhCCCCC--ccccchhhHHHHHHHHHHHcCC--CeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHh
Q 038944 231 --IKFLMPSSR--LSEIMDKNYEMKKIILHEYLMT--KRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFT 304 (334)
Q Consensus 231 --l~~~~~~~~--~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~ 304 (334)
+..++.... .....+.. .+...+...+.+ +++||||||+|+...+.. + ..||+||||||+..++.
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIE--EAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHH--HHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGT
T ss_pred HHHHHhccccccccCCCCCHH--HHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHH
Confidence 445542111 00122333 777788888865 789999999999765542 3 45899999999999887
Q ss_pred hcc
Q 038944 305 FLL 307 (334)
Q Consensus 305 ~~~ 307 (334)
.+.
T Consensus 272 ~~~ 274 (591)
T 1z6t_A 272 SVM 274 (591)
T ss_dssp TCC
T ss_pred hcC
Confidence 654
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=1.3e-11 Score=116.58 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=96.7
Q ss_pred CCCCeeechhhHHHHHHHH-hc---C-CCCceEEEE--EccCCccHHHHHHHHHccCCCCCc-----ee-eEEEEEcCCC
Q 038944 154 KSRDTVGLDDRMEELLDLL-IE---G-PPQLSVVVI--LDSIGLDKAAFAGEAYNSSYVKHY-----FD-CHAWVPGTYP 220 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L-~~---~-~~~~~vi~I--vG~gGvGKTtLa~~v~~~~~~~~~-----F~-~~~wv~vs~~ 220 (334)
.+..++||+.+++.|.++| .. + ......+.| +|++|+|||||++.+++. .... |. ..+|+.....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCC
Confidence 3467999999999999998 42 2 023345555 999999999999999984 2221 22 3578887777
Q ss_pred CCHHHHHHHHHHHhCCCCCccccchhhHHHHHHHHHHHcC--CCeEEEEEeCCCCh--------hHHHHHHhhC---CCC
Q 038944 221 YDADQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLNVIDDVWNI--------EVCDIIREIL---PDN 287 (334)
Q Consensus 221 ~~~~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~--------~~w~~l~~~l---~~~ 287 (334)
.+...++..++.+++...+. ...+.. .+...+.+.+. +++++|||||+|.. +.+..+...+ +..
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQV-RGAPAL--DILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCC-TTCCHH--HHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCHHHHHHHHHHHhCCCCCC-CCCCHH--HHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 88999999999999765321 112223 55566666664 78999999999763 3344333332 211
Q ss_pred C--CCeEEEEecCChHHH
Q 038944 288 Q--NRSRVLITLTEIKMF 303 (334)
Q Consensus 288 ~--~gsrIivTTr~~~va 303 (334)
. ....||+||+..++.
T Consensus 175 ~~~~~v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRAL 192 (412)
T ss_dssp TSCCBEEEEEEEEETHHH
T ss_pred CCCceEEEEEEeccccHH
Confidence 2 344588888766644
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=7.4e-11 Score=110.35 Aligned_cols=143 Identities=12% Similarity=-0.023 Sum_probs=97.4
Q ss_pred CCCeeechhhHHHHHHHHhc--CCCCceEEEEEccCCccHHHHHHHHHccCCCCCc--------eeeEEEEEcCCCC-CH
Q 038944 155 SRDTVGLDDRMEELLDLLIE--GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHY--------FDCHAWVPGTYPY-DA 223 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~ 223 (334)
+..++||+.+++.+.++|.. .....+.+.|+|++|+||||||+.+++. .... ....+|++.+... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 47799999999999988865 2334568999999999999999999983 2111 2345777777666 88
Q ss_pred HHHHHHHHHHhCCCCCccccchhhHHHHHHHHHHHcCCCeEEEEEeCCCChhH--HHHH-HhhCCCCCCCeEEEEecCCh
Q 038944 224 DQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWNIEV--CDII-REILPDNQNRSRVLITLTEI 300 (334)
Q Consensus 224 ~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--w~~l-~~~l~~~~~gsrIivTTr~~ 300 (334)
..++..++.++.+........... .+...+.+.+..++.+|||||++.... +..+ ...+.....+..||+||+..
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLG--EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTH--HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 899999999884322110112223 667778888877777999999975421 1122 22222111678899998875
Q ss_pred H
Q 038944 301 K 301 (334)
Q Consensus 301 ~ 301 (334)
.
T Consensus 175 ~ 175 (384)
T 2qby_B 175 N 175 (384)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.08 E-value=1.1e-09 Score=102.47 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=102.8
Q ss_pred CCCCeeechhhHHHHHHHHhc----CCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHH
Q 038944 154 KSRDTVGLDDRMEELLDLLIE----GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDI 229 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~ 229 (334)
.+..++||+.+++.+..++.. ..+..+.+.|+|++|+|||||++.+.+...-... ...+|+..+...+...++..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHH
Confidence 346799999999999999875 2223458999999999999999999984221111 24567777788888999999
Q ss_pred HHHHhCCCCCccccchhhHHHHHHHHHHHc--CCCeEEEEEeCCCC--hhHHHHHHhhCCCCC----CCeEEEEecCChH
Q 038944 230 VIKFLMPSSRLSEIMDKNYEMKKIILHEYL--MTKRYLNVIDDVWN--IEVCDIIREILPDNQ----NRSRVLITLTEIK 301 (334)
Q Consensus 230 il~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~--~~~w~~l~~~l~~~~----~gsrIivTTr~~~ 301 (334)
++..++..... ...... .+...+...+ .+++.+|+||+++. ......+...+.... .+..||+||+...
T Consensus 94 l~~~l~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRD--EFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHTTCCCCS-SCCCHH--HHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHhCccCCC-CCCCHH--HHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 99998754321 112222 5555555555 36789999999965 456666666654311 4677888888775
Q ss_pred HHhhc
Q 038944 302 MFTFL 306 (334)
Q Consensus 302 va~~~ 306 (334)
....+
T Consensus 171 ~~~~l 175 (389)
T 1fnn_A 171 VLNNL 175 (389)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 54433
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=1.1e-10 Score=108.88 Aligned_cols=146 Identities=11% Similarity=0.104 Sum_probs=96.2
Q ss_pred CCCCCeeechhhHHHHHHHHhcC--CCCceEEEEEccCCccHHHHHHHHHccCCCCCce---eeEEEEEcCCCCCHHHHH
Q 038944 153 SKSRDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF---DCHAWVPGTYPYDADQML 227 (334)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~il 227 (334)
..+..++||+.+++.+.+++... ......+.|+|++|+|||||++.+++. ....| ...+|+..+...+...++
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 34567999999999999998752 344568899999999999999999983 32222 245677776666788888
Q ss_pred HHHHHHhCCCCCccccchhhHHHHHHHHHHHc--CCCeEEEEEeCCCCh------hHHHHHHhhCCC-CCCCeEEEEecC
Q 038944 228 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL--MTKRYLNVIDDVWNI------EVCDIIREILPD-NQNRSRVLITLT 298 (334)
Q Consensus 228 ~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~------~~w~~l~~~l~~-~~~gsrIivTTr 298 (334)
..++.+++..... ...+.. .+...+.+.+ .+++.+||||+++.. +.+..+...+.. ...+..+|+||+
T Consensus 95 ~~i~~~l~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 95 ADLLESLDVKVPF-TGLSIA--ELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHTTTTSCCCCS-SSCCHH--HHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHhCCCCCC-CCCCHH--HHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 8888887654321 111222 4555555555 356899999999652 344444433311 233566788888
Q ss_pred ChHHH
Q 038944 299 EIKMF 303 (334)
Q Consensus 299 ~~~va 303 (334)
.....
T Consensus 172 ~~~~~ 176 (386)
T 2qby_A 172 DVKFV 176 (386)
T ss_dssp CGGGG
T ss_pred CCChH
Confidence 76543
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.06 E-value=5.8e-10 Score=104.01 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=96.1
Q ss_pred CCCCeeechhhHHHHHHHHhcC--CCCceEEEEEccCCccHHHHHHHHHccCCCCCc------eeeEEEEEcCCCCCHHH
Q 038944 154 KSRDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHY------FDCHAWVPGTYPYDADQ 225 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 225 (334)
.+..++||+.+++.+..+|..- ......+.|+|++|+||||||+.+++. .... -...+|++.+...+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 3467999999999999998542 344568899999999999999999983 2111 12457788888889999
Q ss_pred HHHHHHHHhCCCCCccccchhhHHHHHHHHHHHc--CCCeEEEEEeCCCChh----HHHHHH---hhCCCC--CCCeEEE
Q 038944 226 MLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL--MTKRYLNVIDDVWNIE----VCDIIR---EILPDN--QNRSRVL 294 (334)
Q Consensus 226 il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~----~w~~l~---~~l~~~--~~gsrIi 294 (334)
++..++.+++..... ...... .+...+.+.+ .+++.+|+|||+.... ..+.+. ...... ..+..+|
T Consensus 95 ~~~~l~~~l~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 95 VASAIAEAVGVRVPF-TGLSVG--EVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHSCCCCS-SCCCHH--HHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHhCCCCCC-CCCCHH--HHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 999999999764332 122223 5566666666 4568999999997642 222222 222111 3456777
Q ss_pred EecCCh
Q 038944 295 ITLTEI 300 (334)
Q Consensus 295 vTTr~~ 300 (334)
.||+..
T Consensus 172 ~~t~~~ 177 (387)
T 2v1u_A 172 GITNSL 177 (387)
T ss_dssp EECSCS
T ss_pred EEECCC
Confidence 787765
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.01 E-value=6.3e-10 Score=102.32 Aligned_cols=137 Identities=9% Similarity=0.087 Sum_probs=89.6
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCC------CCHHHHH
Q 038944 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYP------YDADQML 227 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~------~~~~~il 227 (334)
.+..++||+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+.+... .+...++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER--P-----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS--S-----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc--C-----cEEEEeecccccccCCCHHHHH
Confidence 4567899999999999998763 689999999999999999999843 1 567766433 2566777
Q ss_pred HHHHHHhCCC--------------CCccccchhhHHHHHHHHHHHcCC-CeEEEEEeCCCChh---------HHHHHHhh
Q 038944 228 DIVIKFLMPS--------------SRLSEIMDKNYEMKKIILHEYLMT-KRYLNVIDDVWNIE---------VCDIIREI 283 (334)
Q Consensus 228 ~~il~~~~~~--------------~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~~~---------~w~~l~~~ 283 (334)
..+...+... ..........++.+...+.+.... ++++|||||++... .+..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 7777665430 000000011122566666665542 38999999997632 23434333
Q ss_pred CCCCCCCeEEEEecCChHH
Q 038944 284 LPDNQNRSRVLITLTEIKM 302 (334)
Q Consensus 284 l~~~~~gsrIivTTr~~~v 302 (334)
+.. ..+.++|+|++...+
T Consensus 159 ~~~-~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 159 YDS-LPNLKIILTGSEVGL 176 (350)
T ss_dssp HHH-CTTEEEEEEESSHHH
T ss_pred HHh-cCCeEEEEECCcHHH
Confidence 222 247889999988654
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=3e-09 Score=97.87 Aligned_cols=136 Identities=11% Similarity=0.069 Sum_probs=83.6
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCC-----CCHHHHHH
Q 038944 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYP-----YDADQMLD 228 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~il~ 228 (334)
.+..++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+..... .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHH
Confidence 45578999999999999 644 599999999999999999999842 22 2478876642 34455555
Q ss_pred HHHHHhC-------------CCC-----Ccc-cc------chhhHHHHHHHHHHHcCCCeEEEEEeCCCCh------hHH
Q 038944 229 IVIKFLM-------------PSS-----RLS-EI------MDKNYEMKKIILHEYLMTKRYLNVIDDVWNI------EVC 277 (334)
Q Consensus 229 ~il~~~~-------------~~~-----~~~-~~------~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~------~~w 277 (334)
.+.+.+. ... +.. .. ....++.+...+.+.-. ++++|||||++.. +.+
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 5544331 000 000 00 01112255556655433 4899999999642 223
Q ss_pred HHHHhhCCCCCCCeEEEEecCChHH
Q 038944 278 DIIREILPDNQNRSRVLITLTEIKM 302 (334)
Q Consensus 278 ~~l~~~l~~~~~gsrIivTTr~~~v 302 (334)
..+.... +...+.++|+|++....
T Consensus 159 ~~l~~~~-~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 159 PALAYAY-DNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHHHHH-HHCTTEEEEEEESSHHH
T ss_pred HHHHHHH-HcCCCeEEEEEcCchHH
Confidence 3333222 22246889999998764
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=1.3e-08 Score=86.93 Aligned_cols=118 Identities=11% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCcee-eEEEEEcCCCCCHHHHHHHHHHHh
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFD-CHAWVPGTYPYDADQMLDIVIKFL 234 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~il~~il~~~ 234 (334)
.+++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++... ...+. ....+..+...+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------- 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVV-------- 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHH--------
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHH--------
Confidence 468999999999999998754 22389999999999999999987311 11111 1233333333322221
Q ss_pred CCCCCccccchhhHHHHHHHHHHHc------CCCeEEEEEeCCCCh--hHHHHHHhhCCCCCCCeEEEEecCChH
Q 038944 235 MPSSRLSEIMDKNYEMKKIILHEYL------MTKRYLNVIDDVWNI--EVCDIIREILPDNQNRSRVLITLTEIK 301 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~L------~~kr~LlVlDdvw~~--~~w~~l~~~l~~~~~gsrIivTTr~~~ 301 (334)
...+.... .+++.+|+|||++.. ..++.+...+.....+.++|+||+...
T Consensus 86 -----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 86 -----------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp -----------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred -----------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 11222221 357899999999753 455666655544455788898887653
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.74 E-value=3.7e-08 Score=85.03 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=76.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhC
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLM 235 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~ 235 (334)
.+++|++..++.+..++..+. ....+.|+|++|+||||||+.+++.......+. ......... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT------ATPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC------SSCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCcccHH-HHHHhccCC
Confidence 458999999999999997653 234789999999999999999987422111110 000000000 011110000
Q ss_pred CCCCcc--ccchhhHHHHHHHHHHHc-----CCCeEEEEEeCCC--ChhHHHHHHhhCCCCCCCeEEEEecCChH
Q 038944 236 PSSRLS--EIMDKNYEMKKIILHEYL-----MTKRYLNVIDDVW--NIEVCDIIREILPDNQNRSRVLITLTEIK 301 (334)
Q Consensus 236 ~~~~~~--~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw--~~~~w~~l~~~l~~~~~gsrIivTTr~~~ 301 (334)
...... ...... .....+.+.+ .+++.+|||||++ +...++.+...+.....+..+|+||+...
T Consensus 95 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 95 VDLIEIDAASRTKV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEETTCGGGH--HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred cceEEecCcccccH--HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000 000111 1122233332 3567999999995 45677778777655556788888887653
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=8.6e-08 Score=87.02 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=73.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCcee-eEEEEEcCCCCCHHHHHHHHHHHh
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFD-CHAWVPGTYPYDADQMLDIVIKFL 234 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~il~~il~~~ 234 (334)
.+++|++..++.+.+++..+.. +.+.++|++|+||||+|+.+.+... ...+. ..+++..+...+... +++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~~--- 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQI--- 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTHH---
T ss_pred HHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHHH---
Confidence 5689999999999999987542 2388999999999999999987311 11111 233443333222111 11111
Q ss_pred CCCCCccccchhhHHHHHHHHHH---Hc-CCCeEEEEEeCCCC--hhHHHHHHhhCCCCCCCeEEEEecCCh
Q 038944 235 MPSSRLSEIMDKNYEMKKIILHE---YL-MTKRYLNVIDDVWN--IEVCDIIREILPDNQNRSRVLITLTEI 300 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~---~L-~~kr~LlVlDdvw~--~~~w~~l~~~l~~~~~gsrIivTTr~~ 300 (334)
..+.. .+ .+++.++|+||++. ...++.+...+.....++++|+||...
T Consensus 94 ------------------~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 94 ------------------KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp ------------------HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ------------------HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 11110 12 45689999999975 345555555554344568888888654
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.5e-07 Score=83.28 Aligned_cols=112 Identities=7% Similarity=0.029 Sum_probs=75.7
Q ss_pred eeechhhHHHHHHHHhc--CCCCceEEEEEccCCccHHHHHHHHHccCCC---CC---ceeeEEEEEcCCCCCHHHHHHH
Q 038944 158 TVGLDDRMEELLDLLIE--GPPQLSVVVILDSIGLDKAAFAGEAYNSSYV---KH---YFDCHAWVPGTYPYDADQMLDI 229 (334)
Q Consensus 158 ~vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~---~~---~F~~~~wv~vs~~~~~~~il~~ 229 (334)
+.||+++.+.|...|.. .....+.+.|+|++|+|||++++.|.+.... .. .| ..++++...-.+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 68999999999988875 2345678899999999999999999974211 11 23 3566776777788999999
Q ss_pred HHHHhCCCCCccccchhhHHHHHHHHHHH--cCCCeEEEEEeCCCC
Q 038944 230 VIKFLMPSSRLSEIMDKNYEMKKIILHEY--LMTKRYLNVIDDVWN 273 (334)
Q Consensus 230 il~~~~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdvw~ 273 (334)
|++++.+.... ...... .+...+... -.++.++++||++..
T Consensus 101 I~~~L~g~~~~-~~~~~~--~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 101 IWFAISKENLC-GDISLE--ALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHSCCC---CCCCHH--HHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHhcCCCCC-chHHHH--HHHHHHHHhhhccCCceEEEEecHHH
Confidence 99999765321 111111 333333332 246789999999865
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=3.5e-07 Score=83.15 Aligned_cols=121 Identities=10% Similarity=0.092 Sum_probs=73.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCcee-eEEEEEcCCCCCHHHHHHHHHHH
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFD-CHAWVPGTYPYDADQMLDIVIKF 233 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~il~~il~~ 233 (334)
-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++... ...+. ....+..+...+. ..++
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~----- 94 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIR----- 94 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTH-----
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHH-----
Confidence 4568999999999999998754 33489999999999999999987311 11111 1223332211000 0000
Q ss_pred hCCCCCccccchhhHHHHHHHHHHH--c-CCCeEEEEEeCCCC--hhHHHHHHhhCCCCCCCeEEEEecCCh
Q 038944 234 LMPSSRLSEIMDKNYEMKKIILHEY--L-MTKRYLNVIDDVWN--IEVCDIIREILPDNQNRSRVLITLTEI 300 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdvw~--~~~w~~l~~~l~~~~~gsrIivTTr~~ 300 (334)
.....+... + .+++.++++||++. ...++.+...+.....++++|+||...
T Consensus 95 ----------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 95 ----------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp ----------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ----------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 111111111 1 26788999999975 356666766654444578888888664
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=3.6e-07 Score=75.84 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=38.9
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-..++|+++.++.+.+++.... ...+.|+|++|+||||||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999997743 445789999999999999999873
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=2.1e-06 Score=76.69 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 154 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-.+++|.+..++.|.+.+... -....-+.|+|++|+|||+||+.+.+.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999998887431 123456899999999999999999983
No 20
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.06 E-value=2.9e-06 Score=70.47 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhcCC-CCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc
Q 038944 163 DRMEELLDLLIEGP-PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS 241 (334)
Q Consensus 163 ~~~~~l~~~L~~~~-~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~ 241 (334)
...+.+.+++..-. ..-..+.|+|++|+|||||++.+++.......+ ...++ +..+++..+.........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~-- 91 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD-- 91 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH--
Confidence 34444444444322 234689999999999999999998732101111 11223 345555555444332211
Q ss_pred ccchhhHHHHHHHHHHHcCCCeEEEEEeCCCC--hhHHH--HHHhhCCC-CCCCeEEEEecCCh
Q 038944 242 EIMDKNYEMKKIILHEYLMTKRYLNVIDDVWN--IEVCD--IIREILPD-NQNRSRVLITLTEI 300 (334)
Q Consensus 242 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~--~~~w~--~l~~~l~~-~~~gsrIivTTr~~ 300 (334)
. .+...+. +.-+|||||++. .+.|. .+...+.. ...|..+|+||...
T Consensus 92 -----~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 -----T--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -----S--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -----H--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 2222221 446899999983 23333 22222211 12466788887643
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.00 E-value=5.7e-06 Score=74.66 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=68.3
Q ss_pred CeeechhhHHHHHHHHhc-------------CCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCH
Q 038944 157 DTVGLDDRMEELLDLLIE-------------GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDA 223 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (334)
+++|.+..++.|.+++.. .......+.++|.+|+|||+||+.+.+............++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR---- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG----
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH----
Confidence 378998888888776542 123455789999999999999987765311111111111233321
Q ss_pred HHHHHHHHHHhCCCCCccccchhhHHHHHHHHHHHcCCCeEEEEEeCCC-----------ChhHHHHHHhhCCCCCCCeE
Q 038944 224 DQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLNVIDDVW-----------NIEVCDIIREILPDNQNRSR 292 (334)
Q Consensus 224 ~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw-----------~~~~w~~l~~~l~~~~~gsr 292 (334)
..+..... .. ... .+...+... +..+|+||++. +......+...+.....+..
T Consensus 108 --------~~l~~~~~--g~-~~~--~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 108 --------DDLVGQYI--GH-TAP--KTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp --------GGTCCSST--TC-HHH--HHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred --------HHhhhhcc--cc-cHH--HHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 01111111 00 111 222222222 23499999997 34455666666554455677
Q ss_pred EEEecCChH
Q 038944 293 VLITLTEIK 301 (334)
Q Consensus 293 IivTTr~~~ 301 (334)
||.||....
T Consensus 172 ~i~~~~~~~ 180 (309)
T 3syl_A 172 VILAGYADR 180 (309)
T ss_dssp EEEEECHHH
T ss_pred EEEeCChHH
Confidence 888886543
No 22
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.98 E-value=1.5e-05 Score=71.92 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=73.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCcee-eEEEEEcCCCCCHHHHHHHHHHHh
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFD-CHAWVPGTYPYDADQMLDIVIKFL 234 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~il~~il~~~ 234 (334)
.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+... ...+. ....++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------------ 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------------ 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC------------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC------------
Confidence 458999999999988887643 23388999999999999999987310 11111 112233332111
Q ss_pred CCCCCccccchhhHHHHHHHHHHH--c-CCCeEEEEEeCCCC--hhHHHHHHhhCCCCCCCeEEEEecCChH
Q 038944 235 MPSSRLSEIMDKNYEMKKIILHEY--L-MTKRYLNVIDDVWN--IEVCDIIREILPDNQNRSRVLITLTEIK 301 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdvw~--~~~w~~l~~~l~~~~~gsrIivTTr~~~ 301 (334)
..... .....+... + .+++.++++|++.. ....+.+...+.....+.++|+||....
T Consensus 82 --------~~~~~--~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 82 --------IDVVR--HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp --------TTTSS--HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred --------hHHHH--HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 00011 222222211 2 36688999999864 3556667767655556788888876543
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.97 E-value=1.4e-05 Score=63.96 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=35.0
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 157 DTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+++|....+.++.+.+..-...-.-+-|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998887642212233679999999999999999985
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.95 E-value=1.7e-05 Score=69.63 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=35.8
Q ss_pred CCCeeechhhHHHHHHHHh---cCC-------CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLI---EGP-------PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++.+.+++. ... ...+-+.++|++|+|||++|+.+.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999888877766543 211 23456789999999999999999983
No 25
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.94 E-value=4.5e-05 Score=70.46 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|++..++.+.+.+..+.. ...+.|+|++|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-CSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999876532 246789999999999999999874
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.92 E-value=2.3e-05 Score=71.49 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCCeeechhhHHHHHHHHh----------cCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 154 KSRDTVGLDDRMEELLDLLI----------EGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-.+++|.+..++.|.+.+. ......+-+.++|++|+|||+||+.+.+.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999988873 11223457899999999999999999983
No 27
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.86 E-value=5e-05 Score=69.00 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=72.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHh
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFL 234 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~ 234 (334)
-.+++|.+..++.+.+++..+. ...++.+.|++|+||||+|+.+.+. ... ....++.+. ... ..++.++.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~-~~i~~~~~-- 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKI-DFVRGPLT-- 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCH-HHHHTHHH--
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCH-HHHHHHHH--
Confidence 4678999999999999998654 3357788899999999999999883 321 223344332 221 11111111
Q ss_pred CCCCCccccchhhHHHHHHHHHHH--cCCCeEEEEEeCCCCh---hHHHHHHhhCCCCCCCeEEEEecCChH
Q 038944 235 MPSSRLSEIMDKNYEMKKIILHEY--LMTKRYLNVIDDVWNI---EVCDIIREILPDNQNRSRVLITLTEIK 301 (334)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVlDdvw~~---~~w~~l~~~l~~~~~gsrIivTTr~~~ 301 (334)
..... +.+++.+++|||+..- +..+.+...+.....+.++|+||....
T Consensus 95 -------------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 95 -------------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp -------------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred -------------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 11111 1347789999999753 345555544433234567888876543
No 28
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=1.4e-05 Score=63.94 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-+++|.+..++++.+.+..-.....-+-|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35789999998888887641111223679999999999999999984
No 29
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.82 E-value=0.00013 Score=64.58 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCCeeechhhHHHHHHH-------Hhc-CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDL-------LIE-GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...++|.....+.++.. +.. ......-+.++|++|+|||+||+.+.+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578888777777663 322 2345678899999999999999999984
No 30
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=2.4e-05 Score=65.96 Aligned_cols=88 Identities=14% Similarity=0.068 Sum_probs=49.9
Q ss_pred hHHHHHHHHhcCCC--CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc
Q 038944 164 RMEELLDLLIEGPP--QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS 241 (334)
Q Consensus 164 ~~~~l~~~L~~~~~--~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~ 241 (334)
..+.+..++..... ....+.|+|.+|+||||||+.+++.. ........|++. ..++..+........
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~--- 105 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYV------PELFRELKHSLQDQT--- 105 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEH------HHHHHHHHHC---CC---
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEh------HHHHHHHHHHhccch---
Confidence 34455556554322 12678999999999999999999842 222234455543 345555544332111
Q ss_pred ccchhhHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 038944 242 EIMDKNYEMKKIILHEYLMTKRYLNVIDDVWN 273 (334)
Q Consensus 242 ~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~ 273 (334)
.. .+...+.. .-+|||||++.
T Consensus 106 ----~~--~~~~~~~~-----~~~lilDei~~ 126 (202)
T 2w58_A 106 ----MN--EKLDYIKK-----VPVLMLDDLGA 126 (202)
T ss_dssp ----CH--HHHHHHHH-----SSEEEEEEECC
T ss_pred ----HH--HHHHHhcC-----CCEEEEcCCCC
Confidence 11 33333332 13999999965
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.00014 Score=66.38 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=37.5
Q ss_pred CCCeeechhhHHHHHHHHhc----------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 35688999998888877631 1123467889999999999999999984
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.81 E-value=1.8e-05 Score=75.51 Aligned_cols=121 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred Cee-echhhH--HHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCcee--eEEEEEcCCCCCHHHHHHHHH
Q 038944 157 DTV-GLDDRM--EELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFD--CHAWVPGTYPYDADQMLDIVI 231 (334)
Q Consensus 157 ~~v-Gr~~~~--~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~il~~il 231 (334)
+++ |..... ..+..+...... ...+.|+|.+|+||||||+.+.+ .....|. ...+++ ...+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~------~~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHH
Confidence 344 644332 333333333322 66799999999999999999998 3322221 123443 333444454
Q ss_pred HHhCCCCCccccchhhHHHHHHHHHHHcCCCeEEEEEeCCCCh----hHHHHHHhhCCC-CCCCeEEEEecCC
Q 038944 232 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWNI----EVCDIIREILPD-NQNRSRVLITLTE 299 (334)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~----~~w~~l~~~l~~-~~~gsrIivTTr~ 299 (334)
..+.... ...+...+..+.-+|+|||+... ..-+.+...+.. ...|..||+||.+
T Consensus 177 ~~~~~~~-------------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 177 DSMKEGK-------------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHTTC-------------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHccc-------------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4443211 11223333435679999999643 222333333211 1346788888875
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.78 E-value=0.00018 Score=66.36 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=37.8
Q ss_pred CCCeeechhhHHH---HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEE---LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++. +...+..+....+.+.++|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999988776 45555555444568899999999999999999984
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=0.00024 Score=64.04 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++.|.+++... -...+.+.++|++|+||||||+.+.+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999888888876531 134567899999999999999999984
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.74 E-value=4.9e-05 Score=70.36 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=37.9
Q ss_pred CCeeechhhHHHHHHHHhc----------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999888742 1123567889999999999999999983
No 36
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=2.5e-05 Score=71.66 Aligned_cols=135 Identities=9% Similarity=0.030 Sum_probs=71.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCcee-eEEEEEcCCCCCHHHHHHHHHHH
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFD-CHAWVPGTYPYDADQMLDIVIKF 233 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~il~~il~~ 233 (334)
-.+++|.+..++.+..++..+.. +.+.++|++|+||||+|+.+.+.......+. ....+..+....... +++.+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHH
Confidence 45689999999999999877542 2388999999999999999987311000111 122233333222222 2222221
Q ss_pred hCCCCCccccchhhHHHHHHHHHHHcCCCeEEEEEeCCCC--hhHHHHHHhhCCCCCCCeEEEEecCCh
Q 038944 234 LMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWN--IEVCDIIREILPDNQNRSRVLITLTEI 300 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~--~~~w~~l~~~l~~~~~gsrIivTTr~~ 300 (334)
+...... .... . .....-.++.-+|++|++.. ....+.+...+.......++|++|...
T Consensus 113 ~~~~~~~-~~~~----~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 113 FARLTVS-KPSK----H---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHHSCCC-CCCT----T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred Hhhhccc-ccch----h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 1110000 0000 0 00111124557999999853 344555555544334457777776543
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=8.9e-05 Score=68.07 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=35.2
Q ss_pred CCeeechhhHHHHHHHH-hcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 156 RDTVGLDDRMEELLDLL-IEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|.+...+.+.+++ ..+. ... +.|+|+.|+||||+++.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 45889998888888887 4433 223 89999999999999998876
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.67 E-value=0.00022 Score=67.96 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=38.4
Q ss_pred CCCCeeechhhHHHHHHHHhc----------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 154 KSRDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+.
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999887731 1123467889999999999999999984
No 39
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.63 E-value=0.00011 Score=68.61 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCCeeechhhHHHHHHHHhcC----------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 154 KSRDTVGLDDRMEELLDLLIEG----------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-.+++|.+..++.|.+++... ....+-+.|+|.+|+|||+||+.+.+.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999998887321 123467899999999999999999883
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.62 E-value=9.7e-05 Score=68.29 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=37.2
Q ss_pred CCCeeechhhHHHHHHHHhc----------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999887731 1122345788999999999999999984
No 41
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.58 E-value=5.2e-05 Score=66.88 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|.+..+..+.+.+..-.....-+.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999999888777542112245679999999999999999984
No 42
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.57 E-value=6e-05 Score=61.97 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-..++|++.+++.+.+.+.... ...+.|+|.+|+||||||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999997643 445689999999999999999874
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.55 E-value=0.00026 Score=67.46 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCCeeechhhH---HHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRM---EELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..+ ..|...+..+. ...+.++|.+|+||||||+.+.+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 45688988777 67777776654 467899999999999999999983
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.54 E-value=4.3e-05 Score=69.26 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=38.1
Q ss_pred CCCeeechhhHHHHHHHHhc---CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIE---GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|++..++.+..++.. .......+.|+|++|+|||+||+.+++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999988888763 1223456889999999999999999883
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.48 E-value=0.00016 Score=69.80 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=37.7
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|.+..++.|.+++... .....-+.|+|.+|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999998877532 233456889999999999999999883
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.48 E-value=8.3e-05 Score=67.62 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 166 EELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..+..++..+......+.|+|++|+||||||+.+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3444444443334567899999999999999999873
No 47
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.46 E-value=0.00037 Score=62.96 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=37.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|....+.++.+.+..-.....-+.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 45889999999998888652222335679999999999999999984
No 48
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.00015 Score=64.85 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=38.2
Q ss_pred CCCeeechhhHHHHHHHHhcC----------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEG----------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++.+.+++... ....+.+.++|++|+||||||+.+.+.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999998887431 123467889999999999999999983
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.34 E-value=0.00028 Score=67.73 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|++.+++.++..|.... ..-+.++|.+|+|||++|+.+...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997743 234578999999999999999873
No 50
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.0011 Score=53.79 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=56.3
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc--------ccchhhHHHH
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS--------EIMDKNYEMK 251 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~--------~~~~~~~~~l 251 (334)
.+|.|.|++|+||||+|+.+ .. .. |. ++ +..++++..+..-+...... ...... ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~--~g--~~---~i------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 65 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE--RG--AK---VI------VMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDG--VV 65 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH--TT--CE---EE------EHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTT--HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH--CC--Cc---EE------EHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHH--HH
Confidence 47999999999999999999 52 21 21 22 23455555554433111000 000111 23
Q ss_pred HHHHHHHc-CCCeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHH
Q 038944 252 KIILHEYL-MTKRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMF 303 (334)
Q Consensus 252 ~~~l~~~L-~~kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va 303 (334)
...+...+ ......+|+|.+.+...++.+...++ ....+|....+.+++
T Consensus 66 ~~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~ 115 (179)
T 3lw7_A 66 ARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKIR 115 (179)
T ss_dssp HHHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHHH
Confidence 34444555 23345688899977777777766553 234455444444443
No 51
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00069 Score=61.96 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|.+..++.|..++..+. ++.+.++|++|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 457888888888888887654 223889999999999999999873
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.33 E-value=0.00061 Score=61.17 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=37.1
Q ss_pred CeeechhhHHHHHHHHhcC-------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 157 DTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.++|.+..++.+...+... ......+.++|.+|+||||+|+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 4789999988888877642 123468999999999999999999873
No 53
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.31 E-value=0.0017 Score=54.90 Aligned_cols=86 Identities=9% Similarity=0.000 Sum_probs=53.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCC-----------CCccccchh
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPS-----------SRLSEIMDK 246 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~-----------~~~~~~~~~ 246 (334)
.-.++.|+|.+|+|||||+..+.. ..-...+|++....++...+.. +++.++.. ... ...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPS-DFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCT-TTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecC-CHHHH
Confidence 446999999999999999999876 1223567887776666665543 44333221 000 11111
Q ss_pred hHHHHHHHHHHHcCCCeEEEEEeCCC
Q 038944 247 NYEMKKIILHEYLMTKRYLNVIDDVW 272 (334)
Q Consensus 247 ~~~~l~~~l~~~L~~kr~LlVlDdvw 272 (334)
. .....++..+..+.-+||||.+-
T Consensus 92 ~--~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 R--RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp H--HHHHHHHHHCCTTEEEEEEECCC
T ss_pred H--HHHHHHHHHhhcCCCEEEEcCcH
Confidence 2 45556666665457799999974
No 54
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=0.00036 Score=66.89 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCeeechhhHHHHHHHHh---cC-------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLI---EG-------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.++.++++.+.+. .. -...+-+.++|++|+||||||+.+.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999888777766543 21 111234779999999999999999983
No 55
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.0012 Score=59.72 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=75.9
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccC-CCC-CceeeEEEEEcCC-CCCHHHHHHHHHHHhCC
Q 038944 160 GLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSS-YVK-HYFDCHAWVPGTY-PYDADQMLDIVIKFLMP 236 (334)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~il~~il~~~~~ 236 (334)
|-++.++.|.+.+..+. .+..-++|++|+||||+|..+.+.. ... .|.+. .++..+. ...+.. .+++++.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhh
Confidence 34555667777776654 6788899999999999999997631 111 12222 3343332 222222 2233333321
Q ss_pred CCCccccchhhHHHHHHHHHHHcCCCeEEEEEeCCCC--hhHHHHHHhhCCCCCCCeEEEEecCCh-HHHhhccccCccc
Q 038944 237 SSRLSEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWN--IEVCDIIREILPDNQNRSRVLITLTEI-KMFTFLLETLFSL 313 (334)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~--~~~w~~l~~~l~~~~~gsrIivTTr~~-~va~~~~~~~~~~ 313 (334)
.. ..+++-++|+|++.. ....+.+...+-.-...+.+|++|.+. .+-..+.+. .++
T Consensus 77 ~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 77 SP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp CC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred cc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 11 124567889999864 466777776665444567777766443 444444455 555
Q ss_pred ccccC
Q 038944 314 LICVS 318 (334)
Q Consensus 314 l~~l~ 318 (334)
+.+++
T Consensus 136 f~~l~ 140 (305)
T 2gno_A 136 VVVNV 140 (305)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 55555
No 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00017 Score=70.06 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=40.0
Q ss_pred CCCeeechhhHHHHHHHHhcC---------------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEG---------------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|++..++.+.+||... ....+.+.|+|++|+||||+|+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999751 013468999999999999999999984
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.0024 Score=64.92 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=38.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-..++|++.+++.+++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999997653 33467999999999999999986
No 58
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.19 E-value=0.00035 Score=61.13 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=34.4
Q ss_pred CCCeeechhhHHHHHHHH---hcC-------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLL---IEG-------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..++.+.+.+ ... ....+-+.|+|++|+||||||+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 346889888877766543 221 012334789999999999999999884
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.03 E-value=0.00063 Score=61.04 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....+.++|++|+|||+||+.+.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 60
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.95 E-value=0.00043 Score=63.07 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.4
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|++..++.+..++... ......+.|+|++|+|||+||+.+.+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 456899999999998888752 334556899999999999999999873
No 61
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.93 E-value=0.0064 Score=55.41 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 162 DDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 162 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
++..+.+.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH
Confidence 444566666665543 3357889999999999999988763
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.92 E-value=0.0022 Score=65.13 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-..++|++.+++.++..|.... ..-+-++|.+|+|||++|+.+.+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999998743 223679999999999999999863
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0014 Score=61.94 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.++.|.++.+++|.+.+.- +-...+=+-++|++|+|||+||+.+.+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34678899888888776642 1234567889999999999999999983
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0013 Score=62.04 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEccCCccHHHHHHHHHccCCCCCce
Q 038944 154 KSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF 209 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 209 (334)
.-.++.|.++.++.|.+.+.- +-...+=+-++|++|+|||+||+.+.+ ....+|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 345688999999988776642 113456688999999999999999998 444444
No 65
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.84 E-value=0.00074 Score=61.17 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=43.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEc--CCCCCHHHHHHHHHHHhCCCCCccccchhhHHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPG--TYPYDADQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILH 256 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~ 256 (334)
-+++.|+|++|+||||||..+... .-..++|++. +...+. . ..+ ++.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~---~~~--le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y---NTD--FNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C---BCC--HHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h---hcC--HHHHHHHHH
Confidence 456789999999999999998873 1123456665 332110 0 011 225555566
Q ss_pred HHcCCCeEEEEEeCCCC
Q 038944 257 EYLMTKRYLNVIDDVWN 273 (334)
Q Consensus 257 ~~L~~kr~LlVlDdvw~ 273 (334)
+.+...+ +||+|++-.
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 6665445 999999854
No 66
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0013 Score=61.45 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEccCCccHHHHHHHHHccCCCCCce
Q 038944 155 SRDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF 209 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 209 (334)
-.++.|.++.+++|.+.+.- +-...+=+-++|++|.|||.||+.+.+ ....+|
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 35678899888888776532 113445678999999999999999998 444444
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0014 Score=62.20 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=38.9
Q ss_pred CCeeechhhHHHHHHHHhc-----------CCCCceEEEEEccCCccHHHHHHHHHccCCCCCce
Q 038944 156 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF 209 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 209 (334)
.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.+.+ ....+|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 4678899888888776431 113456778999999999999999998 444444
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0013 Score=62.25 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCeeechhhHHHHHHHHh----cC-------CCCceEEEEEccCCccHHHHHHHHHc
Q 038944 155 SRDTVGLDDRMEELLDLLI----EG-------PPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.++.|.++.+++|.+.+. .. -...+=+-++|++|+|||+||+.+.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3567899999998877643 21 13456788899999999999999998
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.77 E-value=0.002 Score=61.41 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=36.9
Q ss_pred CCCCeeechhhHHHHHH---HHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 154 KSRDTVGLDDRMEELLD---LLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~---~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...+++|.++.++.+.. ++..+....+-+-++|++|+|||+||+.+.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 34679999988876544 44444334456788999999999999999984
No 70
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.75 E-value=0.00089 Score=60.53 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCC-CceEEEEEccCCccHHHHHHHHHcc
Q 038944 164 RMEELLDLLIEGPP-QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 164 ~~~~l~~~L~~~~~-~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....+.+++..... ....+.++|.+|+|||+||+.+.+.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455566655322 2467889999999999999999883
No 71
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.72 E-value=0.0031 Score=61.56 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=34.1
Q ss_pred CeeechhhHHHHHHHHhc----CCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 157 DTVGLDDRMEELLDLLIE----GPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+++|.++-+..+.+.+.- ......++.++|++|+||||||+.+..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 467877777776555431 223456899999999999999999988
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.71 E-value=0.0025 Score=64.82 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCCeeechhhHHHHHHHHh----cC-------CCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCH
Q 038944 155 SRDTVGLDDRMEELLDLLI----EG-------PPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDA 223 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 223 (334)
-.++.|.++.+++|.+++. .. -...+-|-++|++|+|||+||+.+.+ ....+| ..|+.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH-----
Confidence 3467888888888877653 22 13456788999999999999999999 555554 223211
Q ss_pred HHHHHHHHHHhCCCCCccccchhhHHHHHHHHHHHcCCCeEEEEEeCCC
Q 038944 224 DQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLNVIDDVW 272 (334)
Q Consensus 224 ~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw 272 (334)
+ ++ .... ..... .+...+.........+|+||++.
T Consensus 273 -~----l~----sk~~---gese~--~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 273 -E----IM----SKLA---GESES--NLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp -H----HH----SSCT---THHHH--HHHHHHHHHTTSCSEEEEEESGG
T ss_pred -H----hh----cccc---hHHHH--HHHHHHHHHHHcCCeEEEEehhc
Confidence 1 11 1111 11112 33444444456678999999985
No 73
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.71 E-value=0.0063 Score=52.17 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=54.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCC----ceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCC----cc---ccchh
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKH----YFDCHAWVPGTYPYDADQMLDIVIKFLMPSSR----LS---EIMDK 246 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~----~~---~~~~~ 246 (334)
.-.++.|+|.+|+|||||+..+........ .-...+|+.....++...+. .+++.++.... .. ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999887322211 12457888877766665543 34455543210 00 01111
Q ss_pred h-HHHHHHHHHHHcC-CCeEEEEEeCCCC
Q 038944 247 N-YEMKKIILHEYLM-TKRYLNVIDDVWN 273 (334)
Q Consensus 247 ~-~~~l~~~l~~~L~-~kr~LlVlDdvw~ 273 (334)
. ...+...+.+.+. .+.-+||||.+-.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 1123334555553 4677999999853
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.67 E-value=0.0014 Score=67.09 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEccCCccHHHHHHHHHccCCCCCce
Q 038944 155 SRDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF 209 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 209 (334)
-.+++|.+..+++|.+++.. .-.....+.++|.+|+||||||+.+.+ ....+|
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~ 266 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF 266 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE
Confidence 35689999999999888753 113345789999999999999999998 444444
No 75
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.66 E-value=0.0014 Score=55.37 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 165 MEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.+.+......-.+++|+|..|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555544334567999999999999999999876
No 76
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0021 Score=54.09 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHhcC-CCCceEEEEEccCCccHHHHHHHHHc
Q 038944 161 LDDRMEELLDLLIEG-PPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 161 r~~~~~~l~~~L~~~-~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+++.++.|.+.+... .....+++|+|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445667787777753 34567999999999999999999876
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.63 E-value=0.0017 Score=66.06 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|.+..++.+...+... ..+...+.++|++|+|||++|+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999998888887632 123447999999999999999999873
No 78
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0015 Score=55.88 Aligned_cols=59 Identities=7% Similarity=0.059 Sum_probs=36.5
Q ss_pred CCeeec---hhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcC
Q 038944 156 RDTVGL---DDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGT 218 (334)
Q Consensus 156 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 218 (334)
.+++|. ....+.+..++... ....+.|+|++|+||||||+.+.+. .........|++.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 456653 24445555555443 3567889999999999999999873 22122234556543
No 79
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.54 E-value=0.0012 Score=58.93 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=37.0
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEG------------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|.+..++.+...+... .....-+.++|.+|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999998877541 122346779999999999999999883
No 80
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.45 E-value=0.0016 Score=59.46 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCeeechhhHHHHHHHHhcC---CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|.+..++.+-..+... ......+.++|++|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678777777766555432 234567899999999999999999983
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.43 E-value=0.004 Score=59.98 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=35.7
Q ss_pred CCCCCeeechhhHHHHHHHHh---cCC-------CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 153 SKSRDTVGLDDRMEELLDLLI---EGP-------PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-.+++|.++.+.++.+... ... .-.+=+.|+|.+|+||||||+.+.+.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345678999888777665543 210 11223899999999999999999984
No 82
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.42 E-value=0.016 Score=52.97 Aligned_cols=95 Identities=6% Similarity=0.001 Sum_probs=57.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCC----ceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCC----cc---ccch
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKH----YFDCHAWVPGTYPYDADQMLDIVIKFLMPSSR----LS---EIMD 245 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~----~~---~~~~ 245 (334)
+.-.++.|+|.+|+|||||+..+........ .-..++|++....|+...+.. ++..++.... .. ...+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4457999999999999999998876422211 123678999888888777654 3455543211 00 0001
Q ss_pred h-hHHHHHHHHHHHcC---CCeEEEEEeCCC
Q 038944 246 K-NYEMKKIILHEYLM---TKRYLNVIDDVW 272 (334)
Q Consensus 246 ~-~~~~l~~~l~~~L~---~kr~LlVlDdvw 272 (334)
. .+..+...+.+.+. .+--+||+|.+-
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1 11133334444443 566799999984
No 83
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.42 E-value=0.0046 Score=56.94 Aligned_cols=87 Identities=18% Similarity=0.076 Sum_probs=53.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHHHH
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMKKI 253 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l~~ 253 (334)
+.-.++.|+|.+|+|||||+..+..... ..=..++|++....++.. .+++++...... ...+.+ ++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e--~~l~ 129 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGE--QALE 129 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHH--HHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHH--HHHH
Confidence 3457999999999999999998876321 111246788877777654 455555432211 111222 4555
Q ss_pred HHHHHcC-CCeEEEEEeCCC
Q 038944 254 ILHEYLM-TKRYLNVIDDVW 272 (334)
Q Consensus 254 ~l~~~L~-~kr~LlVlDdvw 272 (334)
.+...++ ++.-++|+|.+-
T Consensus 130 ~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 130 IVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHHHTSCCSEEEEECTT
T ss_pred HHHHHhhhcCCCeEEehHhh
Confidence 5554442 445589999873
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.42 E-value=0.0033 Score=64.77 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=36.5
Q ss_pred CeeechhhHHHHHHHHhcC-------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 157 DTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.++|.+..++.+...+... +.+...+.|+|.+|+|||++|+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999888887777531 223468899999999999999999873
No 85
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.39 E-value=0.0035 Score=56.11 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 175 GPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 175 ~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
......+|+|+|..|+|||||++.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999998876
No 86
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0037 Score=58.75 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=38.6
Q ss_pred CCeeechhhHHHHHHHHhc----C-------CCCceEEEEEccCCccHHHHHHHHHccCCCCCce
Q 038944 156 RDTVGLDDRMEELLDLLIE----G-------PPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF 209 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 209 (334)
.++.|.++.+++|.+.+.- . -...+=+-++|++|.|||.||+.+.+ ....+|
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 4577899888888776532 1 13456788999999999999999998 344444
No 87
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.33 E-value=0.003 Score=58.21 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=35.7
Q ss_pred eeechhhHHHHHHHHh-------------cCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 158 TVGLDDRMEELLDLLI-------------EGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 158 ~vGr~~~~~~l~~~L~-------------~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
++|.+..++.+...+. ........+.++|++|+|||++|+.+.+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 6899998988888773 11123456889999999999999999984
No 88
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.33 E-value=0.014 Score=52.81 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=57.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCc----eeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCc----c---ccch-
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHY----FDCHAWVPGTYPYDADQMLDIVIKFLMPSSRL----S---EIMD- 245 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~----~---~~~~- 245 (334)
.-.++.|+|.+|+|||||+..+......... -..++|++....++..++.+ +++.++..... . ...+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999888764222211 23678999888888777654 44555443210 0 0011
Q ss_pred hhHHHHHHHHHHHcC--CCeEEEEEeCCC
Q 038944 246 KNYEMKKIILHEYLM--TKRYLNVIDDVW 272 (334)
Q Consensus 246 ~~~~~l~~~l~~~L~--~kr~LlVlDdvw 272 (334)
..+..+...+...+. .+--+||+|.+-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 111134455555553 466799999984
No 89
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.30 E-value=0.016 Score=52.41 Aligned_cols=95 Identities=8% Similarity=0.074 Sum_probs=58.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCC---------ce-----eeEEEEEcCCCCCHHHHHHHHHHHhCCCCCc--
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKH---------YF-----DCHAWVPGTYPYDADQMLDIVIKFLMPSSRL-- 240 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~il~~il~~~~~~~~~-- 240 (334)
+.-.++-|+|.+|+||||||..+..+..... .. ..++|++....|+..++.+. ++.++.....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHh
Confidence 3457999999999999999988875422211 11 46789998888888777643 4555443210
Q ss_pred -----cccchhh-HHHHHHHHHHHcC--CCeEEEEEeCCC
Q 038944 241 -----SEIMDKN-YEMKKIILHEYLM--TKRYLNVIDDVW 272 (334)
Q Consensus 241 -----~~~~~~~-~~~l~~~l~~~L~--~kr~LlVlDdvw 272 (334)
....+.+ +..+...+.+.+. .+--+||+|.+-
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0001111 1134455656554 455699999984
No 90
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.0021 Score=52.01 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|+.|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 91
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.24 E-value=0.0024 Score=52.23 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|++|+||||+++.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 92
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.24 E-value=0.0026 Score=52.64 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 93
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.22 E-value=0.0019 Score=56.72 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCCCeeechhhHHHHHHHHhc----------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 154 KSRDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-.+++|.+..++.+.+.+.. +....+-+.++|++|+|||+||+.+.+.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 345689999888888776541 1111223679999999999999999984
No 94
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.20 E-value=0.012 Score=56.76 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=36.4
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccC
Q 038944 157 DTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSS 203 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 203 (334)
.++|.+..++.+...+..+. -+.++|.+|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHH
Confidence 37899999988888777653 57899999999999999999843
No 95
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.15 E-value=0.0028 Score=53.10 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 96
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.13 E-value=0.0032 Score=64.89 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=38.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-..++|++.++..+++.|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999997754 234678999999999999999873
No 97
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.13 E-value=0.004 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.++.|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.11 E-value=0.01 Score=54.88 Aligned_cols=85 Identities=12% Similarity=-0.009 Sum_probs=52.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMKKII 254 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l~~~ 254 (334)
.-.++-|.|.+|+||||||..+..... ..=..++|++....++.. .++.++...... ...+.+ ++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e--~~l~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGE--QALEI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHH--HHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHH--HHHHH
Confidence 345888999999999999988765321 111367899988877654 244454432110 111223 56666
Q ss_pred HHHHcC-CCeEEEEEeCC
Q 038944 255 LHEYLM-TKRYLNVIDDV 271 (334)
Q Consensus 255 l~~~L~-~kr~LlVlDdv 271 (334)
+...++ ++--+||+|.+
T Consensus 144 l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHHTTTCCSEEEEECT
T ss_pred HHHHHhcCCCCEEEEeCh
Confidence 665554 34458999997
No 99
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.09 E-value=0.003 Score=52.11 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999873
No 100
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.08 E-value=0.0034 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 101
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.04 E-value=0.0026 Score=51.68 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 102
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.00 E-value=0.014 Score=53.83 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=65.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCC---cc-ccchhhHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSR---LS-EIMDKNYEMKKII 254 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~---~~-~~~~~~~~~l~~~ 254 (334)
-.+++|+|+.|+|||||.+.+... +......++ +++..+... ....... .. ...+.. .....
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~---------~~~~~~~~v~q~~~~~~~~--~~~~~ 188 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEF---------VHESKKCLVNQREVHRDTL--GFSEA 188 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCS---------CCCCSSSEEEEEEBTTTBS--CHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHh---------hhhccccceeeeeeccccC--CHHHH
Confidence 359999999999999999988652 111111111 122111100 0000000 00 001112 45557
Q ss_pred HHHHcCCCeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhhc
Q 038944 255 LHEYLMTKRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTFL 306 (334)
Q Consensus 255 l~~~L~~kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~~ 306 (334)
|...|....=+|++|.+-+.+.++.+.... ..|.-||+||...+.+..+
T Consensus 189 La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp HHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHHHH
T ss_pred HHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHHHH
Confidence 888888888899999999888877765552 2366699999988877543
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.99 E-value=0.0021 Score=55.23 Aligned_cols=111 Identities=12% Similarity=-0.027 Sum_probs=58.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCccccchhhHHHHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 258 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~ 258 (334)
-.++.|.|..|+||||++..+...... ....+ ..+.... +.. ....+++.++............ ++...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kV-li~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~--~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY-ADVKY-LVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAP--EILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCE-EEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTH--HHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEE-EEEEecc--Cch-HHHHHHHhcCCCccccccCCHH--HHHHHHHHH
Confidence 468899999999999988666542111 11222 2232222 111 1123344444322211122223 566666665
Q ss_pred cCCCeE-EEEEeCCCC--hhHHHHHHhhCCCCCCCeEEEEecCC
Q 038944 259 LMTKRY-LNVIDDVWN--IEVCDIIREILPDNQNRSRVLITLTE 299 (334)
Q Consensus 259 L~~kr~-LlVlDdvw~--~~~w~~l~~~l~~~~~gsrIivTTr~ 299 (334)
+.+.++ +|++|.+-. .+..+.+.... + .|-.||+|-+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~-~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILA-E--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHH-H--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHH-h--CCCeEEEEecc
Confidence 655555 999999853 34444443322 2 26779999884
No 104
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.98 E-value=0.0046 Score=54.80 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCeeechhhHHHHHHHHhc---C---------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIE---G---------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.++.|.++.++.|.+.+.. . ..... +.++|++|+|||||++.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4577888888887765421 1 11223 899999999999999999984
No 105
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.004 Score=51.31 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|.|.|++|+||||+++.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 106
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.96 E-value=0.0046 Score=51.83 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+|.|+|+.|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999976
No 107
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.93 E-value=0.0077 Score=55.49 Aligned_cols=85 Identities=12% Similarity=-0.039 Sum_probs=50.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMKKII 254 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l~~~ 254 (334)
.-.++.|.|.+|+||||||..+..... ..=..++|++....++... +..++...... ...+.. ++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e--~~~~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGE--QALEI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHH--HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHH--HHHHH
Confidence 456899999999999999988775311 1112578898887777442 34454332110 011112 44444
Q ss_pred HHHHc-CCCeEEEEEeCC
Q 038944 255 LHEYL-MTKRYLNVIDDV 271 (334)
Q Consensus 255 l~~~L-~~kr~LlVlDdv 271 (334)
+.... .++--+||+|.+
T Consensus 133 ~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHHTCCSEEEEECG
T ss_pred HHHHHhccCCCEEEEcCH
Confidence 44333 234458999997
No 108
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.91 E-value=0.0039 Score=52.09 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 109
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.90 E-value=0.016 Score=52.36 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..++|.+..++.+...+..+. -+.++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 458999999998888887642 478899999999999999988
No 110
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.89 E-value=0.033 Score=50.27 Aligned_cols=84 Identities=6% Similarity=0.030 Sum_probs=52.1
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCCCCc--eeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHH-HH
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYVKHY--FDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMK-KI 253 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l-~~ 253 (334)
.++-|.|.+|+|||||+-++.... ... =..++|++....++.. .+++++...... ...+.+ +. ..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~--~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E--~~~l~ 99 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY--MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLE--QLRID 99 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH--HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHH--HHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHH--HHHHH
Confidence 378999999999999987776521 111 1357899888888764 367777653321 111222 43 33
Q ss_pred HHHHH--c-CCCeEEEEEeCCC
Q 038944 254 ILHEY--L-MTKRYLNVIDDVW 272 (334)
Q Consensus 254 ~l~~~--L-~~kr~LlVlDdvw 272 (334)
.+... + .++.-|||+|-|-
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECST
T ss_pred HHHHHHHhhccCceEEEEeccc
Confidence 22222 3 4567899999984
No 111
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.88 E-value=0.068 Score=47.76 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+..+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988864
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.86 E-value=0.013 Score=53.84 Aligned_cols=87 Identities=17% Similarity=0.038 Sum_probs=52.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHHHH
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMKKI 253 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l~~ 253 (334)
+.-.++.|+|.+|+|||||+..+..... ..=..++|++....++.. ..+.++...... ...+.. ++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e--~~l~ 129 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGE--QALE 129 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHH--HHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHH--HHHH
Confidence 3456899999999999999988875311 111357888888777653 244454332210 111222 5555
Q ss_pred HHHHHcC-CCeEEEEEeCCC
Q 038944 254 ILHEYLM-TKRYLNVIDDVW 272 (334)
Q Consensus 254 ~l~~~L~-~kr~LlVlDdvw 272 (334)
.+..... .+--+||+|.+-
T Consensus 130 ~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHHHTTTCCSEEEEECGG
T ss_pred HHHHHHhcCCCCEEEEcChH
Confidence 5554443 345589999973
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.86 E-value=0.0051 Score=51.80 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+..+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999976
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.84 E-value=0.0044 Score=50.95 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+.|.++|+.|+||||+++.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999976
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.84 E-value=0.0055 Score=50.59 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 116
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.84 E-value=0.0045 Score=50.62 Aligned_cols=54 Identities=6% Similarity=-0.046 Sum_probs=36.4
Q ss_pred HHHHHcCCCeEEEEEeCCCCh---h----------------HHHHHHhhCCCC-CCCeEEEEecCChHHHhhcc
Q 038944 254 ILHEYLMTKRYLNVIDDVWNI---E----------------VCDIIREILPDN-QNRSRVLITLTEIKMFTFLL 307 (334)
Q Consensus 254 ~l~~~L~~kr~LlVlDdvw~~---~----------------~w~~l~~~l~~~-~~gsrIivTTr~~~va~~~~ 307 (334)
.+-..+..+.-+++||.-... . .+..+...+..- ..|.-||++|.+.+.+..+.
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~ 166 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVV 166 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEE
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhh
Confidence 455667778889999987643 2 345666666532 23767888899888776543
No 117
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.84 E-value=0.0048 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 118
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.84 E-value=0.0045 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 119
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.82 E-value=0.029 Score=51.44 Aligned_cols=97 Identities=6% Similarity=0.044 Sum_probs=54.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCCce----eeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc-------ccc-
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF----DCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS-------EIM- 244 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~-------~~~- 244 (334)
+.-.++.|+|.+|+|||||+..+.......... ..++|++....+....+ ..+.+..+...... ...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 345799999999999999999988642111111 23488877666654443 33444433221000 000
Q ss_pred hhhHHHHHHHHHHHcC------CCeEEEEEeCCCCh
Q 038944 245 DKNYEMKKIILHEYLM------TKRYLNVIDDVWNI 274 (334)
Q Consensus 245 ~~~~~~l~~~l~~~L~------~kr~LlVlDdvw~~ 274 (334)
.....++...+...+. .+.-+||||.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 0111144445555553 46779999998643
No 120
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.81 E-value=0.0036 Score=52.42 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999773
No 121
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.80 E-value=0.0079 Score=55.60 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=35.0
Q ss_pred CeeechhhHHHHHHHHhc----------------------------CCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 157 DTVGLDDRMEELLDLLIE----------------------------GPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.++|.+..++.|...+.. .......+.++|++|+|||++|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 478998888888777620 0112346889999999999999999983
No 122
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.80 E-value=0.0054 Score=53.34 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCeeechhhHHHHHHHHhc--C---------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIE--G---------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..+.++.+.... . ..... +.|+|.+|+|||||++.+.+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 34678887776666554321 1 11223 899999999999999999984
No 123
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.79 E-value=0.006 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+..+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 124
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.79 E-value=0.0048 Score=51.40 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 125
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.77 E-value=0.0063 Score=51.12 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+|+|+|+.|+||||+++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 126
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.77 E-value=0.0054 Score=50.72 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 127
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.76 E-value=0.0057 Score=51.13 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.75 E-value=0.0051 Score=50.80 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.74 E-value=0.0051 Score=50.61 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|++|+||||+++.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.74 E-value=0.0053 Score=49.72 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+..+|.|.|+.|+||||+++.+.+
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 131
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.69 E-value=0.0055 Score=52.11 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 132
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.69 E-value=0.0063 Score=53.00 Aligned_cols=25 Identities=4% Similarity=0.036 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999977
No 133
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.68 E-value=0.0063 Score=51.40 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 134
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.67 E-value=0.015 Score=55.28 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=38.3
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCC-CHHHHHHHHHH
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPY-DADQMLDIVIK 232 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~il~ 232 (334)
.++.|..-.. -..++|+|.+|+|||||++.+..+... .+-+.++++.+.+.. ...+++.++.+
T Consensus 141 ~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 4555543111 125899999999999999988764221 122445677777654 34455555543
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.67 E-value=0.0048 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 136
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.66 E-value=0.011 Score=54.16 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=31.0
Q ss_pred eechhhHHHHHHHHhc--CCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 159 VGLDDRMEELLDLLIE--GPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 159 vGr~~~~~~l~~~L~~--~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
|+.+.-.+.+++.+.. .......|.++|++|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445556666666643 234466799999999999999998765
No 137
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.66 E-value=0.036 Score=52.71 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCC-CHHHHHHHHHHH
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPY-DADQMLDIVIKF 233 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~il~~ 233 (334)
+.++.|..=. .-.-++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+.. .+.+++.++.+.
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665311 12368999999999999999888742 12334567788888765 456777777765
No 138
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.66 E-value=0.0066 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 139
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.62 E-value=0.0054 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.|+|++|+||||+++.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 140
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.62 E-value=0.0076 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....+|.|.|+.|+||||+++.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999873
No 141
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.60 E-value=0.007 Score=50.07 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 142
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.59 E-value=0.0072 Score=49.89 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+|.|+|+.|+||||+++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.0073 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.57 E-value=0.0059 Score=51.28 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.56 E-value=0.0054 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999975
No 146
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.56 E-value=0.0054 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.55 E-value=0.0072 Score=52.82 Aligned_cols=23 Identities=13% Similarity=0.032 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+++.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999763
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.55 E-value=0.0072 Score=53.40 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCCCCeeechhhHHHHHHHHhc--C---------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 153 SKSRDTVGLDDRMEELLDLLIE--G---------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-.+++|.+..+.++.+.... . ..... +.|+|.+|+|||||++.+.+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 3445688988777666554421 1 11223 889999999999999999984
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.55 E-value=0.011 Score=51.47 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcC---CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 164 RMEELLDLLIEG---PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 164 ~~~~l~~~L~~~---~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..+.++..+..+ .....+|.++|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334444444432 234578999999999999999999873
No 150
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.54 E-value=0.0072 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+++|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 151
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.53 E-value=0.0073 Score=49.48 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 152
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.52 E-value=0.0054 Score=49.08 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-..+.|+|..|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 153
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.52 E-value=0.0079 Score=52.70 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 154
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.51 E-value=0.0076 Score=54.51 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHH
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
.+.+||+|.|-|||||||.+-.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 357999999999999999887775
No 155
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.50 E-value=0.039 Score=52.67 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCC-CHHHHHHHHHHHhCCC------CCc
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPY-DADQMLDIVIKFLMPS------SRL 240 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~il~~~~~~------~~~ 240 (334)
.++.|..=. +-.-++|+|..|+|||+|++.+.++. .+.|-++++++-+.+.. .+.+++.++.+.-... ...
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 455554321 12358999999999999999888742 22345678888888766 4667777776542221 000
Q ss_pred c---ccchh------hHHHHHHHHHHHc---CCCeEEEEEeCCC
Q 038944 241 S---EIMDK------NYEMKKIILHEYL---MTKRYLNVIDDVW 272 (334)
Q Consensus 241 ~---~~~~~------~~~~l~~~l~~~L---~~kr~LlVlDdvw 272 (334)
. ..++. .--...-.+-+++ +|+..|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 00110 0002233344555 4689999999984
No 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.49 E-value=0.012 Score=51.11 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 166 EELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++..-.........+|.|.|++|+||||+|+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334333333233567899999999999999999976
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.48 E-value=0.0082 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.+.|++|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 158
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.48 E-value=0.004 Score=57.78 Aligned_cols=53 Identities=11% Similarity=-0.152 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCC-CCceeeEEEEEcCCCC
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYV-KHYFDCHAWVPGTYPY 221 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~ 221 (334)
++++.+..=. .-..++|+|.+|+|||||++.+.+.... ...+.| +++-+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 4555555422 1247899999999999999988762110 112344 356677654
No 159
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.48 E-value=0.0092 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+|.+.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 160
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.47 E-value=0.012 Score=53.47 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+..+++|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998865
No 161
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.46 E-value=0.014 Score=51.93 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 162
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.45 E-value=0.043 Score=51.28 Aligned_cols=94 Identities=6% Similarity=-0.022 Sum_probs=52.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCC----ceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCc----c---ccchh
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKH----YFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRL----S---EIMDK 246 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~----~---~~~~~ 246 (334)
.-.++.|+|.+|+|||||+..+.-...... .-...+|+.....++...+. .+.+.++..... . ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 346999999999999999997652211111 22357888877777766543 355665542110 0 00111
Q ss_pred h-HHHHHHHHHHHc-CCCeEEEEEeCCC
Q 038944 247 N-YEMKKIILHEYL-MTKRYLNVIDDVW 272 (334)
Q Consensus 247 ~-~~~l~~~l~~~L-~~kr~LlVlDdvw 272 (334)
. ...+...+.+.+ ..+--+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 0 002333333333 2456789999974
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.44 E-value=0.084 Score=49.86 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=21.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+..||.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999887764
No 164
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.43 E-value=0.011 Score=49.50 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCeE-EEEEeCCCCh-----hHHHHHHhhCCCCCCCeEEEEecCCh
Q 038944 250 MKKIILHEYLMTKRY-LNVIDDVWNI-----EVCDIIREILPDNQNRSRVLITLTEI 300 (334)
Q Consensus 250 ~l~~~l~~~L~~kr~-LlVlDdvw~~-----~~w~~l~~~l~~~~~gsrIivTTr~~ 300 (334)
......++.+.+.+| |||||++-.. -..+.+...+.......-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 455566667765555 9999998332 22333444333333345599999975
No 165
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.43 E-value=0.0081 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999875
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.42 E-value=0.0086 Score=50.13 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+|.|.|++|+||||+++.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 167
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.42 E-value=0.0094 Score=53.87 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+++|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457999999999999999999876
No 168
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.42 E-value=0.0059 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999977
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.40 E-value=0.009 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|+.|+||||+++.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 170
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.39 E-value=0.0081 Score=49.82 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|++|+||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 171
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.39 E-value=0.017 Score=48.98 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999888764
No 172
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.36 E-value=0.032 Score=51.67 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=59.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEE-EEEcCCCCCHHHHHHHHHHHhCCCCC-ccc---cchhhHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHA-WVPGTYPYDADQMLDIVIKFLMPSSR-LSE---IMDKNYEMKK 252 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~il~~il~~~~~~~~-~~~---~~~~~~~~l~ 252 (334)
.-.+++|+|..|+|||||.+.+..- ........+ ++.-+-.+. +..... -.. ..+.. .+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~-----------~~~~~~~v~Q~~~g~~~~--~~~ 199 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYV-----------FKHKKSIVNQREVGEDTK--SFA 199 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSC-----------CCCSSSEEEEEEBTTTBS--CSH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhh-----------hccCceEEEeeecCCCHH--HHH
Confidence 3568999999999999999988752 111101222 222111110 000000 000 00112 344
Q ss_pred HHHHHHcCCCeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhh
Q 038944 253 IILHEYLMTKRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTF 305 (334)
Q Consensus 253 ~~l~~~L~~kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~ 305 (334)
..+...|....=+|++|.+-+.+.+..+.... ..|.-|+.|+...+++..
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHHH
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHHH
Confidence 56667776666689999998776554433332 236668888887765543
No 173
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.35 E-value=0.007 Score=49.03 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 174
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.35 E-value=0.0054 Score=51.61 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|+|.|..|+||||+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 175
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.34 E-value=0.0087 Score=49.34 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.34 E-value=0.0064 Score=49.78 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=17.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.34 E-value=0.017 Score=53.03 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 165 MEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554445678999999999999999988854
No 178
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.33 E-value=0.011 Score=51.30 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+++|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 179
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.32 E-value=0.011 Score=50.53 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...+||.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 180
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.29 E-value=0.0094 Score=48.04 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 181
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.26 E-value=0.053 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...++|.++|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999888763
No 182
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.25 E-value=0.0078 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|+.|+|||||++.+..-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999863
No 183
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.23 E-value=0.012 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.23 E-value=0.012 Score=47.63 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+++++|..|.|||||.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 185
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.23 E-value=0.012 Score=49.60 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 162 DDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 162 ~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+..+.+...+.. ....++.|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3334444444432 24789999999999999999888764
No 186
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.22 E-value=0.0087 Score=54.37 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|.+..+..+...+.... ..-+-++|.+|+|||+||+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3458898876665544443322 123889999999999999999874
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.22 E-value=0.019 Score=52.03 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+++|.|..|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999865
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.21 E-value=0.011 Score=51.66 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 189
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.19 E-value=0.0066 Score=49.82 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 190
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.14 E-value=0.011 Score=50.04 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...|.+.|++|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 191
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.14 E-value=0.012 Score=49.37 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|+.|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 192
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.14 E-value=0.013 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 193
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.14 E-value=0.013 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+-.+|+|.|+.|+||||+++.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999887
No 194
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.13 E-value=0.02 Score=54.25 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEG------------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|.+..++.+...+... ....+-+.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 34899998888887766321 123456889999999999999999883
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.12 E-value=0.011 Score=49.62 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-+++.|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999863
No 196
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.10 E-value=0.0094 Score=49.63 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|+|++|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999987
No 197
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.08 E-value=0.013 Score=52.68 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+..+++|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998863
No 198
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.08 E-value=0.011 Score=49.47 Aligned_cols=23 Identities=9% Similarity=-0.145 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 199
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.07 E-value=0.025 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988864
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.04 E-value=0.058 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+..++.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999888763
No 201
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.03 E-value=0.012 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...|.|.|++|+||||+++.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 202
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.03 E-value=0.027 Score=50.65 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+++|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.01 E-value=0.013 Score=50.17 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999873
No 204
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.97 E-value=0.016 Score=47.37 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+|.+.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.95 E-value=0.015 Score=49.36 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=31.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCC----CceeeEEEEEcCCCCCHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVK----HYFDCHAWVPGTYPYDADQ 225 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~ 225 (334)
.-.+++|+|..|+|||||++.+....... ..-...+|+.-...+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 34699999999999999999997521111 0123467776655454433
No 206
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.95 E-value=0.014 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.. .+++|+|..|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7999999999999999999975
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.95 E-value=0.016 Score=48.87 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.94 E-value=0.014 Score=48.29 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.92 E-value=0.014 Score=48.68 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999883
No 210
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.92 E-value=0.075 Score=48.26 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=58.8
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCccccc--hhhHHHHHHHHHH
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLSEIM--DKNYEMKKIILHE 257 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~~~~--~~~~~~l~~~l~~ 257 (334)
.+++|+|..|.|||||.+.+..-.... ...+.+.-...+... ......... ... .....+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~-----------~~~~~i~~~~ggg~--~~r~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFK-----------HHKNYTQLFFGGNI--TSADCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCS-----------SCSSEEEEECBTTB--CHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccc-----------cchhEEEEEeCCCh--hHHHHHHH
Confidence 479999999999999999998732111 123333222111100 000000000 111 33345556
Q ss_pred HcCCCeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhhc
Q 038944 258 YLMTKRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTFL 306 (334)
Q Consensus 258 ~L~~kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~~ 306 (334)
.|..+.=+|+||.+-+.+.++.+... ..+ +.-+|+||...++...+
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNVL-CSG--HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHHH-HTT--CCCEEEEEECSSHHHHH
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHHH-hcC--CCEEEEEEcccHHHHHh
Confidence 67667778899999887766655433 222 22267777766655443
No 211
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.92 E-value=0.017 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 212
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.91 E-value=0.025 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...++.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999999988875
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.91 E-value=0.014 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.2
Q ss_pred ceEEEEEccCCccHHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
-.+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 214
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.91 E-value=0.012 Score=49.89 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...|.|.|++|+||||+++.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 215
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.91 E-value=0.012 Score=49.09 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.3
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+++|+|..|+|||||.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998875
No 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.90 E-value=0.014 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999975
No 217
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.90 E-value=0.019 Score=59.45 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=30.5
Q ss_pred CCCeEEEEEeCCCCh---hHH----HHHHhhCCCCCCCeEEEEecCChHHHhhccc
Q 038944 260 MTKRYLNVIDDVWNI---EVC----DIIREILPDNQNRSRVLITLTEIKMFTFLLE 308 (334)
Q Consensus 260 ~~kr~LlVlDdvw~~---~~w----~~l~~~l~~~~~gsrIivTTr~~~va~~~~~ 308 (334)
..++-|++||..-.. ..- ..+...+.. ..|+.||++|...+++..+..
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~lad~ 793 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALANQ 793 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGGGT
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHhcc
Confidence 466789999999542 111 222222321 248899999999998876543
No 218
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.89 E-value=0.013 Score=50.15 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 219
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.89 E-value=0.026 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+++|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999998864
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.79 E-value=0.029 Score=53.68 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999998865
No 221
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.79 E-value=0.0098 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=16.4
Q ss_pred ceEEEEEccCCccHHHHHHHHH-c
Q 038944 179 LSVVVILDSIGLDKAAFAGEAY-N 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~-~ 201 (334)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 222
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.78 E-value=0.018 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998864
No 223
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.78 E-value=0.016 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.1
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 224
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.76 E-value=0.017 Score=47.52 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++.|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 579999999999999999998863
No 225
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.70 E-value=0.014 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 226
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.68 E-value=0.016 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 227
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.67 E-value=0.016 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 228
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.64 E-value=0.014 Score=50.98 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 229
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.64 E-value=0.018 Score=48.58 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=19.2
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 230
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.61 E-value=0.019 Score=47.93 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.61 E-value=0.017 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.59 E-value=0.043 Score=51.63 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988864
No 233
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.59 E-value=0.017 Score=49.95 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 234
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.58 E-value=0.019 Score=50.07 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.58 E-value=0.017 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 236
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.54 E-value=0.017 Score=49.01 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...|.|.|++|+||||+++.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999977
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.53 E-value=0.02 Score=49.70 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999974
No 238
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.53 E-value=0.12 Score=47.85 Aligned_cols=53 Identities=13% Similarity=-0.108 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCC-CCceeeEEEEEcCCC
Q 038944 166 EELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYV-KHYFDCHAWVPGTYP 220 (334)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~ 220 (334)
-++++.|..=.. -.-++|+|.+|+|||+|++.+.+.... ...+.| +++-+.+.
T Consensus 163 iraID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccC-CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 356777764221 236799999999999999988773111 122343 45666654
No 239
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.51 E-value=0.076 Score=50.72 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=58.6
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHH-HHHHccCCCCCcee-eEEEEEcCCCC-CHHHHHHHHHHHhCCCCCcc--c
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFA-GEAYNSSYVKHYFD-CHAWVPGTYPY-DADQMLDIVIKFLMPSSRLS--E 242 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~il~~il~~~~~~~~~~--~ 242 (334)
.++.|..=. .-.-++|+|..|+|||+|| ..+.+.. +-+ .++++-+.+.. .+.++..++.+.-....... .
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 455554311 1124789999999999995 6777743 234 34677777765 45566666655322111100 0
Q ss_pred cchhh--HH----HHHHHHHHHc--CCCeEEEEEeCCCCh-hHHHHHH
Q 038944 243 IMDKN--YE----MKKIILHEYL--MTKRYLNVIDDVWNI-EVCDIIR 281 (334)
Q Consensus 243 ~~~~~--~~----~l~~~l~~~L--~~kr~LlVlDdvw~~-~~w~~l~ 281 (334)
..+.. .. ...-.+-+++ +|+..||++||+-.- ..+..+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REis 274 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELS 274 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHH
Confidence 11110 00 1112233333 689999999998432 4444443
No 240
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.51 E-value=0.019 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 45899999999999999999975
No 241
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.49 E-value=0.019 Score=49.30 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|..|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 242
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.48 E-value=0.019 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|.|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999975
No 243
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.46 E-value=0.021 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.45 E-value=0.02 Score=49.88 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 245
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.41 E-value=0.017 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.39 E-value=0.021 Score=50.07 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 247
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.37 E-value=0.021 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 248
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.37 E-value=0.1 Score=49.96 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=54.2
Q ss_pred EEEEEccCCccHHHHH-HHHHccCCCCCcee-eEEEEEcCCCC-CHHHHHHHHHHHhCCCCCcc--ccchh----hH--H
Q 038944 181 VVVILDSIGLDKAAFA-GEAYNSSYVKHYFD-CHAWVPGTYPY-DADQMLDIVIKFLMPSSRLS--EIMDK----NY--E 249 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~il~~il~~~~~~~~~~--~~~~~----~~--~ 249 (334)
-++|+|..|+|||+|| ..+.+.. . -+ .++++-+.+.. .+.++..++.+.-....... ...+. .+ -
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK--G--QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT--T--TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 5789999999999995 6777743 2 34 34677777765 45566666654211100000 00000 00 0
Q ss_pred HHHHHHHHHc--CCCeEEEEEeCCCC-hhHHHHHHh
Q 038944 250 MKKIILHEYL--MTKRYLNVIDDVWN-IEVCDIIRE 282 (334)
Q Consensus 250 ~l~~~l~~~L--~~kr~LlVlDdvw~-~~~w~~l~~ 282 (334)
...-.+-+++ +|+..||++||+-. ...+..+..
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl 288 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSL 288 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhh
Confidence 1122233333 68999999999843 245555443
No 249
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.35 E-value=0.021 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 250
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.33 E-value=0.024 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.30 E-value=0.036 Score=44.37 Aligned_cols=23 Identities=4% Similarity=0.107 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..++|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 252
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.29 E-value=0.022 Score=50.13 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999975
No 253
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.29 E-value=0.022 Score=49.61 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999976
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.29 E-value=0.026 Score=48.41 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999886
No 255
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.28 E-value=0.039 Score=51.14 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++-+.-.-+.-.+++|+|++|+|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33333333334456999999999999999999987
No 256
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.26 E-value=0.031 Score=44.05 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 257
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.25 E-value=0.023 Score=49.61 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 258
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.24 E-value=0.025 Score=51.54 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 259
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.24 E-value=0.027 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.118 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...|.+.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999873
No 260
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.24 E-value=0.13 Score=47.08 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....++++|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.23 E-value=0.025 Score=47.71 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=19.3
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|.|++|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.22 E-value=0.023 Score=50.40 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999975
No 263
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.21 E-value=0.025 Score=48.15 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 264
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.20 E-value=0.035 Score=45.30 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999998864
No 265
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.19 E-value=0.03 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999874
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.19 E-value=0.026 Score=48.70 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 267
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.19 E-value=0.15 Score=48.75 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=58.6
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHH-HHHHccCCCCCceeeEEEEEcCCCC-CHHHHHHHHHHHhCCCCCcc--cc
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFA-GEAYNSSYVKHYFDCHAWVPGTYPY-DADQMLDIVIKFLMPSSRLS--EI 243 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~il~~~~~~~~~~--~~ 243 (334)
.++.|..=.. -.-++|.|..|+|||+|+ ..+.|. ....+ .++++-+.+.. .+.++..++.+.-....... ..
T Consensus 152 aID~l~Pigr-GQR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv-~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGR-GQRELIIGDRQTGKTALAIDAIINQ--RDSGI-KCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBT-TCBCEEEESSSSSHHHHHHHHHHTT--SSSSC-EEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eecccccccc-CCEEEeecCCCCCcchHHHHHHHhh--ccCCc-eEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 5555543111 124789999999999996 677773 12222 35788888765 45566666554321111000 00
Q ss_pred chh--------h--HHHHHHHHHHHcCCCeEEEEEeCCCCh-hHHHHHH
Q 038944 244 MDK--------N--YEMKKIILHEYLMTKRYLNVIDDVWNI-EVCDIIR 281 (334)
Q Consensus 244 ~~~--------~--~~~l~~~l~~~L~~kr~LlVlDdvw~~-~~w~~l~ 281 (334)
.+. . .=.+++.++. +|+..||++||+-.- ..+.++.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~A~A~REis 274 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSKQAVAYRQIS 274 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHHHHHHHHHHH
Confidence 000 0 0023344443 699999999999432 4444444
No 268
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.14 E-value=0.056 Score=54.76 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 155 SRDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+.
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 346889999888887776531 234457899999999999999999883
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.13 E-value=0.028 Score=49.30 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=57.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEE-cCCCCCHHHHHHHHHHHhCCCCCccccchhhHHHHHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVP-GTYPYDADQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILH 256 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~ 256 (334)
.-.+++|+|+.|+|||||.+.+..-. ...+...+++. .+-.+-.... ..++.+- . -..+.. .+...+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~--~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~---~---~gl~~~--~l~~~la 92 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI--NQTKSYHIITIEDPIEYVFKHK-KSIVNQR---E---VGEDTK--SFADALR 92 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH--HHHCCCEEEEEESSCCSCCCCS-SSEEEEE---E---BTTTBS--CHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC--CCCCCCEEEEcCCcceeecCCc-ceeeeHH---H---hCCCHH--HHHHHHH
Confidence 34699999999999999999987521 11112222221 1100000000 0000000 0 000111 3344455
Q ss_pred HHcCCCeEEEEEeCCCChhHHHHHHhhCCCCCCCeEEEEecCChHHHhhc
Q 038944 257 EYLMTKRYLNVIDDVWNIEVCDIIREILPDNQNRSRVLITLTEIKMFTFL 306 (334)
Q Consensus 257 ~~L~~kr~LlVlDdvw~~~~w~~l~~~l~~~~~gsrIivTTr~~~va~~~ 306 (334)
..|..+.=+|++|..-+.+....+.... ..|.-|++||...+++..+
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~~ 139 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAIDTI 139 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHHHH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHHHH
Confidence 5554455578889997665444433332 2366688888877655433
No 270
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.11 E-value=0.027 Score=49.72 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999985
No 271
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.11 E-value=0.028 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 272
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.10 E-value=0.038 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-..|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 273
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.08 E-value=0.025 Score=46.25 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-|.|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 274
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.06 E-value=0.026 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 275
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.06 E-value=0.028 Score=47.49 Aligned_cols=115 Identities=13% Similarity=-0.055 Sum_probs=59.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc-----------------
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS----------------- 241 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~----------------- 241 (334)
-.++.|+|.+|+|||||++.+..... ..=....|+... .....+...+. .++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999999875211 111134455433 34455544433 333221100
Q ss_pred ----ccchhhHHHHHHHHHHHc---CCCeEEEEEeCCC-----ChhHHHHHHhhCCC--CCCCeEEEEecCCh
Q 038944 242 ----EIMDKNYEMKKIILHEYL---MTKRYLNVIDDVW-----NIEVCDIIREILPD--NQNRSRVLITLTEI 300 (334)
Q Consensus 242 ----~~~~~~~~~l~~~l~~~L---~~kr~LlVlDdvw-----~~~~w~~l~~~l~~--~~~gsrIivTTr~~ 300 (334)
...+.. ++...+.+.+ .-+..+||||.+- +......+...+.. ...|.-||+||...
T Consensus 98 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPE--ELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHH--HHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHH--HHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 001112 4444454443 2234599999985 33223333322211 22477788888876
No 276
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.05 E-value=0.025 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-.+|+|.|..|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999999873
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.04 E-value=0.029 Score=47.38 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=43.2
Q ss_pred EEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCc-------cccchhhHHHHHH
Q 038944 181 VVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRL-------SEIMDKNYEMKKI 253 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~-------~~~~~~~~~~l~~ 253 (334)
+|.|.|++|+||+|.|+.+.++ |.. ..+ +..+++++-+..-+.-... ......+ -...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g~-~~i------stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~--iv~~ 66 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KGF-VHI------STGDILREAVQKGTPLGKKAKEYMERGELVPDD--LIIA 66 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HCC-EEE------EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHH--HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HCC-eEE------cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHH--HHHH
Confidence 6889999999999999999873 221 112 3456666544321100000 0111223 4556
Q ss_pred HHHHHcCCCeEEEEEeCCC
Q 038944 254 ILHEYLMTKRYLNVIDDVW 272 (334)
Q Consensus 254 ~l~~~L~~kr~LlVlDdvw 272 (334)
.+.+.+..... +|||..=
T Consensus 67 lv~~~l~~~~~-~ilDGfP 84 (206)
T 3sr0_A 67 LIEEVFPKHGN-VIFDGFP 84 (206)
T ss_dssp HHHHHCCSSSC-EEEESCC
T ss_pred HHHHhhccCCc-eEecCCc
Confidence 67777754443 5789874
No 278
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.04 E-value=0.32 Score=40.48 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998874
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.04 E-value=0.05 Score=45.92 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 165 MEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...+..++.. -+.-..+.|+|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 5556666654 223346999999999999999888873
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.99 E-value=0.03 Score=50.35 Aligned_cols=24 Identities=4% Similarity=0.129 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999875
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.97 E-value=0.036 Score=50.42 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.|+|+.|+|||||+..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 282
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.95 E-value=0.028 Score=50.77 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.++++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999853
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.93 E-value=0.048 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988864
No 284
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.93 E-value=0.081 Score=50.60 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=53.2
Q ss_pred EEEEEccCCccHHHHH-HHHHccCCCCCcee-eEEEEEcCCCC-CHHHHHHHHHHHhCC--------CCCcccc--c---
Q 038944 181 VVVILDSIGLDKAAFA-GEAYNSSYVKHYFD-CHAWVPGTYPY-DADQMLDIVIKFLMP--------SSRLSEI--M--- 244 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~il~~il~~~~~--------~~~~~~~--~--- 244 (334)
-++|+|..|+|||+|| ..+.+.. . -+ .++++-+.+.. .+.++..++.+.-.. ..+.+.. .
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4789999999999995 6787743 2 33 35677777664 344555555432110 0000000 0
Q ss_pred -hhhHHHHHHHHHHHcCCCeEEEEEeCCCC-hhHHHHHH
Q 038944 245 -DKNYEMKKIILHEYLMTKRYLNVIDDVWN-IEVCDIIR 281 (334)
Q Consensus 245 -~~~~~~l~~~l~~~L~~kr~LlVlDdvw~-~~~w~~l~ 281 (334)
.-. ..++.++. +|+..||++||+-. ...+..+.
T Consensus 241 ~~a~--tiAEyfrd--~G~dVLli~Dsltr~A~A~REis 275 (507)
T 1fx0_A 241 YTGA--ALAEYFMY--RERHTLIIYDDLSKQAQAYRQMS 275 (507)
T ss_dssp HHHH--HHHHHHHH--TTCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHH--cCCcEEEEEecHHHHHHHHHHHH
Confidence 011 23444444 69999999999843 24555554
No 285
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.88 E-value=0.034 Score=43.84 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 286
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.88 E-value=0.072 Score=44.51 Aligned_cols=87 Identities=7% Similarity=-0.039 Sum_probs=46.0
Q ss_pred EEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHHHHHHHH
Q 038944 181 VVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMKKIILHE 257 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l~~~l~~ 257 (334)
.|.|=|.-|+||||.++.+.+. .+..-....+..-+......+.++.++..-....... ...+.. +....+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~--~~~~~I~~ 77 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRN--LLVTEIKQ 77 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHH--HHHHHHHH
Confidence 3667799999999999999873 3222222333333333445555666654322110000 011112 44556666
Q ss_pred HcCCCeEEEEEeCCC
Q 038944 258 YLMTKRYLNVIDDVW 272 (334)
Q Consensus 258 ~L~~kr~LlVlDdvw 272 (334)
.|...+ .+|.|--.
T Consensus 78 ~L~~g~-~Vi~DRy~ 91 (197)
T 3hjn_A 78 YLSEGY-AVLLDRYT 91 (197)
T ss_dssp HHTTTC-EEEEESCH
T ss_pred HHHCCC-eEEecccc
Confidence 675443 56777654
No 287
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.88 E-value=0.06 Score=49.05 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHH
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
+++-+.-.-....+++|+|.+|+|||||.+.+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444443333456899999999999999999987
No 288
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.86 E-value=0.04 Score=44.88 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999873
No 289
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.84 E-value=0.035 Score=52.40 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+|.|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988865
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.82 E-value=0.031 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 291
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.82 E-value=0.056 Score=51.06 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=51.2
Q ss_pred EEEEEccCCccHHHHHHHHHccCCCC--------Ccee-eEEEEEcCCCC-CHHHHHHHHHHHhCCCCCcc---ccchh-
Q 038944 181 VVVILDSIGLDKAAFAGEAYNSSYVK--------HYFD-CHAWVPGTYPY-DADQMLDIVIKFLMPSSRLS---EIMDK- 246 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~il~~il~~~~~~~~~~---~~~~~- 246 (334)
-++|.|..|+|||+|+..+.+..... ++=+ .++++-+.+.. .+.++..++.+. +.-.... ...+.
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GALSRSVLFLNKADDP 227 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGGGGEEEEEEETTSC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccccceEEEEECCCCC
Confidence 46788999999999999998865441 1111 45667777654 455666665442 1000000 00000
Q ss_pred --h---HHHHHHHHHHHc---CCCeEEEEEeCCC
Q 038944 247 --N---YEMKKIILHEYL---MTKRYLNVIDDVW 272 (334)
Q Consensus 247 --~---~~~l~~~l~~~L---~~kr~LlVlDdvw 272 (334)
. .-...-.+-+++ +|+..|+++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 001223344554 4899999999984
No 292
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.80 E-value=0.035 Score=50.25 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 293
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.79 E-value=0.034 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999986
No 294
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.73 E-value=0.05 Score=53.69 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 156 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35788888887777666654 37899999999999999999873
No 295
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.72 E-value=0.026 Score=50.74 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999975
No 296
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.71 E-value=0.021 Score=51.00 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=18.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 297
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.70 E-value=0.071 Score=50.40 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=51.5
Q ss_pred EEEEccCCccHHHHHHHHHccCCCC--CceeeEEEEEcCCCC-CHHHHHHHHHHHhCCCCCcc--ccchhh--H----HH
Q 038944 182 VVILDSIGLDKAAFAGEAYNSSYVK--HYFDCHAWVPGTYPY-DADQMLDIVIKFLMPSSRLS--EIMDKN--Y----EM 250 (334)
Q Consensus 182 i~IvG~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~-~~~~il~~il~~~~~~~~~~--~~~~~~--~----~~ 250 (334)
++|.|..|+|||+|+..+.+..... .+=-.++++-+.+.. .+.++..++.+.-..+.... ...+.. . -.
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 6788999999999999998864431 111156677777654 45566666554310100000 001100 0 01
Q ss_pred HHHHHHHHc---CCCeEEEEEeCCC
Q 038944 251 KKIILHEYL---MTKRYLNVIDDVW 272 (334)
Q Consensus 251 l~~~l~~~L---~~kr~LlVlDdvw 272 (334)
..-.+-+++ +|+..|+++||+-
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChH
Confidence 223344554 4899999999994
No 298
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.67 E-value=0.16 Score=45.71 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHH
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKF 233 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~ 233 (334)
..-.++.|.|.+|+|||||+..+..+..... ..++|++.- .+...+...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3446899999999999999988875422222 456666543 5667777776654
No 299
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.66 E-value=0.064 Score=48.88 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+.+-+.....+..+++|+|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333334578999999999999999998853
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.65 E-value=0.036 Score=43.97 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 301
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.62 E-value=0.037 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999873
No 302
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.61 E-value=0.038 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998764
No 303
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.61 E-value=0.041 Score=49.13 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...++|+|+|-||+||||+|-.+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999987754
No 304
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.59 E-value=0.066 Score=51.54 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988873
No 305
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.56 E-value=0.062 Score=43.12 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 306
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.56 E-value=0.044 Score=48.96 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+++++|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998864
No 307
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.55 E-value=0.036 Score=49.43 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|.|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 308
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.53 E-value=0.063 Score=44.50 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=24.4
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+++.+.-.... .-|.++|.+|+|||||...+.+.
T Consensus 15 ~l~~~~~~~~~-~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKT-GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCC-EEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCC-cEEEEECCCCCCHHHHHHHHhcC
Confidence 44555333333 45789999999999999998753
No 309
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.53 E-value=0.052 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999988764
No 310
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.52 E-value=0.042 Score=43.41 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-|.++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 311
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.50 E-value=0.043 Score=49.43 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999976
No 312
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.49 E-value=0.04 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.++.|+|.+|+|||||+..+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999988763
No 313
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.47 E-value=0.048 Score=46.89 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 314
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.47 E-value=0.039 Score=45.07 Aligned_cols=23 Identities=13% Similarity=-0.135 Sum_probs=19.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999988875
No 315
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.45 E-value=0.042 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999988874
No 316
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.053 Score=44.36 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998874
No 317
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.41 E-value=0.041 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.39 E-value=0.042 Score=50.59 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 45899999999999999999975
No 319
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.39 E-value=0.057 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.044 Score=43.57 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 321
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.35 E-value=0.064 Score=43.69 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998875
No 322
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.32 E-value=0.047 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6888899999999999987764
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.31 E-value=0.06 Score=44.06 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 324
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.31 E-value=0.05 Score=48.13 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57899999999999999988764
No 325
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.29 E-value=0.046 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.097 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.29 E-value=0.049 Score=44.39 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.7
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+..|+|..|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999864
No 327
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.28 E-value=0.049 Score=43.27 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998765
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.25 E-value=0.046 Score=50.27 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999975
No 329
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.23 E-value=0.05 Score=43.13 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 330
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.17 E-value=0.28 Score=47.41 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCC-HHHHHHHH
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYD-ADQMLDIV 230 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~il~~i 230 (334)
+.++.|..=. .-.-++|.|..|+|||+|++.+.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3555554311 12368999999999999999998742 235778888887764 44555554
No 331
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.17 E-value=0.052 Score=43.67 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557899999999999999888764
No 332
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.16 E-value=0.047 Score=43.32 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.9
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 333
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.16 E-value=0.048 Score=43.01 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.8
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888754
No 334
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.12 E-value=0.059 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
....+++|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999875
No 335
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.12 E-value=0.1 Score=45.85 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHc
Q 038944 166 EELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-+..||....+.-.-+.++|++|+|||++|..+.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 345666655434456799999999999999999987
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.09 E-value=0.063 Score=44.94 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.....|.++|.+|+|||||...+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998875
No 337
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.09 E-value=0.11 Score=45.20 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccC
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSS 203 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~ 203 (334)
++...+.........|.++|.+|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444444455678999999999999999988653
No 338
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.08 E-value=0.05 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999975
No 339
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.06 E-value=0.065 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999998864
No 340
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.05 E-value=0.052 Score=44.21 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999988764
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.05 E-value=0.05 Score=50.03 Aligned_cols=23 Identities=17% Similarity=0.162 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 342
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.01 E-value=0.056 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
No 343
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.00 E-value=0.057 Score=48.53 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 356899999999999999999986
No 344
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.00 E-value=0.057 Score=42.87 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999988764
No 345
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.98 E-value=0.058 Score=43.32 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998764
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.96 E-value=0.071 Score=43.19 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 347
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.95 E-value=0.048 Score=48.84 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=19.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
++| +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 9999999999999999875
No 348
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.94 E-value=0.11 Score=41.72 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998765
No 349
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.94 E-value=0.059 Score=42.71 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999988764
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.93 E-value=0.055 Score=42.80 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=18.7
Q ss_pred EEEEccCCccHHHHHHHHHcc
Q 038944 182 VVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 182 i~IvG~gGvGKTtLa~~v~~~ 202 (334)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999988753
No 351
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.93 E-value=0.12 Score=45.17 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+...+.........|.++|.+|+|||||...+...
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33334444444567899999999999999999865
No 352
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.92 E-value=0.072 Score=43.06 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998864
No 353
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.92 E-value=0.1 Score=44.27 Aligned_cols=52 Identities=6% Similarity=-0.111 Sum_probs=31.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIK 232 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~ 232 (334)
-..|.|-|..|+||||+++.+.+...- ..+++. ...-+......+.+++++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~-~~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQ-LTREPGGTPLAERIRELLL 57 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEE-EEESSCSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcc-cccCCCCCHHHHHHHHHHh
Confidence 368899999999999999999873221 234442 2222222223445666654
No 354
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.92 E-value=0.12 Score=49.47 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=59.8
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHH-HHHHHccCCC----CCcee-eEEEEEcCCCC-CHHHHHHHHHHHhCCCCC
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAF-AGEAYNSSYV----KHYFD-CHAWVPGTYPY-DADQMLDIVIKFLMPSSR 239 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtL-a~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~il~~il~~~~~~~~ 239 (334)
+.++.|..=.. -.-++|+|..|+|||+| ...+.+.... .++-+ .++++-+.+.. .+.++.+++.+.-.....
T Consensus 151 raID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIGR-GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCBT-TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeecccccccc-CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 35666653111 12478999999999999 4566663221 12234 46778888765 455666666542111100
Q ss_pred cc--ccchh----hH--HHHHHHHHHHc--CCCeEEEEEeCCCCh-hHHHHHH
Q 038944 240 LS--EIMDK----NY--EMKKIILHEYL--MTKRYLNVIDDVWNI-EVCDIIR 281 (334)
Q Consensus 240 ~~--~~~~~----~~--~~l~~~l~~~L--~~kr~LlVlDdvw~~-~~w~~l~ 281 (334)
.. ...+. .+ -...-.+-+++ +|+..||++||+-.- ..+..+.
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REis 282 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHH
Confidence 00 00000 00 01122233333 689999999999432 4555544
No 355
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.92 E-value=0.056 Score=43.93 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 356
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.91 E-value=0.059 Score=43.16 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998864
No 357
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.89 E-value=0.04 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
+...|.|.|..|+||||+++.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998877
No 358
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.89 E-value=0.074 Score=42.91 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999988854
No 359
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.89 E-value=0.06 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999777654
No 360
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.89 E-value=0.056 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 35899999999999999999975
No 361
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.85 E-value=0.062 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 362
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.85 E-value=0.057 Score=49.73 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999975
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.85 E-value=0.12 Score=57.43 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=53.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCcc---ccchhhHHHHHH
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLS---EIMDKNYEMKKI 253 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~---~~~~~~~~~l~~ 253 (334)
..-+++-|+|++|+|||+||..+..... .+=..++|+++...++... ++.++...... .....+ ++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E--~~l~ 1495 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGE--QALE 1495 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHH--HHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHH--HHHH
Confidence 3457999999999999999988866322 1112567888888877655 44454322111 011112 4445
Q ss_pred HHHHHc-CCCeEEEEEeCC
Q 038944 254 ILHEYL-MTKRYLNVIDDV 271 (334)
Q Consensus 254 ~l~~~L-~~kr~LlVlDdv 271 (334)
.++... ..+--+||+|.+
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCG
T ss_pred HHHHHHhcCCCCEEEEcCh
Confidence 555443 345669999998
No 364
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.82 E-value=0.058 Score=50.00 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999999975
No 365
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.79 E-value=0.083 Score=44.39 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+..+|+|+||+|+||+|+|..+-+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3567999999999999999998865
No 366
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.78 E-value=0.063 Score=43.49 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.78 E-value=0.059 Score=49.84 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999975
No 368
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.77 E-value=0.065 Score=42.64 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998754
No 369
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.73 E-value=0.065 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999888754
No 370
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.72 E-value=0.039 Score=45.93 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-..++|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988763
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.71 E-value=0.061 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999974
No 372
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.71 E-value=0.055 Score=43.54 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999988764
No 373
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.70 E-value=0.064 Score=44.05 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..|.++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999988864
No 374
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.69 E-value=0.061 Score=44.34 Aligned_cols=24 Identities=4% Similarity=0.129 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 446899999999999999987763
No 375
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.68 E-value=0.066 Score=42.88 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-|.|+|..|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 376
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.64 E-value=0.051 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999985
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.61 E-value=0.069 Score=43.13 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=19.9
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999888754
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.60 E-value=0.069 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 379
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.60 E-value=0.083 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4557899999999999999988764
No 380
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.59 E-value=0.068 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 381
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.58 E-value=0.068 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999988754
No 382
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.58 E-value=0.21 Score=42.29 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.7
Q ss_pred EEEEEccCCccHHHHHHHHHcc
Q 038944 181 VVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-|.|+|.+|+|||+|.....++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999887653
No 383
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.54 E-value=0.071 Score=42.90 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999988764
No 384
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.53 E-value=0.071 Score=42.93 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988864
No 385
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.52 E-value=0.068 Score=45.60 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=29.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIV 230 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~i 230 (334)
-.++.|.|.+|+|||||+..+..... ..=...+|++... ....+...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS--CHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC--CHHHHHHHH
Confidence 45899999999999999877654211 1112456665443 344554443
No 386
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.49 E-value=0.066 Score=43.48 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 387
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.49 E-value=0.53 Score=45.10 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=37.4
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhC
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLM 235 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~ 235 (334)
..-.++.|.|.+|+|||||+..+..+.... +=..++|++. +-+..++...++....
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGLHN 295 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHHHc
Confidence 344688999999999999998887642222 1124566654 4456788877765543
No 388
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.45 E-value=0.054 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.1
Q ss_pred CceEEEEEccCCccHHHHHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
...-|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999884
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.44 E-value=0.046 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999975
No 390
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.44 E-value=0.09 Score=42.93 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|..|+|||||...+.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999998865
No 391
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.42 E-value=0.059 Score=45.35 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 392
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.42 E-value=0.08 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.|.|+.|+||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36899999999999999998875
No 393
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.075 Score=42.69 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.++|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446899999999999999988764
No 394
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.34 E-value=0.071 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.4
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|+|..|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999985
No 395
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.33 E-value=0.076 Score=43.54 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.33 E-value=0.059 Score=49.57 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|+|..|.|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999873
No 397
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.31 E-value=0.083 Score=47.24 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....++|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999764
No 398
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.31 E-value=0.08 Score=43.69 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 399
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.075 Score=43.71 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 400
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.29 E-value=0.087 Score=43.15 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998764
No 401
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.23 E-value=0.074 Score=43.47 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999999875
No 402
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.21 E-value=0.074 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999998865
No 403
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.19 E-value=0.095 Score=45.89 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998864
No 404
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.18 E-value=0.13 Score=48.88 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=52.0
Q ss_pred EEEEEccCCccHHHHHHHHHccCCCCCc--eeeEEEEEcCCCC-CHHHHHHHHHHHhCCCCCcc--ccchhh------HH
Q 038944 181 VVVILDSIGLDKAAFAGEAYNSSYVKHY--FDCHAWVPGTYPY-DADQMLDIVIKFLMPSSRLS--EIMDKN------YE 249 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~il~~il~~~~~~~~~~--~~~~~~------~~ 249 (334)
-++|.|..|+|||+|+..+.++...... =+.++++-+.+.. .+.++..++.+.-..+.... ...+.. --
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 4677899999999999999886443211 1356677777654 45667777665311110000 001110 00
Q ss_pred HHHHHHHHHc---CCCeEEEEEeCC
Q 038944 250 MKKIILHEYL---MTKRYLNVIDDV 271 (334)
Q Consensus 250 ~l~~~l~~~L---~~kr~LlVlDdv 271 (334)
...-.+-+++ +|+..|+++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1223334444 479999999997
No 405
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.18 E-value=0.075 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.-++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 406
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.17 E-value=0.099 Score=44.26 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 407
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.16 E-value=0.08 Score=42.96 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHccC
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSS 203 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~ 203 (334)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998653
No 408
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.16 E-value=0.19 Score=40.73 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999998853
No 409
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.15 E-value=0.091 Score=47.11 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
++...|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999998864
No 410
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.14 E-value=0.084 Score=44.23 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|.|.|+.|+||||+++.+.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.13 E-value=0.084 Score=43.25 Aligned_cols=24 Identities=8% Similarity=0.038 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998875
No 412
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.11 E-value=0.1 Score=43.53 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=20.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999988764
No 413
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.10 E-value=0.08 Score=44.21 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998865
No 414
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.09 E-value=0.08 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999999975
No 415
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.09 E-value=0.086 Score=42.99 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 416
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.079 Score=43.42 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999998763
No 417
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.08 E-value=0.14 Score=51.93 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=38.8
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEccCCccHHHHHHHHHccCCCCCce
Q 038944 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYF 209 (334)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F 209 (334)
..-.++.|.++.++.|.+.+.-. -...+=+-++|++|.|||.||+.+.+ .....|
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f 539 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF 539 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce
Confidence 34456788888888887765421 12334567899999999999999999 444433
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.079 Score=43.35 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999998875
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.07 E-value=0.087 Score=43.03 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 420
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.07 E-value=0.058 Score=55.66 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.2
Q ss_pred CceEEEEEccCCccHHHHHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
.-.+++|+|+.|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 34699999999999999999874
No 421
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.05 E-value=0.16 Score=47.69 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+++|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 356999999999999999998875
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.03 E-value=0.13 Score=44.27 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=32.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVI 231 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il 231 (334)
-..|.|.|..|+||||+++.+.+... ..++.+.....-+......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987321 12355344443333323344455555
No 423
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.00 E-value=0.072 Score=50.08 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEccCCccHHHHHHHHHcc
Q 038944 182 VVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 182 i~IvG~gGvGKTtLa~~v~~~ 202 (334)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999763
No 424
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.99 E-value=0.085 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999988764
No 425
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.99 E-value=0.089 Score=43.03 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.98 E-value=0.085 Score=43.44 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 427
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.082 Score=44.03 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999988754
No 428
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.95 E-value=0.092 Score=42.81 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998754
No 429
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.93 E-value=0.071 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.++.|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 46899999999999999999987
No 430
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.92 E-value=0.092 Score=42.77 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 431
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.91 E-value=0.14 Score=41.70 Aligned_cols=35 Identities=17% Similarity=-0.030 Sum_probs=24.8
Q ss_pred HHHHHhcCC-CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 168 LLDLLIEGP-PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 168 l~~~L~~~~-~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+.++|.--. .+..-|.|+|.+|+|||||...+..+
T Consensus 10 ~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 10 LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp HHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcC
Confidence 445443322 33456899999999999999988653
No 432
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.89 E-value=0.091 Score=43.49 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.89 E-value=0.092 Score=43.30 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=21.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 434
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.88 E-value=0.088 Score=43.56 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 435
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.87 E-value=0.1 Score=50.54 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.++|++|.||||+|+.+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.85 E-value=0.067 Score=43.18 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=20.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...-|.|+|.+|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999998874
No 437
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.80 E-value=0.097 Score=42.40 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 438
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.80 E-value=0.086 Score=43.37 Aligned_cols=24 Identities=4% Similarity=-0.090 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998753
No 439
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.78 E-value=0.092 Score=43.47 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.8
Q ss_pred ceEEEEE-ccCCccHHHHHHHHHc
Q 038944 179 LSVVVIL-DSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~Iv-G~gGvGKTtLa~~v~~ 201 (334)
.++|+|+ +-||+||||+|..+..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 3688888 5689999999988764
No 440
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.76 E-value=0.092 Score=46.98 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHH
Q 038944 165 MEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
+++|.+.+.. .+++++|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 5666666643 488999999999999999998
No 441
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.76 E-value=0.11 Score=44.37 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|+++|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999999874
No 442
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.099 Score=43.46 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-|.|+|.+|+|||||...+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999988864
No 443
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.72 E-value=0.093 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=20.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 444
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.69 E-value=0.14 Score=48.68 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=25.8
Q ss_pred hHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 164 RMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+..+...+..++ ..+.|.|.+|+||||++..+...
T Consensus 33 av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 33 AFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 3344444454433 38999999999999999888763
No 445
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.68 E-value=0.1 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-+.+.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 446
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.67 E-value=0.12 Score=49.88 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=30.2
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 158 TVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-+.+.+-.+.+.+..-...++..+|.+.|+.|+||||+|+.+...
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHH
Confidence 334444444444433222234578999999999999999999884
No 447
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.66 E-value=0.097 Score=44.84 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=18.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.63 E-value=0.099 Score=48.01 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.+++|+|.+|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999874
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.60 E-value=0.12 Score=42.90 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=20.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999888764
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.58 E-value=0.087 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.8
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-|.|+|..|+|||||...+.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.078 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||++.+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 452
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.51 E-value=0.1 Score=42.65 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998864
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.46 E-value=0.11 Score=43.11 Aligned_cols=24 Identities=8% Similarity=0.254 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 454
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.44 E-value=0.11 Score=43.04 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 457899999999999999988764
No 455
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.42 E-value=0.11 Score=42.90 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.-|.|+|.+|+|||||...+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998764
No 456
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.39 E-value=0.11 Score=43.17 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888754
No 457
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.34 E-value=0.15 Score=43.14 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=32.8
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHH
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIK 232 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~ 232 (334)
..|.+-|..|+||||+++.+.+.-.- ..+....+..-+......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874221 22322333333333345566666665
No 458
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.34 E-value=0.27 Score=47.68 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCC-CHHHHHHH
Q 038944 167 ELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPY-DADQMLDI 229 (334)
Q Consensus 167 ~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~il~~ 229 (334)
+.++.|..=. .-.-++|.|..|+|||+|+..+.+.. +-+.++++-+.+.. .+.+++.+
T Consensus 221 rvID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4566665421 12368999999999999999998853 23567788787663 34444444
No 459
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.32 E-value=0.099 Score=46.64 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..+..|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45778999999999999999999764
No 460
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.29 E-value=0.089 Score=44.13 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=22.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHccC
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSS 203 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~ 203 (334)
....|.|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.28 E-value=0.11 Score=50.58 Aligned_cols=127 Identities=14% Similarity=0.200 Sum_probs=63.1
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCC--CC-cee-eEEEEEcCC----CCCHHHHHHHH--------------HHHhCCC
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYV--KH-YFD-CHAWVPGTY----PYDADQMLDIV--------------IKFLMPS 237 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~--~~-~F~-~~~wv~vs~----~~~~~~il~~i--------------l~~~~~~ 237 (334)
.+++|+|..|.|||||++.++.-..- .. .+. ...+|.-.. ..++..++... ++.++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 58999999999999999999873211 11 112 133432211 12344433222 1111111
Q ss_pred CCc---cccchhhHHHHHHHHHHHcCCCeEEEEEeCCCCh---hHHHHHHhhCCC--CCCCeEEEEecCChHHHhhcc
Q 038944 238 SRL---SEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWNI---EVCDIIREILPD--NQNRSRVLITLTEIKMFTFLL 307 (334)
Q Consensus 238 ~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---~~w~~l~~~l~~--~~~gsrIivTTr~~~va~~~~ 307 (334)
... ....+-. +.-.-.|-..|..+.-+|+||.--+. ..-..+...+.. ...|.-||++|.+.+.+..++
T Consensus 393 ~~~~~~~~~LSGG-e~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 393 DLYDREVNELSGG-ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp GGTTSBGGGCCHH-HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred hhhcCChhhCCHH-HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 000 0111111 12233445556667778999998543 222222222211 122555888888877766544
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.25 E-value=0.1 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|+|||||++.++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 463
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=91.24 E-value=1.3 Score=39.86 Aligned_cols=103 Identities=10% Similarity=-0.061 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCccccchhh
Q 038944 168 LLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLSEIMDKN 247 (334)
Q Consensus 168 l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~~~~~~~ 247 (334)
+.+.|. + .-.++.-++|..|.||++.+..+.+... ...|+....+.+....+..
T Consensus 9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------------------- 62 (343)
T 1jr3_D 9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWN----------------------- 62 (343)
T ss_dssp HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHH-----------------------
T ss_pred HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHH-----------------------
Confidence 444444 2 3456888999999999999888866211 1123221222233333333
Q ss_pred HHHHHHHHHHH-cCCCeEEEEEeCCC---ChhHHHHHHhhCCCCCCCeEEEEecC
Q 038944 248 YEMKKIILHEY-LMTKRYLNVIDDVW---NIEVCDIIREILPDNQNRSRVLITLT 298 (334)
Q Consensus 248 ~~~l~~~l~~~-L~~kr~LlVlDdvw---~~~~w~~l~~~l~~~~~gsrIivTTr 298 (334)
++.+.+... +-+++-++|+|++. +...++.+...+..-..++.+|++|.
T Consensus 63 --~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 63 --AIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp --HHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred --HHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 333222221 34566788889884 45788888877765556787777654
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.21 E-value=0.11 Score=43.72 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999988864
No 465
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.18 E-value=0.099 Score=49.09 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEccCCccHHHHHHHHHcc
Q 038944 182 VVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 182 i~IvG~gGvGKTtLa~~v~~~ 202 (334)
|+|+|..|+|||||.+.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999864
No 466
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.14 E-value=0.064 Score=52.80 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=29.8
Q ss_pred CeeechhhHHHHHHHHhcCCC---------CceEEEEEccCCccHHHHHHHHHc
Q 038944 157 DTVGLDDRMEELLDLLIEGPP---------QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~---------~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.++|.+..+..+.-.|..+.. .-.-+-++|.+|+|||+||+.+.+
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 466776655555444433310 001478899999999999999887
No 467
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.10 E-value=0.086 Score=43.03 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHccC
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNSS 203 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~~ 203 (334)
..-|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987653
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.09 E-value=0.11 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999985
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.08 E-value=0.11 Score=50.35 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999986
No 470
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.06 E-value=0.13 Score=48.97 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
..+|.++|++|+||||+++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999876
No 471
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.06 E-value=0.28 Score=41.18 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=31.2
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHH
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIK 232 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~ 232 (334)
+.|+|=|..|+||||+++.+.+. ....+++. ...-+......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v~-~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDVI-MTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCEE-EEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCEE-EeeCCCCChHHHHHHHHHh
Confidence 46888899999999999999884 33334432 2222223334455555554
No 472
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.05 E-value=0.27 Score=43.29 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCccHHHHHHHHHccC
Q 038944 177 PQLSVVVILDSIGLDKAAFAGEAYNSS 203 (334)
Q Consensus 177 ~~~~vi~IvG~gGvGKTtLa~~v~~~~ 203 (334)
.....|+|+|.+|+|||||...+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999998753
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.02 E-value=0.16 Score=42.61 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 474
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.02 E-value=0.12 Score=48.93 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
-.+++|+|..|+|||||.+.+.+-
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999884
No 475
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.01 E-value=0.16 Score=43.36 Aligned_cols=56 Identities=4% Similarity=-0.241 Sum_probs=33.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHH
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKF 233 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~ 233 (334)
....|.|.|..|+||||+++.+.+.......+++.....-+......+.+++++..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFK 75 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhC
Confidence 45789999999999999999998732110123333312223332344556666653
No 476
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.00 E-value=0.15 Score=44.11 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998754
No 477
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.99 E-value=0.07 Score=43.13 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=10.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999888754
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.98 E-value=0.066 Score=54.67 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
..-.+++|.++.++.|.+.+... -.....+.++|++|+||||||+.+.+.
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 44456789998888888776521 023456889999999999999999984
No 479
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.94 E-value=0.13 Score=47.42 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+.++++|+|.+|+|||||...+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999874
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.94 E-value=0.12 Score=49.32 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999874
No 481
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.92 E-value=0.12 Score=46.08 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 165 MEELLDLLIEGPPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
++++..++.. .+++++|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 5666666643 48999999999999999999863
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.92 E-value=0.13 Score=43.97 Aligned_cols=107 Identities=14% Similarity=0.054 Sum_probs=53.0
Q ss_pred EEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCc-----cccchhhHHHHHHHH
Q 038944 181 VVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRL-----SEIMDKNYEMKKIIL 255 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~-----~~~~~~~~~~l~~~l 255 (334)
.|.+.|.||+||||+|-.+..... ..-++.. .+.+...-+... . ..+..+...... .....+. .+...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V~-v~d~D~q~~~~~-~-al~~gl~~~~~~~~~~~~~~~~e~--~l~~~L 81 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVRVM-AGVVETHGRAET-E-ALLNGLPQQPLLRTEYRGMTLEEM--DLDALL 81 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCCEE-EEECCCTTCHHH-H-HHHTTSCBCCCEEEEETTEEEEEC--CHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCCEE-EEEeCCCCChhH-H-HHhcCccccCcceeecCCcccccc--cHHHHH
Confidence 477889999999999877765311 1223333 333333222221 1 112222211000 0011111 222222
Q ss_pred HHHcCCCeEEEEEeCCCCh--------hHHHHHHhhCCCCCCCeEEEEecCCh
Q 038944 256 HEYLMTKRYLNVIDDVWNI--------EVCDIIREILPDNQNRSRVLITLTEI 300 (334)
Q Consensus 256 ~~~L~~kr~LlVlDdvw~~--------~~w~~l~~~l~~~~~gsrIivTTr~~ 300 (334)
. .+.=++|+|++=.. ..|.++...++. |-.|+.|+..+
T Consensus 82 ~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 82 K----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp H----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred h----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 2 23448999986532 378888776543 55588887754
No 483
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.90 E-value=0.16 Score=40.28 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=19.5
Q ss_pred ceEEEEEccCCccHHHHHHHHH
Q 038944 179 LSVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~ 200 (334)
..+..|+|..|.||||+...++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3588999999999999998876
No 484
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.87 E-value=0.24 Score=46.61 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=32.0
Q ss_pred echhhHHHHHHHHhcC---------CCCceEEEEEccCCccHHHHHHHHHcc
Q 038944 160 GLDDRMEELLDLLIEG---------PPQLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 160 Gr~~~~~~l~~~L~~~---------~~~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
|.++-.+.+.+.+... ......++|+|.+|+|||||.+.+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 5666667776666521 123468999999999999999999864
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.85 E-value=0.14 Score=42.29 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=17.4
Q ss_pred eEEEEEccCCccHHHHHHHHH
Q 038944 180 SVVVILDSIGLDKAAFAGEAY 200 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~ 200 (334)
.++.|+|..|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999984444
No 486
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.79 E-value=0.13 Score=50.83 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=64.6
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCC--CCc-ee-eEEEEEcCC----CCCHHHHH--------------HHHHHHhCCC
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYV--KHY-FD-CHAWVPGTY----PYDADQML--------------DIVIKFLMPS 237 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~--~~~-F~-~~~wv~vs~----~~~~~~il--------------~~il~~~~~~ 237 (334)
.+++|+|..|+|||||.+.+..-..- ..- +. ...++.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 48999999999999999999863211 111 11 233442211 12333332 2334444432
Q ss_pred CCc---cccchhhHHHHHHHHHHHcCCCeEEEEEeCCCCh---h----HHHHHHhhCCCCCCCeEEEEecCChHHHhhcc
Q 038944 238 SRL---SEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWNI---E----VCDIIREILPDNQNRSRVLITLTEIKMFTFLL 307 (334)
Q Consensus 238 ~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---~----~w~~l~~~l~~~~~gsrIivTTr~~~va~~~~ 307 (334)
... ....+.. +.-.-.|-..|..+.-+++||.--+. . .++.|.. +.. ..|.-||++|.+.+.+..++
T Consensus 463 ~~~~~~~~~LSGG-e~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-l~~-~~g~tvi~vsHd~~~~~~~a 539 (607)
T 3bk7_A 463 DLYDRNVEDLSGG-ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH-LME-KNEKTALVVEHDVLMIDYVS 539 (607)
T ss_dssp TTTTSBGGGCCHH-HHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH-HHH-HTTCEEEEECSCHHHHHHHC
T ss_pred hHhcCChhhCCHH-HHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHH-HHH-hCCCEEEEEeCCHHHHHHhC
Confidence 211 0122211 12223444556666778999997543 2 2222222 211 23555888888887776544
No 487
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.76 E-value=0.16 Score=43.37 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=19.7
Q ss_pred CceEEEEEc-cCCccHHHHHHHHHc
Q 038944 178 QLSVVVILD-SIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG-~gGvGKTtLa~~v~~ 201 (334)
..++|+|+| -||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 467899985 589999999988865
No 488
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.74 E-value=0.14 Score=44.62 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999864
No 489
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.66 E-value=0.072 Score=47.87 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+++|+|.+|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999999976
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.64 E-value=0.13 Score=50.66 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=63.6
Q ss_pred eEEEEEccCCccHHHHHHHHHccCCC--CCcee--eEEEEEcC--CCC--CHH--------------HHHHHHHHHhCCC
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSSYV--KHYFD--CHAWVPGT--YPY--DAD--------------QMLDIVIKFLMPS 237 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~~~--~~~F~--~~~wv~vs--~~~--~~~--------------~il~~il~~~~~~ 237 (334)
.+++|+|..|+|||||++.+..-..- ..... ...++.-. ..+ ++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 57999999999999999999863211 11010 11222111 011 122 2223344444432
Q ss_pred CCc---cccchhhHHHHHHHHHHHcCCCeEEEEEeCCCCh---h----HHHHHHhhCCCCCCCeEEEEecCChHHHhhcc
Q 038944 238 SRL---SEIMDKNYEMKKIILHEYLMTKRYLNVIDDVWNI---E----VCDIIREILPDNQNRSRVLITLTEIKMFTFLL 307 (334)
Q Consensus 238 ~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---~----~w~~l~~~l~~~~~gsrIivTTr~~~va~~~~ 307 (334)
... +...+-. +.-.-.|-..|..+.=+|+||.--.. . .++.|.... . ..|.-||++|.+.+.+..++
T Consensus 459 ~~~~~~~~~LSGG-qkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~-~-~~g~tviivtHdl~~~~~~a 535 (608)
T 3j16_B 459 DIIDQEVQHLSGG-ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI-L-HNKKTAFIVEHDFIMATYLA 535 (608)
T ss_dssp TTSSSBSSSCCHH-HHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHH-H-HHTCEEEEECSCHHHHHHHC
T ss_pred hhhcCChhhCCHH-HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H-hCCCEEEEEeCCHHHHHHhC
Confidence 211 0122212 12233455667777788999997543 1 222222221 1 23556888888888776543
No 491
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.63 E-value=0.17 Score=45.25 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHcc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998764
No 492
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.54 E-value=0.12 Score=45.34 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=19.9
Q ss_pred eEEEEEccCCccHHHHHHHHHcc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999988754
No 493
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.48 E-value=0.12 Score=44.20 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.8
Q ss_pred EEEEEccCCccHHHHHHHHHc
Q 038944 181 VVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 181 vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.|+|.|-||+||||+|..+..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 367789999999999988865
No 494
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.44 E-value=0.16 Score=49.62 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHc
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
...+|.|.|++|+||||+|+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 495
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.43 E-value=0.14 Score=50.45 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
-.+++|+|..|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45999999999999999999975
No 496
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.42 E-value=0.33 Score=44.11 Aligned_cols=53 Identities=17% Similarity=0.011 Sum_probs=36.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHccCCCCCceeeEEEEEcCCCCCHHHHHHHHHHHh
Q 038944 178 QLSVVVILDSIGLDKAAFAGEAYNSSYVKHYFDCHAWVPGTYPYDADQMLDIVIKFL 234 (334)
Q Consensus 178 ~~~vi~IvG~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~il~~il~~~ 234 (334)
.-.++.|.|.+|+||||||..+..+... +=..++|++ -+-+...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fS--lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFS--LEMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEE--SSSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe--CCCCHHHHHHHHHHHh
Confidence 3458899999999999999888764221 112445554 4567788888876553
No 497
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.39 E-value=0.17 Score=43.74 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHc
Q 038944 180 SVVVILDSIGLDKAAFAGEAYN 201 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~ 201 (334)
.+|+|.|+.|+||||+|+.+-.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 498
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.39 E-value=0.39 Score=55.04 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=58.1
Q ss_pred eEEEEEccCCccHHHHHHHHHccC-CCCCceeeEEEEEcCCCCCHHHHHHHHHHHhCCCCCccccchhhHHHHHHHHHHH
Q 038944 180 SVVVILDSIGLDKAAFAGEAYNSS-YVKHYFDCHAWVPGTYPYDADQMLDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 258 (334)
Q Consensus 180 ~vi~IvG~gGvGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~il~~il~~~~~~~~~~~~~~~~~~~l~~~l~~~ 258 (334)
.-+-+||.+|.||||+.+.+.+-. ++.. ......+--++..+..+++ ..+.... ..+.+. -+...+++.
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~al~~l~~-~~~~~~~inpk~~t~~el~----G~~d~~t---~eW~DG--ils~~~R~~ 993 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDAMAIFDG-HANVVYVIDTKVLTKESLY----GSMLKAT---LEWRDG--LFTSILRRV 993 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEEEECTTTSCHHHHT----TEECTTT---CCEECC--SHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcC-CCceEEEeCCCCCCHHHhc----ceecCCC---CeEecC--hHHHHHHHH
Confidence 457899999999999998887521 1111 1233344344555654433 2222221 345555 666666665
Q ss_pred cCC-------CeEEEEEeCCCChhHHHHHHhhCCCC
Q 038944 259 LMT-------KRYLNVIDDVWNIEVCDIIREILPDN 287 (334)
Q Consensus 259 L~~-------kr~LlVlDdvw~~~~w~~l~~~l~~~ 287 (334)
..+ .+.-||||+.=+....+.+...|.++
T Consensus 994 ~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDN 1029 (2695)
T 4akg_A 994 NDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDN 1029 (2695)
T ss_dssp HTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTT
T ss_pred HhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCC
Confidence 432 27789999887776666666666544
No 499
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.37 E-value=0.16 Score=44.19 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=20.4
Q ss_pred CCceEEEEEc-cCCccHHHHHHHHHcc
Q 038944 177 PQLSVVVILD-SIGLDKAAFAGEAYNS 202 (334)
Q Consensus 177 ~~~~vi~IvG-~gGvGKTtLa~~v~~~ 202 (334)
...++|+|+| -||+||||+|..+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~ 51 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATL 51 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHH
Confidence 3578999975 6889999999888653
No 500
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.34 E-value=0.22 Score=43.77 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHcc
Q 038944 179 LSVVVILDSIGLDKAAFAGEAYNS 202 (334)
Q Consensus 179 ~~vi~IvG~gGvGKTtLa~~v~~~ 202 (334)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999864
Done!