Query 038945
Match_columns 363
No_of_seqs 124 out of 1998
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 1.2E-19 2.7E-24 193.5 17.1 267 37-339 622-903 (1153)
2 PLN03210 Resistant to P. syrin 99.7 7.7E-17 1.7E-21 172.2 16.7 261 40-339 603-879 (1153)
3 PLN00113 leucine-rich repeat r 99.7 5.7E-17 1.2E-21 171.7 12.5 286 7-339 88-390 (968)
4 KOG0444 Cytoskeletal regulator 99.7 3.5E-18 7.6E-23 161.7 -2.2 290 35-340 41-373 (1255)
5 PLN00113 leucine-rich repeat r 99.7 5E-16 1.1E-20 164.6 13.0 289 9-339 137-438 (968)
6 KOG4194 Membrane glycoprotein 99.5 3.1E-14 6.6E-19 134.3 3.9 134 193-339 289-426 (873)
7 KOG4341 F-box protein containi 99.5 3.7E-15 8.1E-20 135.3 -2.7 282 50-358 139-446 (483)
8 KOG4194 Membrane glycoprotein 99.3 3.8E-13 8.2E-18 127.0 2.1 271 49-349 173-460 (873)
9 KOG4341 F-box protein containi 99.3 2.2E-13 4.8E-18 124.0 -3.5 240 77-339 138-411 (483)
10 PRK15387 E3 ubiquitin-protein 99.2 2.2E-10 4.7E-15 115.9 11.9 114 197-339 342-455 (788)
11 KOG4658 Apoptotic ATPase [Sign 99.1 3.4E-11 7.4E-16 123.9 5.1 313 7-354 540-880 (889)
12 KOG0444 Cytoskeletal regulator 99.1 3E-12 6.6E-17 122.0 -4.0 216 37-319 161-376 (1255)
13 PRK15370 E3 ubiquitin-protein 99.1 3.9E-10 8.4E-15 114.4 8.8 117 198-339 305-425 (754)
14 KOG0472 Leucine-rich repeat pr 99.0 6.7E-11 1.4E-15 107.5 0.8 118 207-339 421-538 (565)
15 KOG0472 Leucine-rich repeat pr 99.0 2.8E-12 6E-17 116.3 -8.2 126 196-339 182-307 (565)
16 PRK15370 E3 ubiquitin-protein 99.0 1.8E-09 3.8E-14 109.7 9.3 200 49-339 199-398 (754)
17 KOG0618 Serine/threonine phosp 99.0 3.8E-11 8.2E-16 119.1 -3.1 79 49-146 241-319 (1081)
18 PRK15387 E3 ubiquitin-protein 98.9 1.9E-08 4E-13 102.0 14.4 110 198-339 323-432 (788)
19 cd00116 LRR_RI Leucine-rich re 98.8 1.5E-09 3.2E-14 100.5 2.0 16 99-114 77-92 (319)
20 KOG0618 Serine/threonine phosp 98.7 7.2E-10 1.6E-14 110.2 -3.0 248 12-318 241-489 (1081)
21 cd00116 LRR_RI Leucine-rich re 98.7 4.3E-09 9.4E-14 97.3 1.7 275 9-339 20-317 (319)
22 KOG2120 SCF ubiquitin ligase, 98.7 4.9E-10 1.1E-14 98.3 -5.9 185 50-289 186-373 (419)
23 KOG4658 Apoptotic ATPase [Sign 98.6 2.5E-08 5.3E-13 103.1 4.7 90 48-153 544-634 (889)
24 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.3E-13 93.3 0.6 214 47-312 119-333 (505)
25 KOG0617 Ras suppressor protein 98.5 8.2E-09 1.8E-13 83.9 -3.1 135 190-339 49-183 (264)
26 KOG2120 SCF ubiquitin ligase, 98.4 5.8E-08 1.2E-12 85.5 1.3 155 196-363 209-385 (419)
27 KOG0617 Ras suppressor protein 98.4 9.3E-09 2E-13 83.5 -4.4 146 37-239 44-190 (264)
28 KOG4237 Extracellular matrix p 98.3 1.6E-07 3.4E-12 85.8 0.3 100 241-351 268-369 (498)
29 KOG1947 Leucine rich repeat pr 98.3 2.1E-07 4.5E-12 91.0 0.5 114 45-172 210-324 (482)
30 KOG3207 Beta-tubulin folding c 98.3 4.6E-07 1E-11 83.7 2.6 115 9-148 143-257 (505)
31 KOG1947 Leucine rich repeat pr 98.2 6E-07 1.3E-11 87.7 1.7 72 75-152 186-258 (482)
32 PRK15386 type III secretion pr 98.0 2.9E-05 6.2E-10 73.0 8.4 136 99-315 48-187 (426)
33 KOG4237 Extracellular matrix p 97.9 1E-06 2.2E-11 80.6 -2.1 85 217-313 270-354 (498)
34 PF13855 LRR_8: Leucine rich r 97.9 2E-05 4.4E-10 53.8 4.4 60 49-114 1-60 (61)
35 PF14580 LRR_9: Leucine-rich r 97.8 4.3E-05 9.2E-10 64.0 5.9 85 47-148 40-124 (175)
36 PRK15386 type III secretion pr 97.8 3E-05 6.5E-10 72.9 5.4 133 193-339 48-187 (426)
37 PF14580 LRR_9: Leucine-rich r 97.7 2.4E-05 5.2E-10 65.5 3.4 129 195-339 17-150 (175)
38 PF13855 LRR_8: Leucine rich r 97.7 5.6E-05 1.2E-09 51.6 4.4 58 279-339 1-59 (61)
39 KOG1259 Nischarin, modulator o 97.5 7.5E-05 1.6E-09 66.4 2.8 105 196-316 306-410 (490)
40 KOG1259 Nischarin, modulator o 97.3 0.00028 6E-09 62.8 4.6 142 196-361 283-426 (490)
41 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 74.6 1.8 62 49-113 122-183 (699)
42 KOG0532 Leucine-rich repeat (L 97.2 3.6E-05 7.9E-10 73.8 -2.7 184 37-257 86-270 (722)
43 COG4886 Leucine-rich repeat (L 97.0 0.00062 1.4E-08 65.0 4.3 83 46-147 113-196 (394)
44 COG4886 Leucine-rich repeat (L 97.0 0.00067 1.4E-08 64.8 4.0 94 36-148 126-220 (394)
45 KOG0532 Leucine-rich repeat (L 96.9 0.00018 3.9E-09 69.2 -1.0 131 190-339 114-244 (722)
46 KOG1909 Ran GTPase-activating 96.7 0.00014 3.1E-09 65.8 -2.9 61 197-258 185-252 (382)
47 PF12799 LRR_4: Leucine Rich r 96.7 0.0026 5.5E-08 40.1 3.5 33 78-113 2-34 (44)
48 KOG3665 ZYG-1-like serine/thre 96.6 0.0015 3.2E-08 66.5 3.5 59 47-112 171-229 (699)
49 PF12799 LRR_4: Leucine Rich r 96.6 0.0042 9.1E-08 39.2 4.3 39 49-93 1-39 (44)
50 PLN03150 hypothetical protein; 96.6 0.0032 7E-08 63.8 5.8 97 40-152 433-530 (623)
51 PLN03150 hypothetical protein; 96.6 0.0035 7.5E-08 63.5 6.0 81 199-289 420-500 (623)
52 KOG1909 Ran GTPase-activating 96.6 0.00083 1.8E-08 61.0 0.9 235 3-290 49-309 (382)
53 KOG3864 Uncharacterized conser 96.3 0.00053 1.2E-08 57.6 -1.4 61 278-338 124-185 (221)
54 KOG2982 Uncharacterized conser 96.1 0.002 4.2E-08 57.5 1.0 37 75-112 69-106 (418)
55 KOG2123 Uncharacterized conser 96.1 0.00024 5.3E-09 62.5 -5.0 84 48-150 18-101 (388)
56 KOG3864 Uncharacterized conser 95.9 0.00096 2.1E-08 56.1 -1.9 17 220-236 150-166 (221)
57 KOG2123 Uncharacterized conser 94.6 0.0025 5.5E-08 56.3 -3.5 103 196-311 18-123 (388)
58 KOG1644 U2-associated snRNP A' 94.3 0.091 2E-06 44.5 5.1 86 48-147 63-150 (233)
59 KOG2982 Uncharacterized conser 92.2 0.073 1.6E-06 47.8 1.5 64 193-258 93-157 (418)
60 KOG1644 U2-associated snRNP A' 91.5 0.2 4.3E-06 42.6 3.3 64 48-114 87-151 (233)
61 KOG2739 Leucine-rich acidic nu 91.3 0.16 3.4E-06 44.8 2.5 88 48-148 64-154 (260)
62 KOG1859 Leucine-rich repeat pr 91.0 0.02 4.2E-07 57.3 -3.6 62 44-114 204-265 (1096)
63 PF13504 LRR_7: Leucine rich r 90.2 0.22 4.8E-06 24.2 1.5 15 306-321 2-16 (17)
64 KOG0531 Protein phosphatase 1, 90.1 0.2 4.3E-06 48.3 2.4 82 45-147 91-172 (414)
65 PF00560 LRR_1: Leucine Rich R 90.0 0.24 5.2E-06 25.9 1.6 20 306-326 1-20 (22)
66 KOG1859 Leucine-rich repeat pr 89.4 0.063 1.4E-06 53.8 -1.6 135 197-339 84-242 (1096)
67 KOG0531 Protein phosphatase 1, 89.3 0.21 4.5E-06 48.1 1.9 92 36-147 105-196 (414)
68 PF13306 LRR_5: Leucine rich r 88.5 1.3 2.8E-05 34.5 5.7 82 8-112 8-90 (129)
69 KOG4579 Leucine-rich repeat (L 88.3 0.091 2E-06 41.8 -1.1 68 37-112 64-132 (177)
70 smart00367 LRR_CC Leucine-rich 87.0 0.4 8.6E-06 26.1 1.3 18 304-321 1-18 (26)
71 KOG2739 Leucine-rich acidic nu 86.3 0.52 1.1E-05 41.5 2.3 62 196-258 64-127 (260)
72 PF13306 LRR_5: Leucine rich r 85.3 5 0.00011 31.1 7.5 57 194-255 9-66 (129)
73 KOG4579 Leucine-rich repeat (L 81.7 0.3 6.6E-06 39.0 -0.9 105 222-339 28-133 (177)
74 smart00370 LRR Leucine-rich re 62.7 5.2 0.00011 21.4 1.3 17 49-66 2-18 (26)
75 smart00369 LRR_TYP Leucine-ric 62.7 5.2 0.00011 21.4 1.3 17 49-66 2-18 (26)
76 PF13516 LRR_6: Leucine Rich r 57.5 5.6 0.00012 20.9 0.9 11 77-87 2-12 (24)
77 smart00364 LRR_BAC Leucine-ric 33.3 26 0.00057 19.2 1.1 17 49-66 2-18 (26)
78 COG5238 RNA1 Ran GTPase-activa 29.3 14 0.00031 33.2 -0.6 72 42-114 51-131 (388)
79 KOG3763 mRNA export factor TAP 26.4 19 0.00041 35.5 -0.4 69 47-118 216-285 (585)
80 smart00368 LRR_RI Leucine rich 26.3 45 0.00097 18.3 1.3 12 49-60 2-13 (28)
81 KOG3763 mRNA export factor TAP 23.9 66 0.0014 31.9 2.7 61 47-110 242-308 (585)
82 COG5238 RNA1 Ran GTPase-activa 22.9 37 0.0008 30.7 0.7 52 41-95 84-137 (388)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.2e-19 Score=193.47 Aligned_cols=267 Identities=24% Similarity=0.330 Sum_probs=188.1
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+.++|.....+++|+.|+++++..++.+|.. ..+++|+.|++.+|..+.. .|.. ++.+++|+.|++++|..+
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l-----s~l~~Le~L~L~~c~~L~~-lp~s-i~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL-----SMATNLETLKLSDCSSLVE-LPSS-IQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCcc-----ccCCcccEEEecCCCCccc-cchh-hhccCCCCEEeCCCCCCc
Confidence 45667777778899999999988878876642 3689999999999988775 5544 888999999999999888
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh------hccccch--hhHH-HHHHhhh--hh
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE------CNFIRIK--SNLM-TRLFALQ--HL 185 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~------~~~~~l~--~~L~-l~~~~~~--~l 185 (363)
+.++.. ..+++|+.|++++|..++.++.... .|+.+. ..+|... ++|. +.+..+. .+
T Consensus 695 ~~Lp~~-----------i~l~sL~~L~Lsgc~~L~~~p~~~~-nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 695 EILPTG-----------INLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CccCCc-----------CCCCCCCEEeCCCCCCccccccccC-CcCeeecCCCccccccccccccccccccccccchhhc
Confidence 877631 1578899999999987776643321 333332 1111100 0111 1111100 00
Q ss_pred hhh----cccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchh
Q 038945 186 LKE----NAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMME 261 (363)
Q Consensus 186 ~~~----~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 261 (363)
... .......+++|+.|++++|+.+..+|..+..+++|+.|++++|..++.+|.. . .+++|+.|++++|..+.
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--I-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--C-CccccCEEECCCCCccc
Confidence 000 0001123468999999999988888888889999999999999999988754 2 68999999999998876
Q ss_pred hhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 262 EIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.++. ..++|+.|++.++ .++.++.. ...+++|+.|++.+|++++.+|..+..+++|+.++++++
T Consensus 840 ~~p~-----------~~~nL~~L~Ls~n-~i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 840 TFPD-----------ISTNISDLNLSRT-GIEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccc-----------cccccCEeECCCC-CCccChHH--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 5432 1357888888773 66666655 666788888888888888888887778888888888776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=7.7e-17 Score=172.16 Aligned_cols=261 Identities=20% Similarity=0.244 Sum_probs=173.0
Q ss_pred hhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCccee
Q 038945 40 KCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV 119 (363)
Q Consensus 40 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~ 119 (363)
.+|..+ .+.+|++|+++++. ++.+|.+. ..+++|+.|++++|.++.. .|. +..+++|+.|++.+|..+..+
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~-ip~--ls~l~~Le~L~L~~c~~L~~l 673 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKE-IPD--LSMATNLETLKLSDCSSLVEL 673 (1153)
T ss_pred CCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCc-CCc--cccCCcccEEEecCCCCcccc
Confidence 344443 35789999999986 88888777 6899999999999877765 443 788999999999999988776
Q ss_pred cccccccccccccCCCCCccceeecccccccccccCccc-chhhhhh-hccccch------hhHH-HHHHhhhhhhhhcc
Q 038945 120 LHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTG-NIIELLE-CNFIRIK------SNLM-TRLFALQHLLKENA 190 (363)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~-~~L~~l~-~~~~~l~------~~L~-l~~~~~~~l~~~~~ 190 (363)
+.. ...+++|+.|++++|.+++.++.... ..|..+. ..|..+. ++|. +.+ ....+ ...
T Consensus 674 p~s----------i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L-~~n~i--~~l 740 (1153)
T PLN03210 674 PSS----------IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL-DETAI--EEF 740 (1153)
T ss_pred chh----------hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec-CCCcc--ccc
Confidence 532 23688999999999998888765331 1233332 3333222 1111 000 00011 111
Q ss_pred cccccCCCccEEEeccCcCcc------cc-cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhh
Q 038945 191 ESNKVFANLKSLEISECSQLQ------KL-VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEI 263 (363)
Q Consensus 191 ~~l~~l~~L~~L~l~~c~~l~------~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 263 (363)
+....+++|++|.+.++.... .+ +.....+++|+.|++++|+.+..+|.. ++++++|+.|++++|..++.+
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCee
Confidence 111234555555555432110 00 001123467888888888877777654 678888999999888877765
Q ss_pred hccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 264 IQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 264 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+.. ..+++|+.|++++|..+..++.. .++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus 819 P~~---------~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 819 PTG---------INLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCC---------CCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCC
Confidence 432 25788889999988888776543 467888888654 77888888889999999999875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=5.7e-17 Score=171.71 Aligned_cols=286 Identities=16% Similarity=0.115 Sum_probs=129.5
Q ss_pred ccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccc-cccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945 7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMI-GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD 85 (363)
Q Consensus 7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 85 (363)
.+..+|+|+.|+++. ..+. ..+|..+. .+++|++|+++++. +.. . .+.+.+++|++|+++
T Consensus 88 ~~~~l~~L~~L~Ls~----------n~~~---~~ip~~~~~~l~~L~~L~Ls~n~-l~~----~-~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 88 AIFRLPYIQTINLSN----------NQLS---GPIPDDIFTTSSSLRYLNLSNNN-FTG----S-IPRGSIPNLETLDLS 148 (968)
T ss_pred HHhCCCCCCEEECCC----------CccC---CcCChHHhccCCCCCEEECcCCc-ccc----c-cCccccCCCCEEECc
Confidence 345566666666661 1111 12444433 56777777777765 432 0 233457778888877
Q ss_pred CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh
Q 038945 86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE 165 (363)
Q Consensus 86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~ 165 (363)
+| .+....|.. ++.+++|++|++++|.....++.. ...+++|+.|+++++.-...++....
T Consensus 149 ~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~----------~~~l~~L~~L~L~~n~l~~~~p~~l~------- 209 (968)
T PLN00113 149 NN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNS----------LTNLTSLEFLTLASNQLVGQIPRELG------- 209 (968)
T ss_pred CC-cccccCChH-HhcCCCCCEEECccCcccccCChh----------hhhCcCCCeeeccCCCCcCcCChHHc-------
Confidence 76 344445554 677788888888776533232210 22456667776665532111111000
Q ss_pred hccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhh
Q 038945 166 CNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSES 245 (363)
Q Consensus 166 ~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 245 (363)
++. +|+.-.....++....+..+..+++|+.|++++|.....+|..+..+++|+.|+++++.-...+|. .+..
T Consensus 210 ----~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~ 282 (968)
T PLN00113 210 ----QMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFS 282 (968)
T ss_pred ----CcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch--hHhh
Confidence 000 111000011112222233444555555555555543334444444555555555555432222221 1334
Q ss_pred ccccCeEeeccCcchhhhhccC----------------ccccccccccccccceecccccccccccCCCCcccCCCCccE
Q 038945 246 LVNLERMKMSDCKMMEEIIQSQ----------------VGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEH 309 (363)
Q Consensus 246 l~~L~~L~l~~c~~l~~~~~~~----------------~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~ 309 (363)
+++|+.|++++|.....++..- .+.....+..+++|+.|++++|.-...++.. ...+++|+.
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~ 360 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTV 360 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcE
Confidence 5555555555543211111000 0000111233455555555554322223322 334455555
Q ss_pred EeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 310 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 310 L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
|++++|.-...+|..+..+++|+.++++.|
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 555544333344444455555555555555
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=3.5e-18 Score=161.69 Aligned_cols=290 Identities=18% Similarity=0.186 Sum_probs=193.4
Q ss_pred CchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945 35 NSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 35 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~ 114 (363)
.+.+..+|+++..+.+|++|.+.++. +..+.... ..+|.|+.+.++.+.--..-+|.+ +-++..|..|+++++
T Consensus 41 rt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN- 113 (1255)
T KOG0444|consen 41 RTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN- 113 (1255)
T ss_pred hhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-
Confidence 35677899999999999999999987 77654444 578999999999874333445666 667899999999875
Q ss_pred Ccceecccccc-----------cccccccCCCCCccc---eeecccccccccccCcccc------------hhhhhh-hc
Q 038945 115 SLEEVLHLEEL-----------NADKEHLCPLFPKLF---SLRLIDLPKLKRFCNFTGN------------IIELLE-CN 167 (363)
Q Consensus 115 ~l~~~~~~~~~-----------~~~~~~~~~~l~~L~---~L~l~~~~~L~~l~~~~~~------------~L~~l~-~~ 167 (363)
++.++|..-+. +...++...-|-+|+ .|++++ .+|+.++++..+ -|.+.. ++
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 46666542110 111111111223333 334443 234444333320 122222 66
Q ss_pred cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945 168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLV 247 (363)
Q Consensus 168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 247 (363)
.|++++--.+++.+.+.-....+.++..+.+|..++++++ .+..+|..+..+++|+.|.+++. .++.+... .+.-.
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~ 268 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMT--EGEWE 268 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeecc--HHHHh
Confidence 7777733338888888888888999999999999999965 48888888889999999999874 44444221 22223
Q ss_pred ccCeEeeccCc------------chhhhhccCc----cccccccccccccceecccccccccccCCCCcccCCCCccEEe
Q 038945 248 NLERMKMSDCK------------MMEEIIQSQV----GEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVV 311 (363)
Q Consensus 248 ~L~~L~l~~c~------------~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~ 311 (363)
+|+.|+++++. .++.++.... ...+..++.+..|+.++..+ ..++-+|.+ ...|++|+.|.
T Consensus 269 ~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEg--lcRC~kL~kL~ 345 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEG--LCRCVKLQKLK 345 (1255)
T ss_pred hhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchh--hhhhHHHHHhc
Confidence 44444444321 1111111110 00223367788888888887 578888888 89999999999
Q ss_pred eccCCCcccccCCCcCCCCcceeecccCC
Q 038945 312 VRQCPTMKIFSQGVVDAPKLNKVKPTEEE 340 (363)
Q Consensus 312 l~~c~~l~~l~~~~~~~~~L~~L~i~~~~ 340 (363)
+ +|+.+..+|.++.-+|.|+.|++.+|+
T Consensus 346 L-~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 346 L-DHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred c-cccceeechhhhhhcCCcceeeccCCc
Confidence 9 888999999999999999999999983
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=5e-16 Score=164.57 Aligned_cols=289 Identities=16% Similarity=0.068 Sum_probs=146.6
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
..+++|++|+++. ..+. ..+|..+..+++|++|+++++.-...+|... +.+++|++|++++|.
T Consensus 137 ~~l~~L~~L~Ls~----------n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 137 GSIPNLETLDLSN----------NMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL----TNLTSLEFLTLASNQ 199 (968)
T ss_pred cccCCCCEEECcC----------Cccc---ccCChHHhcCCCCCEEECccCcccccCChhh----hhCcCCCeeeccCCC
Confidence 4578888888882 1111 1345556667778888887775223334433 467777777777763
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCccc--chhhhhh-
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTG--NIIELLE- 165 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~--~~L~~l~- 165 (363)
+....|.. ++.+++|+.|+++++.....++.. ...+++|+.|+++++.-...++.... +.|+.+.
T Consensus 200 -l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~----------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 200 -LVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYE----------IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred -CcCcCChH-HcCcCCccEEECcCCccCCcCChh----------HhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 44445544 667777777777765432222210 12455666666655421111110000 0011110
Q ss_pred --hcc----c-cch--hhHH-HHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcc
Q 038945 166 --CNF----I-RIK--SNLM-TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI 235 (363)
Q Consensus 166 --~~~----~-~l~--~~L~-l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 235 (363)
... | .+. ++|+ +.+ ...++....+..+..+++|+.|+++++.....+|..+..+++|+.|++++|.-..
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDL-SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEEC-cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 000 0 000 0000 000 0111122222334445555555555554444444444455555555555553332
Q ss_pred ccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945 236 NLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 315 (363)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 315 (363)
.+|. .++.+++|+.|++++|.....+ ...+..+++|+.|++.++.-...++.. ...+++|+.|++++|
T Consensus 347 ~~p~--~l~~~~~L~~L~Ls~n~l~~~~--------p~~~~~~~~L~~L~l~~n~l~~~~p~~--~~~~~~L~~L~L~~n 414 (968)
T PLN00113 347 EIPK--NLGKHNNLTVLDLSTNNLTGEI--------PEGLCSSGNLFKLILFSNSLEGEIPKS--LGACRSLRRVRLQDN 414 (968)
T ss_pred cCCh--HHhCCCCCcEEECCCCeeEeeC--------ChhHhCcCCCCEEECcCCEecccCCHH--HhCCCCCCEEECcCC
Confidence 3332 2344555555555554321111 111334566777777765433334333 556888999999888
Q ss_pred CCcccccCCCcCCCCcceeecccC
Q 038945 316 PTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 316 ~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.--..+|..+..+++|+.+++++|
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCC
Confidence 655567777788999999999987
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=3.1e-14 Score=134.31 Aligned_cols=134 Identities=15% Similarity=0.203 Sum_probs=72.1
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA 272 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 272 (363)
+-++..|+.|+++.+..-+.-+....+++.|+.|+++. +.++.++..+ +..+..|+.|.++++. ++.+..+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~s-f~~L~~Le~LnLs~Ns-i~~l~e~------ 359 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGS-FRVLSQLEELNLSHNS-IDHLAEG------ 359 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhH-HHHHHHhhhhcccccc-hHHHHhh------
Confidence 44557777777776653333344556788999999987 4677776543 5577888888888753 3333211
Q ss_pred cccccccccceecccccc---cccccCCCCcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeecccC
Q 038945 273 EDCIVFRKLEYLGLDCLP---SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEE 339 (363)
Q Consensus 273 ~~~~~l~~L~~L~l~~c~---~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~ 339 (363)
++..+++|+.|++.... .+++-... +..+++|++|.+.+. +++++|.... .+++|+.|++.+|
T Consensus 360 -af~~lssL~~LdLr~N~ls~~IEDaa~~--f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 360 -AFVGLSSLHKLDLRSNELSWCIEDAAVA--FNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred -HHHHhhhhhhhcCcCCeEEEEEecchhh--hccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 12334555555554431 11221111 223455555555332 4555543222 5555555555555
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=3.7e-15 Score=135.33 Aligned_cols=282 Identities=18% Similarity=0.211 Sum_probs=177.4
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK 129 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 129 (363)
.|+.|.+++|..+...+... +. ..+|++++|.+.+|.++++..-.++...+++|+.+.+..|..+.+..-
T Consensus 139 ~lk~LSlrG~r~v~~sslrt-~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-------- 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRT-FA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-------- 208 (483)
T ss_pred ccccccccccccCCcchhhH-Hh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH--------
Confidence 47777777776655544333 22 367777777777777776666556566677777777777776655431
Q ss_pred cccCCCCCccceeecccccccccc-----cCcccchhhhhh-hccccch------------hhHHHHHHhhhhhhhhccc
Q 038945 130 EHLCPLFPKLFSLRLIDLPKLKRF-----CNFTGNIIELLE-CNFIRIK------------SNLMTRLFALQHLLKENAE 191 (363)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~L~~l-----~~~~~~~L~~l~-~~~~~l~------------~~L~l~~~~~~~l~~~~~~ 191 (363)
...+.+|++|+.|++++|+.+..= ..+.. .++.+. +.|..+. ..+++.+..|..++++..-
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~-~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK-ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccch-hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 111336777777777777666540 00000 011111 1222222 0122344456556655544
Q ss_pred cc-ccCCCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhh-hccC
Q 038945 192 SN-KVFANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEI-IQSQ 267 (363)
Q Consensus 192 ~l-~~l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~ 267 (363)
.+ .....|+.|+.++|..+.+.+ .-...+.+|+.|.+.+|..+++.....+..+.+.|+.+++.+|..+.+. +..
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s- 366 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS- 366 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-
Confidence 33 445688888888887766443 2345678999999999988888766666677889999999888765543 111
Q ss_pred ccccccccccccccceecccccccccccCCCC---cccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccCCCCC
Q 038945 268 VGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGN---YALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEEEDGD 343 (363)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~---~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~~~~~ 343 (363)
.-.++|.|+.+.++.|..+++..... .......|+.+.+.+|+.++.... -+.++++|+.+++.+.
T Consensus 367 ------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~---- 436 (483)
T KOG4341|consen 367 ------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC---- 436 (483)
T ss_pred ------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech----
Confidence 12468999999999998877662211 134466899999999999885543 3448899999999988
Q ss_pred CccccCCcchHHHHH
Q 038945 344 DEGCWEGNLNDTKKK 358 (363)
Q Consensus 344 ~~~~~~~~~~~~~~~ 358 (363)
++--++.|++
T Consensus 437 -----q~vtk~~i~~ 446 (483)
T KOG4341|consen 437 -----QDVTKEAISR 446 (483)
T ss_pred -----hhhhhhhhHH
Confidence 5555555543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.33 E-value=3.8e-13 Score=127.04 Aligned_cols=271 Identities=17% Similarity=0.191 Sum_probs=159.7
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD 128 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 128 (363)
.++++|+|+++. ++.+..+. ...+.+|..|.++.+ .++. +|...+++++.|+.|++..+ .++.+...
T Consensus 173 ~ni~~L~La~N~-It~l~~~~---F~~lnsL~tlkLsrN-ritt-Lp~r~Fk~L~~L~~LdLnrN-~irive~l------ 239 (873)
T KOG4194|consen 173 VNIKKLNLASNR-ITTLETGH---FDSLNSLLTLKLSRN-RITT-LPQRSFKRLPKLESLDLNRN-RIRIVEGL------ 239 (873)
T ss_pred CCceEEeecccc-cccccccc---ccccchheeeecccC-cccc-cCHHHhhhcchhhhhhcccc-ceeeehhh------
Confidence 457777777765 66543222 245667888888776 4554 45455888888888888753 34433111
Q ss_pred ccccCCCCCccceeecc-------------cccccccccCcccchhhhhh-hccccchhhHHHHHHhhhhhhhhcccccc
Q 038945 129 KEHLCPLFPKLFSLRLI-------------DLPKLKRFCNFTGNIIELLE-CNFIRIKSNLMTRLFALQHLLKENAESNK 194 (363)
Q Consensus 129 ~~~~~~~l~~L~~L~l~-------------~~~~L~~l~~~~~~~L~~l~-~~~~~l~~~L~l~~~~~~~l~~~~~~~l~ 194 (363)
+..++++|+.|.+. +|.+++.+....+ .+..+. ...-+++ +|+....+.+.+..-++.+-.
T Consensus 240 ---tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 240 ---TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ---hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccc-hhhhhccchhhhheeecchhh
Confidence 12345555555442 2333333222221 111111 1111222 222111111222222233344
Q ss_pred cCCCccEEEeccCcCcccc-cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945 195 VFANLKSLEISECSQLQKL-VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE 273 (363)
Q Consensus 195 ~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 273 (363)
-.++|+.|+++.+. +..+ +..+..++.|+.|.++. ++++.+.. +.+..+.+|+.|++.++.- .-.+. + ...
T Consensus 315 ftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~l-s~~IE--D--aa~ 386 (873)
T KOG4194|consen 315 FTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNEL-SWCIE--D--AAV 386 (873)
T ss_pred hcccceeEeccccc-cccCChhHHHHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCeE-EEEEe--c--chh
Confidence 45899999999876 4444 34566788999999987 46777654 3466889999999988642 11111 1 223
Q ss_pred ccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCccccC
Q 038945 274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGCWE 349 (363)
Q Consensus 274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~~~ 349 (363)
.+..+++|+.|.+.+ ..++.++..+ +..+++|++|++.+. .+.++-... .++ .|++|.+..- -=||+.+.|-
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC-cceeecccccccc-hhhhhhhcccceEEeccHHHH
Confidence 356799999999999 4889888765 677999999999555 555555444 466 9999998877 3344455553
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=2.2e-13 Score=123.96 Aligned_cols=240 Identities=16% Similarity=0.208 Sum_probs=158.9
Q ss_pred CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCc
Q 038945 77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNF 156 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 156 (363)
.-|+.|.+++|.............++|++++|.+.+|..+.+..- ...+..|++|+.+++..|..+++.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~--------~sla~~C~~l~~l~L~~c~~iT~~--- 206 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL--------LSLARYCRKLRHLNLHSCSSITDV--- 206 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH--------HHHHHhcchhhhhhhcccchhHHH---
Confidence 369999999999888777777788999999999999997765431 112447999999999999999885
Q ss_pred ccchhhhhhhccccchhhHHHHHHhhhhhhhhccccc-ccCCC--------------------------ccEEEeccCcC
Q 038945 157 TGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESN-KVFAN--------------------------LKSLEISECSQ 209 (363)
Q Consensus 157 ~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l-~~l~~--------------------------L~~L~l~~c~~ 209 (363)
.|..+...|+++. .+.+.-++.+..+.+..+ .+... +.++++.+|..
T Consensus 207 ---~Lk~la~gC~kL~---~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 207 ---SLKYLAEGCRKLK---YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred ---HHHHHHHhhhhHH---HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 5666666676665 222333333333333221 22233 33344445544
Q ss_pred cccc--cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945 210 LQKL--VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 287 (363)
Q Consensus 210 l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 287 (363)
+++. +..-..+..|+.|+.++|..+++.+....-+..++|+.+.+..|.++.+.-.. ..-.+.+.|+.+++.
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft------~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT------MLGRNCPHLERLDLE 354 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh------hhhcCChhhhhhccc
Confidence 4333 22223567788888888888877766666667788888888888876654221 112357788888888
Q ss_pred ccccccccCCCCcccCCCCccEEeeccCCCcccc-----cCCCcCCCCcceeecccC
Q 038945 288 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-----SQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 288 ~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~i~~~ 339 (363)
+|-...+-........||.|+.+.++.|..+++. .....++..|..+++++.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 8755544322223556888999999888877765 334446777888888766
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=2.2e-10 Score=115.86 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=81.6
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
.+|+.|+++++. ++.+|.. .++|+.|+++++ .+..+|. ..++|+.|+++++. +..++.
T Consensus 342 ~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~----------- 399 (788)
T PRK15387 342 SGLQELSVSDNQ-LASLPTL---PSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLPV----------- 399 (788)
T ss_pred cccceEecCCCc-cCCCCCC---Ccccceehhhcc-ccccCcc-----cccccceEEecCCc-ccCCCC-----------
Confidence 478889988764 5555532 467888888764 5665553 23578999998864 343321
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
..++|+.|+++++ .++.++.. ..+|+.|+++++ +++.+|..+..+++|+.|++++|
T Consensus 400 l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 400 LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhccC-cccccChHHhhccCCCeEECCCC
Confidence 2357999999986 56666542 357888999665 78899999999999999999999
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=3.4e-11 Score=123.86 Aligned_cols=313 Identities=21% Similarity=0.244 Sum_probs=175.8
Q ss_pred ccccCCCceeEEEeeecccceeeeccCCCchhhhhhh-ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945 7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYI-EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD 85 (363)
Q Consensus 7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 85 (363)
+-..+|+|.+|-+..... .+..++. .+..+|.|..||+++|.++.++|..+ +.+-+||+|+++
T Consensus 540 ~~~~~~~L~tLll~~n~~------------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~ 603 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSD------------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLS 603 (889)
T ss_pred CCCCCCccceEEEeecch------------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHH----hhhhhhhccccc
Confidence 345566777777772110 1122221 13446777888888777777777776 577788888877
Q ss_pred CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc-ccccccC---cccchh
Q 038945 86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP-KLKRFCN---FTGNII 161 (363)
Q Consensus 86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~L~~l~~---~~~~~L 161 (363)
++ .+.+ +|.+ +++++.|.+|++.....+..++.. ...+++|+.|.+..-. .....-. ..-..|
T Consensus 604 ~t-~I~~-LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i----------~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 604 DT-GISH-LPSG-LGNLKKLIYLNLEVTGRLESIPGI----------LLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred CC-Cccc-cchH-HHHHHhhheeccccccccccccch----------hhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 65 4553 5655 777778888877766655444211 1235566665543211 0000000 000011
Q ss_pred hhhh------------hccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCccccccc-----ccC-CCCC
Q 038945 162 ELLE------------CNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPA-----SCY-LENL 223 (363)
Q Consensus 162 ~~l~------------~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~-~~~L 223 (363)
..+. ...+++.+. ...+............++..+.+|++|.|.+|...+..... ... |+++
T Consensus 671 ~~ls~~~~s~~~~e~l~~~~~L~~~-~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 671 ENLSITISSVLLLEDLLGMTRLRSL-LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhheeecchhHhHhhhhhhHHHHHH-hHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 1111 000111100 01111011122233556788899999999999876543221 112 6678
Q ss_pred CEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc-cc-cccccccccee-cccccccccccCCCCc
Q 038945 224 ATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE-AE-DCIVFRKLEYL-GLDCLPSLTSFCLGNY 300 (363)
Q Consensus 224 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~-~~~~l~~L~~L-~l~~c~~L~~~~~~~~ 300 (363)
..+.+.+|...+...+. .-.|+|+.|++..|..+++++...+... .. .+..+.++..+ .+.+..++..+...
T Consensus 750 ~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~-- 824 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL-- 824 (889)
T ss_pred HHHHhhccccccccchh---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec--
Confidence 88888888887776433 3458999999999999887755432211 11 23445566666 45555555555444
Q ss_pred ccCCCCccEEeeccCCCcccccCCCc-CCCCc-ceeecccCCCCCCccccCCcchH
Q 038945 301 ALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKL-NKVKPTEEEDGDDEGCWEGNLND 354 (363)
Q Consensus 301 ~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L-~~L~i~~~~~~~~~~~~~~~~~~ 354 (363)
...+++|+.+.+..||++..+|.... ...+- ..+......+|.+.+.|++++..
T Consensus 825 ~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 880 (889)
T KOG4658|consen 825 PLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTK 880 (889)
T ss_pred ccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhh
Confidence 34466799999999999998885433 22222 23333444578888999988543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.10 E-value=3e-12 Score=121.96 Aligned_cols=216 Identities=22% Similarity=0.254 Sum_probs=131.0
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+.-+|..+..+..|++|+|++++ +......+ +| +|.+|+.|++++..+-...+|.+ +..+.||+.++++. +++
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LP--smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~-N~L 234 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LP--SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSE-NNL 234 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cc--cchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccc-cCC
Confidence 455678888888889999999888 66544444 44 68888888898877766667766 78889999999985 456
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF 196 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l 196 (363)
..+|..-+ .+++|++|++++.. ++.+... .+.-
T Consensus 235 p~vPecly----------~l~~LrrLNLS~N~-iteL~~~------------------------------------~~~W 267 (1255)
T KOG0444|consen 235 PIVPECLY----------KLRNLRRLNLSGNK-ITELNMT------------------------------------EGEW 267 (1255)
T ss_pred CcchHHHh----------hhhhhheeccCcCc-eeeeecc------------------------------------HHHH
Confidence 66654322 56788888888642 3332100 0011
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
.+|++|+++.+. +..+|..+..++.|+.|.+.+. +++.-...+-++++.+|+.+..+++. ++-++. .+.
T Consensus 268 ~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElVPE--------glc 336 (1255)
T KOG0444|consen 268 ENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE--------GLC 336 (1255)
T ss_pred hhhhhhccccch-hccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccCch--------hhh
Confidence 456666666543 5566666666666666666543 22221111225666666666655532 332222 244
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcc
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 319 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~ 319 (363)
.++.|+.|.++. ..+..+|.+ +.-++.|+.|+++..+++.
T Consensus 337 RC~kL~kL~L~~-NrLiTLPea--IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 337 RCVKLQKLKLDH-NRLITLPEA--IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhHHHHHhcccc-cceeechhh--hhhcCCcceeeccCCcCcc
Confidence 566666666654 355556655 4456666666666666665
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=3.9e-10 Score=114.43 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=57.7
Q ss_pred CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945 198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV 277 (363)
Q Consensus 198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 277 (363)
+|+.|++++|. +..+|..+ .++|+.|++++| .++.+|.. + .++|+.|++++|. +..++.. .
T Consensus 305 sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~--l--~~sL~~L~Ls~N~-L~~LP~~----------l 365 (754)
T PRK15370 305 GITHLNVQSNS-LTALPETL--PPGLKTLEAGEN-ALTSLPAS--L--PPELQVLDVSKNQ-ITVLPET----------L 365 (754)
T ss_pred hHHHHHhcCCc-cccCCccc--cccceeccccCC-ccccCChh--h--cCcccEEECCCCC-CCcCChh----------h
Confidence 45555555543 33333221 346666666665 34444421 1 2566666666653 2222110 1
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc----CCCCcceeecccC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV----DAPKLNKVKPTEE 339 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~~L~~L~i~~~ 339 (363)
.++|+.|++++| .+..++.. . .++|+.|++++| +++.+|..+. .++++..+++.+|
T Consensus 366 p~~L~~LdLs~N-~Lt~LP~~--l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 366 PPTITTLDVSRN-ALTNLPEN--L--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cCCcCEEECCCC-cCCCCCHh--H--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 245666666665 44444433 1 125666666554 5555554332 3466667777666
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=6.7e-11 Score=107.52 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=72.8
Q ss_pred CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945 207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 286 (363)
Q Consensus 207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 286 (363)
...+..++..+..+++|..|++++. -+.++|.. .+.+..|+.|+++.+. ...++.. +..+..++.+-.
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~~--------~y~lq~lEtlla 488 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEE--MGSLVRLQTLNLSFNR-FRMLPEC--------LYELQTLETLLA 488 (565)
T ss_pred cCccccchHHHHhhhcceeeecccc-hhhhcchh--hhhhhhhheecccccc-cccchHH--------HhhHHHHHHHHh
Confidence 3345555556667777788888763 45566654 4566678888877653 2222111 222333444444
Q ss_pred cccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 287 DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 287 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
++ ..+..++... .+.+.+|..|++ +.+.+..+|.++++|++|+.|++.+|
T Consensus 489 s~-nqi~~vd~~~-l~nm~nL~tLDL-~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 489 SN-NQIGSVDPSG-LKNMRNLTTLDL-QNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred cc-ccccccChHH-hhhhhhcceecc-CCCchhhCChhhccccceeEEEecCC
Confidence 43 3455454432 566778888888 55578888888888888888888888
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=2.8e-12 Score=116.34 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=95.8
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+..|++++.-.+ .++.+|+.++.+.+|..|+++. +++..+|. ++++..|+.|++... +++.+++. ..
T Consensus 182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe---f~gcs~L~Elh~g~N-~i~~lpae-------~~ 248 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPE---FPGCSLLKELHVGEN-QIEMLPAE-------HL 248 (565)
T ss_pred HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCC---CCccHHHHHHHhccc-HHHhhHHH-------Hh
Confidence 566777766443 3778888888888888888877 36767764 467778888876653 45544332 13
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
..+++|..|++.+ .+++.+|.+ +.-+.+|++|++++. .+..+|..++++ .|+.|.+.||
T Consensus 249 ~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 249 KHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cccccceeeeccc-cccccCchH--HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence 4688999999988 488999888 777889999999554 889999999999 8999999998
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.97 E-value=1.8e-09 Score=109.68 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=121.2
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD 128 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 128 (363)
++|+.|+++++. ++.+|... +.+|+.|++++| +++. +|.. + .++|+.|++++|. +..++..
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~~l------~~nL~~L~Ls~N-~Lts-LP~~-l--~~~L~~L~Ls~N~-L~~LP~~------ 259 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPENL------QGNIKTLYANSN-QLTS-IPAT-L--PDTIQEMELSINR-ITELPER------ 259 (754)
T ss_pred cCCcEEEecCCC-CCcCChhh------ccCCCEEECCCC-cccc-CChh-h--hccccEEECcCCc-cCcCChh------
Confidence 457777777765 66654333 357777777776 4554 4433 2 2467777777654 4444310
Q ss_pred ccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCc
Q 038945 129 KEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS 208 (363)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 208 (363)
..++|+.|++++ .++..++... .++|+.|++++|.
T Consensus 260 ------l~s~L~~L~Ls~-N~L~~LP~~l--------------------------------------~~sL~~L~Ls~N~ 294 (754)
T PRK15370 260 ------LPSALQSLDLFH-NKISCLPENL--------------------------------------PEELRYLSVYDNS 294 (754)
T ss_pred ------HhCCCCEEECcC-CccCcccccc--------------------------------------CCCCcEEECCCCc
Confidence 123577777763 3444432111 1578888888873
Q ss_pred CcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccc
Q 038945 209 QLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDC 288 (363)
Q Consensus 209 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 288 (363)
++.+|..+ .++|+.|+++++ .++.+|.. -.++|+.|++.+|. +..++.. ..++|+.|++++
T Consensus 295 -Lt~LP~~l--p~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N~-Lt~LP~~----------l~~sL~~L~Ls~ 355 (754)
T PRK15370 295 -IRTLPAHL--PSGITHLNVQSN-SLTALPET----LPPGLKTLEAGENA-LTSLPAS----------LPPELQVLDVSK 355 (754)
T ss_pred -cccCcccc--hhhHHHHHhcCC-ccccCCcc----ccccceeccccCCc-cccCChh----------hcCcccEEECCC
Confidence 55555432 356788888775 45555432 23678888888875 3333211 136888999888
Q ss_pred cccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 289 LPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 289 c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
| .+..++.. . .++|++|++++| +++.+|..+. ++|+.|++++|
T Consensus 356 N-~L~~LP~~--l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 356 N-QITVLPET--L--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred C-CCCcCChh--h--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence 6 46656543 2 358899999776 6777776543 36888888887
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=3.8e-11 Score=119.12 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=53.9
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD 128 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 128 (363)
.+|+++++++.. +..+|... +.+++|+.|.+.++ .+. ..|.. +....+|+.|.+..| .++.++...
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi----~~~~nle~l~~n~N-~l~-~lp~r-i~~~~~L~~l~~~~n-el~yip~~l----- 306 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWI----GACANLEALNANHN-RLV-ALPLR-ISRITSLVSLSAAYN-ELEYIPPFL----- 306 (1081)
T ss_pred ccceeeecchhh-hhcchHHH----HhcccceEecccch-hHH-hhHHH-HhhhhhHHHHHhhhh-hhhhCCCcc-----
Confidence 458888888876 77766555 57888888888776 443 35555 666788888888765 366666433
Q ss_pred ccccCCCCCccceeeccc
Q 038945 129 KEHLCPLFPKLFSLRLID 146 (363)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~ 146 (363)
.++.+|+.|++..
T Consensus 307 -----e~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 307 -----EGLKSLRTLDLQS 319 (1081)
T ss_pred -----cccceeeeeeehh
Confidence 2466777777764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=1.9e-08 Score=102.04 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=57.8
Q ss_pred CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945 198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV 277 (363)
Q Consensus 198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 277 (363)
.|+.|.+++|. +..+|. ...+|+.|+++++ .++.+|.. .++|+.|+++++. +..++. .
T Consensus 323 ~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N-~Ls~LP~l-----p~~L~~L~Ls~N~-L~~LP~-----------l 380 (788)
T PRK15387 323 ELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDN-QLASLPTL-----PSELYKLWAYNNR-LTSLPA-----------L 380 (788)
T ss_pred cccccccccCc-cccccc---cccccceEecCCC-ccCCCCCC-----Ccccceehhhccc-cccCcc-----------c
Confidence 45555555543 233332 1235666666653 44444421 2455566655532 332211 1
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.++|+.|+++++ .++.++.. .++|+.|+++++ .++.+|.. ..+|+.|++++|
T Consensus 381 ~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 381 PSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN 432 (788)
T ss_pred ccccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC
Confidence 246777777764 45555432 356778888665 56666643 245677777776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=1.5e-09 Score=100.48 Aligned_cols=16 Identities=13% Similarity=0.136 Sum_probs=8.7
Q ss_pred HhhcCCCCEEEEccCC
Q 038945 99 IRCLNNLASLEVRNCD 114 (363)
Q Consensus 99 l~~l~~L~~L~l~~~~ 114 (363)
+..+++|++|++++|.
T Consensus 77 l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 77 LTKGCGLQELDLSDNA 92 (319)
T ss_pred HHhcCceeEEEccCCC
Confidence 4445566666665544
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=7.2e-10 Score=110.24 Aligned_cols=248 Identities=18% Similarity=0.184 Sum_probs=139.8
Q ss_pred CCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCc
Q 038945 12 PKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMS 91 (363)
Q Consensus 12 ~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~ 91 (363)
-||+++.++ -+.+..+|+.+..|.+|+.|++.++. +..++... ....+|+.|.+.+| .+.
T Consensus 241 ~nl~~~dis--------------~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri----~~~~~L~~l~~~~n-el~ 300 (1081)
T KOG0618|consen 241 LNLQYLDIS--------------HNNLSNLPEWIGACANLEALNANHNR-LVALPLRI----SRITSLVSLSAAYN-ELE 300 (1081)
T ss_pred ccceeeecc--------------hhhhhcchHHHHhcccceEecccchh-HHhhHHHH----hhhhhHHHHHhhhh-hhh
Confidence 466777777 23456678889999999999999987 88877666 57889999999988 566
Q ss_pred ccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccc
Q 038945 92 SAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRI 171 (363)
Q Consensus 92 ~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l 171 (363)
..+|. .+.++.|++|++..+ ++..++.... ...-.+|+.|+.+. .++...+.... ..
T Consensus 301 yip~~--le~~~sL~tLdL~~N-~L~~lp~~~l--------~v~~~~l~~ln~s~-n~l~~lp~~~e-----------~~ 357 (1081)
T KOG0618|consen 301 YIPPF--LEGLKSLRTLDLQSN-NLPSLPDNFL--------AVLNASLNTLNVSS-NKLSTLPSYEE-----------NN 357 (1081)
T ss_pred hCCCc--ccccceeeeeeehhc-cccccchHHH--------hhhhHHHHHHhhhh-ccccccccccc-----------hh
Confidence 54553 677999999999875 4655553110 00111233333331 12222110000 00
Q ss_pred hhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccC
Q 038945 172 KSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE 250 (363)
Q Consensus 172 ~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 250 (363)
.+.|+.-...-+++++..++.+.++.+|+.|+++++. +..+|. .+.+++.|++|++++. +++.+|.. +..++.|+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t--va~~~~L~ 433 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDT--VANLGRLH 433 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHH--HHhhhhhH
Confidence 1233433444555666666667777777777776654 333332 3445666666666663 55555532 44555555
Q ss_pred eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCc
Q 038945 251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM 318 (363)
Q Consensus 251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l 318 (363)
.|....+. +..++ .+..++.|+.++++. .++..+...+ ....|.|++|++++.+.+
T Consensus 434 tL~ahsN~-l~~fP---------e~~~l~qL~~lDlS~-N~L~~~~l~~-~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 434 TLRAHSNQ-LLSFP---------ELAQLPQLKVLDLSC-NNLSEVTLPE-ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HHhhcCCc-eeech---------hhhhcCcceEEeccc-chhhhhhhhh-hCCCcccceeeccCCccc
Confidence 55544322 22111 133456666666653 3444433221 222356666666665543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=4.3e-09 Score=97.31 Aligned_cols=275 Identities=17% Similarity=0.084 Sum_probs=153.6
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccccccCc-C--CCCCCCCccEEEe
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQA-L--PVSFFNNLRHLVL 84 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-l--~~~~l~~L~~L~l 84 (363)
..+++|+.+.+.. ..+.. ....++..+...+.+++|+++++. +...+.... + ....+++|++|++
T Consensus 20 ~~l~~L~~l~l~~----------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 20 PKLLCLQVLRLEG----------NTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred HHHhhccEEeecC----------CCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEc
Confidence 4456688888882 22222 344556666677889999998875 431111100 0 0135789999999
Q ss_pred cCCCCCcccCchhHHhhcCC---CCEEEEccCCCcceecccccccccccccCCCC-CccceeecccccccccccCcccch
Q 038945 85 DDCKNMSSAIPANLIRCLNN---LASLEVRNCDSLEEVLHLEELNADKEHLCPLF-PKLFSLRLIDLPKLKRFCNFTGNI 160 (363)
Q Consensus 85 ~~c~~l~~~~p~~~l~~l~~---L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~L~~l~~~~~~~ 160 (363)
++|.. ....+.. +..+.+ |++|++++|. +..... .. .......+ ++|+.|++++|. +..- .
T Consensus 89 ~~~~~-~~~~~~~-~~~l~~~~~L~~L~ls~~~-~~~~~~-~~----l~~~l~~~~~~L~~L~L~~n~-l~~~------~ 153 (319)
T cd00116 89 SDNAL-GPDGCGV-LESLLRSSSLQELKLNNNG-LGDRGL-RL----LAKGLKDLPPALEKLVLGRNR-LEGA------S 153 (319)
T ss_pred cCCCC-ChhHHHH-HHHHhccCcccEEEeeCCc-cchHHH-HH----HHHHHHhCCCCceEEEcCCCc-CCch------H
Confidence 99854 3223332 555555 9999999875 332100 00 00012244 789999999875 2210 0
Q ss_pred hhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc----cccccccCCCCCCEEeeccCcCccc
Q 038945 161 IELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ----KLVPASCYLENLATLEVSKCHGLIN 236 (363)
Q Consensus 161 L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~~l~~ 236 (363)
.. .....+..++.|++|++++|..-. .++..+..+++|++|++++|. +..
T Consensus 154 ~~-------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 207 (319)
T cd00116 154 CE-------------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTD 207 (319)
T ss_pred HH-------------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cCh
Confidence 00 001123344789999999886331 233334456799999999884 332
Q ss_pred cCc---hhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCC---CCcccCCCCccEE
Q 038945 237 LLT---LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCL---GNYALEFPSLEHV 310 (363)
Q Consensus 237 ~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~---~~~~~~~~~L~~L 310 (363)
... ...+..+++|++|++++|.--...+.. -.... ....+.|++|++.+| .+++... ......+++|+++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~-l~~~~--~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAA-LASAL--LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcCchHHHHH-HHHHH--hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEE
Confidence 221 123456788999999998632211000 00000 012478999999987 3431111 1113446789999
Q ss_pred eeccCCCccc----ccCCCcCC-CCcceeecccC
Q 038945 311 VVRQCPTMKI----FSQGVVDA-PKLNKVKPTEE 339 (363)
Q Consensus 311 ~l~~c~~l~~----l~~~~~~~-~~L~~L~i~~~ 339 (363)
+++++.--.. +....... +.|+++++.++
T Consensus 284 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 9977643221 22233344 68899998877
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.9e-10 Score=98.35 Aligned_cols=185 Identities=20% Similarity=0.171 Sum_probs=116.2
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK 129 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 129 (363)
.|++||+++.. ++...... ....|.+|+.|.+.+. .+.+..-.. +.+-.+|+.|+++.|..+.+...
T Consensus 186 Rlq~lDLS~s~-it~stl~~--iLs~C~kLk~lSlEg~-~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~-------- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHG--ILSQCSKLKNLSLEGL-RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENAL-------- 252 (419)
T ss_pred hhHHhhcchhh-eeHHHHHH--HHHHHHhhhhcccccc-ccCcHHHHH-HhccccceeeccccccccchhHH--------
Confidence 38888888865 55422111 1146888999999887 565533333 77778999999999888765432
Q ss_pred cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945 130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ 209 (363)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~ 209 (363)
.....+|+.|..|++++|.--... +.+ ...++- +.|+.|++++|..
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~---------------------Vtv---~V~his----------e~l~~LNlsG~rr 298 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEK---------------------VTV---AVAHIS----------ETLTQLNLSGYRR 298 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchh---------------------hhH---HHhhhc----------hhhhhhhhhhhHh
Confidence 111346888888888887432221 000 111111 6788888888752
Q ss_pred -cc--cccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945 210 -LQ--KLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 286 (363)
Q Consensus 210 -l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 286 (363)
+. .+.--...+++|.+||+++|..++.- -...+..++.|++|.++.|..+..- ..-.+...|+|.+|++
T Consensus 299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~-------~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPE-------TLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChH-------HeeeeccCcceEEEEe
Confidence 11 11112346888899999888877762 2233557888888888888765321 1222456788888888
Q ss_pred ccc
Q 038945 287 DCL 289 (363)
Q Consensus 287 ~~c 289 (363)
.+|
T Consensus 371 ~g~ 373 (419)
T KOG2120|consen 371 FGC 373 (419)
T ss_pred ccc
Confidence 877
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=2.5e-08 Score=103.07 Aligned_cols=90 Identities=21% Similarity=0.189 Sum_probs=63.2
Q ss_pred ccccceEecccCcC-cccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 48 FRDIENIKLSLFPR-LKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 48 ~~~L~~L~l~~~~~-l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
++.|.+|-+..+.. +..++... ...++.|+.|++++|..+.. +|.. ++.+-+||+|++++. .+..+|..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t-~I~~LP~~---- 613 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDT-GISHLPSG---- 613 (889)
T ss_pred CCccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCC-CccccchH----
Confidence 46788888877653 44433322 13699999999999887775 6766 999999999999975 46655532
Q ss_pred ccccccCCCCCccceeecccccccccc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDLPKLKRF 153 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l 153 (363)
...+..|..|++.....+..+
T Consensus 614 ------l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 614 ------LGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred ------HHHHHhhheeccccccccccc
Confidence 225667777888776666554
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-08 Score=93.31 Aligned_cols=214 Identities=17% Similarity=0.193 Sum_probs=124.9
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcc-cCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSS-AIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL 125 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~-~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 125 (363)
++..|+.+-|.+++ +...+... .. ..|++++.|+++.+ -+.. .....++..+|+|+.|.++.+.....+....
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~-~~-k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-- 192 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEE-YS-KILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-- 192 (505)
T ss_pred hHHhhhheeecCcc-ccccchhh-hh-hhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccc--
Confidence 46778888888887 66644211 11 36888888888874 2221 1235567788888888888654222111110
Q ss_pred cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945 126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS 205 (363)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~ 205 (363)
-..+++|+.|.++.|. +. | .++.++ +..+|+|+.|.++
T Consensus 193 -------~~~l~~lK~L~l~~CG-ls--~-------------------------k~V~~~-------~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 193 -------TLLLSHLKQLVLNSCG-LS--W-------------------------KDVQWI-------LLTFPSLEVLYLE 230 (505)
T ss_pred -------hhhhhhhheEEeccCC-CC--H-------------------------HHHHHH-------HHhCCcHHHhhhh
Confidence 1156788888888884 11 0 011111 2334778888888
Q ss_pred cCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceec
Q 038945 206 ECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLG 285 (363)
Q Consensus 206 ~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 285 (363)
.+..+.........+..|+.|++++.+.+ +++.....+.+|.|+.|+++.|.. .++. ..+.+..+-...+++|++|+
T Consensus 231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi-~si~-~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 231 ANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGI-ASIA-EPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred cccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCc-chhc-CCCccchhhhcccccceeee
Confidence 77533333333445778888888886544 344444567788888888887753 3221 11222233345688888888
Q ss_pred ccccccccccCCCCcccCCCCccEEee
Q 038945 286 LDCLPSLTSFCLGNYALEFPSLEHVVV 312 (363)
Q Consensus 286 l~~c~~L~~~~~~~~~~~~~~L~~L~l 312 (363)
+..+ .+.++..-......++|++|.+
T Consensus 308 i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 308 ISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccC-ccccccccchhhccchhhhhhc
Confidence 8774 4444444332455667777765
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.47 E-value=8.2e-09 Score=83.85 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=93.2
Q ss_pred ccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcc
Q 038945 190 AESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG 269 (363)
Q Consensus 190 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 269 (363)
++.+..+.+|+.|+++++. ++.+|..+.+++.|++|.+. ..++..+|.. ++.+|.|+.|++....--+....+
T Consensus 49 ppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvg-mnrl~~lprg--fgs~p~levldltynnl~e~~lpg--- 121 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVG-MNRLNILPRG--FGSFPALEVLDLTYNNLNENSLPG--- 121 (264)
T ss_pred CCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecc-hhhhhcCccc--cCCCchhhhhhccccccccccCCc---
Confidence 4456667888888888764 78888888889999999985 4567777755 788899999998875432211110
Q ss_pred ccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+..+..|+-|.+.+ ...+.++.+ .+.+++|+-|.+++. .+-++|.+++.++.|++|+|.+|
T Consensus 122 ----nff~m~tlralyl~d-ndfe~lp~d--vg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 122 ----NFFYMTTLRALYLGD-NDFEILPPD--VGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ----chhHHHHHHHHHhcC-CCcccCChh--hhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence 122355666667766 356666666 666777777777555 55567777777777777777776
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.8e-08 Score=85.54 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=98.9
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccC--------
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQ-------- 267 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-------- 267 (363)
...|+.|.+.+..--+.+...++.-++|+.|++++|.+++.....-++.++..|..|+++.|...++.....
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 355666666665544444444555667777777777777666554455667777777777665433321000
Q ss_pred ------------ccccccc-cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc-ccCCCcCCCCcce
Q 038945 268 ------------VGEEAED-CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI-FSQGVVDAPKLNK 333 (363)
Q Consensus 268 ------------~~~~~~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~ 333 (363)
...+... ...+|.|..|++++|..++.- ....+..++.|++|.++.|..+.. .-.++...|+|..
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 0001111 235788999999988777752 222367789999999999988762 2245568999999
Q ss_pred eecccCCCCCCccccCCcchHHHHHhhhcC
Q 038945 334 VKPTEEEDGDDEGCWEGNLNDTKKKLFNEM 363 (363)
Q Consensus 334 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (363)
|++.++ +++|-+.+|+||
T Consensus 368 Ldv~g~------------vsdt~mel~~e~ 385 (419)
T KOG2120|consen 368 LDVFGC------------VSDTTMELLKEM 385 (419)
T ss_pred EEeccc------------cCchHHHHHHHh
Confidence 999999 556666777776
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.40 E-value=9.3e-09 Score=83.54 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=103.5
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|..+..+.+|+.|+++++. ++++|.++ +++++|+.|++.-+ ++. ..|.+ ++.+|.|+.|++..+.--
T Consensus 44 Kl~~vppnia~l~nlevln~~nnq-ie~lp~~i----ssl~klr~lnvgmn-rl~-~lprg-fgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI----SSLPKLRILNVGMN-RLN-ILPRG-FGSFPALEVLDLTYNNLN 115 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccch-hhhcChhh----hhchhhhheecchh-hhh-cCccc-cCCCchhhhhhccccccc
Confidence 455678888889999999999987 99988887 78999999999754 444 47777 888999999999875432
Q ss_pred ce-ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhccccccc
Q 038945 117 EE-VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKV 195 (363)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~ 195 (363)
+. ++.. .-.+..|+.|.+++.+ .+ ..++.++.
T Consensus 116 e~~lpgn----------ff~m~tlralyl~dnd-fe------------------------------------~lp~dvg~ 148 (264)
T KOG0617|consen 116 ENSLPGN----------FFYMTTLRALYLGDND-FE------------------------------------ILPPDVGK 148 (264)
T ss_pred cccCCcc----------hhHHHHHHHHHhcCCC-cc------------------------------------cCChhhhh
Confidence 22 1110 0023455666666432 11 11445677
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLT 239 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 239 (363)
+.+|+-|.+.++. +-.+|..++.+.+|++|.+.+. +++.+|+
T Consensus 149 lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 149 LTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred hcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 7888888888876 4467777788889999999884 6777663
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.29 E-value=1.6e-07 Score=85.79 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=70.9
Q ss_pred hhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc
Q 038945 241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 320 (363)
Q Consensus 241 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 320 (363)
.-++.+++|+.|+++++. ++.+-.+ ++....+++.|.+.. .+++.+..+- +..+..|+.|++.+. +++.
T Consensus 268 ~cf~~L~~L~~lnlsnN~-i~~i~~~-------aFe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~N-~it~ 336 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNK-ITRIEDG-------AFEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYDN-QITT 336 (498)
T ss_pred HHHhhcccceEeccCCCc-cchhhhh-------hhcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecCC-eeEE
Confidence 346789999999998854 4544221 234577899999987 4677665543 667888999999666 6665
Q ss_pred ccC-CCcCCCCcceeecccC-CCCCCccccCCc
Q 038945 321 FSQ-GVVDAPKLNKVKPTEE-EDGDDEGCWEGN 351 (363)
Q Consensus 321 l~~-~~~~~~~L~~L~i~~~-~~~~~~~~~~~~ 351 (363)
+.. ...++.+|.+|.+-.| -.+++.+.|-.+
T Consensus 337 ~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 337 VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred EecccccccceeeeeehccCcccCccchHHHHH
Confidence 544 4558899999999988 556666666543
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.26 E-value=2.1e-07 Score=91.00 Aligned_cols=114 Identities=21% Similarity=0.180 Sum_probs=67.0
Q ss_pred cccccccceEecccC-cCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccc
Q 038945 45 MIGFRDIENIKLSLF-PRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLE 123 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~-~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 123 (363)
...++.|+.|+++++ ......+.........+++|+.|++.+|..+++..-..+...+++|++|.+.+|..+.+..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g--- 286 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG--- 286 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH---
Confidence 345678888888763 3222222111011135678888888888767766666655568888888877777643221
Q ss_pred cccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccch
Q 038945 124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIK 172 (363)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~ 172 (363)
....+..+++|+.|+++.|..+.+- ++..+...||++.
T Consensus 287 -----l~~i~~~~~~L~~L~l~~c~~~~d~------~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 287 -----LVSIAERCPSLRELDLSGCHGLTDS------GLEALLKNCPNLR 324 (482)
T ss_pred -----HHHHHHhcCcccEEeeecCccchHH------HHHHHHHhCcchh
Confidence 1112346778888888888766331 4444444466554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.6e-07 Score=83.74 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=62.5
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
..||+.++|+++ +++=.+...+-.-...+|+|+.|+++.+. +...+.+. .. ..+++|+.|.++.|
T Consensus 143 k~~~~v~~LdLS-----------~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~-~~-~~l~~lK~L~l~~C- 207 (505)
T KOG3207|consen 143 KILPNVRDLDLS-----------RNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN-TT-LLLSHLKQLVLNSC- 207 (505)
T ss_pred hhCCcceeecch-----------hhhHHhHHHHHHHHHhcccchhccccccc-ccCCcccc-ch-hhhhhhheEEeccC-
Confidence 356777777777 22222222222223456788888887765 55433333 11 35777888888888
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
+++-.....+...+|+|+.|++.++..+-. ... .-.-+..|+.|+|++.+
T Consensus 208 Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~---------~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 208 GLSWKDVQWILLTFPSLEVLYLEANEIILI-KAT---------STKILQTLQELDLSNNN 257 (505)
T ss_pred CCCHHHHHHHHHhCCcHHHhhhhcccccce-ecc---------hhhhhhHHhhccccCCc
Confidence 343222233355678888888877642211 000 01235567777777654
No 31
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.17 E-value=6e-07 Score=87.73 Aligned_cols=72 Identities=22% Similarity=0.191 Sum_probs=39.5
Q ss_pred CCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC-CCcceecccccccccccccCCCCCccceeeccccccccc
Q 038945 75 FFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC-DSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKR 152 (363)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 152 (363)
.+++|+.|.+..|..+....-..+...+++|+.|++.+| ......+... ......+++|+.+++..|..+.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL------LLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh------hhhhhhcCCcCccchhhhhccCc
Confidence 467777777777776665333334666777777777763 2222111100 00133556677777776655444
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2.9e-05 Score=73.03 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=83.1
Q ss_pred HhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHH
Q 038945 99 IRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTR 178 (363)
Q Consensus 99 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~ 178 (363)
+..+++++.|++++| .+..+ ..-.++|+.|.+++|.+++.++...
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sL-------------P~LP~sLtsL~Lsnc~nLtsLP~~L--------------------- 92 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESL-------------PVLPNELTEITIENCNNLTTLPGSI--------------------- 92 (426)
T ss_pred HHHhcCCCEEEeCCC-CCccc-------------CCCCCCCcEEEccCCCCcccCCchh---------------------
Confidence 445788999999988 44432 2223368999999888886653211
Q ss_pred HHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeecc--CcCccccCchhhhhhccccCeEeecc
Q 038945 179 LFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSK--CHGLINLLTLSTSESLVNLERMKMSD 256 (363)
Q Consensus 179 ~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~l~~ 256 (363)
.++|++|++++|..+..+| ++|+.|++.. |..+..+| ++|+.|.+.+
T Consensus 93 -----------------P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~ 141 (426)
T PRK15386 93 -----------------PEGLEKLTVCHCPEISGLP------ESVRSLEIKGSATDSIKNVP--------NGLTSLSINS 141 (426)
T ss_pred -----------------hhhhhheEccCcccccccc------cccceEEeCCCCCcccccCc--------chHhheeccc
Confidence 1688999999987776664 3577777753 22233332 4677777754
Q ss_pred CcchhhhhccCccccccccccc-cccceecccccccccccCCCCcccCCC-CccEEeeccC
Q 038945 257 CKMMEEIIQSQVGEEAEDCIVF-RKLEYLGLDCLPSLTSFCLGNYALEFP-SLEHVVVRQC 315 (363)
Q Consensus 257 c~~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~l~~c 315 (363)
+...... .. ...+ ++|++|.+.+|..+. ++.. +| +|+.|.++.+
T Consensus 142 ~n~~~~~-------~l--p~~LPsSLk~L~Is~c~~i~-LP~~-----LP~SLk~L~ls~n 187 (426)
T PRK15386 142 YNPENQA-------RI--DNLISPSLKTLSLTGCSNII-LPEK-----LPESLQSITLHIE 187 (426)
T ss_pred ccccccc-------cc--ccccCCcccEEEecCCCccc-Cccc-----ccccCcEEEeccc
Confidence 3211100 00 0123 479999999887553 3322 44 7999988664
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.92 E-value=1e-06 Score=80.60 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=41.6
Q ss_pred ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945 217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC 296 (363)
Q Consensus 217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 296 (363)
+..+++|++|++++. .++.+-. +++.....++.|++.++. ++.+-. ..+.++..|+.|++.+. .++.+.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~-~aFe~~a~l~eL~L~~N~-l~~v~~-------~~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIED-GAFEGAAELQELYLTRNK-LEFVSS-------GMFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred HhhcccceEeccCCC-ccchhhh-hhhcchhhhhhhhcCcch-HHHHHH-------HhhhccccceeeeecCC-eeEEEe
Confidence 445666666666553 4444432 334555666666665542 332211 11234556666666653 444444
Q ss_pred CCCcccCCCCccEEeec
Q 038945 297 LGNYALEFPSLEHVVVR 313 (363)
Q Consensus 297 ~~~~~~~~~~L~~L~l~ 313 (363)
.+. +....+|.+|.+-
T Consensus 339 ~~a-F~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 339 PGA-FQTLFSLSTLNLL 354 (498)
T ss_pred ccc-ccccceeeeeehc
Confidence 442 3444455555544
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=2e-05 Score=53.79 Aligned_cols=60 Identities=33% Similarity=0.438 Sum_probs=41.3
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~ 114 (363)
|+|++|+++++. ++.++... + ..+++|++|+++++ +++. .+...+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~-f--~~l~~L~~L~l~~N-~l~~-i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDS-F--SNLPNLETLDLSNN-NLTS-IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTT-T--TTGTTESEEEETSS-SESE-EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHH-H--cCCCCCCEeEccCC-ccCc-cCHHHHcCCCCCCEEeCcCCc
Confidence 467788888874 77766544 2 46788888888866 5554 444447788888888887763
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.80 E-value=4.3e-05 Score=63.95 Aligned_cols=85 Identities=26% Similarity=0.286 Sum_probs=38.2
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
.+.+|+.|+++++. ++.+.. . ..+++|+.|+++++ .++.. ...+...+|+|++|++.++ ++.++..+..
T Consensus 40 ~l~~L~~L~Ls~N~-I~~l~~-l----~~L~~L~~L~L~~N-~I~~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~-- 108 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-ITKLEG-L----PGLPRLKTLDLSNN-RISSI-SEGLDKNLPNLQELYLSNN-KISDLNELEP-- 108 (175)
T ss_dssp T-TT--EEE-TTS---S--TT---------TT--EEE--SS----S--CHHHHHH-TT--EEE-TTS----SCCCCGG--
T ss_pred hhcCCCEEECCCCC-CccccC-c----cChhhhhhcccCCC-CCCcc-ccchHHhCCcCCEEECcCC-cCCChHHhHH--
Confidence 36889999999997 887642 3 37999999999987 56653 3333457999999999874 5666554332
Q ss_pred ccccccCCCCCccceeeccccc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
...+++|+.|++.+.|
T Consensus 109 ------L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 109 ------LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ------GGG-TT--EEE-TT-G
T ss_pred ------HHcCCCcceeeccCCc
Confidence 2368899999998876
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=3e-05 Score=72.89 Aligned_cols=133 Identities=14% Similarity=0.226 Sum_probs=76.7
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccc--
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGE-- 270 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-- 270 (363)
+..+.+++.|++++| .++.+|. ..++|++|.+++|..++.+|.. + .++|++|++.+|..+..++..-..-
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~--L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L 119 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS--I--PEGLEKLTVCHCPEISGLPESVRSLEI 119 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch--h--hhhhhheEccCcccccccccccceEEe
Confidence 334478889999988 6777762 3457999999999888777632 2 3688999999987665443210000
Q ss_pred ---ccccccccc-ccceecccccccccccCCCCcccCCC-CccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 271 ---EAEDCIVFR-KLEYLGLDCLPSLTSFCLGNYALEFP-SLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 271 ---~~~~~~~l~-~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
....+..+| +|+.|.+.++........ ...+| +|++|.+.+|..+. +|..+- .+|+.|+++.+
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcchHhheecccccccccccc---ccccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 000112222 455554432211100000 11243 79999999987654 443322 57888887654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.74 E-value=2.4e-05 Score=65.45 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=41.9
Q ss_pred cCCCccEEEeccCcCccccccccc-CCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945 195 VFANLKSLEISECSQLQKLVPASC-YLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE 273 (363)
Q Consensus 195 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 273 (363)
+...+++|++.++. ++.+ ..+. .+.+|+.|+++++ .++.+.. +..+++|+.|+++++. ++++..
T Consensus 17 n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N~-I~~i~~-------- 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNNR-ISSISE-------- 81 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CH--------
T ss_pred cccccccccccccc-cccc-cchhhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCCC-CCcccc--------
Confidence 33567777777764 3333 2222 4677888888775 4555432 4567788888887753 333210
Q ss_pred cc-ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc---ccCCCcCCCCcceeecccC
Q 038945 274 DC-IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI---FSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 274 ~~-~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~---l~~~~~~~~~L~~L~i~~~ 339 (363)
.+ ..+|+|+.|++.++ .+.++..-.....+|+|+.|++.++|--.. -..-+..+|+|+.||-..-
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 01 24778888888763 555554433355678888888877754321 1122337788888875543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.71 E-value=5.6e-05 Score=51.60 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=40.4
Q ss_pred cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945 279 RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 279 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~ 339 (363)
|+|++|++++| .++.++.+. +..+++|++|+++ +++++.++.+. ..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~-f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS-FSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTT-TTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHH-HcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46777777776 677776653 5667788888886 44666666544 47888888888776
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.47 E-value=7.5e-05 Score=66.36 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+|.++.|+++++.. ..+ ..+..+++|++|++++. .+..+ .+|...+-+++.|.++.+. +++ +..+
T Consensus 306 ~Pkir~L~lS~N~i-~~v-~nLa~L~~L~~LDLS~N-~Ls~~--~Gwh~KLGNIKtL~La~N~-iE~---------LSGL 370 (490)
T KOG1259|consen 306 APKLRRLILSQNRI-RTV-QNLAELPQLQLLDLSGN-LLAEC--VGWHLKLGNIKTLKLAQNK-IET---------LSGL 370 (490)
T ss_pred ccceeEEeccccce-eee-hhhhhcccceEeecccc-hhHhh--hhhHhhhcCEeeeehhhhh-Hhh---------hhhh
Confidence 36666666665542 222 22455666666666653 23322 1334555666666665532 221 1113
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 316 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 316 (363)
+.+=+|.+|++.++ +++.+.....++.+|.|+.+.+.+.|
T Consensus 371 ~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Hhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 33445666666552 33333332224556666666655554
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.32 E-value=0.00028 Score=62.82 Aligned_cols=142 Identities=13% Similarity=0.133 Sum_probs=99.5
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
-..|+.++++++. ++.+-.++.-.|.++.|+++.. ++..+.. ...+++|..|+++++. +..+... -
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~N~-Ls~~~Gw--------h 348 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSGNL-LAECVGW--------H 348 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehh---hhhcccceEeecccch-hHhhhhh--------H
Confidence 3688999999864 5556566677899999999875 4544432 5678999999999864 3322110 1
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccccc--CCCcCCCCcceeecccCCCCCCccccCCcch
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS--QGVVDAPKLNKVKPTEEEDGDDEGCWEGNLN 353 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 353 (363)
..+-+++.|.+.++ .+++++. ...+-+|..|++++. +++.+- .+++++|.|+.+.+.+| ++.-..+-.
T Consensus 349 ~KLGNIKtL~La~N-~iE~LSG---L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~N-----Pl~~~vdYR 418 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIETLSG---LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGN-----PLAGSVDYR 418 (490)
T ss_pred hhhcCEeeeehhhh-hHhhhhh---hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCC-----CccccchHH
Confidence 23668999999883 6676654 455778999999766 555433 68889999999999999 777666655
Q ss_pred HHHHHhhh
Q 038945 354 DTKKKLFN 361 (363)
Q Consensus 354 ~~~~~~~~ 361 (363)
+-.-..|-
T Consensus 419 TKVLa~FG 426 (490)
T KOG1259|consen 419 TKVLARFG 426 (490)
T ss_pred HHHHHHHh
Confidence 54444443
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00011 Score=74.59 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=29.5
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
.+|++|++++-..+..-|... .. ..||+|++|.+.+-.-..+ --..+...+|||..|||+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred HhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecch-hHHHHhhccCccceeecCCC
Confidence 446666666544443334222 11 2566666666655422111 11223455666666666654
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.17 E-value=3.6e-05 Score=73.77 Aligned_cols=184 Identities=18% Similarity=0.172 Sum_probs=98.2
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|.+.-.|-.|+.+.++.+. +..++..+ +.+..|.+|+++.+ ++.. +|.. +..++ |+.|.+++ .++
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~N-qlS~-lp~~-lC~lp-Lkvli~sN-Nkl 155 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSN-QLSH-LPDG-LCDLP-LKVLIVSN-NKL 155 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccc-hhhc-CChh-hhcCc-ceeEEEec-Ccc
Confidence 456677777777788888887766 66666665 57778888888766 4443 4444 55565 78887775 356
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF 196 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l 196 (363)
..++...+ ..+.|..|+++.|. +..+..+.. .+. +++.....-+++ ..-++.+..
T Consensus 156 ~~lp~~ig----------~~~tl~~ld~s~ne-i~slpsql~-----------~l~-slr~l~vrRn~l-~~lp~El~~- 210 (722)
T KOG0532|consen 156 TSLPEEIG----------LLPTLAHLDVSKNE-IQSLPSQLG-----------YLT-SLRDLNVRRNHL-EDLPEELCS- 210 (722)
T ss_pred ccCCcccc----------cchhHHHhhhhhhh-hhhchHHhh-----------hHH-HHHHHHHhhhhh-hhCCHHHhC-
Confidence 55554322 34566667666543 222211111 000 111000011111 111223332
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchh-hhhhccccCeEeeccC
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLS-TSESLVNLERMKMSDC 257 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~l~~L~~L~l~~c 257 (363)
-.|.+|++++ .++..+|..+..+.+|+.|-+.+.| ++.-|..- .-+.+.=-++|++.-|
T Consensus 211 LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 LPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Cceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 2466666663 4566777777777777777776543 44422111 1133445566666655
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.03 E-value=0.00062 Score=65.01 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=47.8
Q ss_pred ccccccceEecccCcCcccccccCcCCCCCCC-CccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFN-NLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~-~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
..++.++.|++.+.. +.+++... ..+. +|+.|++++. .+... |.. ++.+++|+.|+++.+. +.+++...
T Consensus 113 ~~~~~l~~L~l~~n~-i~~i~~~~----~~~~~nL~~L~l~~N-~i~~l-~~~-~~~l~~L~~L~l~~N~-l~~l~~~~- 182 (394)
T COG4886 113 LELTNLTSLDLDNNN-ITDIPPLI----GLLKSNLKELDLSDN-KIESL-PSP-LRNLPNLKNLDLSFND-LSDLPKLL- 182 (394)
T ss_pred hcccceeEEecCCcc-cccCcccc----ccchhhccccccccc-chhhh-hhh-hhccccccccccCCch-hhhhhhhh-
Confidence 344567777777765 66655444 3442 7777777765 34432 111 6677777777777654 44444221
Q ss_pred ccccccccCCCCCccceeecccc
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~ 147 (363)
...+.|+.|++++.
T Consensus 183 ---------~~~~~L~~L~ls~N 196 (394)
T COG4886 183 ---------SNLSNLNNLDLSGN 196 (394)
T ss_pred ---------hhhhhhhheeccCC
Confidence 03556666666653
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.99 E-value=0.00067 Score=64.80 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=64.7
Q ss_pred chhhhhhhcccccc-ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945 36 STIQKCYIEMIGFR-DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 36 ~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~ 114 (363)
..+.+++....... +|+.|+++++. ++.++... ..+++|+.|++.++ ++.. .|.. .+..++|+.|+++++
T Consensus 126 n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~----~~l~~L~~L~l~~N-~l~~-l~~~-~~~~~~L~~L~ls~N- 196 (394)
T COG4886 126 NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL----RNLPNLKNLDLSFN-DLSD-LPKL-LSNLSNLNNLDLSGN- 196 (394)
T ss_pred cccccCccccccchhhcccccccccc-hhhhhhhh----hccccccccccCCc-hhhh-hhhh-hhhhhhhhheeccCC-
Confidence 45566666666664 89999999987 88765344 57999999999998 4555 3432 337889999999985
Q ss_pred CcceecccccccccccccCCCCCccceeeccccc
Q 038945 115 SLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
++..++...+ ...+|+++.+.+-+
T Consensus 197 ~i~~l~~~~~----------~~~~L~~l~~~~N~ 220 (394)
T COG4886 197 KISDLPPEIE----------LLSALEELDLSNNS 220 (394)
T ss_pred ccccCchhhh----------hhhhhhhhhhcCCc
Confidence 4766664211 23447777776654
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.87 E-value=0.00018 Score=69.18 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=84.9
Q ss_pred ccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcc
Q 038945 190 AESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG 269 (363)
Q Consensus 190 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 269 (363)
+.++..+..|+.++++.+. +..+|..+..+ -|+.|-+++ ++++.+|.. ++.++.|..|+++.|. +..++..
T Consensus 114 p~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~ne-i~slpsq--- 184 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKNE-IQSLPSQ--- 184 (722)
T ss_pred chhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEec-CccccCCcc--cccchhHHHhhhhhhh-hhhchHH---
Confidence 4455666777777777654 44444444333 467776665 467777654 5566777777777654 3433333
Q ss_pred ccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+..+.+|+.|.+.. ..+.+++.+ .. .-.|.+|++ .|+++..+|..+.+|..|++|.+..|
T Consensus 185 -----l~~l~slr~l~vrR-n~l~~lp~E--l~-~LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 185 -----LGYLTSLRDLNVRR-NHLEDLPEE--LC-SLPLIRLDF-SCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred -----hhhHHHHHHHHHhh-hhhhhCCHH--Hh-CCceeeeec-ccCceeecchhhhhhhhheeeeeccC
Confidence 45567777777776 356667665 33 334778887 77788888888888888888888777
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.69 E-value=0.00014 Score=65.77 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCccEEEeccCcCc----ccccccccCCCCCCEEeeccCcCccccCc---hhhhhhccccCeEeeccCc
Q 038945 197 ANLKSLEISECSQL----QKLVPASCYLENLATLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 197 ~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~ 258 (363)
+.|+.++++.+..- +-+...+..+++|+.|++++.- .+.-.. ......+++|+.|++.+|.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc
Confidence 56667776654321 1222334566777777776532 111111 1123344566666666664
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.67 E-value=0.0026 Score=40.15 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=14.6
Q ss_pred CccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 78 NLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 78 ~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
+|++|+++++ ++++..+ . ++++++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~-~-l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPP-E-LSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGG-H-GTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCc-h-HhCCCCCCEEEecCC
Confidence 4555555554 3443222 2 445555555555554
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.64 E-value=0.0015 Score=66.52 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=29.1
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEcc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRN 112 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~ 112 (363)
+||+|.+||++++. ++.+ .|+ +.+.+|+.|.+++..-.....-.+ +-++++|+.||++.
T Consensus 171 sFpNL~sLDIS~Tn-I~nl-~GI----S~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 171 SFPNLRSLDISGTN-ISNL-SGI----SRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISR 229 (699)
T ss_pred ccCccceeecCCCC-ccCc-HHH----hccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccc
Confidence 45666666666654 5553 222 356666666665543221111112 44466666666654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.63 E-value=0.0042 Score=39.15 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=29.9
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSA 93 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~ 93 (363)
++|++|+++++. +++++... ..|++|+.|++++| .+++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l----~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPEL----SNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHG----TTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCC-CcccCchH----hCCCCCCEEEecCC-CCCCC
Confidence 478999999997 88877645 68999999999998 46653
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.62 E-value=0.0032 Score=63.76 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=69.7
Q ss_pred hhhhccccccccceEecccCcCcc-cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945 40 KCYIEMIGFRDIENIKLSLFPRLK-EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE 118 (363)
Q Consensus 40 ~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~ 118 (363)
.+|..+..+++|+.|+|+++. +. .+|... +.+++|+.|++++| ++....|.. ++++++|+.|+++++.--..
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNS-IRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCc-ccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCccccc
Confidence 356778889999999999987 54 445444 68999999999998 677667766 88999999999998764444
Q ss_pred ecccccccccccccCCCCCccceeeccccccccc
Q 038945 119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKR 152 (363)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 152 (363)
++..-+ ..+.++..+++.+.+.+..
T Consensus 506 iP~~l~---------~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 506 VPAALG---------GRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CChHHh---------hccccCceEEecCCccccC
Confidence 442110 1233556777777665543
No 51
>PLN03150 hypothetical protein; Provisional
Probab=96.61 E-value=0.0035 Score=63.55 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=38.5
Q ss_pred ccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccc
Q 038945 199 LKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVF 278 (363)
Q Consensus 199 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l 278 (363)
++.|+++++..-..+|..+..+++|+.|+++++.-...+|.. ++.+++|+.|+++++.....++ +.+..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~--~~~l~~L~~LdLs~N~lsg~iP--------~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGSIP--------ESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH--HhCCCCCCEEECCCCCCCCCCc--------hHHhcC
Confidence 445555554433344444555566666666554322233322 4455566666665553222211 113445
Q ss_pred cccceeccccc
Q 038945 279 RKLEYLGLDCL 289 (363)
Q Consensus 279 ~~L~~L~l~~c 289 (363)
++|+.|+++++
T Consensus 490 ~~L~~L~Ls~N 500 (623)
T PLN03150 490 TSLRILNLNGN 500 (623)
T ss_pred CCCCEEECcCC
Confidence 55666665554
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.55 E-value=0.00083 Score=60.98 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=128.6
Q ss_pred ccccccccCCCceeEEEeeecccceeeeccCCCch----hhhhhhccccccccceEecccCcCcccc-cccC-cCCCCCC
Q 038945 3 TFSLGILSTPKLHKVQVTVKEEGELYHREGNLNST----IQKCYIEMIGFRDIENIKLSLFPRLKEI-WHNQ-ALPVSFF 76 (363)
Q Consensus 3 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~----~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~-~l~~~~l 76 (363)
..+..+.+-++|+.++++.-. .|.+... +.-+...+.+++.|++|+||++- +..- +... .+. .++
T Consensus 49 ~i~~~L~~~~~L~~v~~sd~f-------tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~G~~g~~~l~~ll-~s~ 119 (382)
T KOG1909|consen 49 AIAKVLASKKELREVNLSDMF-------TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-FGPKGIRGLEELL-SSC 119 (382)
T ss_pred HHHHHHhhcccceeeehHhhh-------cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-cCccchHHHHHHH-Hhc
Confidence 445556778899999888210 1222222 22244566788999999999875 3310 1000 022 368
Q ss_pred CCccEEEecCCCCCcccCchh------------HHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeec
Q 038945 77 NNLRHLVLDDCKNMSSAIPAN------------LIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRL 144 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~p~~------------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 144 (363)
.+|++|++.+|. +....... .++.-+.|+++....+ .++.-+...... .....+.|+.+++
T Consensus 120 ~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~-----~~~~~~~leevr~ 192 (382)
T KOG1909|consen 120 TDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAE-----AFQSHPTLEEVRL 192 (382)
T ss_pred cCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHH-----HHHhccccceEEE
Confidence 999999999994 43222211 1334567888877653 344332111000 0123466777766
Q ss_pred ccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc----cccccccCC
Q 038945 145 IDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ----KLVPASCYL 220 (363)
Q Consensus 145 ~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~----~l~~~~~~~ 220 (363)
.... +. .. +.. ....++...++|+.|++.++-.-. .+...+..+
T Consensus 193 ~qN~-I~--~e----G~~-------------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 193 SQNG-IR--PE----GVT-------------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred eccc-cc--Cc----hhH-------------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 5331 00 00 000 012234445889999998874322 223456678
Q ss_pred CCCCEEeeccCcCccccCchhhh----hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccc
Q 038945 221 ENLATLEVSKCHGLINLLTLSTS----ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 290 (363)
Q Consensus 221 ~~L~~L~l~~c~~l~~~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 290 (363)
++|+.+.+++|. ++.-...++. ...|+|+.|.+.+|..-.+-... ....+...|.|+.|.+.+|.
T Consensus 241 ~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~----la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA----LAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH----HHHHHhcchhhHHhcCCccc
Confidence 899999999994 3333322222 34689999999887643221000 00012336788888888863
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00053 Score=57.64 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=26.5
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeeccc
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTE 338 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~ 338 (363)
+++++.|.+.+|..+.++..+....-.++|+.|++++|+.+++-.. .+..+++|+.|++++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4444444444444444443333223344455555555555543221 222444455444443
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.002 Score=57.54 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=16.7
Q ss_pred CCCCccEEEecCCCCCccc-CchhHHhhcCCCCEEEEcc
Q 038945 75 FFNNLRHLVLDDCKNMSSA-IPANLIRCLNNLASLEVRN 112 (363)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~~-~p~~~l~~l~~L~~L~l~~ 112 (363)
.+..++++++.++. +++- -...++.++|.|+.|+++.
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccC
Confidence 34455555555542 2111 1233345555555555553
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00024 Score=62.52 Aligned_cols=84 Identities=23% Similarity=0.205 Sum_probs=61.8
Q ss_pred ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccc
Q 038945 48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNA 127 (363)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 127 (363)
+.+.++|+.++|. +.++.... .|+.|+.|.++-+ +++...| +..|++|++|++..+. +.++..+.+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~-I~sldEL~Y--- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNC-IESLDELEY--- 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcc-cccHHHHHH---
Confidence 3567899999997 88866555 8999999999976 5676677 8899999999998643 555544433
Q ss_pred cccccCCCCCccceeeccccccc
Q 038945 128 DKEHLCPLFPKLFSLRLIDLPKL 150 (363)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~L 150 (363)
..++|+|+.|-|...|..
T Consensus 84 -----LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 -----LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred -----HhcCchhhhHhhccCCcc
Confidence 345777777766655543
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.00096 Score=56.15 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=7.4
Q ss_pred CCCCCEEeeccCcCccc
Q 038945 220 LENLATLEVSKCHGLIN 236 (363)
Q Consensus 220 ~~~L~~L~l~~c~~l~~ 236 (363)
.++|+.|++++|+++++
T Consensus 150 ~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchheeeccCCCeech
Confidence 34444444444444444
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.0025 Score=56.32 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=63.3
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+.+.++|+.++|. +.++.. ...++.|+.|.++- ++++.+.+ +..+++|+.||+..+. +.++ +++..+
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~-I~sl------dEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNC-IESL------DELEYL 84 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcc-cccH------HHHHHH
Confidence 3677888888885 444422 24578888888864 45555532 5678888888887542 2221 133445
Q ss_pred ccccccceecccccccccccCCC---CcccCCCCccEEe
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVV 311 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~ 311 (363)
.++|+|+.|.|..++.-..-... .....+|+|++|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 67888888888876654433221 0123467777775
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.29 E-value=0.091 Score=44.54 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=43.9
Q ss_pred ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC--CcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945 48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN--MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL 125 (363)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~--l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 125 (363)
++.|.+|.+.++. ++.+.... . ..+|+|+.|.+.++.- +.+..| +..||.|++|.+-+++ ++.-...
T Consensus 63 l~rL~tLll~nNr-It~I~p~L-~--~~~p~l~~L~LtnNsi~~l~dl~p---La~~p~L~~Ltll~Np-v~~k~~Y--- 131 (233)
T KOG1644|consen 63 LPRLHTLLLNNNR-ITRIDPDL-D--TFLPNLKTLILTNNSIQELGDLDP---LASCPKLEYLTLLGNP-VEHKKNY--- 131 (233)
T ss_pred ccccceEEecCCc-ceeeccch-h--hhccccceEEecCcchhhhhhcch---hccCCccceeeecCCc-hhcccCc---
Confidence 4556666776665 66554443 1 2466677777766421 223333 5556667777666544 2211110
Q ss_pred cccccccCCCCCccceeecccc
Q 038945 126 NADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~~ 147 (363)
-.++.-.+|+|+.|++.+.
T Consensus 132 ---R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 ---RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ---eeEEEEecCcceEeehhhh
Confidence 1112235666777666543
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.073 Score=47.81 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=41.4
Q ss_pred cccCCCccEEEeccCcCcccccccc-cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPAS-CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
+.++|.|+.|++++++- ....... .-..+|+.|.+.+. .+..-...++...+|.++.|.++++.
T Consensus 93 le~lP~l~~LNls~N~L-~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSL-SSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HhcCccceEeeccCCcC-CCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccch
Confidence 56679999999998753 2222222 24679999999774 33222233446678888888877753
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.53 E-value=0.2 Score=42.56 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=47.2
Q ss_pred ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCc-ccCchhHHhhcCCCCEEEEccCC
Q 038945 48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMS-SAIPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~-~~~p~~~l~~l~~L~~L~l~~~~ 114 (363)
+++|+.|.+.+++ +.++..-. +...||+|++|.+-+++--. ..--.+++..+|+|+.||...-.
T Consensus 87 ~p~l~~L~LtnNs-i~~l~dl~--pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 87 LPNLKTLILTNNS-IQELGDLD--PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccccceEEecCcc-hhhhhhcc--hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 5889999999987 77654444 23479999999998875432 22345668889999999987643
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.25 E-value=0.16 Score=44.75 Aligned_cols=88 Identities=27% Similarity=0.298 Sum_probs=50.5
Q ss_pred ccccceEecccCc-CcccccccCcCCCCCCCCccEEEecCCCCC--cccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 48 FRDIENIKLSLFP-RLKEIWHNQALPVSFFNNLRHLVLDDCKNM--SSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 48 ~~~L~~L~l~~~~-~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l--~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
+++|++|.++.+. .+.. .... +. ..+|+|+++++++++.- ...-| +..+++|..|++..|.... .....
T Consensus 64 Lp~LkkL~lsdn~~~~~~-~l~v-l~-e~~P~l~~l~ls~Nki~~lstl~p---l~~l~nL~~Ldl~n~~~~~-l~dyr- 135 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSG-GLEV-LA-EKAPNLKVLNLSGNKIKDLSTLRP---LKELENLKSLDLFNCSVTN-LDDYR- 135 (260)
T ss_pred cchhhhhcccCCcccccc-ccee-hh-hhCCceeEEeecCCccccccccch---hhhhcchhhhhcccCCccc-cccHH-
Confidence 4788999998772 1221 1111 12 35699999999887432 22223 6778888888888876443 11111
Q ss_pred ccccccccCCCCCccceeeccccc
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
..+...+++|+.|+-.+..
T Consensus 136 -----e~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 136 -----EKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred -----HHHHHHhhhhccccccccC
Confidence 1112356777777655443
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.99 E-value=0.02 Score=57.27 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=40.4
Q ss_pred ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945 44 EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 44 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~ 114 (363)
.+..|++|++|||+++. +..+|.-. ...+ +|+.|.++++ -++.... +.++++|+.||++++.
T Consensus 204 ~Lr~l~~LkhLDlsyN~-L~~vp~l~---~~gc-~L~~L~lrnN-~l~tL~g---ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNC-LRHVPQLS---MVGC-KLQLLNLRNN-ALTTLRG---IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHHhcccccccccccch-hccccccc---hhhh-hheeeeeccc-HHHhhhh---HHhhhhhhccchhHhh
Confidence 45567888888888776 77655332 0122 3888888876 3454333 7778888888887643
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.16 E-value=0.22 Score=24.24 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=6.9
Q ss_pred CccEEeeccCCCcccc
Q 038945 306 SLEHVVVRQCPTMKIF 321 (363)
Q Consensus 306 ~L~~L~l~~c~~l~~l 321 (363)
+|+.|++++|. ++.+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45666666653 5544
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.08 E-value=0.2 Score=48.26 Aligned_cols=82 Identities=20% Similarity=0.145 Sum_probs=52.4
Q ss_pred cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
+..+.+|+.|++.++. ++.+.... .++++|++|+++++ .+...-+ +..++.|+.|+++++. +..+..+.
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~~~- 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGNL-ISDISGLE- 159 (414)
T ss_pred cccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheeccCc-chhccCCc-
Confidence 4556778888888776 66644323 46888888888876 4555455 6667778888888753 55544322
Q ss_pred ccccccccCCCCCccceeecccc
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~ 147 (363)
.+++|+.++++++
T Consensus 160 ----------~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 160 ----------SLKSLKLLDLSYN 172 (414)
T ss_pred ----------cchhhhcccCCcc
Confidence 2555666665543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.96 E-value=0.24 Score=25.86 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=12.4
Q ss_pred CccEEeeccCCCcccccCCCc
Q 038945 306 SLEHVVVRQCPTMKIFSQGVV 326 (363)
Q Consensus 306 ~L~~L~l~~c~~l~~l~~~~~ 326 (363)
+|++|++++| +++.+|.++.
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3667777666 6666665543
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.38 E-value=0.063 Score=53.83 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=76.4
Q ss_pred CCccEEEeccCcCcccc-cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccC-cchhhhhccCcccc---
Q 038945 197 ANLKSLEISECSQLQKL-VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDC-KMMEEIIQSQVGEE--- 271 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~--- 271 (363)
++++.|.+-..+.-.-. |..+..|..|++|.+++|+--+..... +-=..|+.|.-.+- ..++.+++.-+++.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~---~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQ---ELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhH---HHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 45555555544432222 556778999999999999644322211 11134555543321 22333332221110
Q ss_pred ------------------c-cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcc
Q 038945 272 ------------------A-EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLN 332 (363)
Q Consensus 272 ------------------~-~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 332 (363)
. +.+.-+|-|+.|+++++ ++.++. . ...+++|++|+++ .+.++.+|.--.-...|+
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~--Lr~l~~LkhLDls-yN~L~~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-N--LRRLPKLKHLDLS-YNCLRHVPQLSMVGCKLQ 235 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-H--HHhcccccccccc-cchhccccccchhhhhhe
Confidence 0 11334677888888874 455554 2 6778999999994 447777775333223489
Q ss_pred eeecccC
Q 038945 333 KVKPTEE 339 (363)
Q Consensus 333 ~L~i~~~ 339 (363)
.|.+.+|
T Consensus 236 ~L~lrnN 242 (1096)
T KOG1859|consen 236 LLNLRNN 242 (1096)
T ss_pred eeeeccc
Confidence 9999888
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.30 E-value=0.21 Score=48.14 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=61.8
Q ss_pred chhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCC
Q 038945 36 STIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDS 115 (363)
Q Consensus 36 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~ 115 (363)
+.+.++...+..+++|++|+++++. ++.+.... .++.|+.|++.++. +..... +..+++|+.+++.++.
T Consensus 105 n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~-----~l~~L~~L~l~~N~-i~~~~~---~~~l~~L~~l~l~~n~- 173 (414)
T KOG0531|consen 105 NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLS-----TLTLLKELNLSGNL-ISDISG---LESLKSLKLLDLSYNR- 173 (414)
T ss_pred cchhhcccchhhhhcchheeccccc-cccccchh-----hccchhhheeccCc-chhccC---CccchhhhcccCCcch-
Confidence 4455555446678999999999987 88755433 67889999999984 444333 5558899999998765
Q ss_pred cceecccccccccccccCCCCCccceeecccc
Q 038945 116 LEEVLHLEELNADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 116 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (363)
+..+... . ...+.+++.+.+.+.
T Consensus 174 i~~ie~~--------~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 174 IVDIEND--------E-LSELISLEELDLGGN 196 (414)
T ss_pred hhhhhhh--------h-hhhccchHHHhccCC
Confidence 3333210 0 125667777776654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.52 E-value=1.3 Score=34.48 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=42.8
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD 86 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 86 (363)
+..+++|+.+.+. ..+..+. .....++.|+.+++.+. +..++... ...+++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~---------------~~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~---F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFP---------------NTIKKIGENAFSNCTSLKSINFPNN--LTSIGDNA---FSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEET---------------ST--EE-TTTTTT-TT-SEEEESST--TSCE-TTT---TTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEEC---------------CCeeEeChhhccccccccccccccc--ccccceee---eecccccccccccc
Confidence 3556777777776 1222222 12345678899988763 55544333 24677899999965
Q ss_pred CCCCcccCchhHHhhcCCCCEEEEcc
Q 038945 87 CKNMSSAIPANLIRCLNNLASLEVRN 112 (363)
Q Consensus 87 c~~l~~~~p~~~l~~l~~L~~L~l~~ 112 (363)
.+.. .+...+..+++|+.+.+..
T Consensus 68 --~~~~-i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 68 --NLKS-IGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --TT-E-E-TTTTTT-TTECEEEETT
T ss_pred --cccc-cccccccccccccccccCc
Confidence 3333 3445577889999999864
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.31 E-value=0.091 Score=41.85 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=33.1
Q ss_pred hhhhhhhcccc-ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEcc
Q 038945 37 TIQKCYIEMIG-FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRN 112 (363)
Q Consensus 37 ~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~ 112 (363)
.++++|..+.. ++.+++|++.++. +.++|... ..++.|+.|+++.++- . ..|.- +..+.+|-.|+..+
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~----Aam~aLr~lNl~~N~l-~-~~p~v-i~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL----AAMPALRSLNLRFNPL-N-AEPRV-IAPLIKLDMLDSPE 132 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhh-hhhchHHH----hhhHHhhhcccccCcc-c-cchHH-HHHHHhHHHhcCCC
Confidence 34444444432 4456666666654 55555554 3566666666665432 2 13332 23355555554443
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.05 E-value=0.4 Score=26.14 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.7
Q ss_pred CCCccEEeeccCCCcccc
Q 038945 304 FPSLEHVVVRQCPTMKIF 321 (363)
Q Consensus 304 ~~~L~~L~l~~c~~l~~l 321 (363)
|++|++|++++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 567888888888887753
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.27 E-value=0.52 Score=41.52 Aligned_cols=62 Identities=27% Similarity=0.336 Sum_probs=33.2
Q ss_pred CCCccEEEeccC--cCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 196 FANLKSLEISEC--SQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 196 l~~L~~L~l~~c--~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
|++|++|.++++ +....+......+++|+++.+++. +++.+....-...+.+|..|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence 367777777766 333333333344577777777664 33333222223455566666666665
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.31 E-value=5 Score=31.05 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=20.2
Q ss_pred ccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeec
Q 038945 194 KVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMS 255 (363)
Q Consensus 194 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 255 (363)
.+...|+.+.+.+ .++.+.. .+..+.+|+.+.+.. .+..++.. .+..+++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~-~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN-AFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT-TTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC--CeeEeChhhcccccccccccccc--ccccccee-eeeccccccccccc
Confidence 3334555555543 2333322 233444556555543 23333321 23344455555553
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=81.72 E-value=0.3 Score=38.97 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCEEeeccCcCccccCc-hhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCc
Q 038945 222 NLATLEVSKCHGLINLLT-LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY 300 (363)
Q Consensus 222 ~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 300 (363)
-+..+++++|+-. .++. ...+.....|...+++++. +++++.. ....+|.++.+++.+ ..+.++|++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~-fk~fp~k-------ft~kf~t~t~lNl~~-neisdvPeE-- 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNG-FKKFPKK-------FTIKFPTATTLNLAN-NEISDVPEE-- 95 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccch-hhhCCHH-------Hhhccchhhhhhcch-hhhhhchHH--
Confidence 3556778887533 2221 1122344566666777753 3433221 112466788888887 477888877
Q ss_pred ccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 301 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 301 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.-.+|.|+.|+++.. .+...|.-+..+.++..|+..++
T Consensus 96 ~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCCC
Confidence 777899999999555 55556666667778888887777
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.67 E-value=5.2 Score=21.43 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=8.2
Q ss_pred cccceEecccCcCccccc
Q 038945 49 RDIENIKLSLFPRLKEIW 66 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~ 66 (363)
++|++|+++++. ++.+|
T Consensus 2 ~~L~~L~L~~N~-l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLP 18 (26)
T ss_pred CCCCEEECCCCc-CCcCC
Confidence 345555555553 44433
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.67 E-value=5.2 Score=21.43 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=8.2
Q ss_pred cccceEecccCcCccccc
Q 038945 49 RDIENIKLSLFPRLKEIW 66 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~ 66 (363)
++|++|+++++. ++.+|
T Consensus 2 ~~L~~L~L~~N~-l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLP 18 (26)
T ss_pred CCCCEEECCCCc-CCcCC
Confidence 345555555553 44433
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.53 E-value=5.6 Score=20.86 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=4.3
Q ss_pred CCccEEEecCC
Q 038945 77 NNLRHLVLDDC 87 (363)
Q Consensus 77 ~~L~~L~l~~c 87 (363)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34445555444
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=33.25 E-value=26 Score=19.15 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=10.5
Q ss_pred cccceEecccCcCccccc
Q 038945 49 RDIENIKLSLFPRLKEIW 66 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~ 66 (363)
++|+.|+++++. ++.+|
T Consensus 2 ~~L~~L~vs~N~-Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQ-LTSLP 18 (26)
T ss_pred cccceeecCCCc-cccCc
Confidence 346677777765 66544
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=29.33 E-value=14 Score=33.24 Aligned_cols=72 Identities=24% Similarity=0.326 Sum_probs=37.2
Q ss_pred hhccccccccceEecccC--cCcc-cccccCc--C-CCCCCCCccEEEecCCCCCcccCc---hhHHhhcCCCCEEEEcc
Q 038945 42 YIEMIGFRDIENIKLSLF--PRLK-EIWHNQA--L-PVSFFNNLRHLVLDDCKNMSSAIP---ANLIRCLNNLASLEVRN 112 (363)
Q Consensus 42 ~~~~~~~~~L~~L~l~~~--~~l~-~~~~~~~--l-~~~~l~~L~~L~l~~c~~l~~~~p---~~~l~~l~~L~~L~l~~ 112 (363)
-..+.+-++|+..+++.. ..++ +++.... + ..-.||+|+.++++++- +....| .+.+++-.+|.+|++.+
T Consensus 51 ~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 51 CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeec
Confidence 344445566777777643 2121 2221110 0 01257778888877763 222222 23455667788888876
Q ss_pred CC
Q 038945 113 CD 114 (363)
Q Consensus 113 ~~ 114 (363)
|.
T Consensus 130 nG 131 (388)
T COG5238 130 NG 131 (388)
T ss_pred CC
Confidence 64
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.36 E-value=19 Score=35.55 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=35.5
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCch-hHHhhcCCCCEEEEccCCCcce
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPA-NLIRCLNNLASLEVRNCDSLEE 118 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~-~~l~~l~~L~~L~l~~~~~l~~ 118 (363)
+++.+..++|+++. +..+..-..+. ...|+|+.|+|+++.......++ .-++. .-|++|.+.+++-.+.
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~ssls-q~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLS-QIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHH-HhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 35667777777765 44433222111 35677888887776222221211 10222 2367777777664443
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=26.28 E-value=45 Score=18.27 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=6.9
Q ss_pred cccceEecccCc
Q 038945 49 RDIENIKLSLFP 60 (363)
Q Consensus 49 ~~L~~L~l~~~~ 60 (363)
++|++|+|+++.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 345666666554
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.87 E-value=66 Score=31.94 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=40.2
Q ss_pred cccccceEecccCcC-cccccccCcCCCCCCCCccEEEecCCCCCcccC-chhHHh----hcCCCCEEEE
Q 038945 47 GFRDIENIKLSLFPR-LKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAI-PANLIR----CLNNLASLEV 110 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~-l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~-p~~~l~----~l~~L~~L~l 110 (363)
..|+|+.|+|+++.+ +...+. +..-....|++|-+.+++-++... +...+. .+|.|..||=
T Consensus 242 ~apklk~L~LS~N~~~~~~~~e---l~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSESE---LDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hcchhheeecccchhhhcchhh---hhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecC
Confidence 469999999999843 222121 222357789999999988776544 222233 6888888764
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=22.90 E-value=37 Score=30.71 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=32.8
Q ss_pred hhhccccccccceEecccCc-Cccccc-ccCcCCCCCCCCccEEEecCCCCCcccCc
Q 038945 41 CYIEMIGFRDIENIKLSLFP-RLKEIW-HNQALPVSFFNNLRHLVLDDCKNMSSAIP 95 (363)
Q Consensus 41 l~~~~~~~~~L~~L~l~~~~-~l~~~~-~~~~l~~~~l~~L~~L~l~~c~~l~~~~p 95 (363)
+...+.+||+|+++++|++- ..+..+ .+. +. .+-..|++|++.+| ++.....
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d-~i-s~~t~l~HL~l~Nn-GlGp~aG 137 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGD-LI-SSSTDLVHLKLNNN-GLGPIAG 137 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHH-HH-hcCCCceeEEeecC-CCCccch
Confidence 44566789999999999875 112111 111 11 35678999999998 4554443
Done!