Query 038945
Match_columns 363
No_of_seqs 124 out of 1998
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 7.9E-20 2.7E-24 168.9 18.9 232 48-339 80-311 (328)
2 2id5_A Lingo-1, leucine rich r 99.8 1.8E-18 6.1E-23 167.7 18.1 145 191-348 194-340 (477)
3 4fmz_A Internalin; leucine ric 99.8 3.1E-18 1.1E-22 159.0 16.5 127 193-339 217-343 (347)
4 3v47_A TOLL-like receptor 5B a 99.7 5.7E-17 1.9E-21 156.0 20.1 130 197-339 275-405 (455)
5 3zyj_A Leucine-rich repeat-con 99.7 6.1E-17 2.1E-21 155.4 20.2 242 37-347 54-298 (440)
6 4eco_A Uncharacterized protein 99.7 1.2E-17 4.2E-22 167.6 15.8 110 4-120 198-321 (636)
7 3vq2_A TLR4, TOLL-like recepto 99.7 3.9E-17 1.3E-21 162.9 18.9 279 8-346 281-563 (606)
8 4fcg_A Uncharacterized protein 99.7 1.8E-17 6.2E-22 153.0 15.3 232 10-314 79-310 (328)
9 3t6q_A CD180 antigen; protein- 99.7 2.5E-17 8.7E-22 164.2 17.4 135 193-339 421-557 (606)
10 3zyi_A Leucine-rich repeat-con 99.7 9E-17 3.1E-21 154.8 20.0 243 37-348 65-310 (452)
11 3rgz_A Protein brassinosteroid 99.7 2.8E-17 9.7E-22 168.5 16.8 279 10-339 267-548 (768)
12 3rgz_A Protein brassinosteroid 99.7 5.9E-17 2E-21 166.1 18.8 84 246-339 631-714 (768)
13 4fmz_A Internalin; leucine ric 99.7 3.1E-17 1.1E-21 152.3 15.0 127 193-339 195-321 (347)
14 1ogq_A PGIP-2, polygalacturona 99.7 5.7E-17 1.9E-21 148.7 14.9 233 40-339 67-301 (313)
15 3t6q_A CD180 antigen; protein- 99.7 2.8E-16 9.5E-21 156.7 20.6 259 45-339 274-533 (606)
16 2id5_A Lingo-1, leucine rich r 99.7 3.2E-16 1.1E-20 151.8 20.3 255 43-339 50-306 (477)
17 3vq2_A TLR4, TOLL-like recepto 99.7 3.5E-16 1.2E-20 156.0 19.7 250 45-339 281-531 (606)
18 3o6n_A APL1; leucine-rich repe 99.7 2.9E-16 1E-20 148.2 18.2 109 9-147 42-151 (390)
19 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-16 4.2E-21 156.4 16.1 141 194-339 321-478 (520)
20 2z80_A TOLL-like receptor 2, v 99.7 9.1E-17 3.1E-21 149.7 14.4 236 44-339 71-311 (353)
21 1xku_A Decorin; proteoglycan, 99.7 6.5E-16 2.2E-20 142.5 19.5 251 39-339 44-303 (330)
22 4ecn_A Leucine-rich repeat pro 99.7 9.3E-17 3.2E-21 165.3 15.1 129 4-147 440-583 (876)
23 4eco_A Uncharacterized protein 99.7 5.7E-17 2E-21 162.7 12.7 271 37-339 194-498 (636)
24 3o6n_A APL1; leucine-rich repe 99.7 4.8E-16 1.6E-20 146.7 17.9 278 8-339 65-349 (390)
25 1o6v_A Internalin A; bacterial 99.7 6.9E-16 2.4E-20 149.1 19.1 124 194-339 218-341 (466)
26 2z63_A TOLL-like receptor 4, v 99.7 1.3E-15 4.6E-20 150.4 21.1 135 193-339 392-528 (570)
27 1xku_A Decorin; proteoglycan, 99.7 2.7E-15 9.2E-20 138.3 21.4 131 197-339 192-329 (330)
28 2z66_A Variable lymphocyte rec 99.7 1.4E-15 4.9E-20 138.6 19.3 245 37-352 18-266 (306)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.9E-16 1.3E-20 154.4 16.4 141 194-339 350-507 (562)
30 3v47_A TOLL-like receptor 5B a 99.7 4.9E-16 1.7E-20 149.4 16.3 106 221-339 275-381 (455)
31 3oja_B Anopheles plasmodium-re 99.7 6.5E-16 2.2E-20 154.0 17.5 278 8-339 71-355 (597)
32 3bz5_A Internalin-J, INLJ; leu 99.7 1.3E-15 4.4E-20 146.9 18.7 264 7-339 59-349 (457)
33 2ft3_A Biglycan; proteoglycan, 99.7 1.7E-15 6E-20 139.7 18.4 104 11-148 53-158 (332)
34 3o53_A Protein LRIM1, AGAP0063 99.7 8.7E-16 3E-20 140.9 16.0 216 46-339 31-247 (317)
35 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-15 3.6E-20 140.2 16.0 225 49-339 50-278 (313)
36 2ft3_A Biglycan; proteoglycan, 99.7 2.6E-15 8.8E-20 138.6 17.5 251 38-339 45-304 (332)
37 2z81_A CD282 antigen, TOLL-lik 99.7 8.8E-16 3E-20 151.2 15.3 109 11-148 25-134 (549)
38 3zyi_A Leucine-rich repeat-con 99.7 3.4E-15 1.2E-19 143.7 19.1 226 12-316 75-301 (452)
39 3zyj_A Leucine-rich repeat-con 99.7 3.4E-15 1.2E-19 143.2 18.8 209 43-316 82-290 (440)
40 3bz5_A Internalin-J, INLJ; leu 99.7 2.6E-15 8.8E-20 144.7 17.8 267 6-339 36-328 (457)
41 4ecn_A Leucine-rich repeat pro 99.6 3.4E-15 1.2E-19 153.7 18.5 130 194-339 694-837 (876)
42 3oja_A Leucine-rich immune mol 99.6 1.6E-15 5.5E-20 147.4 14.8 216 47-339 32-247 (487)
43 2z81_A CD282 antigen, TOLL-lik 99.6 1.3E-15 4.3E-20 150.1 14.1 58 277-339 449-507 (549)
44 1o6v_A Internalin A; bacterial 99.6 1.5E-14 5.1E-19 139.8 21.0 125 193-339 261-385 (466)
45 1ozn_A Reticulon 4 receptor; N 99.6 1.2E-14 4.3E-19 131.0 18.9 131 196-339 104-235 (285)
46 3oja_B Anopheles plasmodium-re 99.6 1.3E-14 4.4E-19 144.6 19.2 255 7-316 94-356 (597)
47 1ziw_A TOLL-like receptor 3; i 99.6 3.6E-14 1.2E-18 143.4 22.5 144 190-345 473-626 (680)
48 1ziw_A TOLL-like receptor 3; i 99.6 1.2E-14 4.1E-19 146.9 18.8 66 43-114 67-132 (680)
49 2ast_B S-phase kinase-associat 99.6 4E-16 1.4E-20 144.0 7.1 208 49-315 70-282 (336)
50 2z7x_B TOLL-like receptor 1, v 99.6 5.8E-15 2E-19 144.4 15.4 110 218-339 321-454 (520)
51 2z66_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 133.9 14.8 227 11-316 27-259 (306)
52 3j0a_A TOLL-like receptor 5; m 99.6 2.6E-14 8.9E-19 148.0 19.5 126 197-339 266-391 (844)
53 3o53_A Protein LRIM1, AGAP0063 99.6 1.5E-15 5.3E-20 139.3 8.5 240 9-339 31-272 (317)
54 3ogk_B Coronatine-insensitive 99.6 5.4E-16 1.9E-20 154.0 5.9 148 182-338 387-547 (592)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.5E-14 8.5E-19 141.5 17.5 112 218-339 350-483 (562)
56 2ast_B S-phase kinase-associat 99.6 6.1E-16 2.1E-20 142.8 5.1 215 42-322 86-309 (336)
57 3g06_A SSPH2 (leucine-rich rep 99.6 7E-14 2.4E-18 139.3 19.8 115 196-339 180-294 (622)
58 2z63_A TOLL-like receptor 4, v 99.6 3.6E-14 1.2E-18 140.1 16.9 229 41-339 274-504 (570)
59 2xwt_C Thyrotropin receptor; s 99.6 6E-14 2.1E-18 123.2 15.7 65 50-119 32-96 (239)
60 1ozn_A Reticulon 4 receptor; N 99.6 5.7E-14 1.9E-18 126.6 15.6 214 38-316 23-236 (285)
61 3oja_A Leucine-rich immune mol 99.6 1.1E-14 3.9E-19 141.4 11.4 238 9-337 31-270 (487)
62 2z80_A TOLL-like receptor 2, v 99.6 2.5E-14 8.7E-19 133.0 12.9 238 8-317 72-313 (353)
63 3j0a_A TOLL-like receptor 5; m 99.5 1.4E-13 4.8E-18 142.5 19.0 106 221-339 266-372 (844)
64 4ay9_X Follicle-stimulating ho 99.5 4.5E-14 1.5E-18 131.3 13.7 235 37-339 20-256 (350)
65 1p9a_G Platelet glycoprotein I 99.5 2.1E-13 7.1E-18 123.5 17.6 200 45-339 6-205 (290)
66 2xwt_C Thyrotropin receptor; s 99.5 6.2E-14 2.1E-18 123.1 13.7 201 77-339 31-236 (239)
67 2z62_A TOLL-like receptor 4, v 99.5 6.3E-13 2.1E-17 119.2 20.3 110 217-339 120-234 (276)
68 3ogk_B Coronatine-insensitive 99.5 2E-15 6.9E-20 149.9 3.2 135 195-339 376-523 (592)
69 1wwl_A Monocyte differentiatio 99.5 8.9E-15 3E-19 133.9 6.6 229 51-339 65-306 (312)
70 2p1m_B Transport inhibitor res 99.5 3.5E-15 1.2E-19 148.2 3.2 148 182-339 381-541 (594)
71 2ca6_A RAN GTPase-activating p 99.5 3.6E-14 1.2E-18 133.7 8.6 261 36-339 19-313 (386)
72 2p1m_B Transport inhibitor res 99.5 2.1E-14 7.1E-19 142.6 6.1 58 195-255 287-346 (594)
73 1jl5_A Outer protein YOPM; leu 99.5 8.4E-13 2.9E-17 127.0 16.5 70 278-358 336-420 (454)
74 1jl5_A Outer protein YOPM; leu 99.5 1.7E-13 5.7E-18 132.0 11.2 248 7-339 6-267 (454)
75 4ay9_X Follicle-stimulating ho 99.5 9.3E-13 3.2E-17 122.4 15.2 225 11-314 29-255 (350)
76 1h6u_A Internalin H; cell adhe 99.5 6.8E-13 2.3E-17 121.1 13.8 189 47-315 39-227 (308)
77 1h6u_A Internalin H; cell adhe 99.4 1.6E-12 5.6E-17 118.6 15.9 196 8-295 37-232 (308)
78 3g06_A SSPH2 (leucine-rich rep 99.4 1.8E-12 6.3E-17 129.0 17.3 111 197-339 161-271 (622)
79 2o6q_A Variable lymphocyte rec 99.4 5.7E-12 1.9E-16 112.7 18.4 79 50-147 17-95 (270)
80 2z62_A TOLL-like receptor 4, v 99.4 4E-12 1.4E-16 113.9 16.8 211 38-315 19-234 (276)
81 3rfs_A Internalin B, repeat mo 99.4 1.9E-12 6.3E-17 116.0 14.6 209 46-330 38-247 (272)
82 4g8a_A TOLL-like receptor 4; l 99.4 6.2E-12 2.1E-16 125.3 19.9 71 275-353 514-586 (635)
83 1z7x_W Ribonuclease inhibitor; 99.4 7.7E-14 2.6E-18 134.2 5.4 139 193-339 166-323 (461)
84 4glp_A Monocyte differentiatio 99.4 9.5E-13 3.2E-17 120.2 10.7 233 49-339 64-304 (310)
85 4g8a_A TOLL-like receptor 4; l 99.4 1.7E-11 5.7E-16 122.2 20.5 114 191-316 463-578 (635)
86 3rfs_A Internalin B, repeat mo 99.4 3.3E-12 1.1E-16 114.4 13.5 213 48-337 18-230 (272)
87 2o6q_A Variable lymphocyte rec 99.4 1.5E-11 5.1E-16 109.9 16.5 179 49-290 37-216 (270)
88 1z7x_W Ribonuclease inhibitor; 99.4 6E-14 2.1E-18 135.0 0.2 300 8-339 24-380 (461)
89 1wwl_A Monocyte differentiatio 99.4 6.3E-13 2.1E-17 121.5 6.8 229 46-339 40-284 (312)
90 1p9a_G Platelet glycoprotein I 99.3 1.3E-11 4.3E-16 111.7 14.0 199 8-289 6-205 (290)
91 3goz_A Leucine-rich repeat-con 99.3 4.1E-12 1.4E-16 118.5 7.2 247 45-339 18-294 (362)
92 4ezg_A Putative uncharacterize 99.3 4.2E-11 1.4E-15 101.8 12.7 56 48-113 43-98 (197)
93 2ca6_A RAN GTPase-activating p 99.3 4.8E-12 1.6E-16 119.0 7.1 274 4-339 24-340 (386)
94 1h6t_A Internalin B; cell adhe 99.3 4.7E-11 1.6E-15 107.9 13.2 167 47-289 44-210 (291)
95 1h6t_A Internalin B; cell adhe 99.2 5.2E-11 1.8E-15 107.7 12.5 170 9-259 43-212 (291)
96 4glp_A Monocyte differentiatio 99.2 6.2E-11 2.1E-15 108.1 12.9 205 47-315 89-304 (310)
97 3m19_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 102.3 14.6 164 38-258 26-190 (251)
98 4ezg_A Putative uncharacterize 99.2 9.1E-11 3.1E-15 99.7 12.6 36 74-113 41-76 (197)
99 1m9s_A Internalin B; cell inva 99.2 9.5E-11 3.2E-15 116.4 13.2 79 47-147 41-119 (605)
100 1m9s_A Internalin B; cell inva 99.2 5.6E-11 1.9E-15 118.1 11.5 170 9-259 40-209 (605)
101 3m19_A Variable lymphocyte rec 99.1 1.5E-09 5.2E-14 95.7 16.3 60 277-339 129-189 (251)
102 3goz_A Leucine-rich repeat-con 99.1 3E-11 1E-15 112.7 4.8 248 11-316 21-295 (362)
103 1xeu_A Internalin C; cellular 99.1 6.6E-10 2.2E-14 98.9 11.9 147 45-258 37-183 (263)
104 2o6s_A Variable lymphocyte rec 99.0 5.1E-09 1.8E-13 89.4 14.6 59 197-258 100-159 (208)
105 3cvr_A Invasion plasmid antige 99.0 3.8E-09 1.3E-13 104.0 15.0 182 50-316 60-241 (571)
106 3e6j_A Variable lymphocyte rec 99.0 7.9E-09 2.7E-13 89.8 13.8 150 51-258 21-170 (229)
107 3sb4_A Hypothetical leucine ri 99.0 3E-09 1E-13 97.7 10.9 102 220-336 225-328 (329)
108 3e6j_A Variable lymphocyte rec 99.0 8.1E-09 2.8E-13 89.7 13.0 129 197-339 40-169 (229)
109 1dce_A Protein (RAB geranylger 98.9 1.1E-11 3.7E-16 122.4 -6.7 121 197-336 441-567 (567)
110 2v70_A SLIT-2, SLIT homolog 2 98.9 1.6E-08 5.6E-13 87.3 14.1 64 193-258 101-164 (220)
111 1xeu_A Internalin C; cellular 98.9 5E-09 1.7E-13 93.1 10.7 147 8-232 37-183 (263)
112 2v9t_B SLIT homolog 2 protein 98.9 7.6E-09 2.6E-13 89.4 11.1 129 197-339 32-162 (220)
113 2ell_A Acidic leucine-rich nuc 98.9 2.5E-09 8.7E-14 88.1 7.2 130 196-339 23-157 (168)
114 2je0_A Acidic leucine-rich nuc 98.9 2.1E-09 7.2E-14 86.7 5.9 129 196-338 16-149 (149)
115 3cvr_A Invasion plasmid antige 98.9 2.7E-08 9.2E-13 97.9 14.7 179 13-291 60-242 (571)
116 2v9t_B SLIT homolog 2 protein 98.8 5.9E-08 2E-12 83.7 13.9 59 49-113 32-90 (220)
117 2ell_A Acidic leucine-rich nuc 98.8 9E-09 3.1E-13 84.8 8.1 60 197-258 95-158 (168)
118 2xot_A Amphoterin-induced prot 98.8 3.1E-08 1.1E-12 92.1 12.4 166 37-258 29-200 (361)
119 1w8a_A SLIT protein; signaling 98.8 5.4E-08 1.9E-12 82.0 11.1 125 200-339 11-136 (192)
120 2xot_A Amphoterin-induced prot 98.8 4.1E-08 1.4E-12 91.3 11.3 111 217-339 84-199 (361)
121 2v70_A SLIT-2, SLIT homolog 2 98.8 4.9E-08 1.7E-12 84.2 11.0 129 197-339 32-163 (220)
122 2je0_A Acidic leucine-rich nuc 98.7 1.5E-08 5.1E-13 81.6 7.0 57 197-255 88-148 (149)
123 2o6s_A Variable lymphocyte rec 98.7 1.6E-07 5.5E-12 80.0 11.9 129 197-339 28-158 (208)
124 2wfh_A SLIT homolog 2 protein 98.7 1.4E-07 4.7E-12 79.7 10.7 123 200-339 13-136 (193)
125 1a9n_A U2A', U2A'; complex (nu 98.7 2.6E-08 8.8E-13 82.7 5.9 133 192-339 14-150 (176)
126 1a9n_A U2A', U2A'; complex (nu 98.6 9.6E-08 3.3E-12 79.2 8.6 82 47-147 17-98 (176)
127 4fdw_A Leucine rich hypothetic 98.5 5E-06 1.7E-10 78.3 19.0 60 50-119 136-195 (401)
128 3sb4_A Hypothetical leucine ri 98.5 7.8E-07 2.7E-11 81.4 13.0 101 196-311 225-327 (329)
129 1w8a_A SLIT protein; signaling 98.5 8.3E-07 2.8E-11 74.7 11.9 127 52-232 11-137 (192)
130 3e4g_A ATP synthase subunit S, 98.5 2.4E-08 8.3E-13 82.4 1.9 90 222-321 62-155 (176)
131 3e4g_A ATP synthase subunit S, 98.5 6.6E-08 2.3E-12 79.8 4.5 91 197-295 61-155 (176)
132 2wfh_A SLIT homolog 2 protein 98.5 7.6E-07 2.6E-11 75.0 10.1 108 11-148 30-137 (193)
133 2o6r_A Variable lymphocyte rec 98.4 2.2E-06 7.6E-11 70.9 11.8 125 199-339 9-134 (177)
134 4b8c_D Glucose-repressible alc 98.4 6.6E-07 2.3E-11 90.8 8.7 110 214-339 217-326 (727)
135 2o6r_A Variable lymphocyte rec 98.4 4.2E-06 1.5E-10 69.1 12.2 54 51-113 9-62 (177)
136 1ds9_A Outer arm dynein; leuci 98.4 1.5E-08 5.3E-13 85.8 -2.9 57 196-253 114-180 (198)
137 4fdw_A Leucine rich hypothetic 98.4 3.3E-05 1.1E-09 72.7 19.5 216 50-339 158-380 (401)
138 1dce_A Protein (RAB geranylger 98.3 9.5E-07 3.2E-11 87.0 8.1 95 39-153 454-548 (567)
139 1ds9_A Outer arm dynein; leuci 98.3 3.4E-08 1.2E-12 83.7 -3.3 127 192-335 43-180 (198)
140 4b8c_D Glucose-repressible alc 98.2 1.8E-06 6.3E-11 87.5 7.2 108 8-148 220-327 (727)
141 2ra8_A Uncharacterized protein 98.1 3.6E-06 1.2E-10 78.1 6.7 180 37-258 127-318 (362)
142 2ra8_A Uncharacterized protein 98.1 1.4E-05 4.8E-10 74.1 10.4 84 245-339 250-340 (362)
143 2ifg_A High affinity nerve gro 98.0 9.8E-06 3.3E-10 74.5 8.1 59 278-339 55-113 (347)
144 2r9u_A Variable lymphocyte rec 98.0 1.2E-05 4.1E-10 66.4 7.7 93 38-148 24-116 (174)
145 3un9_A NLR family member X1; l 98.0 4.6E-07 1.6E-11 84.5 -1.2 36 77-113 101-136 (372)
146 4fs7_A Uncharacterized protein 98.0 0.00023 7.9E-09 66.6 17.1 82 244-339 294-376 (394)
147 3g39_A Variable lymphocyte rec 98.0 1.7E-05 5.8E-10 65.2 7.7 94 37-148 20-113 (170)
148 2r9u_A Variable lymphocyte rec 98.0 4E-05 1.4E-09 63.2 10.0 60 277-339 55-115 (174)
149 3g39_A Variable lymphocyte rec 97.9 6E-05 2E-09 61.8 9.9 60 277-339 52-112 (170)
150 2ifg_A High affinity nerve gro 97.7 9.6E-05 3.3E-09 67.7 8.3 63 193-257 27-90 (347)
151 4fs7_A Uncharacterized protein 97.5 0.00062 2.1E-08 63.6 12.0 60 275-339 293-353 (394)
152 4gt6_A Cell surface protein; l 97.4 0.0044 1.5E-07 57.8 15.5 106 217-339 261-367 (394)
153 3un9_A NLR family member X1; l 97.4 2.4E-05 8.4E-10 72.8 -0.3 136 197-339 101-249 (372)
154 4h09_A Hypothetical leucine ri 97.1 0.046 1.6E-06 50.3 19.1 106 218-339 237-343 (379)
155 4gt6_A Cell surface protein; l 96.6 0.081 2.8E-06 49.0 16.6 128 192-339 260-388 (394)
156 3rw6_A Nuclear RNA export fact 96.4 0.0043 1.5E-07 54.6 5.8 91 46-145 167-259 (267)
157 4h09_A Hypothetical leucine ri 96.1 0.67 2.3E-05 42.3 19.5 116 193-326 236-352 (379)
158 1io0_A Tropomodulin; LRR prote 96.1 0.0017 5.9E-08 53.8 1.4 65 193-258 32-104 (185)
159 3rw6_A Nuclear RNA export fact 95.7 0.0051 1.7E-07 54.1 3.1 63 75-148 168-231 (267)
160 1io0_A Tropomodulin; LRR prote 95.2 0.0089 3.1E-07 49.4 2.7 124 6-148 30-162 (185)
161 3rfe_A Platelet glycoprotein I 91.2 0.36 1.2E-05 37.1 5.6 44 304-353 29-74 (130)
162 3rfe_A Platelet glycoprotein I 86.6 1.2 4.1E-05 34.1 5.5 35 77-113 31-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 71.5 1.5 5.1E-05 36.3 1.6 61 197-258 41-109 (197)
164 1pgv_A TMD-1, tropomodulin TMD 65.2 3.3 0.00011 34.2 2.4 117 218-339 38-167 (197)
165 2lz0_A Uncharacterized protein 25.9 90 0.0031 22.1 4.4 39 274-315 15-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=7.9e-20 Score=168.85 Aligned_cols=232 Identities=17% Similarity=0.230 Sum_probs=174.0
Q ss_pred ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccc
Q 038945 48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNA 127 (363)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 127 (363)
.+.+++|+++++. ++.+|... ..+++|++|+++++ ++. ..|.. ++.+++|++|+++++. +..++..
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~-~lp~~-~~~l~~L~~L~Ls~n~-l~~lp~~----- 145 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLM-ELPDT-MQQFAGLETLTLARNP-LRALPAS----- 145 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCC-CCCSC-GGGGTTCSEEEEESCC-CCCCCGG-----
T ss_pred ccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-Ccc-chhHH-HhccCCCCEEECCCCc-cccCcHH-----
Confidence 4678888888876 77766555 46788888888877 455 35544 6778888888888764 4444321
Q ss_pred cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945 128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC 207 (363)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c 207 (363)
...+++|+.|++++|..+..++..... ......+.++++|+.|++++|
T Consensus 146 -----l~~l~~L~~L~L~~n~~~~~~p~~~~~---------------------------~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 146 -----IASLNRLRELSIRACPELTELPEPLAS---------------------------TDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp -----GGGCTTCCEEEEEEETTCCCCCSCSEE---------------------------EC-CCCEEESTTCCEEEEEEE
T ss_pred -----HhcCcCCCEEECCCCCCccccChhHhh---------------------------ccchhhhccCCCCCEEECcCC
Confidence 235778888888877666554322210 001122456799999999998
Q ss_pred cCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945 208 SQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 287 (363)
Q Consensus 208 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 287 (363)
. +..+|..+..+++|++|+++++ .+..++.. +..+++|+.|++++|.....++. .+..+++|++|+++
T Consensus 194 ~-l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 194 G-IRSLPASIANLQNLKSLKIRNS-PLSALGPA--IHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILK 261 (328)
T ss_dssp C-CCCCCGGGGGCTTCCEEEEESS-CCCCCCGG--GGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECT
T ss_pred C-cCcchHhhcCCCCCCEEEccCC-CCCcCchh--hccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECC
Confidence 5 5577778888999999999987 45566543 67899999999999886654422 35678999999999
Q ss_pred ccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 288 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 288 ~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+|..+..++.. +..+++|++|++++|+.+..+|..+..+++|+.+++..+
T Consensus 262 ~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 262 DCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99888888776 788999999999999999999999999999999999987
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=167.70 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=107.2
Q ss_pred cccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccc
Q 038945 191 ESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGE 270 (363)
Q Consensus 191 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 270 (363)
..+..+++|+.|++++|..+..++.......+|++|+++++ .++.++. ..+..+++|+.|+++++. +..+
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~------- 263 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTI------- 263 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEE-------
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCcc-------
Confidence 35677788999999988888888776666778999999887 5666653 246788999999999875 3322
Q ss_pred cccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCcccc
Q 038945 271 EAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGCW 348 (363)
Q Consensus 271 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~~ 348 (363)
....+..+++|+.|+++++ .+..+.... +..+++|++|+++++ .++.++... ..+++|+.|++++| -.+++.+.|
T Consensus 264 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGG-QLAVVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp CTTSCTTCTTCCEEECCSS-CCSEECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred ChhhccccccCCEEECCCC-ccceECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 1223567899999999986 566554443 677899999999877 777777654 58999999999999 233333333
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=3.1e-18 Score=159.01 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=60.7
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA 272 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 272 (363)
+..+++|+.|++++|. +..++. +..+++|++|++++| .++.++ .+..+++|+.|++++|. +..+
T Consensus 217 ~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~--------- 280 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDI--------- 280 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCC---------
T ss_pred hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCCc-cCCC---------
Confidence 3444555555555553 222222 345555555555554 233321 13455555555555552 2211
Q ss_pred cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+.+..+++|+.|++++|. +....... +..+++|++|++++|+ ++..+. +..+++|++|++++|
T Consensus 281 ~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp GGGGGCTTCSEEECCSSC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred hhhcCCCCCCEEECcCCc-CCCcChhH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 123345566666666653 22222111 3445666666665553 443333 455666666666655
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=5.7e-17 Score=155.99 Aligned_cols=130 Identities=16% Similarity=0.225 Sum_probs=100.9
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
++|+.|+++++......+..+..+++|++|+++++. ++.++. ..+..+++|+.|++++|.. ..+ ....+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l-~~~-------~~~~~~ 344 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNFL-GSI-------DSRMFE 344 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCC-CEE-------CGGGGT
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCcc-CCc-------ChhHhc
Confidence 689999999987666667778889999999999874 555433 2367889999999999853 322 122356
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~ 339 (363)
.+++|++|+++++ .++.+.... +..+++|++|+++++ +++.+|.+. ..+++|+.|++++|
T Consensus 345 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 345 NLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 7899999999997 556554432 677999999999776 788787755 58999999999999
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=6.1e-17 Score=155.42 Aligned_cols=242 Identities=15% Similarity=0.175 Sum_probs=178.6
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|..+. ++++.|+++++. ++.++... + ..+++|++|+++++ ++....+. .+..+++|++|+++++ .+
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~l 124 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-RL 124 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-CC
T ss_pred CcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-cC
Confidence 4555666553 679999999987 77765333 2 57999999999998 56654444 4889999999999986 45
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF 196 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l 196 (363)
..++.. ....+++|+.|+++++. ++.+. ...+..+
T Consensus 125 ~~~~~~---------~~~~l~~L~~L~L~~N~-i~~~~-----------------------------------~~~~~~l 159 (440)
T 3zyj_A 125 TTIPNG---------AFVYLSKLKELWLRNNP-IESIP-----------------------------------SYAFNRI 159 (440)
T ss_dssp SSCCTT---------TSCSCSSCCEEECCSCC-CCEEC-----------------------------------TTTTTTC
T ss_pred CeeCHh---------HhhccccCceeeCCCCc-ccccC-----------------------------------HHHhhhC
Confidence 554421 13467899999998764 33321 1235667
Q ss_pred CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
++|+.|+++++..+..++. .+..+++|++|+++++ .++.++. +..+++|+.|+++++. +..+ ....+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~-l~~~-------~~~~~ 227 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGNH-LSAI-------RPGSF 227 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTSC-CCEE-------CTTTT
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCCc-cCcc-------Chhhh
Confidence 9999999999888887765 5678999999999997 5666664 5688999999999984 3333 12235
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCccc
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGC 347 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~ 347 (363)
..+++|+.|++.++ .++.+.... +..+++|++|+++++ +++.++... ..+++|+.|++++| -.|++.+.
T Consensus 228 ~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 228 QGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp TTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred ccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 67899999999986 566665543 667899999999877 777777655 58999999999999 23334433
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=1.2e-17 Score=167.59 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=70.9
Q ss_pred cccccccCCCceeEEEeeecccc-----eeeeccCCCchhhhhhhccc--cccccceEecccCcCcccccccCcCCCCCC
Q 038945 4 FSLGILSTPKLHKVQVTVKEEGE-----LYHREGNLNSTIQKCYIEMI--GFRDIENIKLSLFPRLKEIWHNQALPVSFF 76 (363)
Q Consensus 4 ~~~~~~~~~~L~~l~~~~~~~~~-----~~~~~~~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l 76 (363)
++..+..+++|++|+++...... .|-.. ......+.+|..+. .+++|++|++++|.-...+|... +.+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT-TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTC
T ss_pred CCHHHhcccCCCEEECcCCcccccccccccccc-ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH----hcC
Confidence 45667889999999999321110 00000 00001112788888 88999999999887455556555 578
Q ss_pred CCccEEEecCCCCCcc-cCchhHHhhc------CCCCEEEEccCCCcceec
Q 038945 77 NNLRHLVLDDCKNMSS-AIPANLIRCL------NNLASLEVRNCDSLEEVL 120 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~-~~p~~~l~~l------~~L~~L~l~~~~~l~~~~ 120 (363)
++|++|++++|..+.+ ..|.. ++.+ ++|++|++++|. +..++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~-l~~ip 321 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNN-LKTFP 321 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSC-CSSCC
T ss_pred CCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCc-CCccC
Confidence 8999999988854665 56655 5554 888888888764 44554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=3.9e-17 Score=162.89 Aligned_cols=279 Identities=15% Similarity=0.022 Sum_probs=168.0
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
+..+++|+.|.+... .+..+| .+..+++|++|++++|. ++.+| . -.+++|++|++++|
T Consensus 281 ~~~l~~L~~L~l~~~--------------~~~~l~-~l~~~~~L~~L~l~~n~-l~~lp--~----~~l~~L~~L~l~~n 338 (606)
T 3vq2_A 281 FHCLANVSAMSLAGV--------------SIKYLE-DVPKHFKWQSLSIIRCQ-LKQFP--T----LDLPFLKSLTLTMN 338 (606)
T ss_dssp CGGGTTCSEEEEESC--------------CCCCCC-CCCTTCCCSEEEEESCC-CSSCC--C----CCCSSCCEEEEESC
T ss_pred cccCCCCCEEEecCc--------------cchhhh-hccccccCCEEEccccc-Ccccc--c----CCCCccceeeccCC
Confidence 567788888888821 112233 44556677777777766 45443 1 14666666666666
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN 167 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~ 167 (363)
..... .+ +..+++|++|+++++. +..+..... ....+++|+.|+++++. +..++.... .
T Consensus 339 ~~~~~-~~---~~~l~~L~~L~ls~n~-l~~~~~~~~-------~~~~~~~L~~L~L~~n~-l~~~~~~~~--------~ 397 (606)
T 3vq2_A 339 KGSIS-FK---KVALPSLSYLDLSRNA-LSFSGCCSY-------SDLGTNSLRHLDLSFNG-AIIMSANFM--------G 397 (606)
T ss_dssp SSCEE-CC---CCCCTTCCEEECCSSC-EEEEEECCH-------HHHCCSCCCEEECCSCS-EEEECCCCT--------T
T ss_pred cCccc-hh---hccCCCCCEEECcCCc-cCCCcchhh-------hhccCCcccEeECCCCc-cccchhhcc--------C
Confidence 44332 22 4456666666666553 322210000 01245556666655543 222211000 0
Q ss_pred cccchhhHHHHHHhhhhhhhhcc-cccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccc-cCchhhhhh
Q 038945 168 FIRIKSNLMTRLFALQHLLKENA-ESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLIN-LLTLSTSES 245 (363)
Q Consensus 168 ~~~l~~~L~l~~~~~~~l~~~~~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~ 245 (363)
++++. . +.+ ...++....+ ..+..+++|+.|++++|......+..+..+++|++|++++|.--.. .+. .++.
T Consensus 398 l~~L~-~--L~l-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~ 471 (606)
T 3vq2_A 398 LEELQ-H--LDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VFAN 471 (606)
T ss_dssp CTTCC-E--EEC-TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--CCTT
T ss_pred CCCCC-e--eEC-CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--hhcc
Confidence 01110 0 000 0011111112 3567789999999999987666777788899999999999854332 332 3678
Q ss_pred ccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC
Q 038945 246 LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 325 (363)
Q Consensus 246 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 325 (363)
+++|+.|++++|.. ..+ ....+..+++|++|++++| .+..+.... +..+++|++|++++| +++.+|..+
T Consensus 472 l~~L~~L~Ls~n~l-~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~p~~~ 540 (606)
T 3vq2_A 472 TTNLTFLDLSKCQL-EQI-------SWGVFDTLHRLQLLNMSHN-NLLFLDSSH-YNQLYSLSTLDCSFN-RIETSKGIL 540 (606)
T ss_dssp CTTCCEEECTTSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCSCEEGGG-TTTCTTCCEEECTTS-CCCCEESCG
T ss_pred CCCCCEEECCCCcC-Ccc-------ChhhhcccccCCEEECCCC-cCCCcCHHH-ccCCCcCCEEECCCC-cCcccCHhH
Confidence 89999999999853 322 1223567899999999997 455543222 677899999999887 588999888
Q ss_pred cCCC-CcceeecccC-CCCCCcc
Q 038945 326 VDAP-KLNKVKPTEE-EDGDDEG 346 (363)
Q Consensus 326 ~~~~-~L~~L~i~~~-~~~~~~~ 346 (363)
..++ +|+.+++++| -.+++++
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCSSTT
T ss_pred hhhcccCcEEEccCCCcccCCcc
Confidence 8887 5999999999 3444443
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=1.8e-17 Score=152.96 Aligned_cols=232 Identities=22% Similarity=0.282 Sum_probs=179.5
Q ss_pred cCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945 10 STPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN 89 (363)
Q Consensus 10 ~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 89 (363)
..++++.|+++ +..+..+|..+..+++|++|+++++. +..+|... +.+++|++|++++| .
T Consensus 79 ~~~~l~~L~L~--------------~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~----~~l~~L~~L~Ls~n-~ 138 (328)
T 4fcg_A 79 TQPGRVALELR--------------SVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM----QQFAGLETLTLARN-P 138 (328)
T ss_dssp TSTTCCEEEEE--------------SSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG----GGGTTCSEEEEESC-C
T ss_pred cccceeEEEcc--------------CCCchhcChhhhhCCCCCEEECCCCC-ccchhHHH----hccCCCCEEECCCC-c
Confidence 45889999999 13344678888889999999999987 87777665 68999999999998 5
Q ss_pred CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccc
Q 038945 90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFI 169 (363)
Q Consensus 90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~ 169 (363)
+.. .|.. ++.+++|++|++++|.....++..-.... .......+++|+.|+++++ +++.+
T Consensus 139 l~~-lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~l---------------- 198 (328)
T 4fcg_A 139 LRA-LPAS-IASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEWT-GIRSL---------------- 198 (328)
T ss_dssp CCC-CCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC--CCCEEESTTCCEEEEEEE-CCCCC----------------
T ss_pred ccc-CcHH-HhcCcCCCEEECCCCCCccccChhHhhcc-chhhhccCCCCCEEECcCC-CcCcc----------------
Confidence 663 5655 88999999999999887776654211000 0001224889999999876 33332
Q ss_pred cchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcccc
Q 038945 170 RIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNL 249 (363)
Q Consensus 170 ~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 249 (363)
+..+..+++|+.|++++|. +..++..+..+++|++|++++|.....+|.. +..+++|
T Consensus 199 --------------------p~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L 255 (328)
T 4fcg_A 199 --------------------PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPL 255 (328)
T ss_dssp --------------------CGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCC
T ss_pred --------------------hHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCC
Confidence 2335667999999999986 4567777888999999999999888877654 6789999
Q ss_pred CeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeecc
Q 038945 250 ERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 314 (363)
Q Consensus 250 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 314 (363)
+.|++++|..+..++. .+..+++|++|++++|+.+..++.. ...+++|+.+.+..
T Consensus 256 ~~L~L~~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPL--------DIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCT--------TGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECCG
T ss_pred CEEECCCCCchhhcch--------hhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCCH
Confidence 9999999987665432 2567999999999999999999887 88899999998753
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=2.5e-17 Score=164.21 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=88.1
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccc-cCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLIN-LLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE 271 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (363)
+..+++|+.|++++|......+..+..+++|++|+++++.--.. ++....+..+++|+.|++++|.. ..+ .
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~-------~ 492 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSI-------D 492 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-CEE-------C
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-Ccc-------C
Confidence 56677888888887765444455566778888888887743221 22223456778888888888753 222 1
Q ss_pred ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccccc-CCCcCCCCcceeecccC
Q 038945 272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~i~~~ 339 (363)
...+..+++|+.|+++++ .+....... ...+++| +|++++| .++.++ ..+..+++|+.+++++|
T Consensus 493 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHN-RLTSSSIEA-LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCGGGGGG-GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred hhhhccccCCCEEECCCC-ccCcCChhH-hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence 223556788888888886 444443322 5667788 8888777 444444 34568889999999999
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=9e-17 Score=154.79 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=177.4
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|..+. +++++|+++++. ++.++... + ..+++|++|+++++ ++....+.. +..+++|++|+++++. +
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l 135 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENN-IQMIQADT-F--RHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDNW-L 135 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-C
T ss_pred CcCccCCCCC--CCccEEECcCCc-CceECHHH-c--CCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCCc-C
Confidence 3444555442 689999999987 77754332 1 57999999999998 566655444 8889999999999864 5
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF 196 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l 196 (363)
..++.. ....+++|+.|+++++. ++.+. ...+..+
T Consensus 136 ~~~~~~---------~~~~l~~L~~L~L~~N~-l~~~~-----------------------------------~~~~~~l 170 (452)
T 3zyi_A 136 TVIPSG---------AFEYLSKLRELWLRNNP-IESIP-----------------------------------SYAFNRV 170 (452)
T ss_dssp SBCCTT---------TSSSCTTCCEEECCSCC-CCEEC-----------------------------------TTTTTTC
T ss_pred CccChh---------hhcccCCCCEEECCCCC-cceeC-----------------------------------HhHHhcC
Confidence 544321 13468899999998764 33321 1235667
Q ss_pred CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
++|+.|++++|..+..++. .+..+++|++|+++++ .++.++. +..+++|+.|+++++.. ..+ ....+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l-~~~-------~~~~~ 238 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN---LTPLVGLEELEMSGNHF-PEI-------RPGSF 238 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC---CTTCTTCCEEECTTSCC-SEE-------CGGGG
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc---ccccccccEEECcCCcC-ccc-------Ccccc
Confidence 9999999999988888865 4678999999999987 5666654 56889999999999853 222 12235
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC-CCCCCcccc
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE-EDGDDEGCW 348 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~-~~~~~~~~~ 348 (363)
..+++|+.|++.++ .+..+.... +..+++|++|+++++ +++.++... ..+++|+.|++++| -.+++.+.|
T Consensus 239 ~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 239 HGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred cCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence 67899999999986 566665443 667899999999877 778777654 48999999999999 334444443
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=2.8e-17 Score=168.46 Aligned_cols=279 Identities=11% Similarity=0.001 Sum_probs=165.3
Q ss_pred cCCCceeEEEeeecccceeeeccCCCchhhhhhhcccc-ccccceEecccCcCcc-cccccCcCCCCCCCCccEEEecCC
Q 038945 10 STPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIG-FRDIENIKLSLFPRLK-EIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 10 ~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
.+++|++|+++.. .+. ..+|..+.. +++|++|+++++. +. .++... +.+++|++|++++|
T Consensus 267 ~l~~L~~L~L~~n----------~l~---~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~----~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 267 PLKSLQYLSLAEN----------KFT---GEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFF----GSCSLLESLALSSN 328 (768)
T ss_dssp CCTTCCEEECCSS----------EEE---ESCCCCSCTTCTTCSEEECCSSE-EEECCCGGG----GGCTTCCEEECCSS
T ss_pred ccCCCCEEECcCC----------ccC---CccCHHHHhhcCcCCEEECcCCc-CCCccchHH----hcCCCccEEECCCC
Confidence 6889999998821 111 133444444 4778888888776 44 333333 46778888888777
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCC-ccceeecccccccccccCcccchhhhhhh
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFP-KLFSLRLIDLPKLKRFCNFTGNIIELLEC 166 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~L~~l~~~~~~~L~~l~~ 166 (363)
++.+..|...+..+++|++|++++|.-...++.. ...++ +|+.|+++++.--..+...... .
T Consensus 329 -~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~----------l~~l~~~L~~L~Ls~N~l~~~~~~~~~~------~ 391 (768)
T 3rgz_A 329 -NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES----------LTNLSASLLTLDLSSNNFSGPILPNLCQ------N 391 (768)
T ss_dssp -EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT----------HHHHTTTCSEEECCSSEEEEECCTTTTC------S
T ss_pred -cccCcCCHHHHhcCCCCCEEeCcCCccCccccHH----------HHhhhcCCcEEEccCCCcCCCcChhhhh------c
Confidence 3444456555777888888888776422222211 01222 5666666554211111000000 0
Q ss_pred ccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhc
Q 038945 167 NFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESL 246 (363)
Q Consensus 167 ~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 246 (363)
.++++. . +. ....+++...+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.-...+|.. +..+
T Consensus 392 ~~~~L~-~--L~-L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l 465 (768)
T 3rgz_A 392 PKNTLQ-E--LY-LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--LMYV 465 (768)
T ss_dssp TTCCCC-E--EE-CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGC
T ss_pred ccCCcc-E--EE-CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH--HcCC
Confidence 000000 0 00 0111112223445667788888888888655566667777888888888887544444432 5677
Q ss_pred cccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc
Q 038945 247 VNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV 326 (363)
Q Consensus 247 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 326 (363)
++|+.|++++|.....+ ...+..+++|++|++++|.-...++.. +..+++|++|++++|.-...+|..+.
T Consensus 466 ~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEI--------PSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp TTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CCceEEEecCCcccCcC--------CHHHhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHc
Confidence 88888888887543222 223556788888888887544345544 66788888888888755557777888
Q ss_pred CCCCcceeecccC
Q 038945 327 DAPKLNKVKPTEE 339 (363)
Q Consensus 327 ~~~~L~~L~i~~~ 339 (363)
.+++|+.|++++|
T Consensus 536 ~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 536 DCRSLIWLDLNTN 548 (768)
T ss_dssp GCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 8888888888877
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=5.9e-17 Score=166.09 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=49.0
Q ss_pred ccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC
Q 038945 246 LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 325 (363)
Q Consensus 246 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 325 (363)
+++|+.|+++++.....+ +..+..++.|+.|+++++.--..++.. +..+++|+.|+++++.--..+|..+
T Consensus 631 l~~L~~LdLs~N~l~g~i--------p~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYI--------PKEIGSMPYLFILNLGHNDISGSIPDE--VGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp SBCCCEEECCSSCCBSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccccEEECcCCcccccC--------CHHHhccccCCEEeCcCCccCCCCChH--HhCCCCCCEEECCCCcccCcCChHH
Confidence 345555555555422222 222455666777777665433345544 5666777777776664444666666
Q ss_pred cCCCCcceeecccC
Q 038945 326 VDAPKLNKVKPTEE 339 (363)
Q Consensus 326 ~~~~~L~~L~i~~~ 339 (363)
..+++|+.|++++|
T Consensus 701 ~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 701 SALTMLTEIDLSNN 714 (768)
T ss_dssp GGCCCCSEEECCSS
T ss_pred hCCCCCCEEECcCC
Confidence 77777777777766
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=3.1e-17 Score=152.27 Aligned_cols=127 Identities=10% Similarity=0.161 Sum_probs=86.9
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA 272 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 272 (363)
+..+++|+.++++++.. ...+. +..+++|++|++++| .++.++. +..+++|+.|++++|. +..+
T Consensus 195 ~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--------- 258 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQI-TDITP-VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQ-ISDI--------- 258 (347)
T ss_dssp GGGCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCC---------
T ss_pred ccCCCccceeecccCCC-CCCch-hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCc-cCCC---------
Confidence 55566777777766642 22222 456778888888776 3444432 5677888888888774 2221
Q ss_pred cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+.+..+++|++|++++| .++.++. ...+++|++|++++|.--...+..+..+++|+.|++++|
T Consensus 259 ~~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp GGGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred hhHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 23556889999999987 5565532 667899999999888543344455678999999999998
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=5.7e-17 Score=148.65 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=160.0
Q ss_pred hhhhccccccccceEecccCcCcc-cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945 40 KCYIEMIGFRDIENIKLSLFPRLK-EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE 118 (363)
Q Consensus 40 ~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~ 118 (363)
.+|..+..+++|++|+++++.++. .+|... ..+++|++|+++++ ++....|.. +..+++|++|+++++.-...
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l----~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~ 140 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEESC
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhH----hcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCCc
Confidence 356677778889999998533344 444444 57888999999887 455456655 78888999999887642212
Q ss_pred ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC-
Q 038945 119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA- 197 (363)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~- 197 (363)
++.. ...+++|+.|+++++. +.. ..+..+..++
T Consensus 141 ~p~~----------~~~l~~L~~L~L~~N~-l~~-----------------------------------~~p~~l~~l~~ 174 (313)
T 1ogq_A 141 LPPS----------ISSLPNLVGITFDGNR-ISG-----------------------------------AIPDSYGSFSK 174 (313)
T ss_dssp CCGG----------GGGCTTCCEEECCSSC-CEE-----------------------------------ECCGGGGCCCT
T ss_pred CChH----------HhcCCCCCeEECcCCc-ccC-----------------------------------cCCHHHhhhhh
Confidence 2211 2357888888888763 221 1123345556
Q ss_pred CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945 198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV 277 (363)
Q Consensus 198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 277 (363)
.|+.|+++++......+..+..+. |+.|+++++. ++.... ..+..+++|+.|+++++...... ..+..
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~ 242 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDAS-VLFGSDKNTQKIHLAKNSLAFDL---------GKVGL 242 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCG-GGCCTTSCCSEEECCSSEECCBG---------GGCCC
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCC-HHHhcCCCCCEEECCCCceeeec---------Ccccc
Confidence 899999999876556666666676 9999999874 443322 33678899999999988642211 11456
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++|++|+++++.--..++.. +..+++|++|+++++.--..+|.. ..+++|+.+++.+|
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred cCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 789999999987433355544 677899999999887433356655 88999999999998
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=2.8e-16 Score=156.69 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=159.4
Q ss_pred cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
+..+++|++|+++++. ++++|... ..+++|++|++++| .+....|.. +..+++|++|+++++.....++..
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l----~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~-- 344 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGL----VGLSTLKKLVLSAN-KFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTG-- 344 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSC----CSCTTCCEEECTTC-CCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSS--
T ss_pred hccccCCCEEeccCCc-cCCCChhh----cccccCCEEECccC-CcCcCchhh-hhccCcCCEEECCCCCcccccchh--
Confidence 5567888888888886 77766655 57888888888887 455444433 777888888888877533233211
Q ss_pred ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI 204 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l 204 (363)
....+++|+.|+++++. +........ .+ ..++++. . +.+ ...++....+..+..+++|+.|++
T Consensus 345 -------~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~----~~l~~L~-~--L~l-~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 345 -------CLENLENLRELDLSHDD-IETSDCCNL-QL----RNLSHLQ-S--LNL-SYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp -------TTTTCTTCCEEECCSSC-CCEEEESTT-TT----TTCTTCC-E--EEC-CSCSCEEECTTTTTTCTTCSEEEC
T ss_pred -------hhhccCcCCEEECCCCc-cccccCcch-hc----ccCCCCC-E--EEC-CCCcCCcCCHHHhcCCccCCeEEC
Confidence 12356777777777653 222110000 00 0111111 0 000 111122222445677788999999
Q ss_pred ccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945 205 SECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY 283 (363)
Q Consensus 205 ~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~ 283 (363)
+++......+. .+..+++|+.|++++|. +...+. ..+..+++|+.|++++|......+. ....+..+++|+.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEI 480 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCE
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccE
Confidence 88864433333 36678899999998874 333322 2356788999999988864321110 1123567889999
Q ss_pred ecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 284 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 284 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
|++++| .++.+.... +..+++|++|++++|.--...|..+..+++| .|++++|
T Consensus 481 L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 481 LVLSFC-DLSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp EECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred EECCCC-ccCccChhh-hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 999987 455554332 6678899999998874444455677788999 9999988
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=3.2e-16 Score=151.77 Aligned_cols=255 Identities=16% Similarity=0.132 Sum_probs=153.1
Q ss_pred hccccccccceEecccCcCccccc-ccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecc
Q 038945 43 IEMIGFRDIENIKLSLFPRLKEIW-HNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLH 121 (363)
Q Consensus 43 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~ 121 (363)
..+..+++|++|+++++. ++.+. ... ..+++|++|+++++ ++.. .|...+..+++|++|+++++. +..+..
T Consensus 50 ~~~~~l~~L~~L~L~~n~-i~~~~~~~~----~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-i~~~~~ 121 (477)
T 2id5_A 50 DEFASFPHLEELELNENI-VSAVEPGAF----NNLFNLRTLGLRSN-RLKL-IPLGVFTGLSNLTKLDISENK-IVILLD 121 (477)
T ss_dssp TTTTTCTTCCEEECTTSC-CCEECTTTT----TTCTTCCEEECCSS-CCCS-CCTTSSTTCTTCCEEECTTSC-CCEECT
T ss_pred hHccCCCCCCEEECCCCc-cCEeChhhh----hCCccCCEEECCCC-cCCc-cCcccccCCCCCCEEECCCCc-cccCCh
Confidence 345566777777777765 55542 222 46777777777776 3454 343446667777777777654 333211
Q ss_pred cccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccE
Q 038945 122 LEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKS 201 (363)
Q Consensus 122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~ 201 (363)
.....+++|+.|+++++. +..+....- ..++++. .| .+ ...+++......+..+++|+.
T Consensus 122 ---------~~~~~l~~L~~L~l~~n~-l~~~~~~~~-------~~l~~L~-~L--~l-~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 122 ---------YMFQDLYNLKSLEVGDND-LVYISHRAF-------SGLNSLE-QL--TL-EKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp ---------TTTTTCTTCCEEEECCTT-CCEECTTSS-------TTCTTCC-EE--EE-ESCCCSSCCHHHHTTCTTCCE
T ss_pred ---------hHccccccCCEEECCCCc-cceeChhhc-------cCCCCCC-EE--EC-CCCcCcccChhHhcccCCCcE
Confidence 012346666666666542 222111000 0001111 00 00 000111111223566788888
Q ss_pred EEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccc
Q 038945 202 LEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKL 281 (363)
Q Consensus 202 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L 281 (363)
|+++++..-...+..+..+++|+.|++++|+.+..++.. .....+|+.|++++|. ++.+. ...+..+++|
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L 250 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCN-LTAVP-------YLAVRHLVYL 250 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSC-CCSCC-------HHHHTTCTTC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc--cccCccccEEECcCCc-ccccC-------HHHhcCcccc
Confidence 888887644433445677888999999888877777654 2334589999998874 33221 1124568999
Q ss_pred ceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945 282 EYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 282 ~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~ 339 (363)
+.|+++++ .++.++... +..+++|++|+++++ .++.+ +..+..+++|+.|++++|
T Consensus 251 ~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 251 RFLNLSYN-PISTIEGSM-LHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CEEECCSS-CCCEECTTS-CTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS
T ss_pred CeeECCCC-cCCccChhh-ccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC
Confidence 99999986 466665543 667899999999877 55544 556779999999999998
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=3.5e-16 Score=155.98 Aligned_cols=250 Identities=15% Similarity=0.098 Sum_probs=171.4
Q ss_pred cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
+..+++|++|+++++. ++.++ .. ..+++|++|++++|.. .. .| . + .+++|++|+++++..+..+.
T Consensus 281 ~~~l~~L~~L~l~~~~-~~~l~-~l----~~~~~L~~L~l~~n~l-~~-lp-~-~-~l~~L~~L~l~~n~~~~~~~---- 345 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVS-IKYLE-DV----PKHFKWQSLSIIRCQL-KQ-FP-T-L-DLPFLKSLTLTMNKGSISFK---- 345 (606)
T ss_dssp CGGGTTCSEEEEESCC-CCCCC-CC----CTTCCCSEEEEESCCC-SS-CC-C-C-CCSSCCEEEEESCSSCEECC----
T ss_pred cccCCCCCEEEecCcc-chhhh-hc----cccccCCEEEcccccC-cc-cc-c-C-CCCccceeeccCCcCccchh----
Confidence 6678999999999997 77766 33 4789999999999954 44 55 3 5 89999999999986555432
Q ss_pred ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI 204 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l 204 (363)
...+++|+.|+++++. +....... .....++++. .| .+.. ..+. ..+..+..+++|+.|++
T Consensus 346 --------~~~l~~L~~L~ls~n~-l~~~~~~~-----~~~~~~~~L~-~L--~L~~-n~l~-~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 346 --------KVALPSLSYLDLSRNA-LSFSGCCS-----YSDLGTNSLR-HL--DLSF-NGAI-IMSANFMGLEELQHLDF 406 (606)
T ss_dssp --------CCCCTTCCEEECCSSC-EEEEEECC-----HHHHCCSCCC-EE--ECCS-CSEE-EECCCCTTCTTCCEEEC
T ss_pred --------hccCCCCCEEECcCCc-cCCCcchh-----hhhccCCccc-Ee--ECCC-Cccc-cchhhccCCCCCCeeEC
Confidence 3478999999998763 22210000 0001122222 00 0111 1111 12356777899999999
Q ss_pred ccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945 205 SECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY 283 (363)
Q Consensus 205 ~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~ 283 (363)
+++......+ ..+..+++|++|++++|......+. .+..+++|+.|++++|.....+ ....+..+++|+.
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLTSLNTLKMAGNSFKDNT-------LSNVFANTTNLTF 477 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCE
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchh--hhcCCCCCCEEECCCCcCCCcc-------hHHhhccCCCCCE
Confidence 9887544444 4567889999999998864443332 3678899999999998643322 1223567899999
Q ss_pred ecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 284 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 284 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
|++++| .++...... +..+++|++|++++|.-....|..+..+++|+.|++++|
T Consensus 478 L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 478 LDLSKC-QLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EECCCC-cCCccChhh-hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 999997 555554432 677899999999888444444778889999999999999
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=2.9e-16 Score=148.17 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=64.4
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhc-cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIE-MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
..+++++.+.+.. ..+..+|.. +..+++|++|+++++. ++.++... + ..+++|++|++++|
T Consensus 42 ~~l~~l~~l~l~~--------------~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~L~~n 103 (390)
T 3o6n_A 42 ITLNNQKIVTFKN--------------STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA-F--AYAHTIQKLYMGFN 103 (390)
T ss_dssp GGGCCCSEEEEES--------------CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS
T ss_pred cccCCceEEEecC--------------CchhhCChhHhcccccCcEEECCCCc-ccccChhh-c--cCCCCcCEEECCCC
Confidence 3567777777771 233344443 3456778888888776 66654322 1 46777888888776
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccc
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (363)
.+....|. .++.+++|++|+++++. +..++.. ....+++|+.|+++++
T Consensus 104 -~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~l~~~---------~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 104 -AIRYLPPH-VFQNVPLLTVLVLERND-LSSLPRG---------IFHNTPKLTTLSMSNN 151 (390)
T ss_dssp -CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS
T ss_pred -CCCcCCHH-HhcCCCCCCEEECCCCc-cCcCCHH---------HhcCCCCCcEEECCCC
Confidence 45543343 36777778888877753 4444321 0124566666666654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=156.41 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=92.0
Q ss_pred ccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCc-hhhhhhccccCeEeeccCcchhhhhccC--ccc
Q 038945 194 KVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLT-LSTSESLVNLERMKMSDCKMMEEIIQSQ--VGE 270 (363)
Q Consensus 194 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~ 270 (363)
..+++|+.|+++++......+..+..+++|+.|+++++. ++.++. ...+..+++|+.|++++|.....++... ...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 466778888888776555456666777888888887763 333221 1235567777777777765322122110 000
Q ss_pred c----------c--cccccc-cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeec
Q 038945 271 E----------A--EDCIVF-RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP 336 (363)
Q Consensus 271 ~----------~--~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i 336 (363)
. . .....+ ++|+.|++++| .++.++.. ...+++|++|++++| +++.+|.+ +..+++|+.|++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 0 0 001112 57888888876 56666665 568999999999887 78888887 668999999999
Q ss_pred ccC
Q 038945 337 TEE 339 (363)
Q Consensus 337 ~~~ 339 (363)
++|
T Consensus 476 ~~N 478 (520)
T 2z7x_B 476 HTN 478 (520)
T ss_dssp CSS
T ss_pred cCC
Confidence 999
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=9.1e-17 Score=149.67 Aligned_cols=236 Identities=15% Similarity=0.145 Sum_probs=141.7
Q ss_pred ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccc
Q 038945 44 EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLE 123 (363)
Q Consensus 44 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 123 (363)
.+..+++|++|+++++. ++.++... ...+++|++|+++++ ++.. .+...++.+++|++|+++++. +..++..
T Consensus 71 ~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~l~~~- 142 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNG-INTIEEDS---FSSLGSLEHLDLSYN-YLSN-LSSSWFKPLSSLTFLNLLGNP-YKTLGET- 142 (353)
T ss_dssp TTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSS-CCHHHHTTCTTCSEEECTTCC-CSSSCSS-
T ss_pred HhccCCCCCEEECCCCc-cCccCHhh---cCCCCCCCEEECCCC-cCCc-CCHhHhCCCccCCEEECCCCC-CcccCch-
Confidence 34556677777777664 55543221 135667777777666 3443 344446667777777776653 3333210
Q ss_pred cccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEE
Q 038945 124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLE 203 (363)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~ 203 (363)
.....+++|+.|+++++..+..+. ...+..+++|+.|+
T Consensus 143 -------~~~~~l~~L~~L~l~~n~~~~~~~-----------------------------------~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 143 -------SLFSHLTKLQILRVGNMDTFTKIQ-----------------------------------RKDFAGLTFLEELE 180 (353)
T ss_dssp -------CSCTTCTTCCEEEEEESSSCCEEC-----------------------------------TTTTTTCCEEEEEE
T ss_pred -------hhhccCCCCcEEECCCCccccccC-----------------------------------HHHccCCCCCCEEE
Confidence 012356677777776664444321 22345668888888
Q ss_pred eccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945 204 ISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY 283 (363)
Q Consensus 204 l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~ 283 (363)
++++......+..+..+++|++|+++++. ++.++. .+...+++|+.|+++++.. ...... ........+.++.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~l-~~~~~~----~l~~~~~~~~l~~ 253 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE-IFVDVTSSVECLELRDTDL-DTFHFS----ELSTGETNSLIKK 253 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHH-HHHHHTTTEEEEEEESCBC-TTCCCC----------CCCCCCE
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCc-cccchh-hhhhhcccccEEECCCCcc-cccccc----ccccccccchhhc
Confidence 88886544446667778888888888764 455442 2345678888888888753 222111 1111122344555
Q ss_pred ecccccc----cccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945 284 LGLDCLP----SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 284 L~l~~c~----~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~ 339 (363)
+++.++. .+..++.. ...+++|++|++++| +++.+|.++ ..+++|+.|++++|
T Consensus 254 l~L~~~~l~~~~l~~l~~~--l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKL--LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp EEEESCBCCHHHHHHHHHH--HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccccccCcchhhhHHH--HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 5555431 12223332 566899999999877 788899886 69999999999999
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=6.5e-16 Score=142.47 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=157.7
Q ss_pred hhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945 39 QKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE 118 (363)
Q Consensus 39 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~ 118 (363)
..+|..+ .+.+++|+++++. ++.++... + ..+++|++|++++| ++....|.. ++.+++|++|+++++. +..
T Consensus 44 ~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~ 114 (330)
T 1xku_A 44 EKVPKDL--PPDTALLDLQNNK-ITEIKDGD-F--KNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQ-LKE 114 (330)
T ss_dssp CSCCCSC--CTTCCEEECCSSC-CCCBCTTT-T--TTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CSB
T ss_pred cccCccC--CCCCeEEECCCCc-CCEeChhh-h--ccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCCc-CCc
Confidence 3444433 2678899998886 77765432 1 47889999999887 566555554 7888999999998764 554
Q ss_pred ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhh--hhcccccccC
Q 038945 119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLL--KENAESNKVF 196 (363)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~--~~~~~~l~~l 196 (363)
++. ..+++|+.|+++++. +..+.... + ..++++. .|. + ....+. ......+..+
T Consensus 115 l~~------------~~~~~L~~L~l~~n~-l~~~~~~~---~----~~l~~L~-~L~--l-~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 115 LPE------------KMPKTLQELRVHENE-ITKVRKSV---F----NGLNQMI-VVE--L-GTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp CCS------------SCCTTCCEEECCSSC-CCBBCHHH---H----TTCTTCC-EEE--C-CSSCCCGGGBCTTGGGGC
T ss_pred cCh------------hhcccccEEECCCCc-ccccCHhH---h----cCCcccc-EEE--C-CCCcCCccCcChhhccCC
Confidence 432 123677777776652 22211000 0 0111111 000 0 000111 1123456777
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
++|+.|+++++. +..++... +++|++|+++++. ++.++. ..+..+++|+.|+++++.. ..+ ....+.
T Consensus 171 ~~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~-------~~~~~~ 237 (330)
T 1xku_A 171 KKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNSI-SAV-------DNGSLA 237 (330)
T ss_dssp TTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSCC-CEE-------CTTTGG
T ss_pred CCcCEEECCCCc-cccCCccc--cccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCCCcC-cee-------Chhhcc
Confidence 899999998875 44555443 3889999998874 555433 2366889999999998753 222 112355
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-------CCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-------DAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-------~~~~L~~L~i~~~ 339 (363)
.+++|++|+++++ .++.++.. ...+++|++|+++++ .++.++.... ..++++.+++.+|
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecC
Confidence 6889999999987 56677665 677899999999776 5666654332 3478899999999
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=9.3e-17 Score=165.32 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=76.4
Q ss_pred cccccccCCCceeEEEeeecccc-----eeeeccCCCchhhhhhhccc--cccccceEecccCcCcccccccCcCCCCCC
Q 038945 4 FSLGILSTPKLHKVQVTVKEEGE-----LYHREGNLNSTIQKCYIEMI--GFRDIENIKLSLFPRLKEIWHNQALPVSFF 76 (363)
Q Consensus 4 ~~~~~~~~~~L~~l~~~~~~~~~-----~~~~~~~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l 76 (363)
++.++..+++|+.|+++...... .|.. ...+..-..+|..+. .+++|++|++++|.-...+|... ..+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~-~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l----~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL----YDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG----GGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccc-cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH----hCC
Confidence 56678889999999998321111 0000 000000113677776 78888888888886455555444 578
Q ss_pred CCccEEEecCCCCCcc-cCchhHHhhcC-------CCCEEEEccCCCcceecccccccccccccCCCCCccceeecccc
Q 038945 77 NNLRHLVLDDCKNMSS-AIPANLIRCLN-------NLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~-~~p~~~l~~l~-------~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (363)
++|++|++++|..+.+ ..|.. ++.++ +|++|++++|. +..++.... ...+++|+.|+++++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~--------l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS--------LQKMVKLGLLDCVHN 583 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH--------HTTCTTCCEEECTTS
T ss_pred CCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc-CCccCChhh--------hhcCCCCCEEECCCC
Confidence 8888888888754664 45554 44444 88888888764 445443000 124556666666554
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=5.7e-17 Score=162.75 Aligned_cols=271 Identities=10% Similarity=0.066 Sum_probs=172.7
Q ss_pred hhhhhhhccccccccceEecccCcCccc------------------ccccCcCCCC--CCCCccEEEecCCCCCcccCch
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKE------------------IWHNQALPVS--FFNNLRHLVLDDCKNMSSAIPA 96 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~l~~~--~l~~L~~L~l~~c~~l~~~~p~ 96 (363)
.+..+|..+..+++|++|+++++. ++. +|... + .+++|++|++++|. +.+..|.
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~-l~~~~p~ 267 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCP-NLTKLPT 267 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCT-TCSSCCT
T ss_pred CCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCc-CCccChH
Confidence 455588889999999999999998 777 66666 5 79999999999984 4555675
Q ss_pred hHHhhcCCCCEEEEccCCCcc--eeccccc-ccccccccCCCCCccceeecccccccccccC--cccchhhhhhhccccc
Q 038945 97 NLIRCLNNLASLEVRNCDSLE--EVLHLEE-LNADKEHLCPLFPKLFSLRLIDLPKLKRFCN--FTGNIIELLECNFIRI 171 (363)
Q Consensus 97 ~~l~~l~~L~~L~l~~~~~l~--~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~--~~~~~L~~l~~~~~~l 171 (363)
. ++++++|++|+++++..+. .++..-+ .. ....+++|+.|+++++. ++.++. ... .++++
T Consensus 268 ~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----~~~~l~~L~~L~L~~n~-l~~ip~~~~l~--------~l~~L 332 (636)
T 4eco_A 268 F-LKALPEMQLINVACNRGISGEQLKDDWQALA-----DAPVGEKIQIIYIGYNN-LKTFPVETSLQ--------KMKKL 332 (636)
T ss_dssp T-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-----HSGGGGTCCEEECCSSC-CSSCCCHHHHT--------TCTTC
T ss_pred H-HhcCCCCCEEECcCCCCCccccchHHHHhhh-----ccccCCCCCEEECCCCc-CCccCchhhhc--------cCCCC
Confidence 5 8899999999999986343 2332110 00 01235788888888763 333322 110 01111
Q ss_pred hhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCC-CCEEeeccCcCccccCchhhhhhccccC
Q 038945 172 KSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLEN-LATLEVSKCHGLINLLTLSTSESLVNLE 250 (363)
Q Consensus 172 ~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 250 (363)
. . +. ....++....+ .+..+++|+.|+++++. +..+|..+..+++ |++|+++++. ++.+|.......+++|+
T Consensus 333 ~-~--L~-L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 333 G-M--LE-CLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp C-E--EE-CCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEE
T ss_pred C-E--Ee-CcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccC
Confidence 1 0 00 01111221222 66777888888888875 4477777778888 9999998874 55666431122345889
Q ss_pred eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCC--
Q 038945 251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-- 328 (363)
Q Consensus 251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-- 328 (363)
.|++++|.....++.. -.........+++|++|+++++ .++.++... ...+++|++|++++| .++.+|......
T Consensus 406 ~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGN-MLTEIPKNSLKDEN 481 (636)
T ss_dssp EEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSS-CCSBCCSSSSEETT
T ss_pred EEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCC-CCCCcCHHHhcccc
Confidence 9998887643322111 0000000114668999999986 566666541 334899999999776 666788766532
Q ss_pred ------CCcceeecccC
Q 038945 329 ------PKLNKVKPTEE 339 (363)
Q Consensus 329 ------~~L~~L~i~~~ 339 (363)
++|+.|++++|
T Consensus 482 ~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp EECTTGGGCCEEECCSS
T ss_pred ccccccCCccEEECcCC
Confidence 28999999998
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=4.8e-16 Score=146.68 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=157.7
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD 86 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 86 (363)
+..+++|++|+++. . .+..++ ..+..+++|++|+++++. ++.++... ...+++|++|++++
T Consensus 65 ~~~l~~L~~L~L~~----------n----~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 65 LDSFRQVELLNLND----------L----QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLER 126 (390)
T ss_dssp HHHCCCCSEEECTT----------S----CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCS
T ss_pred hcccccCcEEECCC----------C----cccccChhhccCCCCcCEEECCCCC-CCcCCHHH---hcCCCCCCEEECCC
Confidence 36688999999882 1 122222 245567888888888876 66644332 14678888888888
Q ss_pred CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh-
Q 038945 87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE- 165 (363)
Q Consensus 87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~- 165 (363)
| ++.. .|..+++.+++|++|+++++. +..++.. ....+++|+.|+++++. ++.+....-+.+..+.
T Consensus 127 n-~l~~-l~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 127 N-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIEDD---------TFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANV 193 (390)
T ss_dssp S-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTT---------TTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEEC
T ss_pred C-ccCc-CCHHHhcCCCCCcEEECCCCc-cCccChh---------hccCCCCCCEEECCCCc-CCccccccccccceeec
Confidence 7 4554 555546778888888888764 3333210 12356677777776542 2222111111111111
Q ss_pred --hccccch--hhHH-HHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch
Q 038945 166 --CNFIRIK--SNLM-TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL 240 (363)
Q Consensus 166 --~~~~~l~--~~L~-l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 240 (363)
.....+. +.++ +.+ ...++.. . ....+++|+.|+++++.. ... ..+..+++|++|+++++. ++..+.
T Consensus 194 ~~n~l~~~~~~~~L~~L~l-~~n~l~~--~-~~~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~- 265 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDA-SHNSINV--V-RGPVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNE-LEKIMY- 265 (390)
T ss_dssp CSSCCSEEECCSSCSEEEC-CSSCCCE--E-ECCCCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSC-CCEEES-
T ss_pred ccccccccCCCCcceEEEC-CCCeeee--c-cccccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCc-CCCcCh-
Confidence 0000000 0000 000 0000000 0 011235677777777653 232 345677888888888763 444322
Q ss_pred hhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc
Q 038945 241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 320 (363)
Q Consensus 241 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 320 (363)
..+..+++|+.|+++++. ++.+.. ....+++|+.|+++++ .++.++.. ...+++|++|++++| .++.
T Consensus 266 ~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N-~i~~ 332 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHN-SIVT 332 (390)
T ss_dssp GGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSS-CCCC
T ss_pred hHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCC-ccce
Confidence 235677888888888764 332211 1245788888888886 56666554 566788999998776 4665
Q ss_pred ccCCCcCCCCcceeecccC
Q 038945 321 FSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 321 l~~~~~~~~~L~~L~i~~~ 339 (363)
++ +..+++|+.|++++|
T Consensus 333 ~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 333 LK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CC--CCTTCCCSEEECCSS
T ss_pred eC--chhhccCCEEEcCCC
Confidence 54 567888999999988
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=6.9e-16 Score=149.15 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=68.2
Q ss_pred ccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945 194 KVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE 273 (363)
Q Consensus 194 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 273 (363)
..+++|+.|++++|. +..+ ..+..+++|+.|++++|. +...+. +..+++|+.|++++|.. ..+ .
T Consensus 218 ~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l-~~~---------~ 281 (466)
T 1o6v_A 218 GILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQI-SNI---------S 281 (466)
T ss_dssp GGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCC-CCC---------G
T ss_pred cccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCCcc-Ccc---------c
Confidence 334455555555443 2222 123345555555555542 222221 34455555555555432 111 1
Q ss_pred ccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+..+++|+.|++++| .++.++. ...+++|++|++++| .++..+. +..+++|+.|++++|
T Consensus 282 ~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 282 PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS
T ss_pred cccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC
Confidence 1345777888888775 3444432 456788888888777 4554433 568888888888888
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.3e-15 Score=150.45 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=100.7
Q ss_pred cccCCCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945 193 NKVFANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE 271 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (363)
+..+++|+.|++++|......+ ..+..+++|++|++++|.-....+ ..+..+++|+.|++++|...... .
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-------~ 462 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENF-------L 462 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGE-------E
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCcccc-------c
Confidence 6677999999999986443333 356788999999999985443333 23678999999999998743211 1
Q ss_pred ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945 272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE 339 (363)
Q Consensus 272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~ 339 (363)
...+..+++|+.|++++| .++.+.... +..+++|++|++++| +++.++. .+..+++|+.|++++|
T Consensus 463 p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhhhcccCCCEEECCCC-ccccCChhh-hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 223567899999999997 455553332 677899999999887 6776665 4669999999999999
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=2.7e-15 Score=138.31 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=92.0
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
++|+.|+++++..-...+..+..+++|++|+++++. ++.++. ..+..+++|+.|++++|. +..++. .+.
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~--------~l~ 260 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNNK-LVKVPG--------GLA 260 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSSC-CSSCCT--------TTT
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCCCEEECCCCc-CccCCh--------hhc
Confidence 789999999987444445677889999999999874 555543 236788999999999985 333322 255
Q ss_pred cccccceecccccccccccCCCCcc-----cCCCCccEEeeccCCCcc--cccCCCcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYA-----LEFPSLEHVVVRQCPTMK--IFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~-----~~~~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+++|++|+++++ .++.++..... ...+.++.+++.+++-.. ..|.....+++++.+++++|
T Consensus 261 ~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 6899999999986 56666554311 124689999998876432 23345557889999999876
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.4e-15 Score=138.55 Aligned_cols=245 Identities=16% Similarity=0.074 Sum_probs=171.5
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCccc--CchhHHhhcCCCCEEEEccCC
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSA--IPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~--~p~~~l~~l~~L~~L~l~~~~ 114 (363)
.+..+|..+ .++|++|+++++. ++.++... + ..+++|++|+++++ ++... .+.. +..+++|++|+++++.
T Consensus 18 ~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 18 GLTSVPTGI--PSSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred CcccCCCCC--CCCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCc
Confidence 344455543 3689999999987 88766543 1 47899999999988 44432 1344 6679999999999874
Q ss_pred CcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccc
Q 038945 115 SLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNK 194 (363)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~ 194 (363)
+..++.. ...+++|+.|+++++. ++.+.. ...+.
T Consensus 90 -i~~l~~~----------~~~l~~L~~L~l~~n~-l~~~~~----------------------------------~~~~~ 123 (306)
T 2z66_A 90 -VITMSSN----------FLGLEQLEHLDFQHSN-LKQMSE----------------------------------FSVFL 123 (306)
T ss_dssp -EEEEEEE----------EETCTTCCEEECTTSE-EESSTT----------------------------------TTTTT
T ss_pred -cccChhh----------cCCCCCCCEEECCCCc-cccccc----------------------------------chhhh
Confidence 5544321 2368899999998753 333211 12355
Q ss_pred cCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcc-ccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945 195 VFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI-NLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE 273 (363)
Q Consensus 195 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 273 (363)
.+++|+.|+++++......+..+..+++|++|+++++.--. ..+. .+..+++|+.|++++|.. ..+ ...
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l-~~~-------~~~ 193 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQL-EQL-------SPT 193 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCC-CEE-------CTT
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCCc-CCc-------CHH
Confidence 67899999999997555555667789999999999875332 2332 367889999999999853 322 122
Q ss_pred ccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCC-CcceeecccCCCCCCccccCCcc
Q 038945 274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAP-KLNKVKPTEEEDGDDEGCWEGNL 352 (363)
Q Consensus 274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~i~~~~~~~~~~~~~~~~ 352 (363)
.+..+++|+.|+++++ .++.++... +..+++|++|+++++.-....+..+..++ +|+.|++++| ++..+.++
T Consensus 194 ~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N-----~~~~~c~~ 266 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-----DFACTCEH 266 (306)
T ss_dssp TTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC-----CEECSGGG
T ss_pred HhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC-----CeecccCh
Confidence 3567899999999996 456555432 56689999999988854445556777775 9999999999 55444443
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=3.9e-16 Score=154.43 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=89.0
Q ss_pred ccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch-hhhhhccccCeEeeccCcchhhhhccCcc--c
Q 038945 194 KVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL-STSESLVNLERMKMSDCKMMEEIIQSQVG--E 270 (363)
Q Consensus 194 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~ 270 (363)
..+++|+.|+++++......+..+..+++|+.|+++++ .++.++.. ..+..+++|+.|+++++.....++...-. .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 45567777777776544445555666777777777665 34443321 12456667777777665432212110000 0
Q ss_pred ------------cccccccc-cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeec
Q 038945 271 ------------EAEDCIVF-RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP 336 (363)
Q Consensus 271 ------------~~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i 336 (363)
.......+ ++|+.|+++++ .++.++.. ...+++|++|+++++ +++.+|.+ +..+++|+.|++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence 00001123 58888988886 67777776 558899999999776 78888887 678999999999
Q ss_pred ccC
Q 038945 337 TEE 339 (363)
Q Consensus 337 ~~~ 339 (363)
++|
T Consensus 505 ~~N 507 (562)
T 3a79_B 505 HDN 507 (562)
T ss_dssp CSC
T ss_pred cCC
Confidence 999
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.68 E-value=4.9e-16 Score=149.43 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCc
Q 038945 221 ENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY 300 (363)
Q Consensus 221 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 300 (363)
++|+.|+++++.- ...+. ..+..+++|+.|++++|.. ..+ ....+..+++|++|+++++ .++.+....
T Consensus 275 ~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~- 342 (455)
T 3v47_A 275 SGVKTCDLSKSKI-FALLK-SVFSHFTDLEQLTLAQNEI-NKI-------DDNAFWGLTHLLKLNLSQN-FLGSIDSRM- 342 (455)
T ss_dssp SCCCEEECCSSCC-CEECT-TTTTTCTTCCEEECTTSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCCEECGGG-
T ss_pred cCceEEEecCccc-cccch-hhcccCCCCCEEECCCCcc-ccc-------ChhHhcCcccCCEEECCCC-ccCCcChhH-
Confidence 6889999988753 33322 2367889999999998863 222 1223567899999999997 556554432
Q ss_pred ccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945 301 ALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 301 ~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~ 339 (363)
+..+++|++|++++| .++.+ |..+..+++|++|++++|
T Consensus 343 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 343 FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence 667899999999888 55555 667789999999999998
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=6.5e-16 Score=153.95 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=158.1
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD 86 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 86 (363)
+..+++|++|+++. .. +..++ ..+..+++|++|+++++. +..++... + +.+++|++|++++
T Consensus 71 ~~~l~~L~~L~L~~----------n~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~L~~ 132 (597)
T 3oja_B 71 LDSFRQVELLNLND----------LQ----IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV-F--QNVPLLTVLVLER 132 (597)
T ss_dssp HHHCCCCSEEECTT----------SC----CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCS
T ss_pred HccCCCCcEEECCC----------CC----CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH-H--cCCCCCCEEEeeC
Confidence 35688999999882 11 22232 345667888888888876 66654332 1 4678888888888
Q ss_pred CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh-
Q 038945 87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE- 165 (363)
Q Consensus 87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~- 165 (363)
| .+.. .|..+++.+++|++|++++|. +..++. .....+++|+.|+++++. +..+....-+.|..+.
T Consensus 133 n-~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 133 N-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIED---------DTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANV 199 (597)
T ss_dssp S-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCT---------TTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEEC
T ss_pred C-CCCC-CCHHHhccCCCCCEEEeeCCc-CCCCCh---------hhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhc
Confidence 7 4554 454546788888888888764 433321 012356777777776652 2222111111111111
Q ss_pred --hccccch--hhHH-HHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch
Q 038945 166 --CNFIRIK--SNLM-TRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL 240 (363)
Q Consensus 166 --~~~~~l~--~~L~-l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 240 (363)
.....+. +.|. +.+ ....+. ..+ ....++|+.|++++|.. ... ..+..+++|+.|+++++. +...++
T Consensus 200 ~~n~l~~l~~~~~L~~L~l-s~n~l~--~~~-~~~~~~L~~L~L~~n~l-~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~- 271 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDA-SHNSIN--VVR-GPVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNE-LEKIMY- 271 (597)
T ss_dssp CSSCCSEEECCTTCSEEEC-CSSCCC--EEE-CSCCSCCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSC-CCEEES-
T ss_pred ccCccccccCCchhheeec-cCCccc--ccc-cccCCCCCEEECCCCCC-CCC-hhhccCCCCCEEECCCCc-cCCCCH-
Confidence 0000000 0000 000 000000 000 01124677777776642 222 445677888888888764 433322
Q ss_pred hhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc
Q 038945 241 STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 320 (363)
Q Consensus 241 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 320 (363)
..+..+++|+.|++++|. +..+.. ....+++|+.|++++| .+..++.. ...+++|+.|++++| .++.
T Consensus 272 ~~~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~--~~~l~~L~~L~L~~N-~l~~ 338 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHN-SIVT 338 (597)
T ss_dssp GGGTTCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSS-CCCC
T ss_pred HHhcCccCCCEEECCCCC-CCCCCc--------ccccCCCCcEEECCCC-CCCccCcc--cccCCCCCEEECCCC-CCCC
Confidence 225677888888888764 232211 1345788899988886 45566554 566888999999777 4555
Q ss_pred ccCCCcCCCCcceeecccC
Q 038945 321 FSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 321 l~~~~~~~~~L~~L~i~~~ 339 (363)
++ +..+++|+.|++++|
T Consensus 339 ~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 339 LK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CC--CCTTCCCSEEECCSS
T ss_pred cC--hhhcCCCCEEEeeCC
Confidence 54 567889999999988
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-15 Score=146.85 Aligned_cols=264 Identities=15% Similarity=0.099 Sum_probs=144.5
Q ss_pred ccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945 7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD 86 (363)
Q Consensus 7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 86 (363)
++..+++|++|+++. ..+ ..++ +..+++|++|+++++. ++.++ . +.+++|++|++++
T Consensus 59 ~l~~l~~L~~L~Ls~----------n~l----~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~----~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 59 GIEKLTGLTKLICTS----------NNI----TTLD--LSQNTNLTYLACDSNK-LTNLD--V----TPLTKLTYLNCDT 115 (457)
T ss_dssp TGGGCTTCSEEECCS----------SCC----SCCC--CTTCTTCSEEECCSSC-CSCCC--C----TTCTTCCEEECCS
T ss_pred hhcccCCCCEEEccC----------CcC----CeEc--cccCCCCCEEECcCCC-Cceee--c----CCCCcCCEEECCC
Confidence 577889999999982 122 2222 5567788888888876 66642 2 4677888888877
Q ss_pred CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh-
Q 038945 87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE- 165 (363)
Q Consensus 87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~- 165 (363)
+ ++.. .+ ++.+++|++|+++++. +..++ ...+++|+.|+++++..+..+....-+.|+.+.
T Consensus 116 N-~l~~-l~---~~~l~~L~~L~l~~N~-l~~l~------------l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 116 N-KLTK-LD---VSQNPLLTYLNCARNT-LTEID------------VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp S-CCSC-CC---CTTCTTCCEEECTTSC-CSCCC------------CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred C-cCCe-ec---CCCCCcCCEEECCCCc-cceec------------cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 7 4554 34 6677778888877653 43332 124555555555555333322111111111111
Q ss_pred ----------hccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcc
Q 038945 166 ----------CNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLI 235 (363)
Q Consensus 166 ----------~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 235 (363)
..++++. .|.+ +..+++.. .+..+++|+.|+++++. +..+| +..+++|+.|+++++ .++
T Consensus 178 s~n~l~~l~l~~l~~L~-~L~l---~~N~l~~~---~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N-~l~ 246 (457)
T 3bz5_A 178 SFNKITELDVSQNKLLN-RLNC---DTNNITKL---DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLT 246 (457)
T ss_dssp CSSCCCCCCCTTCTTCC-EEEC---CSSCCSCC---CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCS
T ss_pred CCCccceeccccCCCCC-EEEC---cCCcCCee---ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCC-cCC
Confidence 0111111 0000 00111100 24556677777777664 33343 456677777777765 344
Q ss_pred ccCchhhhhhccccCeEe----------eccCcchhhhhccCccccccccccccccceecccccccccccCCCC------
Q 038945 236 NLLTLSTSESLVNLERMK----------MSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGN------ 299 (363)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~----------l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~------ 299 (363)
.++. +.+++|+.|+ +++|..+..++ ...+++|+.|++++|..++.++...
T Consensus 247 ~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L 312 (457)
T 3bz5_A 247 ELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----------AEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312 (457)
T ss_dssp CCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc----------ccccccCCEEECCCCcccceeccCCCcceEe
Confidence 4432 2344444433 33333222211 2357889999999887665554320
Q ss_pred cccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 300 YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 300 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
....+++|++|+++++ +++.+ .+..+++|+.|++++|
T Consensus 313 ~l~~~~~L~~L~L~~N-~l~~l--~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNT-ELTEL--DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCTTCTTCCEEECTTC-CCSCC--CCTTCTTCSEEECCSS
T ss_pred chhhcccCCEEECCCC-ccccc--ccccCCcCcEEECCCC
Confidence 1334677888888555 56655 3778999999999988
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=1.7e-15 Score=139.73 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=64.6
Q ss_pred CCCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccc-cccCcCCCCCCCCccEEEecCCC
Q 038945 11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEI-WHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
.++|+.|+++. ..+..+ +..+..+++|++|+++++. ++.+ +... ..+++|++|+++++
T Consensus 53 ~~~l~~L~l~~--------------n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 53 SPDTTLLDLQN--------------NDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF----SPLRKLQKLYISKN- 112 (332)
T ss_dssp CTTCCEEECCS--------------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS----TTCTTCCEEECCSS-
T ss_pred CCCCeEEECCC--------------CcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh----hCcCCCCEEECCCC-
Confidence 46788888882 122223 2345667888888888876 6665 2333 46888888888877
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
++.. .|..+ .++|++|+++++. +..++.. ....+++|+.|+++++.
T Consensus 113 ~l~~-l~~~~---~~~L~~L~l~~n~-i~~~~~~---------~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 113 HLVE-IPPNL---PSSLVELRIHDNR-IRKVPKG---------VFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCCS-CCSSC---CTTCCEEECCSSC-CCCCCSG---------GGSSCSSCCEEECCSCC
T ss_pred cCCc-cCccc---cccCCEEECCCCc-cCccCHh---------HhCCCccCCEEECCCCc
Confidence 4553 44332 2688888888754 4443311 12357778888877653
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=8.7e-16 Score=140.93 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=161.3
Q ss_pred ccccccceEecccCcCcccccc-cCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 46 IGFRDIENIKLSLFPRLKEIWH-NQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~-~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
..+++|++|+++++. ++.++. .. ..+++|++|++++| ++....+ +..+++|++|+++++. +..++
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~---- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADL----APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELL---- 96 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHH----TTCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSSE-EEEEE----
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHh----hCCCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCCc-ccccc----
Confidence 346789999999986 776542 23 57999999999998 4555444 7889999999999874 55543
Q ss_pred ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI 204 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l 204 (363)
..++|+.|+++++. +..+. ...+++|+.|++
T Consensus 97 ----------~~~~L~~L~l~~n~-l~~~~--------------------------------------~~~~~~L~~L~l 127 (317)
T 3o53_A 97 ----------VGPSIETLHAANNN-ISRVS--------------------------------------CSRGQGKKNIYL 127 (317)
T ss_dssp ----------ECTTCCEEECCSSC-CSEEE--------------------------------------ECCCSSCEEEEC
T ss_pred ----------CCCCcCEEECCCCc-cCCcC--------------------------------------ccccCCCCEEEC
Confidence 34789999998763 33321 112478999999
Q ss_pred ccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945 205 SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL 284 (363)
Q Consensus 205 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 284 (363)
+++..-...+..+..+++|++|+++++ .++.++...+...+++|+.|++++|. ++.+ +....+++|++|
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---------~~~~~l~~L~~L 196 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV---------KGQVVFAKLKTL 196 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE---------ECCCCCTTCCEE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc---------ccccccccCCEE
Confidence 998754444456677899999999987 45555444445678999999999885 3322 112348899999
Q ss_pred cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++++ .++.++.. +..+++|++|++++| .++.+|..+..+++|+.|++++|
T Consensus 197 ~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 197 DLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp ECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred ECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 99986 66777665 677899999999777 77888888889999999999998
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=1.1e-15 Score=140.16 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=165.6
Q ss_pred cccceEecccCcCcc---cccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945 49 RDIENIKLSLFPRLK---EIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL 125 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~---~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 125 (363)
.+++.|+++++. +. .++... ..+++|++|+++++.++.+..|.. ++.+++|++|+++++.-...++..
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~--- 120 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDF--- 120 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGG---
T ss_pred ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHH---
Confidence 579999999987 65 455555 589999999999644677667766 889999999999987533233321
Q ss_pred cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945 126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS 205 (363)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~ 205 (363)
...+++|+.|+++++. +.. ..+..+..+++|+.|+++
T Consensus 121 -------~~~l~~L~~L~Ls~N~-l~~-----------------------------------~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 121 -------LSQIKTLVTLDFSYNA-LSG-----------------------------------TLPPSISSLPNLVGITFD 157 (313)
T ss_dssp -------GGGCTTCCEEECCSSE-EES-----------------------------------CCCGGGGGCTTCCEEECC
T ss_pred -------HhCCCCCCEEeCCCCc-cCC-----------------------------------cCChHHhcCCCCCeEECc
Confidence 2367899999998763 221 113345677999999999
Q ss_pred cCcCcccccccccCCC-CCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945 206 ECSQLQKLVPASCYLE-NLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL 284 (363)
Q Consensus 206 ~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 284 (363)
++.....+|..+..++ +|++|+++++.--...|.. +..++ |+.|+++++..-.. ....+..+++|+.|
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~--~~~l~-L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLN-LAFVDLSRNMLEGD--------ASVLFGSDKNTQKI 226 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG--GGGCC-CSEEECCSSEEEEC--------CGGGCCTTSCCSEE
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH--HhCCc-ccEEECcCCcccCc--------CCHHHhcCCCCCEE
Confidence 9976557777778887 9999999997543344432 55665 99999999864222 12235678999999
Q ss_pred cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++++. +...... ...+++|++|++++|.--..+|..+..+++|+.|++++|
T Consensus 227 ~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 227 HLAKNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp ECCSSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ECCCCc-eeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 999974 4433332 556899999999888544478888889999999999998
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=2.6e-15 Score=138.61 Aligned_cols=251 Identities=17% Similarity=0.145 Sum_probs=141.9
Q ss_pred hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945 38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE 117 (363)
Q Consensus 38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~ 117 (363)
+..+|..+ .++|++|+++++. ++.++... + ..+++|++|++++| ++....|.. ++.+++|++|+++++. +.
T Consensus 45 l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~ 115 (332)
T 2ft3_A 45 LKAVPKEI--SPDTTLLDLQNND-ISELRKDD-F--KGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKNH-LV 115 (332)
T ss_dssp CSSCCSCC--CTTCCEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSSC-CC
T ss_pred ccccCCCC--CCCCeEEECCCCc-CCccCHhH-h--hCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCCc-CC
Confidence 34455544 3688999999886 77654322 1 57889999999988 566655544 7889999999998764 55
Q ss_pred eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhh--hhccccccc
Q 038945 118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLL--KENAESNKV 195 (363)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~--~~~~~~l~~ 195 (363)
.++. ..+++|+.|+++++. +..+....- ..++++. .|. + ....+. ...+..+..
T Consensus 116 ~l~~------------~~~~~L~~L~l~~n~-i~~~~~~~~-------~~l~~L~-~L~--l-~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 116 EIPP------------NLPSSLVELRIHDNR-IRKVPKGVF-------SGLRNMN-CIE--M-GGNPLENSGFEPGAFDG 171 (332)
T ss_dssp SCCS------------SCCTTCCEEECCSSC-CCCCCSGGG-------SSCSSCC-EEE--C-CSCCCBGGGSCTTSSCS
T ss_pred ccCc------------cccccCCEEECCCCc-cCccCHhHh-------CCCccCC-EEE--C-CCCccccCCCCcccccC
Confidence 4442 123788888887653 332211100 0011111 000 0 000010 011222333
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+ +|+.|+++++. +..+|..+ +++|++|+++++ .++.++. ..+..+++|+.|+++++.. ..+ ....+
T Consensus 172 l-~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~l-~~~-------~~~~~ 237 (332)
T 2ft3_A 172 L-KLNYLRISEAK-LTGIPKDL--PETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQI-RMI-------ENGSL 237 (332)
T ss_dssp C-CCSCCBCCSSB-CSSCCSSS--CSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSCC-CCC-------CTTGG
T ss_pred C-ccCEEECcCCC-CCccCccc--cCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCcC-CcC-------ChhHh
Confidence 3 56666666554 33343332 357777777765 3444332 1245677777777777642 221 11124
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-------CCCCcceeecccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-------DAPKLNKVKPTEE 339 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-------~~~~L~~L~i~~~ 339 (363)
..+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.++.... ..++|+.|++.+|
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred hCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 56778888888875 56666655 667788888888665 5665554322 1467788888887
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=8.8e-16 Score=151.20 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945 11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN 89 (363)
Q Consensus 11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 89 (363)
.++|++|+++. .. +..+ |..+.++++|++|+++++. ++.++... + ..+++|++|++++| .
T Consensus 25 ~~~L~~L~Ls~----------n~----l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n-~ 85 (549)
T 2z81_A 25 TAAMKSLDLSF----------NK----ITYIGHGDLRACANLQVLILKSSR-INTIEGDA-F--YSLGSLEHLDLSDN-H 85 (549)
T ss_dssp CTTCCEEECCS----------SC----CCEECSSTTSSCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECTTS-C
T ss_pred CCCccEEECcC----------Cc----cCccChhhhhcCCcccEEECCCCC-cCccChhh-c--cccccCCEEECCCC-c
Confidence 36888888882 11 2222 3445667888888888876 66654322 1 46788888888887 4
Q ss_pred CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
+....+ ..++.+++|++|+++++. +..+... .....+++|+.|+++++.
T Consensus 86 l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~--------~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 86 LSSLSS-SWFGPLSSLKYLNLMGNP-YQTLGVT--------SLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CCSCCH-HHHTTCTTCCEEECTTCC-CSSSCSS--------CSCTTCTTCCEEEEEESS
T ss_pred cCccCH-HHhccCCCCcEEECCCCc-ccccchh--------hhhhccCCccEEECCCCc
Confidence 555444 347788888888888764 3322100 012345666666666554
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=3.4e-15 Score=143.69 Aligned_cols=226 Identities=20% Similarity=0.233 Sum_probs=162.5
Q ss_pred CCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCC
Q 038945 12 PKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNM 90 (363)
Q Consensus 12 ~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l 90 (363)
++|++|+++. +.+..+ +..+..+++|++|+++++. ++.++... + ..+++|++|+++++ ++
T Consensus 75 ~~l~~L~L~~--------------n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 75 SNTRYLNLME--------------NNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA-F--NGLASLNTLELFDN-WL 135 (452)
T ss_dssp TTCSEEECCS--------------SCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSS-CC
T ss_pred CCccEEECcC--------------CcCceECHHHcCCCCCCCEEECCCCc-cCCcChhh-c--cCcccCCEEECCCC-cC
Confidence 5778888771 122223 4556778999999999986 77765333 1 57999999999998 56
Q ss_pred cccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcccc
Q 038945 91 SSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIR 170 (363)
Q Consensus 91 ~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~ 170 (363)
.. .+...++.+++|++|+++++. +..++.. ....+++|+.|+++++..+..+..
T Consensus 136 ~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---------~~~~l~~L~~L~l~~~~~l~~i~~--------------- 189 (452)
T 3zyi_A 136 TV-IPSGAFEYLSKLRELWLRNNP-IESIPSY---------AFNRVPSLMRLDLGELKKLEYISE--------------- 189 (452)
T ss_dssp SB-CCTTTSSSCTTCCEEECCSCC-CCEECTT---------TTTTCTTCCEEECCCCTTCCEECT---------------
T ss_pred Cc-cChhhhcccCCCCEEECCCCC-cceeCHh---------HHhcCCcccEEeCCCCCCccccCh---------------
Confidence 65 444558889999999999874 5555421 134789999999999887776532
Q ss_pred chhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccC
Q 038945 171 IKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE 250 (363)
Q Consensus 171 l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 250 (363)
..+.++++|+.|+++++. +..++ .+..+++|+.|+++++. ++.++. ..+..+++|+
T Consensus 190 --------------------~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~ 245 (452)
T 3zyi_A 190 --------------------GAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNH-FPEIRP-GSFHGLSSLK 245 (452)
T ss_dssp --------------------TTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSC-CSEECG-GGGTTCTTCC
T ss_pred --------------------hhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCc-CcccCc-ccccCccCCC
Confidence 124566899999999885 44553 46678999999999874 555433 3367889999
Q ss_pred eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945 251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 316 (363)
Q Consensus 251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 316 (363)
.|+++++.. ..+ ....+..+++|+.|+++++ .++.++... +..+++|++|++++++
T Consensus 246 ~L~L~~n~l-~~~-------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNSQV-SLI-------ERNAFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred EEEeCCCcC-ceE-------CHHHhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 999998753 222 1223566889999999986 677776553 5668899999998765
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=3.4e-15 Score=143.19 Aligned_cols=209 Identities=22% Similarity=0.275 Sum_probs=152.7
Q ss_pred hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccc
Q 038945 43 IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHL 122 (363)
Q Consensus 43 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~ 122 (363)
..+..+++|++|+++++. +..++... + ..+++|++|+++++ ++.. .+...+..+++|++|+++++. +..++..
T Consensus 82 ~~~~~l~~L~~L~Ls~n~-i~~i~~~~-~--~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~-i~~~~~~ 154 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNH-IRTIEIGA-F--NGLANLNTLELFDN-RLTT-IPNGAFVYLSKLKELWLRNNP-IESIPSY 154 (440)
T ss_dssp TTTSSCSSCCEEECCSSC-CCEECGGG-G--TTCSSCCEEECCSS-CCSS-CCTTTSCSCSSCCEEECCSCC-CCEECTT
T ss_pred HHhhCCCCCCEEECCCCc-CCccChhh-c--cCCccCCEEECCCC-cCCe-eCHhHhhccccCceeeCCCCc-ccccCHH
Confidence 456678999999999987 77765333 1 57999999999998 5665 444448899999999999864 5555421
Q ss_pred ccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEE
Q 038945 123 EELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSL 202 (363)
Q Consensus 123 ~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L 202 (363)
....+++|+.|+++++..+..+.. ..+.++++|+.|
T Consensus 155 ---------~~~~l~~L~~L~l~~~~~l~~i~~-----------------------------------~~~~~l~~L~~L 190 (440)
T 3zyj_A 155 ---------AFNRIPSLRRLDLGELKRLSYISE-----------------------------------GAFEGLSNLRYL 190 (440)
T ss_dssp ---------TTTTCTTCCEEECCCCTTCCEECT-----------------------------------TTTTTCSSCCEE
T ss_pred ---------HhhhCcccCEeCCCCCCCcceeCc-----------------------------------chhhcccccCee
Confidence 134688999999998877766422 125566899999
Q ss_pred EeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccc
Q 038945 203 EISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLE 282 (363)
Q Consensus 203 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~ 282 (363)
++++|. +..++ .+..+++|+.|+++++ .++.++. ..+..+++|+.|+++++. +..+ ....+..+++|+
T Consensus 191 ~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~-------~~~~~~~l~~L~ 258 (440)
T 3zyj_A 191 NLAMCN-LREIP-NLTPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVI-------ERNAFDNLQSLV 258 (440)
T ss_dssp ECTTSC-CSSCC-CCTTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTCC-CCEE-------CTTSSTTCTTCC
T ss_pred cCCCCc-Ccccc-ccCCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCCCc-eeEE-------ChhhhcCCCCCC
Confidence 999885 55554 4567889999999987 5555543 236788999999999875 3322 222356688999
Q ss_pred eecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945 283 YLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 316 (363)
Q Consensus 283 ~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 316 (363)
.|+++++ .++.++... +..+++|+.|++++++
T Consensus 259 ~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred EEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 9999986 677666553 5668899999988764
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=2.6e-15 Score=144.74 Aligned_cols=267 Identities=15% Similarity=0.103 Sum_probs=154.6
Q ss_pred cccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945 6 LGILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD 85 (363)
Q Consensus 6 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 85 (363)
..+..+++|++|+++. .. +..+| .+..+++|++|+++++. ++.++ . +.+++|++|+++
T Consensus 36 ~~~~~l~~L~~L~Ls~----------n~----l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~----~~l~~L~~L~Ls 93 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHN----------SS----ITDMT-GIEKLTGLTKLICTSNN-ITTLD--L----SQNTNLTYLACD 93 (457)
T ss_dssp EEHHHHTTCCEEECCS----------SC----CCCCT-TGGGCTTCSEEECCSSC-CSCCC--C----TTCTTCSEEECC
T ss_pred cChhHcCCCCEEEccC----------CC----cccCh-hhcccCCCCEEEccCCc-CCeEc--c----ccCCCCCEEECc
Confidence 3456789999999992 22 22334 46778999999999997 88753 3 579999999999
Q ss_pred CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh
Q 038945 86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE 165 (363)
Q Consensus 86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~ 165 (363)
+| ++.+ .+ ++.+++|++|+++++. +..++ ...+++|+.|+++++. ++.+....-+.|+.+.
T Consensus 94 ~N-~l~~-~~---~~~l~~L~~L~L~~N~-l~~l~------------~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~ 154 (457)
T 3bz5_A 94 SN-KLTN-LD---VTPLTKLTYLNCDTNK-LTKLD------------VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELD 154 (457)
T ss_dssp SS-CCSC-CC---CTTCTTCCEEECCSSC-CSCCC------------CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEE
T ss_pred CC-CCce-ee---cCCCCcCCEEECCCCc-CCeec------------CCCCCcCCEEECCCCc-cceeccccCCcCCEEE
Confidence 98 4665 34 7889999999999874 55442 2467889999887653 3333211111222222
Q ss_pred -hccccch-------hhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCcccc
Q 038945 166 -CNFIRIK-------SNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINL 237 (363)
Q Consensus 166 -~~~~~l~-------~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 237 (363)
..+..+. +.|+.-.....+++. .+ +..+++|+.|+++++. +..+ .+..+++|+.|+++++ .++.+
T Consensus 155 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~-l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~i 227 (457)
T 3bz5_A 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD-VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEI 227 (457)
T ss_dssp CTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC-CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCC
T ss_pred CCCCCcccccccccCCcCCEEECCCCccce--ec-cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCC-ccccc
Confidence 1111010 011100000011111 11 3444555555555543 2222 2445666666666665 34444
Q ss_pred CchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc----------ccceecccccccccccCCCCcccCCCCc
Q 038945 238 LTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR----------KLEYLGLDCLPSLTSFCLGNYALEFPSL 307 (363)
Q Consensus 238 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~----------~L~~L~l~~c~~L~~~~~~~~~~~~~~L 307 (363)
| +..+++|+.|+++++. ++.+. ...++ +|+.+++++|..+..++. ..+++|
T Consensus 228 p----~~~l~~L~~L~l~~N~-l~~~~----------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----~~l~~L 288 (457)
T 3bz5_A 228 D----VTPLTQLTYFDCSVNP-LTELD----------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----EGCRKI 288 (457)
T ss_dssp C----CTTCTTCSEEECCSSC-CSCCC----------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----TTCTTC
T ss_pred C----ccccCCCCEEEeeCCc-CCCcC----------HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----cccccC
Confidence 3 3456677777776653 22221 11233 445555666555544442 347889
Q ss_pred cEEeeccCCCcccccC--------CCcCCCCcceeecccC
Q 038945 308 EHVVVRQCPTMKIFSQ--------GVVDAPKLNKVKPTEE 339 (363)
Q Consensus 308 ~~L~l~~c~~l~~l~~--------~~~~~~~L~~L~i~~~ 339 (363)
+.|++++|..+..+|. .+..+++|+.|++++|
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 9999998876666553 2346678888888887
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.4e-15 Score=153.73 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=87.8
Q ss_pred ccCCCccEEEeccCcCcccccccccC--------CCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhc
Q 038945 194 KVFANLKSLEISECSQLQKLVPASCY--------LENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQ 265 (363)
Q Consensus 194 ~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 265 (363)
..+++|+.|+++++. +..+|..... +++|+.|++++| .++.+|.......+++|+.|++++|.. ..++
T Consensus 694 ~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp- 769 (876)
T 4ecn_A 694 ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCF-SSFP- 769 (876)
T ss_dssp HTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCC-SSCC-
T ss_pred ccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCC-Cccc-
Confidence 356788888888874 4455544322 238888888887 555666431113788888888888753 3222
Q ss_pred cCccccccccccccccceecccccc------cccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 266 SQVGEEAEDCIVFRKLEYLGLDCLP------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~L~l~~c~------~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
..+..+++|+.|++++++ -...++.. +..+++|++|++++| .+..+|..+. ++|+.|++++|
T Consensus 770 -------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~--l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 770 -------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG--ITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp -------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT--GGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSC
T ss_pred -------hhhhcCCCCCEEECCCCCCcccccccccChHH--HhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCC
Confidence 124568889999887632 23344444 667889999999877 4588887755 68999999988
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.6e-15 Score=147.38 Aligned_cols=216 Identities=15% Similarity=0.167 Sum_probs=156.4
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
.+++|++|+++++. +..++... + ..+++|++|++++| .+.+..| +..+++|++|++++|. +..++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~-~--~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD-L--APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELL------ 96 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG-G--TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEE------
T ss_pred cCCCccEEEeeCCc-CCCCCHHH-H--hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCC------
Confidence 35689999999987 77654322 1 57999999999998 5665555 7889999999999874 55543
Q ss_pred ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE 206 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 206 (363)
..++|+.|+++++. +..+.. ..+++|+.|++++
T Consensus 97 --------~~~~L~~L~L~~N~-l~~~~~--------------------------------------~~l~~L~~L~L~~ 129 (487)
T 3oja_A 97 --------VGPSIETLHAANNN-ISRVSC--------------------------------------SRGQGKKNIYLAN 129 (487)
T ss_dssp --------ECTTCCEEECCSSC-CCCEEE--------------------------------------CCCSSCEEEECCS
T ss_pred --------CCCCcCEEECcCCc-CCCCCc--------------------------------------cccCCCCEEECCC
Confidence 34789999998763 333211 1247888999988
Q ss_pred CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945 207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 286 (363)
Q Consensus 207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 286 (363)
|..-...+..+..+++|+.|+++++ .+...++..+...+++|+.|++++|. +..+ .....+++|+.|++
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~---------~~~~~l~~L~~L~L 198 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV---------KGQVVFAKLKTLDL 198 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE---------ECCCCCTTCCEEEC
T ss_pred CCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc---------cccccCCCCCEEEC
Confidence 8754444556677888999999886 45544443444578899999998875 3322 11235788999999
Q ss_pred cccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 287 DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 287 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++ .+..++.. +..+++|+.|++++| .++.+|..+..+++|+.|++++|
T Consensus 199 s~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 199 SSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred CCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence 886 56666665 667888999999775 67778888888889999999888
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.3e-15 Score=150.09 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=42.6
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
.+++|++|+++++ .++.++. ...+++|+.|++++| +++.++.+ +..+++|+.|++++|
T Consensus 449 ~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 449 FLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence 4667777777775 5555554 345788999999776 66666554 668999999999999
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=1.5e-14 Score=139.79 Aligned_cols=125 Identities=12% Similarity=0.204 Sum_probs=84.6
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEA 272 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 272 (363)
+..+++|+.|++++|. +..++. +..+++|+.|++++|. ++.++. +..+++|+.|++++|.. ..+.
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~l-~~~~-------- 325 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNNI-SDIS-------- 325 (466)
T ss_dssp GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSCC-SCCG--------
T ss_pred hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCcC-CCch--------
Confidence 5566788888888875 333333 5678888888888763 444433 56778888888888753 2211
Q ss_pred cccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+..+++|+.|++.+| .+..++ . ...+++|+.|++++|. +...+. +..+++|+.|+++++
T Consensus 326 -~~~~l~~L~~L~l~~n-~l~~~~-~--l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 326 -PVSSLTKLQRLFFYNN-KVSDVS-S--LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp -GGGGCTTCCEEECCSS-CCCCCG-G--GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred -hhccCccCCEeECCCC-ccCCch-h--hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence 1346788888888886 455542 2 5668888888887774 444433 668888888888877
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=1.2e-14 Score=131.00 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=70.9
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+++|+.|+++++......+..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++. ++.+. ...+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~ 173 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGNR-ISSVP-------ERAF 173 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCEEC-------TTTT
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCH-hHhccCCCccEEECCCCc-ccccC-------HHHh
Confidence 355555555555432222334445666666666654 3333332 124456666666666653 22221 1123
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE 339 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~ 339 (363)
..+++|+.|+++++ .+..+.... +..+++|++|+++++ .++.++. .+..+++|+.|++++|
T Consensus 174 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 174 RGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 44667777777765 344442221 555777777777666 5555553 3557778888888877
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.3e-14 Score=144.60 Aligned_cols=255 Identities=15% Similarity=0.143 Sum_probs=164.3
Q ss_pred ccccCCCceeEEEeeecccceeeeccCCCchhhhhh-hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEec
Q 038945 7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCY-IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLD 85 (363)
Q Consensus 7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~ 85 (363)
.+..+++|++|+++. .. +..++ ..+.++++|++|+++++. ++.++... + ..+++|++|+++
T Consensus 94 ~~~~l~~L~~L~L~~----------n~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~Ls 155 (597)
T 3oja_B 94 AFAYAHTIQKLYMGF----------NA----IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMS 155 (597)
T ss_dssp TTTTCTTCCEEECCS----------SC----CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECC
T ss_pred HhcCCCCCCEEECCC----------Cc----CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-h--ccCCCCCEEEee
Confidence 678899999999992 22 22333 335678999999999997 88766543 1 478999999999
Q ss_pred CCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhh
Q 038945 86 DCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLE 165 (363)
Q Consensus 86 ~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~ 165 (363)
+| .+....|.. ++.+++|++|+++++. +..++ ...+++|+.|+++++. +..+... ..+..+.
T Consensus 156 ~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~------------~~~l~~L~~L~l~~n~-l~~l~~~--~~L~~L~ 217 (597)
T 3oja_B 156 NN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHVD------------LSLIPSLFHANVSYNL-LSTLAIP--IAVEELD 217 (597)
T ss_dssp SS-CCCBCCTTT-TTTCTTCCEEECTTSC-CSBCC------------GGGCTTCSEEECCSSC-CSEEECC--TTCSEEE
T ss_pred CC-cCCCCChhh-hhcCCcCcEEECcCCC-CCCcC------------hhhhhhhhhhhcccCc-cccccCC--chhheee
Confidence 98 566655544 8889999999999864 44332 1234555555544321 1111000 0111111
Q ss_pred ---hcc---c-cchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccC
Q 038945 166 ---CNF---I-RIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLL 238 (363)
Q Consensus 166 ---~~~---~-~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 238 (363)
... + ...++|+.-.....+++ .++.+..+++|+.|+++++..-...|..+..+++|+.|+++++ .+..++
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 294 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN 294 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEE
T ss_pred ccCCcccccccccCCCCCEEECCCCCCC--CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCC
Confidence 000 0 00001110000111111 2356788899999999999766666777888999999999996 566665
Q ss_pred chhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945 239 TLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 316 (363)
Q Consensus 239 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 316 (363)
.. ...+++|+.|++++|.. ..++. .+..+++|++|++++| .+..++ ...+++|+.|++++++
T Consensus 295 ~~--~~~l~~L~~L~Ls~N~l-~~i~~--------~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 LY--GQPIPTLKVLDLSHNHL-LHVER--------NQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CS--SSCCTTCCEEECCSSCC-CCCGG--------GHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred cc--cccCCCCcEEECCCCCC-CccCc--------ccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 43 46789999999999863 33321 2456899999999997 455554 4458999999998875
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=3.6e-14 Score=143.37 Aligned_cols=144 Identities=17% Similarity=0.106 Sum_probs=96.5
Q ss_pred ccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCch-------hhhhhccccCeEeeccCcchhh
Q 038945 190 AESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTL-------STSESLVNLERMKMSDCKMMEE 262 (363)
Q Consensus 190 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~~~~~l~~L~~L~l~~c~~l~~ 262 (363)
+..+..+++|+.|+++++..-...+..+..+++|+.|+++++. ++.++.. ..+..+++|+.|+++++. ++.
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 550 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDE 550 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCC
Confidence 3456677888888888875333223346678888888888763 4443211 124677888888888764 333
Q ss_pred hhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc--CCCCcceeecccC-
Q 038945 263 IIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV--DAPKLNKVKPTEE- 339 (363)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~i~~~- 339 (363)
++ ...+..+++|+.|+++++ .++.++... +..+++|+.|+++++ +++.++.... .+++|+.+++++|
T Consensus 551 i~-------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 551 IP-------VEVFKDLFELKIIDLGLN-NLNTLPASV-FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CC-------TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CC-------HHHcccccCcceeECCCC-CCCcCCHhH-hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 31 122456889999999874 677776653 456889999999777 7776665433 6789999999998
Q ss_pred CCCCCc
Q 038945 340 EDGDDE 345 (363)
Q Consensus 340 ~~~~~~ 345 (363)
-.|+++
T Consensus 621 ~~c~c~ 626 (680)
T 1ziw_A 621 FDCTCE 626 (680)
T ss_dssp CCBCCC
T ss_pred cccCCc
Confidence 344444
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=1.2e-14 Score=146.86 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=40.0
Q ss_pred hccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCC
Q 038945 43 IEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCD 114 (363)
Q Consensus 43 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~ 114 (363)
..+.++++|++|+++++. ++.++... ...+++|++|++++| ++....+.. ++.+++|++|++++|.
T Consensus 67 ~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNE-LSQLSDKT---FAFCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHNG 132 (680)
T ss_dssp THHHHCTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSSC
T ss_pred HHHhcccCcCEEECCCCc-cCccChhh---hccCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCCc
Confidence 334556777777777765 66554432 145677777777776 344433333 6677777777777653
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=4e-16 Score=143.98 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=135.1
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce-ecccccccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE-VLHLEELNA 127 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~ 127 (363)
+.++.|+++++. +...+... ..+++|++|++++|. +........+..+++|++|++++|. +.. .+.
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~------ 136 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVN------ 136 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHH------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHH------
Confidence 778889988876 66544333 468899999999884 5543233447889999999998874 332 111
Q ss_pred cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945 128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC 207 (363)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c 207 (363)
....+++|+.|++++|..+.+. .+ ...+..+++|++|++++|
T Consensus 137 ----~l~~~~~L~~L~L~~~~~l~~~------~l----------------------------~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 137 ----TLAKNSNLVRLNLSGCSGFSEF------AL----------------------------QTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ----HHTTCTTCSEEECTTCBSCCHH------HH----------------------------HHHHHHCTTCCEEECCCC
T ss_pred ----HHhcCCCCCEEECCCCCCCCHH------HH----------------------------HHHHhcCCCCCEEcCCCC
Confidence 0235788999999988655431 00 111344578888888888
Q ss_pred cCccc--ccccccCCC-CCCEEeeccCc-CccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccce
Q 038945 208 SQLQK--LVPASCYLE-NLATLEVSKCH-GLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEY 283 (363)
Q Consensus 208 ~~l~~--l~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~ 283 (363)
..+.. ++..+..++ +|++|++++|. .+++......+..+++|+.|++++|..++.. ....+..+++|++
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~l~~l~~L~~ 251 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-------CFQEFFQLNYLQH 251 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-------GGGGGGGCTTCCE
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-------HHHHHhCCCCCCE
Confidence 55553 344456778 88888888885 4432222234567888888888888744322 1223456788888
Q ss_pred ecccccccccccCCCCcccCCCCccEEeeccC
Q 038945 284 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 315 (363)
Q Consensus 284 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 315 (363)
|++++|..+....... ...+++|++|++++|
T Consensus 252 L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence 8888886544332211 455888888888888
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=144.45 Aligned_cols=110 Identities=14% Similarity=0.165 Sum_probs=68.8
Q ss_pred cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchh--hhhccCccccccccccccccceecccccccccc-
Q 038945 218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMME--EIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTS- 294 (363)
Q Consensus 218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~- 294 (363)
..+++|++|+++++.--...+. .+..+++|+.|++++|..-. .++. .+..+++|++|+++++. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAE--------MTTQMKSLQQLDISQNS-VSYD 389 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHH--------HHTTCTTCCEEECCSSC-CBCC
T ss_pred hhCCcccEEEeECCccChhhhh--hhccCCCCCEEEccCCccCccccchH--------HHhhCCCCCEEECCCCc-CCcc
Confidence 5788999999999853332332 35789999999999986321 2211 12334555555555432 221
Q ss_pred cCCCC--------------------cccCC-CCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 295 FCLGN--------------------YALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 295 ~~~~~--------------------~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
++.+. ....+ ++|+.|++++| +++.+|.++..+++|++|++++|
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 22110 01112 57888888666 66778877778889999999888
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=7.3e-15 Score=133.86 Aligned_cols=227 Identities=17% Similarity=0.165 Sum_probs=157.4
Q ss_pred CCCceeEEEeeecccceeeeccCCCchhhhhhhc-cccccccceEecccCcCcccc---cccCcCCCCCCCCccEEEecC
Q 038945 11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIE-MIGFRDIENIKLSLFPRLKEI---WHNQALPVSFFNNLRHLVLDD 86 (363)
Q Consensus 11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~---~~~~~l~~~~l~~L~~L~l~~ 86 (363)
.++|++|+++. ..+..+|.. +..+++|++|+++++. ++.+ +... ..+++|++|++++
T Consensus 27 ~~~l~~L~L~~--------------n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~----~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 27 PSSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD----FGTTSLKYLDLSF 87 (306)
T ss_dssp CTTCCEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH----HSCSCCCEEECCS
T ss_pred CCCCCEEECCC--------------CccCccCHhHhhccccCCEEECCCCc-cCcccCccccc----ccccccCEEECCC
Confidence 46889998882 223345544 4678999999999986 6643 2222 3689999999999
Q ss_pred CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhh
Q 038945 87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLEC 166 (363)
Q Consensus 87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~ 166 (363)
+ .+.. .|.. +..+++|++|+++++. +..++... ....+++|+.|+++++. +...
T Consensus 88 n-~i~~-l~~~-~~~l~~L~~L~l~~n~-l~~~~~~~--------~~~~l~~L~~L~l~~n~-l~~~------------- 141 (306)
T 2z66_A 88 N-GVIT-MSSN-FLGLEQLEHLDFQHSN-LKQMSEFS--------VFLSLRNLIYLDISHTH-TRVA------------- 141 (306)
T ss_dssp C-SEEE-EEEE-EETCTTCCEEECTTSE-EESSTTTT--------TTTTCTTCCEEECTTSC-CEEC-------------
T ss_pred C-cccc-Chhh-cCCCCCCCEEECCCCc-ccccccch--------hhhhccCCCEEECCCCc-CCcc-------------
Confidence 8 4554 4444 7789999999999864 44443211 13468899999998764 2221
Q ss_pred ccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc-cccccccCCCCCCEEeeccCcCccccCchhhhhh
Q 038945 167 NFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ-KLVPASCYLENLATLEVSKCHGLINLLTLSTSES 245 (363)
Q Consensus 167 ~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 245 (363)
....+..+++|+.|+++++.... ..+..+..+++|++|+++++ .++.++. ..+..
T Consensus 142 ----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~ 197 (306)
T 2z66_A 142 ----------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNS 197 (306)
T ss_dssp ----------------------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTT
T ss_pred ----------------------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCH-HHhcC
Confidence 12235567899999999987544 46677788999999999997 4555533 23678
Q ss_pred ccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCC-CccEEeeccCC
Q 038945 246 LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFP-SLEHVVVRQCP 316 (363)
Q Consensus 246 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~l~~c~ 316 (363)
+++|+.|+++++.. ..+ ....+..+++|+.|+++++ .+....... ...++ +|++|++++++
T Consensus 198 l~~L~~L~L~~N~l-~~~-------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 198 LSSLQVLNMSHNNF-FSL-------DTFPYKCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCC-SBC-------CSGGGTTCTTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCcc-Ccc-------ChhhccCcccCCEeECCCC-CCcccCHHH-HHhhhccCCEEEccCCC
Confidence 89999999999853 222 1112456899999999997 455443332 55664 89999998774
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=2.6e-14 Score=147.96 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
++|+.|+++++......+..+..+++|+.|+++++. +..++. ..+..+++|+.|+++++.. ..+ ....+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~N~l-~~~-------~~~~~~ 335 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIAD-EAFYGLDNLQVLNLSYNLL-GEL-------YSSNFY 335 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECT-TTTTTCSSCCEEEEESCCC-SCC-------CSCSCS
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCCh-HHhcCCCCCCEEECCCCCC-Ccc-------CHHHhc
Confidence 456666666665433334455566777777776653 333322 2245667777777776642 211 112345
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+++|+.|+++++ .+..++... +..+++|+.|+++++ .++.++ .+++|+.+++++|
T Consensus 336 ~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N 391 (844)
T 3j0a_A 336 GLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN 391 (844)
T ss_dssp SCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESC
T ss_pred CCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCC
Confidence 5677777777775 455554432 455777777777665 444332 2566666666655
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=1.5e-15 Score=139.28 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=169.0
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
..+++|++|+++. ..+... .|..+..+++|++|+++++. +...+. . ..+++|++|++++|
T Consensus 31 ~~~~~L~~L~L~~----------n~l~~~---~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~Ls~n- 90 (317)
T 3o53_A 31 QSAWNVKELDLSG----------NPLSQI---SAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN- 90 (317)
T ss_dssp TTGGGCSEEECTT----------SCCCCC---CHHHHTTCTTCCEEECTTSC-CEEEEE-E----TTCTTCCEEECCSS-
T ss_pred ccCCCCCEEECcC----------CccCcC---CHHHhhCCCcCCEEECCCCc-CCcchh-h----hhcCCCCEEECcCC-
Confidence 4567899999982 222221 23556778999999999987 765443 3 58999999999998
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF 168 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~ 168 (363)
++.... ..++|++|+++++. +..++ ...+++|+.|+++++. ++.+.
T Consensus 91 ~l~~l~------~~~~L~~L~l~~n~-l~~~~------------~~~~~~L~~L~l~~N~-l~~~~-------------- 136 (317)
T 3o53_A 91 YVQELL------VGPSIETLHAANNN-ISRVS------------CSRGQGKKNIYLANNK-ITMLR-------------- 136 (317)
T ss_dssp EEEEEE------ECTTCCEEECCSSC-CSEEE------------ECCCSSCEEEECCSSC-CCSGG--------------
T ss_pred cccccc------CCCCcCEEECCCCc-cCCcC------------ccccCCCCEEECCCCC-CCCcc--------------
Confidence 455422 35899999999874 55543 2357889999998763 33221
Q ss_pred ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccc-cCCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945 169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPAS-CYLENLATLEVSKCHGLINLLTLSTSESLV 247 (363)
Q Consensus 169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 247 (363)
...+..+++|+.|+++++......+..+ ..+++|++|+++++. ++.++.. ..++
T Consensus 137 ---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~l~ 191 (317)
T 3o53_A 137 ---------------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFA 191 (317)
T ss_dssp ---------------------GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCT
T ss_pred ---------------------chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc---cccc
Confidence 1234556899999999986444334443 367999999999874 5555432 3478
Q ss_pred ccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCc-ccccCCCc
Q 038945 248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM-KIFSQGVV 326 (363)
Q Consensus 248 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~ 326 (363)
+|+.|++++|. +..+.. .+..+++|+.|+++++ .++.++.. ...+++|+.|++++++-. ..++..+.
T Consensus 192 ~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 192 KLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp TCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cCCEEECCCCc-CCcchh--------hhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 99999999875 333211 2456889999999986 67777665 677899999999887654 35666666
Q ss_pred CCCCcceeecccC
Q 038945 327 DAPKLNKVKPTEE 339 (363)
Q Consensus 327 ~~~~L~~L~i~~~ 339 (363)
.+++|+.+++.++
T Consensus 260 ~~~~L~~l~l~~~ 272 (317)
T 3o53_A 260 KNQRVQTVAKQTV 272 (317)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccccceEEECCCc
Confidence 8888888888733
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=5.4e-16 Score=154.03 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=74.9
Q ss_pred hhhhhhhccccccc-CCCccEEEecc---CcCccccc------ccccCCCCCCEEeeccCcC-ccccCchhhhhhccccC
Q 038945 182 LQHLLKENAESNKV-FANLKSLEISE---CSQLQKLV------PASCYLENLATLEVSKCHG-LINLLTLSTSESLVNLE 250 (363)
Q Consensus 182 ~~~l~~~~~~~l~~-l~~L~~L~l~~---c~~l~~l~------~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~ 250 (363)
+.++++.....+.. +++|+.|++++ |..++..| .....+++|++|+++.|.. +.......+...+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 34444444444433 66777777763 33444322 1134467777777766543 33322222233467777
Q ss_pred eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-C-cCC
Q 038945 251 RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-V-VDA 328 (363)
Q Consensus 251 ~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~-~~~ 328 (363)
.|++++|..-...+. ..+..+++|++|++++|+ +.+.........+++|++|++++|. ++..... + ..+
T Consensus 467 ~L~L~~n~l~~~~~~-------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~ 537 (592)
T 3ogk_B 467 WMLLGYVGESDEGLM-------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMAR 537 (592)
T ss_dssp EEEECSCCSSHHHHH-------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCC
T ss_pred EeeccCCCCCHHHHH-------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhC
Confidence 777776652111100 012346777777777775 4332111113456777777777775 5432211 1 155
Q ss_pred CCcceeeccc
Q 038945 329 PKLNKVKPTE 338 (363)
Q Consensus 329 ~~L~~L~i~~ 338 (363)
|.+....+..
T Consensus 538 p~l~~~~~~~ 547 (592)
T 3ogk_B 538 PYWNIELIPS 547 (592)
T ss_dssp TTEEEEEECC
T ss_pred CCcEEEEecC
Confidence 6665554443
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=2.5e-14 Score=141.46 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=70.6
Q ss_pred cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccc-cC
Q 038945 218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTS-FC 296 (363)
Q Consensus 218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-~~ 296 (363)
..+++|++|+++++.--...+ ..+..+++|+.|+++++. ++.+.. ....+..+++|+.|+++++. ++. ++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~~~l~~L~~L~l~~N~-l~~~~~ 420 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNG-LKNFFK-----VALMTKNMSSLETLDVSLNS-LNSHAY 420 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT--TTCCSCSSCCEEECCSSC-CCBTTH-----HHHTTTTCTTCCEEECTTSC-CBSCCS
T ss_pred cCCCCceEEECCCCccccchh--hhhcccCCCCEEECCCCC-cCCccc-----chhhhcCCCCCCEEECCCCc-CCCccC
Confidence 568899999999875333233 235789999999999875 332110 00112334555555555432 221 22
Q ss_pred CCC--------------------cccCC-CCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 297 LGN--------------------YALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 297 ~~~--------------------~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+. ....+ ++|+.|++++| +++.+|.++..+++|+.|++++|
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 110 01223 58888888776 78888888889999999999988
No 56
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=6.1e-16 Score=142.78 Aligned_cols=215 Identities=18% Similarity=0.168 Sum_probs=145.7
Q ss_pred hhccccccccceEecccCcCccc--ccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce-
Q 038945 42 YIEMIGFRDIENIKLSLFPRLKE--IWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE- 118 (363)
Q Consensus 42 ~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~- 118 (363)
+..+..+++|++|+++++. +.. ++... ..+++|++|++++|. +.+..+.. +..+++|++|++++|..+..
T Consensus 86 ~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSV-IEVSTLHGIL----SQCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp CCSCCCCBCCCEEECTTCE-ECHHHHHHHH----TTBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHH
T ss_pred chhhccCCCCCEEEccCCC-cCHHHHHHHH----hhCCCCCEEeCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCHH
Confidence 3345568999999999987 654 33333 579999999999994 66545554 77899999999999865653
Q ss_pred -ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945 119 -VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA 197 (363)
Q Consensus 119 -~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~ 197 (363)
++.. ...+++|+.|++++|.++++.. ....+..++
T Consensus 159 ~l~~~----------~~~~~~L~~L~l~~~~~l~~~~----------------------------------~~~~~~~l~ 194 (336)
T 2ast_B 159 ALQTL----------LSSCSRLDELNLSWCFDFTEKH----------------------------------VQVAVAHVS 194 (336)
T ss_dssp HHHHH----------HHHCTTCCEEECCCCTTCCHHH----------------------------------HHHHHHHSC
T ss_pred HHHHH----------HhcCCCCCEEcCCCCCCcChHH----------------------------------HHHHHHhcc
Confidence 2211 2358899999999986665410 011234457
Q ss_pred -CccEEEeccCc-Cc--ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccc
Q 038945 198 -NLKSLEISECS-QL--QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAE 273 (363)
Q Consensus 198 -~L~~L~l~~c~-~l--~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 273 (363)
+|++|++++|. .+ ..++..+..+++|++|++++|..++..... .+..+++|+.|++++|..+... ...
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-------~~~ 266 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPE-------TLL 266 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGG-------GGG
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHH-------HHH
Confidence 99999999995 34 334455567999999999999766543222 3568899999999999743321 122
Q ss_pred ccccccccceecccccccccccCCCCcccCC-CCccEEeeccCCCccccc
Q 038945 274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFS 322 (363)
Q Consensus 274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~ 322 (363)
.+..+++|+.|++.+| +. ... ...+ .+++.|++ +|+.++...
T Consensus 267 ~l~~~~~L~~L~l~~~--i~---~~~-~~~l~~~l~~L~l-~~n~l~~~~ 309 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI--VP---DGT-LQLLKEALPHLQI-NCSHFTTIA 309 (336)
T ss_dssp GGGGCTTCCEEECTTS--SC---TTC-HHHHHHHSTTSEE-SCCCSCCTT
T ss_pred HHhcCCCCCEEeccCc--cC---HHH-HHHHHhhCcceEE-ecccCcccc
Confidence 3567999999999998 32 221 2222 23555667 566666443
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=7e-14 Score=139.27 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 196 FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+++|+.|++++|. +..++. .+++|+.|+++++ .++.++. .+++|+.|++++|. ++.+.
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N~-L~~lp----------- 237 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLP----------- 237 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSSC-CSCCC-----------
T ss_pred CCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCCc-cCcCC-----------
Confidence 4778888888775 444443 2578888888876 4555542 34789999988873 34332
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
..+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|..+..+++|+.|++++|
T Consensus 238 ~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 238 VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 24689999999986 6776655 3789999999877 78889988899999999999999
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=3.6e-14 Score=140.13 Aligned_cols=229 Identities=17% Similarity=0.123 Sum_probs=163.3
Q ss_pred hhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceec
Q 038945 41 CYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVL 120 (363)
Q Consensus 41 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~ 120 (363)
.+..+..+++|++|+++++. ++.++... ..+ +|++|++.+|. +.. .|. ..+++|++|+++++......+
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~-l~~l~~~~----~~~-~L~~L~l~~n~-~~~-l~~---~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVT-IERVKDFS----YNF-GWQHLELVNCK-FGQ-FPT---LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp STTTTGGGTTCSEEEEESCE-ECSCCBCC----SCC-CCSEEEEESCB-CSS-CCB---CBCSSCCEEEEESCBSCCBCC
T ss_pred chhhhcCcCcccEEEecCcc-chhhhhhh----ccC-CccEEeeccCc-ccc-cCc---ccccccCEEeCcCCccccccc
Confidence 34556667889999999886 77766555 456 99999999884 443 452 468899999998876433222
Q ss_pred ccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCcc
Q 038945 121 HLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLK 200 (363)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~ 200 (363)
...+++|+.|+++++. +.... ..+..+..+++|+
T Consensus 343 ------------~~~~~~L~~L~l~~n~-l~~~~---------------------------------~~~~~~~~~~~L~ 376 (570)
T 2z63_A 343 ------------EVDLPSLEFLDLSRNG-LSFKG---------------------------------CCSQSDFGTTSLK 376 (570)
T ss_dssp ------------CCBCTTCCEEECCSSC-CBEEE---------------------------------EEEHHHHTCSCCC
T ss_pred ------------cccCCCCCEEeCcCCc-cCccc---------------------------------cccccccccCccC
Confidence 1368889999998763 22210 0012345568999
Q ss_pred EEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccc
Q 038945 201 SLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRK 280 (363)
Q Consensus 201 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~ 280 (363)
.|++++|. +..++..+..+++|++|+++++. +...+....+..+++|+.|++++|...... ...+..+++
T Consensus 377 ~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~ 446 (570)
T 2z63_A 377 YLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NGIFNGLSS 446 (570)
T ss_dssp EEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECC--------TTTTTTCTT
T ss_pred EEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccc--------hhhhhcCCc
Confidence 99999986 44454457789999999999974 444433334678999999999998643221 223567899
Q ss_pred cceecccccccc-cccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945 281 LEYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 281 L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~ 339 (363)
|++|++++|.-. ..++.. +..+++|++|++++| .++.+ |..+..+++|+.|++++|
T Consensus 447 L~~L~l~~n~l~~~~~p~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp CCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEECcCCcCccccchhh--hhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC
Confidence 999999998533 235544 777999999999888 55555 677889999999999998
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=6e-14 Score=123.17 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=34.1
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCccee
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV 119 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~ 119 (363)
+|++|+++++. ++.++... + ..+++|++|+++++..+....+. .+..+++|++|++++|..+..+
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~-~--~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHA-F--SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp TCCEEEEESCC-CSEECTTT-T--TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEE
T ss_pred cccEEEEeCCc-ceEECHHH-c--cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEc
Confidence 56666666655 55544322 1 34566666666665434433322 2555666666666654444443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=5.7e-14 Score=126.64 Aligned_cols=214 Identities=15% Similarity=0.097 Sum_probs=138.3
Q ss_pred hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945 38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE 117 (363)
Q Consensus 38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~ 117 (363)
+..+|..+ .++|++|+++++. ++.++... + ..+++|++|+++++ .+....+.. +..+++|++|+++++..+.
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~-~--~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNR-ISHVPAAS-F--RACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCC
T ss_pred cccCCcCC--CCCceEEEeeCCc-CCccCHHH-c--ccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCcc
Confidence 33444433 3678888888886 77655332 1 46888999998887 566544544 7788889999988876455
Q ss_pred eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945 118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA 197 (363)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~ 197 (363)
.+... ....+++|+.|+++++. +..+. +..+..++
T Consensus 95 ~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~-----------------------------------~~~~~~l~ 129 (285)
T 1ozn_A 95 SVDPA---------TFHGLGRLHTLHLDRCG-LQELG-----------------------------------PGLFRGLA 129 (285)
T ss_dssp CCCTT---------TTTTCTTCCEEECTTSC-CCCCC-----------------------------------TTTTTTCT
T ss_pred ccCHH---------HhcCCcCCCEEECCCCc-CCEEC-----------------------------------HhHhhCCc
Confidence 54211 13357788888888763 22211 22345568
Q ss_pred CccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945 198 NLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV 277 (363)
Q Consensus 198 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 277 (363)
+|+.|+++++..-...+..+..+++|++|+++++ .++.++.. .+..+++|+.|+++++.. ..+ ....+..
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l-~~~-------~~~~~~~ 199 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLLLHQNRV-AHV-------HPHAFRD 199 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCC-CEE-------CTTTTTT
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHH-HhcCccccCEEECCCCcc-ccc-------CHhHccC
Confidence 8888888887543322334667888888888886 45555532 355778888888888753 222 1223456
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 316 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 316 (363)
+++|+.|+++++ .++.++... +..+++|++|++++++
T Consensus 200 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 200 LGRLMTLYLFAN-NLSALPTEA-LAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSS-CCSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred cccccEeeCCCC-cCCcCCHHH-cccCcccCEEeccCCC
Confidence 788888888886 555554322 4567888888887764
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1.1e-14 Score=141.39 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=171.0
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
..+|+|++|+++. ..+... .|..+..+++|++|+++++. +...+. . ..+++|++|++++|
T Consensus 31 ~~~~~L~~L~Ls~----------n~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~Ls~N- 90 (487)
T 3oja_A 31 QSAWNVKELDLSG----------NPLSQI---SAADLAPFTKLELLNLSSNV-LYETLD-L----ESLSTLRTLDLNNN- 90 (487)
T ss_dssp TTGGGCCEEECCS----------SCCCCC---CGGGGTTCTTCCEEECTTSC-CEEEEE-C----TTCTTCCEEECCSS-
T ss_pred ccCCCccEEEeeC----------CcCCCC---CHHHHhCCCCCCEEEeeCCC-CCCCcc-c----ccCCCCCEEEecCC-
Confidence 4566999999992 222221 23567788999999999997 765433 3 58999999999998
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF 168 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~ 168 (363)
.+....+ .++|++|++++|. +..++ ...+++|+.|+++++. +..+
T Consensus 91 ~l~~l~~------~~~L~~L~L~~N~-l~~~~------------~~~l~~L~~L~L~~N~-l~~~--------------- 135 (487)
T 3oja_A 91 YVQELLV------GPSIETLHAANNN-ISRVS------------CSRGQGKKNIYLANNK-ITML--------------- 135 (487)
T ss_dssp EEEEEEE------CTTCCEEECCSSC-CCCEE------------ECCCSSCEEEECCSSC-CCSG---------------
T ss_pred cCCCCCC------CCCcCEEECcCCc-CCCCC------------ccccCCCCEEECCCCC-CCCC---------------
Confidence 5665333 4899999999875 54443 2357899999998764 3222
Q ss_pred ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCccccccccc-CCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945 169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASC-YLENLATLEVSKCHGLINLLTLSTSESLV 247 (363)
Q Consensus 169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 247 (363)
.+..+..+++|+.|+++++..-...+..+. .+++|++|+++++. ++.++.. ..++
T Consensus 136 --------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~---~~l~ 191 (487)
T 3oja_A 136 --------------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ---VVFA 191 (487)
T ss_dssp --------------------GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC---CCCT
T ss_pred --------------------CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc---ccCC
Confidence 122355679999999999875554555554 68999999999974 5555432 3589
Q ss_pred ccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCc-ccccCCCc
Q 038945 248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM-KIFSQGVV 326 (363)
Q Consensus 248 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~ 326 (363)
+|+.|+++++. +..++ +.+..+++|+.|+++++ .+..++.. ...+++|+.|++++++-. ..+|..+.
T Consensus 192 ~L~~L~Ls~N~-l~~~~--------~~~~~l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 192 KLKTLDLSSNK-LAFMG--------PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp TCCEEECCSSC-CCEEC--------GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred CCCEEECCCCC-CCCCC--------HhHcCCCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 99999999975 33322 12557899999999996 56777765 677899999999888654 25556666
Q ss_pred CCCCcceeecc
Q 038945 327 DAPKLNKVKPT 337 (363)
Q Consensus 327 ~~~~L~~L~i~ 337 (363)
.+++|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 78888888874
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=133.05 Aligned_cols=238 Identities=17% Similarity=0.125 Sum_probs=156.7
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhh-hhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKC-YIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDD 86 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~ 86 (363)
+..+++|++|+++. ..+..+ +..+.++++|++|+++++. ++.++... ...+++|++|++++
T Consensus 72 ~~~l~~L~~L~L~~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 72 LQRCVNLQALVLTS--------------NGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSW---FKPLSSLTFLNLLG 133 (353)
T ss_dssp TTTCTTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHH---HTTCTTCSEEECTT
T ss_pred hccCCCCCEEECCC--------------CccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhH---hCCCccCCEEECCC
Confidence 45566666666651 122233 3446678999999999987 87766542 14799999999999
Q ss_pred CCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhh
Q 038945 87 CKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLEC 166 (363)
Q Consensus 87 c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~ 166 (363)
+ .+....+...+..+++|++|+++++..+..++.. ....+++|+.|+++++. +..+
T Consensus 134 n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~------------- 189 (353)
T 2z80_A 134 N-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------DFAGLTFLEELEIDASD-LQSY------------- 189 (353)
T ss_dssp C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETT-CCEE-------------
T ss_pred C-CCcccCchhhhccCCCCcEEECCCCccccccCHH---------HccCCCCCCEEECCCCC-cCcc-------------
Confidence 8 5565333144888999999999998666655321 13467899999998764 3222
Q ss_pred ccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCccccccc-ccCCCCCCEEeeccCcCccccCchh--hh
Q 038945 167 NFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPA-SCYLENLATLEVSKCHGLINLLTLS--TS 243 (363)
Q Consensus 167 ~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~--~~ 243 (363)
.+..+..+++|+.|+++++.. ..++.. ...+++|+.|+++++. ++.++... ..
T Consensus 190 ----------------------~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 245 (353)
T 2z80_A 190 ----------------------EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTG 245 (353)
T ss_dssp ----------------------CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCB-CTTCCCC-----
T ss_pred ----------------------CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCc-cccccccccccc
Confidence 123456678999999999863 444432 3358999999999873 44443221 12
Q ss_pred hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCC
Q 038945 244 ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 317 (363)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~ 317 (363)
...+.++.+++.++..-...... ..+.+..+++|+.|+++++ .++.++... +..+++|++|++++++-
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~----l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQ----VMKLLNQISGLLELEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHH----HHHHHHTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred cccchhhccccccccccCcchhh----hHHHHhcccCCCEEECCCC-CCCccCHHH-HhcCCCCCEEEeeCCCc
Confidence 34567888888776422211000 1122456889999999986 677777652 36789999999988853
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=1.4e-13 Score=142.50 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=75.8
Q ss_pred CCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCc
Q 038945 221 ENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNY 300 (363)
Q Consensus 221 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 300 (363)
++|+.|+++++. +..++. ..+..+++|+.|+++++.. ..+ ....+..+++|++|+++++ .+..+....
T Consensus 266 ~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i-~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~- 333 (844)
T 3j0a_A 266 SSVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNKI-NKI-------ADEAFYGLDNLQVLNLSYN-LLGELYSSN- 333 (844)
T ss_dssp SCCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCCC-CEE-------CTTTTTTCSSCCEEEEESC-CCSCCCSCS-
T ss_pred CCccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCcC-CCC-------ChHHhcCCCCCCEEECCCC-CCCccCHHH-
Confidence 678888888864 444332 2356788999999988753 222 1223567889999999986 455553332
Q ss_pred ccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945 301 ALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE 339 (363)
Q Consensus 301 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~ 339 (363)
+..+++|+.|+++++ .+..++. .+..+++|+.|++++|
T Consensus 334 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 677899999999887 6666665 4568999999999998
No 64
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=4.5e-14 Score=131.32 Aligned_cols=235 Identities=14% Similarity=0.144 Sum_probs=156.1
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|..+ .+++++|+|+++. ++.++.+. + ..+++|++|+++++.... .+|...+.++++|+++.+.++.++
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcc
Confidence 344556554 3679999999987 88877543 1 478999999999985444 455555788888888777777777
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF 196 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l 196 (363)
..++.. ....+++|+.|+++++. ++.+.... ....
T Consensus 93 ~~l~~~---------~f~~l~~L~~L~l~~n~-l~~~~~~~-----------------------------------~~~~ 127 (350)
T 4ay9_X 93 LYINPE---------AFQNLPNLQYLLISNTG-IKHLPDVH-----------------------------------KIHS 127 (350)
T ss_dssp CEECTT---------SBCCCTTCCEEEEEEEC-CSSCCCCT-----------------------------------TCCB
T ss_pred cccCch---------hhhhccccccccccccc-cccCCchh-----------------------------------hccc
Confidence 766421 13467888999888753 33321111 1122
Q ss_pred CCccEEEeccCcCccccccc-ccCC-CCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPA-SCYL-ENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED 274 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~-~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 274 (363)
..+..+++.++..+..++.. +..+ ..++.|+++++ .++.++.. ....++|+.+++.++..++.+.. +.
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~-------~~ 197 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPN-------DV 197 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCT-------TT
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCH-------HH
Confidence 45677777777666666542 2222 35777888764 56666543 22456788888887777766532 23
Q ss_pred cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+..+++|+.|+++++ .++.++.+ .+.+|++|.+.++.+++.+|. +..+++|+.+++..+
T Consensus 198 f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 198 FHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 456788888888875 67777654 267788888888888888873 667888888887654
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=2.1e-13 Score=123.50 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=113.6
Q ss_pred cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
+..++++++++++++. ++.+|... .++++.|+++++ ++....+. .+..+++|++|+++++. +..++..
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~------~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDL------PKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRAE-LTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCC------CTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTSC-CCEEECC--
T ss_pred ccccCCccEEECCCCC-CCcCCCCC------CCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCCc-cCcccCC--
Confidence 3456778888888765 77655433 367888888887 45554443 37778888888888754 4444321
Q ss_pred ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI 204 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l 204 (363)
..+++|+.|+++++. +
T Consensus 74 ---------~~l~~L~~L~Ls~N~-l------------------------------------------------------ 89 (290)
T 1p9a_G 74 ---------GTLPVLGTLDLSHNQ-L------------------------------------------------------ 89 (290)
T ss_dssp ---------SCCTTCCEEECCSSC-C------------------------------------------------------
T ss_pred ---------CCCCcCCEEECCCCc-C------------------------------------------------------
Confidence 245666666666431 2
Q ss_pred ccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945 205 SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL 284 (363)
Q Consensus 205 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 284 (363)
..++..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++. ++.+. ...+..+++|+.|
T Consensus 90 ------~~l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L 153 (290)
T 1p9a_G 90 ------QSLPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGNE-LKTLP-------PGLLTPTPKLEKL 153 (290)
T ss_dssp ------SSCCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTSC-CCCCC-------TTTTTTCTTCCEE
T ss_pred ------CcCchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCCC-CCccC-------hhhcccccCCCEE
Confidence 222233334445555555443 2333332 123445555555555543 22211 1112345666666
Q ss_pred cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++++ .++.++.+. +..+++|++|+++++ .++.+|.++...++|+.+++++|
T Consensus 154 ~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 154 SLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred ECCCC-cCCccCHHH-hcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 66654 455555442 345677777777554 66677777777777777777777
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=6.2e-14 Score=123.09 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=149.8
Q ss_pred CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCc
Q 038945 77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNF 156 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 156 (363)
++|++|+++++ +++...+ ..++.+++|++|+++++..+..++... ...+++|+.|++++|.+++.+..
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~l~~~n~l~~i~~- 98 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHS---------FYNLSKVTHIEIRNTRNLTYIDP- 98 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTT---------EESCTTCCEEEEEEETTCCEECT-
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhH---------cCCCcCCcEEECCCCCCeeEcCH-
Confidence 48999999998 5665444 348889999999999986576665311 23678999999998777766521
Q ss_pred ccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCC---EEeeccCcC
Q 038945 157 TGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLA---TLEVSKCHG 233 (363)
Q Consensus 157 ~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~---~L~l~~c~~ 233 (363)
..+..+++|+.|+++++. +..+|. +..+++|+ .|++++++.
T Consensus 99 ----------------------------------~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 99 ----------------------------------DALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp ----------------------------------TSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTT
T ss_pred ----------------------------------HHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcc
Confidence 235567899999999986 445654 66777887 999999877
Q ss_pred ccccCchhhhhhccccC-eEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCC-CCccEEe
Q 038945 234 LINLLTLSTSESLVNLE-RMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEF-PSLEHVV 311 (363)
Q Consensus 234 l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~ 311 (363)
++.++.. .+..+++|+ .|+++++. ++.+... .+.. ++|+.|++++++.++.++... +..+ ++|++|+
T Consensus 143 l~~i~~~-~~~~l~~L~~~L~l~~n~-l~~i~~~-------~~~~-~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~ 211 (239)
T 2xwt_C 143 MTSIPVN-AFQGLCNETLTLKLYNNG-FTSVQGY-------AFNG-TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLD 211 (239)
T ss_dssp CCEECTT-TTTTTBSSEEEEECCSCC-CCEECTT-------TTTT-CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEE
T ss_pred hhhcCcc-cccchhcceeEEEcCCCC-CcccCHh-------hcCC-CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEE
Confidence 8887653 356889999 99998875 3333211 1223 789999999987788776653 5567 8999999
Q ss_pred eccCCCcccccCCCcCCCCcceeecccC
Q 038945 312 VRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 312 l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
++++ .++.+|.. .+++|+.|++.++
T Consensus 212 l~~N-~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 212 VSQT-SVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTC-CCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCC-ccccCChh--HhccCceeeccCc
Confidence 9775 77777766 7889999999876
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=6.3e-13 Score=119.18 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=58.8
Q ss_pred ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccc----eecccccccc
Q 038945 217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLE----YLGLDCLPSL 292 (363)
Q Consensus 217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~L 292 (363)
+..+++|++|+++++. ++.+.....+..+++|+.|++++|.. +.+. ...+..+++|+ .|+++++ .+
T Consensus 120 ~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~-------~~~~~~l~~L~~l~l~L~ls~n-~l 189 (276)
T 2z62_A 120 IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIY-------CTDLRVLHQMPLLNLSLDLSLN-PM 189 (276)
T ss_dssp CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEEC-------GGGGHHHHTCTTCCEEEECCSS-CC
T ss_pred cccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC-CcCC-------HHHhhhhhhccccceeeecCCC-cc
Confidence 3445555555555542 32211112245556666666665532 2111 01122233444 5666664 45
Q ss_pred cccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945 293 TSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 293 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~ 339 (363)
+.++.. .....+|++|+++++ .++.++... ..+++|+.|++++|
T Consensus 190 ~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 190 NFIQPG--AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEECTT--SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccCcc--ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 555544 444457888888666 466676654 47888888888888
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=2e-15 Score=149.92 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=78.9
Q ss_pred cCCCccEEEeccCcCccc-cccccc-CCCCCCEEeecc---CcCccccCc----hhhhhhccccCeEeeccCcc-hhhhh
Q 038945 195 VFANLKSLEISECSQLQK-LVPASC-YLENLATLEVSK---CHGLINLLT----LSTSESLVNLERMKMSDCKM-MEEII 264 (363)
Q Consensus 195 ~l~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~---c~~l~~~~~----~~~~~~l~~L~~L~l~~c~~-l~~~~ 264 (363)
.+++|++|+++.+ .+.. .+..+. .+++|++|++++ |+.++..|. ...+..+++|++|++++|.. +.+..
T Consensus 376 ~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 3566666666332 2221 112222 367777777763 455555321 12345677888888876653 22110
Q ss_pred ccCcccccccc-ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccc--ccCCCcCCCCcceeecccC
Q 038945 265 QSQVGEEAEDC-IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI--FSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 265 ~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~i~~~ 339 (363)
...+ ..+++|++|++++|. +.+.........+++|++|++++|+ ++. ++.....+++|+.|++++|
T Consensus 455 -------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 455 -------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp -------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred -------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 0011 237889999998764 4432211124568999999999997 553 3334457899999999998
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=8.9e-15 Score=133.88 Aligned_cols=229 Identities=19% Similarity=0.243 Sum_probs=152.3
Q ss_pred cceEecccCcCcccc--cccCc---CCCCCCCCccEEEecCCCCCcccCchhHH-hhcCCCCEEEEccCCCcceeccc-c
Q 038945 51 IENIKLSLFPRLKEI--WHNQA---LPVSFFNNLRHLVLDDCKNMSSAIPANLI-RCLNNLASLEVRNCDSLEEVLHL-E 123 (363)
Q Consensus 51 L~~L~l~~~~~l~~~--~~~~~---l~~~~l~~L~~L~l~~c~~l~~~~p~~~l-~~l~~L~~L~l~~~~~l~~~~~~-~ 123 (363)
|++|+++++. ++.. +.... +....+++|++|++++| ++.+..|..++ ..+++|++|+++++. +..++.. .
T Consensus 65 L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLA 141 (312)
T ss_dssp HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHH
T ss_pred Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHH
Confidence 7888888765 5432 11110 00014789999999988 46655665532 788999999998864 4443311 1
Q ss_pred cccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEE
Q 038945 124 ELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLE 203 (363)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~ 203 (363)
... ....++|+.|+++++. +..+ .+..+..+++|+.|+
T Consensus 142 ~l~------~~~~~~L~~L~L~~N~-l~~~-----------------------------------~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 142 ELQ------QWLKPGLKVLSIAQAH-SLNF-----------------------------------SCEQVRVFPALSTLD 179 (312)
T ss_dssp HHH------TTCCTTCCEEEEESCS-CCCC-----------------------------------CTTTCCCCSSCCEEE
T ss_pred HHH------HhhcCCCcEEEeeCCC-Cccc-----------------------------------hHHHhccCCCCCEEE
Confidence 100 0123788999988764 3222 123466779999999
Q ss_pred eccCcCccc--ccccc--cCCCCCCEEeeccCcCccccCc--hhhhhhccccCeEeeccCcchhhhhccCcccccccccc
Q 038945 204 ISECSQLQK--LVPAS--CYLENLATLEVSKCHGLINLLT--LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV 277 (363)
Q Consensus 204 l~~c~~l~~--l~~~~--~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 277 (363)
++++..... ++..+ ..+++|++|+++++ .++.++. ..++..+++|+.|+++++.. .... .......
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~------~~~~~~~ 251 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSL-RDAA------GAPSCDW 251 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCC-CSSC------CCSCCCC
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcC-Cccc------chhhhhh
Confidence 999875443 22333 67899999999997 4553322 12345779999999999853 3211 1122345
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++|++|+++++ .++.++.. .. ++|++|+++++ +++.+|. +..+++|+.|++++|
T Consensus 252 l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVPKG--LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CTTCCEEECTTS-CCSSCCSS--CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred cCCCCEEECCCC-ccChhhhh--cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 789999999996 56777665 32 89999999776 7887766 789999999999998
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=3.5e-15 Score=148.15 Aligned_cols=148 Identities=12% Similarity=0.008 Sum_probs=79.3
Q ss_pred hhhhhhhcccccc-cCCCccEEEec-----cCcCcccccc------cccCCCCCCEEeeccCcCccccCchhhhhhcccc
Q 038945 182 LQHLLKENAESNK-VFANLKSLEIS-----ECSQLQKLVP------ASCYLENLATLEVSKCHGLINLLTLSTSESLVNL 249 (363)
Q Consensus 182 ~~~l~~~~~~~l~-~l~~L~~L~l~-----~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 249 (363)
+.++++.....+. .+++|+.|+++ +|..++..+. .+..+++|+.|++++ .++......+...+++|
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhc
Confidence 3344444444443 46777888877 4555553321 134567788888755 44443222233346778
Q ss_pred CeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCC
Q 038945 250 ERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDA 328 (363)
Q Consensus 250 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~ 328 (363)
+.|++++|......+.. ....+++|+.|++++|+. .+.........+++|++|++++|+........+ ..+
T Consensus 459 ~~L~L~~~~i~~~~~~~-------l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHH-------VLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp CEEEEESCCSSHHHHHH-------HHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred cEeeccCCCCcHHHHHH-------HHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 88888777632211110 013477888888888754 332221124457788888888886522111222 256
Q ss_pred CCcceeecccC
Q 038945 329 PKLNKVKPTEE 339 (363)
Q Consensus 329 ~~L~~L~i~~~ 339 (363)
|+|+...+.++
T Consensus 531 p~l~i~~~~~~ 541 (594)
T 2p1m_B 531 PKLNVEVIDER 541 (594)
T ss_dssp TTEEEEEECSS
T ss_pred CCCEEEEecCC
Confidence 77765555544
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=3.6e-14 Score=133.66 Aligned_cols=261 Identities=13% Similarity=0.054 Sum_probs=154.8
Q ss_pred chhhhhhhccccccccceEecccCcCcccccccC-cCCCCCCCCccEEEecCC--CCCcccCchhH------HhhcCCCC
Q 038945 36 STIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQ-ALPVSFFNNLRHLVLDDC--KNMSSAIPANL------IRCLNNLA 106 (363)
Q Consensus 36 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~l~~~~l~~L~~L~l~~c--~~l~~~~p~~~------l~~l~~L~ 106 (363)
..+..++..+..+++|++|++++|. +....... .-....+++|++|++++| .++.+..|..+ +..+++|+
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 3566677777788999999999986 65421110 000146899999999987 34444455543 36789999
Q ss_pred EEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhh
Q 038945 107 SLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLL 186 (363)
Q Consensus 107 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~ 186 (363)
+|+++++. +...... . .......+++|+.|++++|. +... ....+... +..+....
T Consensus 98 ~L~Ls~n~-l~~~~~~-~----l~~~l~~~~~L~~L~L~~n~-l~~~------~~~~l~~~-----------l~~l~~~~ 153 (386)
T 2ca6_A 98 TVRLSDNA-FGPTAQE-P----LIDFLSKHTPLEHLYLHNNG-LGPQ------AGAKIARA-----------LQELAVNK 153 (386)
T ss_dssp EEECCSCC-CCTTTHH-H----HHHHHHHCTTCCEEECCSSC-CHHH------HHHHHHHH-----------HHHHHHHH
T ss_pred EEECCCCc-CCHHHHH-H----HHHHHHhCCCCCEEECcCCC-CCHH------HHHHHHHH-----------HHHHhhhh
Confidence 99999875 3321000 0 00002357889999998874 2211 00000000 00000000
Q ss_pred hhcccccccCCCccEEEeccCcCc-cccc---ccccCCCCCCEEeeccCcCccccC---chh-hhhhccccCeEeeccCc
Q 038945 187 KENAESNKVFANLKSLEISECSQL-QKLV---PASCYLENLATLEVSKCHGLINLL---TLS-TSESLVNLERMKMSDCK 258 (363)
Q Consensus 187 ~~~~~~l~~l~~L~~L~l~~c~~l-~~l~---~~~~~~~~L~~L~l~~c~~l~~~~---~~~-~~~~l~~L~~L~l~~c~ 258 (363)
. -...++|+.|++++|..- ..++ ..+..+++|++|++++| .++... ... .+..+++|+.|++++|.
T Consensus 154 ---~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 154 ---K--AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp ---H--HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred ---h--cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 0 011178899999888643 2222 34456789999999887 344211 011 34578899999998886
Q ss_pred ch----hhhhccCccccccccccccccceeccccccccccc-----CCCCcc--cCCCCccEEeeccCCCccc-----cc
Q 038945 259 MM----EEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF-----CLGNYA--LEFPSLEHVVVRQCPTMKI-----FS 322 (363)
Q Consensus 259 ~l----~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~~~~--~~~~~L~~L~l~~c~~l~~-----l~ 322 (363)
.- ..++. .+..+++|++|++++|. +... +.. . ..+++|++|++++| .++. +|
T Consensus 228 l~~~g~~~l~~--------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~--l~~~~~~~L~~L~L~~n-~i~~~g~~~l~ 295 (386)
T 2ca6_A 228 FTHLGSSALAI--------ALKSWPNLRELGLNDCL-LSARGAAAVVDA--FSKLENIGLQTLRLQYN-EIELDAVRTLK 295 (386)
T ss_dssp CHHHHHHHHHH--------HGGGCTTCCEEECTTCC-CCHHHHHHHHHH--HHTCSSCCCCEEECCSS-CCBHHHHHHHH
T ss_pred CCcHHHHHHHH--------HHccCCCcCEEECCCCC-CchhhHHHHHHH--HhhccCCCeEEEECcCC-cCCHHHHHHHH
Confidence 32 22221 24567889999998874 4332 111 2 23788999999777 4554 66
Q ss_pred CCC-cCCCCcceeecccC
Q 038945 323 QGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 323 ~~~-~~~~~L~~L~i~~~ 339 (363)
..+ .++++|+.|++++|
T Consensus 296 ~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHCTTCCEEECTTS
T ss_pred HHHHhcCCCceEEEccCC
Confidence 666 46889999999988
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=2.1e-14 Score=142.57 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=29.3
Q ss_pred cCCCccEEEeccCcCcccc--cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeec
Q 038945 195 VFANLKSLEISECSQLQKL--VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMS 255 (363)
Q Consensus 195 ~l~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 255 (363)
.+++|++|++++|. +... ......+++|++|++++| +.......+...+++|+.|++.
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence 44667777776665 3321 112335666666666665 2221112223345666666663
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=8.4e-13 Score=127.05 Aligned_cols=70 Identities=14% Similarity=0.042 Sum_probs=24.5
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcc--cccCCCcCC-------------CCcceeecccCCCC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK--IFSQGVVDA-------------PKLNKVKPTEEEDG 342 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~-------------~~L~~L~i~~~~~~ 342 (363)
+++|++|+++++ .++.++. .+++|++|+++++.-.. .+|..+..+ ++|+.|++++|
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N--- 406 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN--- 406 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC---
Confidence 456666666664 3444433 25677777776653222 345555544 67777777776
Q ss_pred CCccccCCcchHHHHH
Q 038945 343 DDEGCWEGNLNDTKKK 358 (363)
Q Consensus 343 ~~~~~~~~~~~~~~~~ 358 (363)
.+.-.+.+|+.++.
T Consensus 407 --~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 407 --PLREFPDIPESVED 420 (454)
T ss_dssp ----------------
T ss_pred --cCCccccchhhHhh
Confidence 33333345554443
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=1.7e-13 Score=131.98 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=134.7
Q ss_pred ccccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcc-cccccCcCCCCCCCC-------
Q 038945 7 GILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLK-EIWHNQALPVSFFNN------- 78 (363)
Q Consensus 7 ~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~~~l~~------- 78 (363)
...+.+.|+.+.++ .+.+..+|.++..+++|++|+++++. +. .+|... +.+.+
T Consensus 6 ~~~~~~~L~~L~l~--------------~n~l~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~----~~l~~L~~l~l~ 66 (454)
T 1jl5_A 6 RNVSNTFLQEPLRH--------------SSNLTEMPVEAENVKSKTEYYNAWSE-WERNAPPGN----GEQREMAVSRLR 66 (454)
T ss_dssp ------------------------------------------CCHHHHHHHHHH-HHHTSCTTS----CCCHHHHHHHHH
T ss_pred cccccccchhhhcc--------------cCchhhCChhHhcccchhhhhccCCc-ccccCCccc----ccchhcchhhhh
Confidence 34456777777777 13345677778888888888888876 43 434433 34444
Q ss_pred ------ccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccccccc
Q 038945 79 ------LRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKR 152 (363)
Q Consensus 79 ------L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 152 (363)
+++|++++| ++++ .|. + .++|++|+++++. +..++. .+++|+.|+++++ +++.
T Consensus 67 ~c~~~~l~~L~l~~~-~l~~-lp~--~--~~~L~~L~l~~n~-l~~lp~-------------~~~~L~~L~l~~n-~l~~ 125 (454)
T 1jl5_A 67 DCLDRQAHELELNNL-GLSS-LPE--L--PPHLESLVASCNS-LTELPE-------------LPQSLKSLLVDNN-NLKA 125 (454)
T ss_dssp HHHHHTCSEEECTTS-CCSC-CCS--C--CTTCSEEECCSSC-CSSCCC-------------CCTTCCEEECCSS-CCSC
T ss_pred hhhccCCCEEEecCC-cccc-CCC--C--cCCCCEEEccCCc-CCcccc-------------ccCCCcEEECCCC-ccCc
Confidence 477888877 4554 332 1 3678888887653 443331 2356777776654 2333
Q ss_pred ccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCc
Q 038945 153 FCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCH 232 (363)
Q Consensus 153 l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 232 (363)
+.... +.++.+. + ...++. ..+++..+++|+.|+++++. +..+|.. .++|++|+++++
T Consensus 126 l~~~~-~~L~~L~-------------L-~~n~l~--~lp~~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n- 183 (454)
T 1jl5_A 126 LSDLP-PLLEYLG-------------V-SNNQLE--KLPELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNN- 183 (454)
T ss_dssp CCSCC-TTCCEEE-------------C-CSSCCS--SCCCCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-
T ss_pred ccCCC-CCCCEEE-------------C-cCCCCC--CCcccCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCC-
Confidence 21110 0111111 0 001111 12346777899999998885 4445443 458999999887
Q ss_pred CccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEee
Q 038945 233 GLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 312 (363)
Q Consensus 233 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l 312 (363)
.++.++. ++.+++|+.|++++|.. ..+. ...++|++|++++| .++.++. +..+++|++|++
T Consensus 184 ~l~~l~~---~~~l~~L~~L~l~~N~l-~~l~-----------~~~~~L~~L~l~~n-~l~~lp~---~~~l~~L~~L~l 244 (454)
T 1jl5_A 184 QLEELPE---LQNLPFLTAIYADNNSL-KKLP-----------DLPLSLESIVAGNN-ILEELPE---LQNLPFLTTIYA 244 (454)
T ss_dssp CCSSCCC---CTTCTTCCEEECCSSCC-SSCC-----------CCCTTCCEEECCSS-CCSSCCC---CTTCTTCCEEEC
T ss_pred cCCcCcc---ccCCCCCCEEECCCCcC-CcCC-----------CCcCcccEEECcCC-cCCcccc---cCCCCCCCEEEC
Confidence 5555652 57889999999988752 2221 12358999999987 5666652 667899999999
Q ss_pred ccCCCcccccCCCcCCCCcceeecccC
Q 038945 313 RQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 313 ~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++ +++.+|.. +++|+.|++++|
T Consensus 245 ~~N-~l~~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 245 DNN-LLKTLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp CSS-CCSSCCSC---CTTCCEEECCSS
T ss_pred CCC-cCCccccc---ccccCEEECCCC
Confidence 776 66666543 478888888887
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=9.3e-13 Score=122.38 Aligned_cols=225 Identities=14% Similarity=0.108 Sum_probs=153.1
Q ss_pred CCCceeEEEeeecccceeeeccCCCchhhhhhh-ccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCC
Q 038945 11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYI-EMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKN 89 (363)
Q Consensus 11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~ 89 (363)
.+++++|+++ .+.+..+|. .+.++++|++|+|+++.-++.++... ...+++++++...++.+
T Consensus 29 ~~~l~~L~Ls--------------~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 29 PRNAIELRFV--------------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKANN 91 (350)
T ss_dssp CTTCSEEEEE--------------SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTCCEEEEEEETT
T ss_pred CCCCCEEEcc--------------CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchhhhhhhcccCCc
Confidence 4689999999 234555664 46778999999999997334444332 14678888877766667
Q ss_pred CcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccc
Q 038945 90 MSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFI 169 (363)
Q Consensus 90 l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~ 169 (363)
+....|. .++.+++|++|+++++. +..++... .....++..+++.++.++..+....
T Consensus 92 l~~l~~~-~f~~l~~L~~L~l~~n~-l~~~~~~~---------~~~~~~l~~l~l~~~~~i~~l~~~~------------ 148 (350)
T 4ay9_X 92 LLYINPE-AFQNLPNLQYLLISNTG-IKHLPDVH---------KIHSLQKVLLDIQDNINIHTIERNS------------ 148 (350)
T ss_dssp CCEECTT-SBCCCTTCCEEEEEEEC-CSSCCCCT---------TCCBSSCEEEEEESCTTCCEECTTS------------
T ss_pred ccccCch-hhhhccccccccccccc-cccCCchh---------hcccchhhhhhhccccccccccccc------------
Confidence 8765554 48899999999999864 55544321 1133456677777766666543221
Q ss_pred cchhhHHHHHHhhhhhhhhcccccccC-CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccc
Q 038945 170 RIKSNLMTRLFALQHLLKENAESNKVF-ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN 248 (363)
Q Consensus 170 ~l~~~L~l~~~~~~~l~~~~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 248 (363)
+..+ ..++.|+++++. ++.++.......+|+.|.+.++..++.++.. .+..+++
T Consensus 149 -----------------------f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~ 203 (350)
T 4ay9_X 149 -----------------------FVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASG 203 (350)
T ss_dssp -----------------------STTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEEC
T ss_pred -----------------------hhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcc
Confidence 1112 467888888764 5666666556678888888888888888753 3568889
Q ss_pred cCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeecc
Q 038945 249 LERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 314 (363)
Q Consensus 249 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 314 (363)
|+.|+++++. ++.++. ..+.+|+.|.+.++.+++.++. ...+++|+.+++.+
T Consensus 204 L~~LdLs~N~-l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISRTR-IHSLPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTTSC-CCCCCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred cchhhcCCCC-cCccCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 9999998874 554432 2366777777777778887774 55688888888754
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=6.8e-13 Score=121.13 Aligned_cols=189 Identities=19% Similarity=0.222 Sum_probs=107.6
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
.+++|++|+++++. ++.++ .. ..+++|++|++++| ++....+ +..+++|++|+++++. +..++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~----- 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVSA----- 102 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCGG-----
T ss_pred HcCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCchh-----
Confidence 35667777777765 65543 22 35677777777766 4454333 6667777777777654 444321
Q ss_pred ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE 206 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 206 (363)
...+++|+.|+++++. ++.+ +.+..+++|+.|++++
T Consensus 103 ------~~~l~~L~~L~l~~n~-l~~~-------------------------------------~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 103 ------IAGLQSIKTLDLTSTQ-ITDV-------------------------------------TPLAGLSNLQVLYLDL 138 (308)
T ss_dssp ------GTTCTTCCEEECTTSC-CCCC-------------------------------------GGGTTCTTCCEEECCS
T ss_pred ------hcCCCCCCEEECCCCC-CCCc-------------------------------------hhhcCCCCCCEEECCC
Confidence 2346667777776653 2221 1134456777777776
Q ss_pred CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945 207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 286 (363)
Q Consensus 207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 286 (363)
+. +..++. +..+++|++|++++| .++.++. +..+++|+.|++++|. +..+. .+..+++|+.|++
T Consensus 139 n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L 202 (308)
T 1h6u_A 139 NQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDNK-ISDIS---------PLASLPNLIEVHL 202 (308)
T ss_dssp SC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCCEEEC
T ss_pred Cc-cCcCcc-ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCCc-cCcCh---------hhcCCCCCCEEEc
Confidence 64 333322 456677777777765 3444432 4566777777777654 22211 1345667777777
Q ss_pred cccccccccCCCCcccCCCCccEEeeccC
Q 038945 287 DCLPSLTSFCLGNYALEFPSLEHVVVRQC 315 (363)
Q Consensus 287 ~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 315 (363)
+++ .+..++. ...+++|+.|+++++
T Consensus 203 ~~N-~l~~~~~---l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 203 KNN-QISDVSP---LANTSNLFIVTLTNQ 227 (308)
T ss_dssp TTS-CCCBCGG---GTTCTTCCEEEEEEE
T ss_pred cCC-ccCcccc---ccCCCCCCEEEccCC
Confidence 765 3444432 455677777777665
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=1.6e-12 Score=118.57 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=138.3
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
...+++|++|.+.. . .+..++ .+..+++|++|+++++. ++.++. . ..+++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~----------~----~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~----~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 37 QADLDGITTLSAFG----------T----GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-L----KNLTKITELELSGN 95 (308)
T ss_dssp HHHHHTCCEEECTT----------S----CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-G----TTCCSCCEEECCSC
T ss_pred HHHcCCcCEEEeeC----------C----CccCch-hhhccCCCCEEEccCCc-CCCChh-H----ccCCCCCEEEccCC
Confidence 34578888888882 1 222233 35668999999999986 777554 3 57899999999998
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN 167 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~ 167 (363)
. +... +. +..+++|++|++++|. +..++. ...+++|+.|+++++. +..+
T Consensus 96 ~-l~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-----------l~~l~~L~~L~l~~n~-l~~~-------------- 144 (308)
T 1h6u_A 96 P-LKNV-SA--IAGLQSIKTLDLTSTQ-ITDVTP-----------LAGLSNLQVLYLDLNQ-ITNI-------------- 144 (308)
T ss_dssp C-CSCC-GG--GTTCTTCCEEECTTSC-CCCCGG-----------GTTCTTCCEEECCSSC-CCCC--------------
T ss_pred c-CCCc-hh--hcCCCCCCEEECCCCC-CCCchh-----------hcCCCCCCEEECCCCc-cCcC--------------
Confidence 4 6653 32 8889999999999875 555432 2468889999998763 3322
Q ss_pred cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhcc
Q 038945 168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLV 247 (363)
Q Consensus 168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 247 (363)
+.+..+++|+.|++++|. +..++. +..+++|++|+++++ .++.++. +..++
T Consensus 145 -----------------------~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~ 195 (308)
T 1h6u_A 145 -----------------------SPLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN-KISDISP---LASLP 195 (308)
T ss_dssp -----------------------GGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGGCT
T ss_pred -----------------------ccccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCC-ccCcChh---hcCCC
Confidence 114556899999999885 455544 678899999999887 4555543 57889
Q ss_pred ccCeEeeccCcchhhhhccCccccccccccccccceeccccccccccc
Q 038945 248 NLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF 295 (363)
Q Consensus 248 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 295 (363)
+|+.|++++|.. ..+. .+..+++|+.|++++++ +...
T Consensus 196 ~L~~L~L~~N~l-~~~~---------~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 196 NLIEVHLKNNQI-SDVS---------PLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp TCCEEECTTSCC-CBCG---------GGTTCTTCCEEEEEEEE-EECC
T ss_pred CCCEEEccCCcc-Cccc---------cccCCCCCCEEEccCCe-eecC
Confidence 999999998753 3221 24568899999998863 4443
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=1.8e-12 Score=129.01 Aligned_cols=111 Identities=18% Similarity=0.097 Sum_probs=79.7
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
++|+.|+++++. +..++ ..+++|+.|+++++ .++.++. .+++|+.|++++|. +..+. .
T Consensus 161 ~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~-l~~l~-----------~ 218 (622)
T 3g06_A 161 SELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNNR-LTSLP-----------A 218 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCC-----------C
T ss_pred CCCCEEECCCCC-CCCCc---ccCCCCcEEECCCC-CCCCCCC-----ccchhhEEECcCCc-ccccC-----------C
Confidence 577777777764 44444 34688888888876 4555542 34788888888764 33221 1
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|. .+++|+.|++++|
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp~-----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCCCEEEccCC-ccCcCCC-----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC
Confidence 3578999999986 6676653 3689999999877 7887876 6789999999999
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=5.7e-12 Score=112.65 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=45.9
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK 129 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 129 (363)
..+++++++.. ++.+|... .++|++|+++++ ++....+. .+..+++|++|+++++. +..++..
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~------~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~i~~~------- 79 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI------PADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDNK-LQTLPAG------- 79 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC------CTTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSSC-CSCCCTT-------
T ss_pred CCCEEEccCCC-CCccCCCC------CCCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCCc-cCeeChh-------
Confidence 36677777765 66654333 356788888776 45543332 36777788888887653 4333210
Q ss_pred cccCCCCCccceeecccc
Q 038945 130 EHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~ 147 (363)
....+++|+.|+++++
T Consensus 80 --~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 80 --IFKELKNLETLWVTDN 95 (270)
T ss_dssp --TTSSCTTCCEEECCSS
T ss_pred --hhcCCCCCCEEECCCC
Confidence 0124566666666654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=4e-12 Score=113.94 Aligned_cols=211 Identities=19% Similarity=0.177 Sum_probs=144.6
Q ss_pred hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945 38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE 117 (363)
Q Consensus 38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~ 117 (363)
+..+|..+. ++|++|+++++. ++.++... + ..+++|++|++++| ++....+. .+..+++|++|+++++. +.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYS-F--FSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCC-CCEECTTT-T--TTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC-CC
T ss_pred ccccCCCCC--CCccEEECCCCc-ccccCHhH-h--ccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc-cC
Confidence 444555442 579999999987 88765432 1 57899999999998 56654443 38889999999999875 44
Q ss_pred eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945 118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA 197 (363)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~ 197 (363)
.++. .....+++|+.|+++++. +..+. ...+..++
T Consensus 90 ~~~~---------~~~~~l~~L~~L~l~~n~-l~~~~-----------------------------------~~~~~~l~ 124 (276)
T 2z62_A 90 SLAL---------GAFSGLSSLQKLVAVETN-LASLE-----------------------------------NFPIGHLK 124 (276)
T ss_dssp EECT---------TTTTTCTTCCEEECTTSC-CCCST-----------------------------------TCCCTTCT
T ss_pred ccCh---------hhhcCCccccEEECCCCC-ccccC-----------------------------------chhcccCC
Confidence 4431 113467899999998763 22221 11256678
Q ss_pred CccEEEeccCcCcc-cccccccCCCCCCEEeeccCcCccccCchhhhhhccccC----eEeeccCcchhhhhccCccccc
Q 038945 198 NLKSLEISECSQLQ-KLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE----RMKMSDCKMMEEIIQSQVGEEA 272 (363)
Q Consensus 198 ~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~ 272 (363)
+|+.|+++++.... .++..+..+++|++|+++++ .++.++.. .+..+++|+ .|+++++. +..+...
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~l~l~L~ls~n~-l~~~~~~------ 195 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT-DLRVLHQMPLLNLSLDLSLNP-MNFIQPG------ 195 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG-GGHHHHTCTTCCEEEECCSSC-CCEECTT------
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHH-HhhhhhhccccceeeecCCCc-ccccCcc------
Confidence 99999999986433 25677788999999999987 45555432 245566666 78888865 3322111
Q ss_pred cccccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945 273 EDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 315 (363)
Q Consensus 273 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 315 (363)
.....+|+.|+++++ .++.++... +..+++|++|+++++
T Consensus 196 --~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 196 --AFKEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTN 234 (276)
T ss_dssp --SSCSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSS
T ss_pred --ccCCCcccEEECCCC-ceeecCHhH-hcccccccEEEccCC
Confidence 123448999999986 477776652 467899999999855
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=1.9e-12 Score=116.00 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=134.9
Q ss_pred ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccc
Q 038945 46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEEL 125 (363)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 125 (363)
..+++|+.|+++++. ++.++ +. ..+++|++|++++| ++.+ .+ .+..+++|++|++++|. +..++..
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~-~l----~~l~~L~~L~l~~n-~l~~-~~--~l~~l~~L~~L~L~~n~-l~~~~~~--- 103 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQ-GI----QYLPNVRYLALGGN-KLHD-IS--ALKELTNLTYLILTGNQ-LQSLPNG--- 103 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECTTS-CCCC-CG--GGTTCTTCCEEECTTSC-CCCCCTT---
T ss_pred ccccceeeeeeCCCC-ccccc-cc----ccCCCCcEEECCCC-CCCC-ch--hhcCCCCCCEEECCCCc-cCccChh---
Confidence 346788888888876 66533 22 46888888888887 4554 33 27788888888888764 4443321
Q ss_pred cccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEec
Q 038945 126 NADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEIS 205 (363)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~ 205 (363)
....+++|+.|+++++. ++.+. ...+..+++|+.|+++
T Consensus 104 ------~~~~l~~L~~L~L~~n~-l~~~~-----------------------------------~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 104 ------VFDKLTNLKELVLVENQ-LQSLP-----------------------------------DGVFDKLTNLTYLNLA 141 (272)
T ss_dssp ------TTTTCTTCCEEECTTSC-CCCCC-----------------------------------TTTTTTCTTCCEEECC
T ss_pred ------HhcCCcCCCEEECCCCc-CCccC-----------------------------------HHHhccCCCCCEEECC
Confidence 12357788888888763 33321 1124556888888888
Q ss_pred cCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945 206 ECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL 284 (363)
Q Consensus 206 ~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 284 (363)
+|. +..++. .+..+++|++|++++| .++.++. ..+..+++|+.|++++|.. ..+. ...+..+++|+.|
T Consensus 142 ~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~-------~~~~~~l~~L~~L 210 (272)
T 3rfs_A 142 HNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQL-KSVP-------DGVFDRLTSLQYI 210 (272)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCC-SCCC-------TTTTTTCTTCCEE
T ss_pred CCc-cCccCHHHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCcC-CccC-------HHHHhCCcCCCEE
Confidence 885 444443 3467888889988887 4555543 2356788888988888753 3221 1224567888888
Q ss_pred cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCC
Q 038945 285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPK 330 (363)
Q Consensus 285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 330 (363)
++.+++- .+.+++|+.+++..+.-...+|..++.++.
T Consensus 211 ~l~~N~~---------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 211 WLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ECCSSCB---------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EccCCCc---------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8887632 234777888877665444466666665544
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=6.2e-12 Score=125.33 Aligned_cols=71 Identities=11% Similarity=-0.034 Sum_probs=48.4
Q ss_pred cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCccccc-CCCcCC-CCcceeecccCCCCCCccccCCcc
Q 038945 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDA-PKLNKVKPTEEEDGDDEGCWEGNL 352 (363)
Q Consensus 275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~-~~L~~L~i~~~~~~~~~~~~~~~~ 352 (363)
+..+++|++|+++++ .++.++... +..+++|+.|+++++ +++.++ ..+.++ ++|+.|++++| ++.+++++
T Consensus 514 f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N-----p~~C~C~~ 585 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN-----DFACTCEH 585 (635)
T ss_dssp TTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC-----CBCCSGGG
T ss_pred HcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC-----CCcccCCc
Confidence 556778888888875 566665442 556788999998776 555444 455566 58999999999 55555554
Q ss_pred h
Q 038945 353 N 353 (363)
Q Consensus 353 ~ 353 (363)
.
T Consensus 586 ~ 586 (635)
T 4g8a_A 586 Q 586 (635)
T ss_dssp H
T ss_pred H
Confidence 3
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=7.7e-14 Score=134.22 Aligned_cols=139 Identities=13% Similarity=0.103 Sum_probs=86.3
Q ss_pred cccCCCccEEEeccCcCccccccccc-----CCCCCCEEeeccCcCccccC---chhhhhhccccCeEeeccCcchhhhh
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASC-----YLENLATLEVSKCHGLINLL---TLSTSESLVNLERMKMSDCKMMEEII 264 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~ 264 (363)
+..+++|++|+++++..-...+..+. ..++|++|++++|. ++... ....+..+++|+.|++++|. +.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHH
Confidence 45568999999999873222111111 35699999999883 44421 12235578999999999985 33221
Q ss_pred ccCccccccccccccccceecccccccccc-----cCCCCcccCCCCccEEeeccCCCccc-----ccCCCc-CCCCcce
Q 038945 265 QSQVGEEAEDCIVFRKLEYLGLDCLPSLTS-----FCLGNYALEFPSLEHVVVRQCPTMKI-----FSQGVV-DAPKLNK 333 (363)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~-~~~~L~~ 333 (363)
...- .......+++|++|++++| .++. ++.. ...+++|++|+++++ .+.. ++..+. ..++|++
T Consensus 244 ~~~l--~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 244 MAEL--CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRV--LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHH--HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH--HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHH--HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHH--HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCcccee
Confidence 0000 0001124789999999997 5554 3332 455899999999887 4542 222222 3479999
Q ss_pred eecccC
Q 038945 334 VKPTEE 339 (363)
Q Consensus 334 L~i~~~ 339 (363)
|+++++
T Consensus 318 L~L~~n 323 (461)
T 1z7x_W 318 LWVKSC 323 (461)
T ss_dssp EECTTS
T ss_pred eEcCCC
Confidence 999998
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=9.5e-13 Score=120.18 Aligned_cols=233 Identities=18% Similarity=0.225 Sum_probs=151.1
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHH-hhcCCCCEEEEccCCCcceecccccccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLI-RCLNNLASLEVRNCDSLEEVLHLEELNA 127 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 127 (363)
..++.+.+.++. +.............+++|++|++++| .+.+..|..++ ..+++|++|+++++.--...+......
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~- 140 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ- 140 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-
Confidence 446777777765 43211110000013567999999998 56655665522 789999999999875322111111100
Q ss_pred cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945 128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC 207 (363)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c 207 (363)
...+++|+.|+++++. +..+ .+..+..+++|+.|+++++
T Consensus 141 -----~~~~~~L~~L~Ls~n~-l~~~-----------------------------------~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 141 -----QWLKPGLKVLSIAQAH-SPAF-----------------------------------SCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp -----TTBCSCCCEEEEECCS-SCCC-----------------------------------CTTSCCCCTTCCEEECCSC
T ss_pred -----hhhccCCCEEEeeCCC-cchh-----------------------------------hHHHhccCCCCCEEECCCC
Confidence 1257889999998764 2222 1234567799999999998
Q ss_pred cCccc--cc--ccccCCCCCCEEeeccCcCccccCch--hhhhhccccCeEeeccCcchhhh-hccCccccccccccccc
Q 038945 208 SQLQK--LV--PASCYLENLATLEVSKCHGLINLLTL--STSESLVNLERMKMSDCKMMEEI-IQSQVGEEAEDCIVFRK 280 (363)
Q Consensus 208 ~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~l~~ 280 (363)
..... ++ .....+++|++|++++| .++.++.. .+++.+++|+.|+++++.. ... +. .......+++
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~p~-----~~~~~~~~~~ 252 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSL-RATVNP-----SAPRCMWSSA 252 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCC-CCCCCS-----CCSSCCCCTT
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCC-Cccchh-----hHHhccCcCc
Confidence 75432 22 23357899999999997 45544321 1346789999999999863 322 11 1112223479
Q ss_pred cceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 281 LEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 281 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
|++|+++++ .++.++.. . .++|++|+++++ +++.+|. ...+++|+.|++++|
T Consensus 253 L~~L~Ls~N-~l~~lp~~--~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 253 LNSLNLSFA-GLEQVPKG--L--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCEECCSS-CCCSCCSC--C--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred CCEEECCCC-CCCchhhh--h--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 999999986 67777665 3 379999999776 7777655 678899999999999
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=1.7e-11 Score=122.22 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=81.1
Q ss_pred cccccCCCccEEEeccCcCccc-ccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcc
Q 038945 191 ESNKVFANLKSLEISECSQLQK-LVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVG 269 (363)
Q Consensus 191 ~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 269 (363)
.....++.|+.|+++++..... .|..+..+++|++|++++| .++.+++ ..++.+++|+.|+++++. +..+
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l------ 533 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSL------ 533 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBC------
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCC------
Confidence 3456678999999998876554 4556778899999999987 5666543 236788999999999874 3333
Q ss_pred ccccccccccccceecccccccccccCCCCcccCC-CCccEEeeccCC
Q 038945 270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCP 316 (363)
Q Consensus 270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~l~~c~ 316 (363)
....+..+++|++|+++++ .+..+.... ...+ ++|+.|++++++
T Consensus 534 -~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 534 -DTFPYKCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND 578 (635)
T ss_dssp -CCGGGTTCTTCCEEECTTS-CCCBCCSSC-TTCCCTTCCEEECTTCC
T ss_pred -ChhHHhCCCCCCEEECCCC-cCCCCCHHH-HHhhhCcCCEEEeeCCC
Confidence 1223556889999999986 566665543 4455 579999997654
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=3.3e-12 Score=114.39 Aligned_cols=213 Identities=18% Similarity=0.168 Sum_probs=117.3
Q ss_pred ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccc
Q 038945 48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNA 127 (363)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 127 (363)
+..+..+++.+.. +.+... . ..+++|+.|++.++ .+... +. ++.+++|++|+++++. +..++.
T Consensus 18 ~~~l~~l~l~~~~-~~~~~~-~----~~l~~L~~L~l~~~-~i~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~------ 80 (272)
T 3rfs_A 18 FAETIKANLKKKS-VTDAVT-Q----NELNSIDQIIANNS-DIKSV-QG--IQYLPNVRYLALGGNK-LHDISA------ 80 (272)
T ss_dssp HHHHHHHHHTCSC-TTSEEC-H----HHHTTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECTTSC-CCCCGG------
T ss_pred HHHHHHHHhcCcc-cccccc-c----ccccceeeeeeCCC-Ccccc-cc--cccCCCCcEEECCCCC-CCCchh------
Confidence 3445555555544 333211 1 35677777777776 34432 22 6667777777777654 433321
Q ss_pred cccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccC
Q 038945 128 DKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISEC 207 (363)
Q Consensus 128 ~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c 207 (363)
...+++|+.|+++++. ++.+. ...+..+++|+.|++++|
T Consensus 81 -----l~~l~~L~~L~L~~n~-l~~~~-----------------------------------~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 81 -----LKELTNLTYLILTGNQ-LQSLP-----------------------------------NGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp -----GTTCTTCCEEECTTSC-CCCCC-----------------------------------TTTTTTCTTCCEEECTTS
T ss_pred -----hcCCCCCCEEECCCCc-cCccC-----------------------------------hhHhcCCcCCCEEECCCC
Confidence 2356677777777652 33221 112345577777777776
Q ss_pred cCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945 208 SQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 287 (363)
Q Consensus 208 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 287 (363)
..-...+..+..+++|++|+++++ .++.++. ..+..+++|+.|++++|. +..+. ...+..+++|+.|++.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQ-LQSLP-------EGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECC
T ss_pred cCCccCHHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCC-cCccC-------HHHhcCCccCCEEECC
Confidence 533222233556777777777776 4555443 224567777777777764 22221 1123456777777777
Q ss_pred ccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecc
Q 038945 288 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT 337 (363)
Q Consensus 288 ~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~ 337 (363)
++ .++.++... ...+++|++|++++++-. +.+++|+.+++.
T Consensus 190 ~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 190 QN-QLKSVPDGV-FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEW 230 (272)
T ss_dssp SS-CCSCCCTTT-TTTCTTCCEEECCSSCBC-------CCTTTTHHHHHH
T ss_pred CC-cCCccCHHH-HhCCcCCCEEEccCCCcc-------ccCcHHHHHHHH
Confidence 75 455444432 455677777777666322 234556555544
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.5e-11 Score=109.90 Aligned_cols=179 Identities=22% Similarity=0.255 Sum_probs=123.3
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccc
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNAD 128 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 128 (363)
+.+++|+++++. ++.++... ...+++|++|+++++ ++.. .+...+..+++|++|+++++. +..++.
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~------- 102 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKA---FHRLTKLRLLYLNDN-KLQT-LPAGIFKELKNLETLWVTDNK-LQALPI------- 102 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTS---SSSCTTCCEEECCSS-CCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCT-------
T ss_pred CCCCEEECcCCC-CCeeCHHH---hcCCCCCCEEECCCC-ccCe-eChhhhcCCCCCCEEECCCCc-CCcCCH-------
Confidence 679999999987 77755432 147899999999987 4554 555557889999999998864 544432
Q ss_pred ccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCc
Q 038945 129 KEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECS 208 (363)
Q Consensus 129 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~ 208 (363)
.....+++|+.|+++++. ++.+. ...+..+++|+.|+++++.
T Consensus 103 --~~~~~l~~L~~L~l~~n~-l~~~~-----------------------------------~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 103 --GVFDQLVNLAELRLDRNQ-LKSLP-----------------------------------PRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp --TTTTTCSSCCEEECCSSC-CCCCC-----------------------------------TTTTTTCTTCCEEECCSSC
T ss_pred --hHcccccCCCEEECCCCc-cCeeC-----------------------------------HHHhCcCcCCCEEECCCCc
Confidence 112467889999998753 33221 1224566899999999885
Q ss_pred Ccccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccc
Q 038945 209 QLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 287 (363)
Q Consensus 209 ~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 287 (363)
+..++. .+..+++|++|+++++ .++.++.. .+..+++|+.|+++++. ++.+. ...+..+++|+.|++.
T Consensus 145 -l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 145 -LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNNQ-LKRVP-------EGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECC
T ss_pred -CCccCHhHccCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCCc-CCcCC-------HHHhccccCCCEEEec
Confidence 444443 3567899999999886 45555542 35678899999999874 33331 1224568889999998
Q ss_pred ccc
Q 038945 288 CLP 290 (363)
Q Consensus 288 ~c~ 290 (363)
+++
T Consensus 214 ~N~ 216 (270)
T 2o6q_A 214 ENP 216 (270)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=6e-14 Score=134.96 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=143.4
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCC----CccEE
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFN----NLRHL 82 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~----~L~~L 82 (363)
+..+++|++|+++. ..+.. ....++..+..+++|++|+++++. +.+..... +. ..++ +|++|
T Consensus 24 ~~~~~~L~~L~L~~----------~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~-l~-~~l~~~~~~L~~L 90 (461)
T 1z7x_W 24 LPLLQQCQVVRLDD----------CGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC-VL-QGLQTPSCKIQKL 90 (461)
T ss_dssp HHHHTTCSEEEEES----------SCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH-HH-HTTCSTTCCCCEE
T ss_pred HhhcCCccEEEccC----------CCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH-HH-HHHhhCCCceeEE
Confidence 34577888888882 23332 234566667777889999998876 65421110 00 1233 78899
Q ss_pred EecCCCCCcc----cCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCccc
Q 038945 83 VLDDCKNMSS----AIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTG 158 (363)
Q Consensus 83 ~l~~c~~l~~----~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 158 (363)
++++|. +.+ ..+. .+..+++|++|+++++. +....... . ........++|+.|++++|. +.....
T Consensus 91 ~L~~n~-i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-i~~~~~~~-l---~~~l~~~~~~L~~L~L~~n~-l~~~~~--- 159 (461)
T 1z7x_W 91 SLQNCC-LTGAGCGVLSS-TLRTLPTLQELHLSDNL-LGDAGLQL-L---CEGLLDPQCRLEKLQLEYCS-LSAASC--- 159 (461)
T ss_dssp ECTTSC-CBGGGHHHHHH-HTTSCTTCCEEECCSSB-CHHHHHHH-H---HHHHTSTTCCCCEEECTTSC-CBGGGH---
T ss_pred EccCCC-CCHHHHHHHHH-HHccCCceeEEECCCCc-CchHHHHH-H---HHHHhcCCCcceEEECCCCC-CCHHHH---
Confidence 998884 543 1233 37778888999888765 43211000 0 00001124467777776652 221000
Q ss_pred chhhhhhhccccch----------h---------------hHH-HHHHhhhhhhhh----cccccccCCCccEEEeccCc
Q 038945 159 NIIELLECNFIRIK----------S---------------NLM-TRLFALQHLLKE----NAESNKVFANLKSLEISECS 208 (363)
Q Consensus 159 ~~L~~l~~~~~~l~----------~---------------~L~-l~~~~~~~l~~~----~~~~l~~l~~L~~L~l~~c~ 208 (363)
..+...-..++++. . .|+ +.+. ..+++.. .+..+..+++|++|++++|.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE-SCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT-TSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc-CCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 00000001112221 0 000 0000 0011111 12233445666666666664
Q ss_pred Ccccc-----cc-cccCCCCCCEEeeccCcCccccCc---hhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945 209 QLQKL-----VP-ASCYLENLATLEVSKCHGLINLLT---LSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR 279 (363)
Q Consensus 209 ~l~~l-----~~-~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 279 (363)
+... .. ....+++|++|++++| .++.... ...+..+++|+.|+++++..-...... -... .....+
T Consensus 239 -l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~--l~~~~~ 313 (461)
T 1z7x_W 239 -LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL-LCET--LLEPGC 313 (461)
T ss_dssp -CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH-HHHH--HTSTTC
T ss_pred -CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH-HHHH--hccCCc
Confidence 2211 11 1123566777777666 3443210 112345677777777766421111000 0000 001235
Q ss_pred ccceecccccccccccCCC---CcccCCCCccEEeeccCCCccccc-CCCc-----CCCCcceeecccC
Q 038945 280 KLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCPTMKIFS-QGVV-----DAPKLNKVKPTEE 339 (363)
Q Consensus 280 ~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~~l~~l~-~~~~-----~~~~L~~L~i~~~ 339 (363)
+|++|++++|. +...... .....+++|++|++++| .++... ..+. ..++|++|++++|
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 78888888764 3322110 01344688888888777 555332 1111 2678888888888
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=6.3e-13 Score=121.51 Aligned_cols=229 Identities=17% Similarity=0.076 Sum_probs=152.3
Q ss_pred ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHh-------hcCCCCEEEEccCCCcce
Q 038945 46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIR-------CLNNLASLEVRNCDSLEE 118 (363)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~-------~l~~L~~L~l~~~~~l~~ 118 (363)
...++|++|+++++. + .+|... ...|++|+++++.--....|.. +. ++++|++|+++++.--..
T Consensus 40 ~~~~~L~~l~l~~n~-l-~~p~~~------~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDT-E-ADLGQF------TDIIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEECTTHHHHCCT-T-CCCHHH------HHHHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred ccCCCceeEeecccc-c-ccHHHH------HHHHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccch
Confidence 345779999999887 5 545433 1238888888763212234443 33 689999999998753223
Q ss_pred ecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhccccccc---
Q 038945 119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKV--- 195 (363)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~--- 195 (363)
++... ....+++|+.|+++++. +..++ ..+..
T Consensus 111 ~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~~------------------------------------~~~~~l~~ 145 (312)
T 1wwl_A 111 APPPL--------LEATGPDLNILNLRNVS-WATRD------------------------------------AWLAELQQ 145 (312)
T ss_dssp CCCCS--------SSCCSCCCSEEEEESCB-CSSSS------------------------------------SHHHHHHT
T ss_pred hHHHH--------HHhcCCCccEEEccCCC-Ccchh------------------------------------HHHHHHHH
Confidence 33110 02478899999999763 43321 01111
Q ss_pred --CCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccC--chhhhhhccccCeEeeccCcch--hhhhccCcc
Q 038945 196 --FANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLL--TLSTSESLVNLERMKMSDCKMM--EEIIQSQVG 269 (363)
Q Consensus 196 --l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l--~~~~~~~~~ 269 (363)
+++|+.|+++++..-...+..+..+++|++|+++++.-....+ ....+..+++|+.|++++|..- ..+..
T Consensus 146 ~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---- 221 (312)
T 1wwl_A 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS---- 221 (312)
T ss_dssp TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH----
T ss_pred hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH----
Confidence 2899999999997544445678889999999999986443321 1112268899999999998532 12211
Q ss_pred ccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 270 EEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 270 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
..+..+++|++|+++++ .++..........+++|++|++++| .++.+|..+. ++|+.|++++|
T Consensus 222 ---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 222 ---ALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp ---HHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS
T ss_pred ---HHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC
Confidence 11235789999999996 4555442222455789999999877 6778887776 89999999999
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.34 E-value=1.3e-11 Score=111.70 Aligned_cols=199 Identities=17% Similarity=0.155 Sum_probs=126.8
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
+..+++++.+++.. ..+..+|..+ .+.++.|+++++. ++.++... + ..+++|++|+++++
T Consensus 6 ~~~l~~l~~l~~~~--------------~~l~~ip~~~--~~~l~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 6 VSKVASHLEVNCDK--------------RNLTALPPDL--PKDTTILHLSENL-LYTFSLAT-L--MPYTRLTQLNLDRA 65 (290)
T ss_dssp EECSTTCCEEECTT--------------SCCSSCCSCC--CTTCCEEECTTSC-CSEEEGGG-G--TTCTTCCEEECTTS
T ss_pred ccccCCccEEECCC--------------CCCCcCCCCC--CCCCCEEEcCCCc-CCccCHHH-h--hcCCCCCEEECCCC
Confidence 56788889988881 2233455444 2678999999887 76654322 1 47889999999887
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN 167 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~ 167 (363)
++....+ .+.+++|++|+++++. +..++.. ...+++|+.|+++++ +++.+.
T Consensus 66 -~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~----------~~~l~~L~~L~l~~N-~l~~l~------------- 116 (290)
T 1p9a_G 66 -ELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLL----------GQTLPALTVLDVSFN-RLTSLP------------- 116 (290)
T ss_dssp -CCCEEEC---CSCCTTCCEEECCSSC-CSSCCCC----------TTTCTTCCEEECCSS-CCCCCC-------------
T ss_pred -ccCcccC---CCCCCcCCEEECCCCc-CCcCchh----------hccCCCCCEEECCCC-cCcccC-------------
Confidence 4665433 3678899999998763 5544321 246778888888865 233321
Q ss_pred cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhc
Q 038945 168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESL 246 (363)
Q Consensus 168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 246 (363)
...+..+++|+.|+++++. +..++. .+..+++|+.|+++++ .++.++. ..+..+
T Consensus 117 ----------------------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l 171 (290)
T 1p9a_G 117 ----------------------LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPA-GLLNGL 171 (290)
T ss_dssp ----------------------SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCT-TTTTTC
T ss_pred ----------------------HHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCH-HHhcCc
Confidence 1234556788888888875 334433 3456778888888775 4666554 234567
Q ss_pred cccCeEeeccCcchhhhhccCccccccccccccccceeccccc
Q 038945 247 VNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 289 (363)
Q Consensus 247 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 289 (363)
++|+.|+++++. ++.++. .+...++|+.+++.++
T Consensus 172 ~~L~~L~L~~N~-l~~ip~--------~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 172 ENLDTLLLQENS-LYTIPK--------GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECCSSC-CCCCCT--------TTTTTCCCSEEECCSC
T ss_pred CCCCEEECCCCc-CCccCh--------hhcccccCCeEEeCCC
Confidence 888888887764 333321 1334557777777754
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=4.1e-12 Score=118.54 Aligned_cols=247 Identities=14% Similarity=0.028 Sum_probs=140.3
Q ss_pred cccccccceEecccCcCcccccccCcC--CCCCCC-CccEEEecCCCCCcccCchhHHhhc-----CCCCEEEEccCCCc
Q 038945 45 MIGFRDIENIKLSLFPRLKEIWHNQAL--PVSFFN-NLRHLVLDDCKNMSSAIPANLIRCL-----NNLASLEVRNCDSL 116 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l--~~~~l~-~L~~L~l~~c~~l~~~~p~~~l~~l-----~~L~~L~l~~~~~l 116 (363)
....++|++|+++++. ++..+... + ....++ +|++|++++| ++....+.. +..+ ++|++|++++|. +
T Consensus 18 ~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN-LYSISTVE-LIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHH-HHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-G
T ss_pred HhCCCCceEEEccCCC-CChHHHHH-HHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-C
Confidence 3334559999999887 77644210 0 003566 8999999988 566655544 4544 889999998875 4
Q ss_pred ceecccccccccccccCCCC-CccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhccccccc
Q 038945 117 EEVLHLEELNADKEHLCPLF-PKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKV 195 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~ 195 (363)
....... .......+ ++|+.|+++++. +..... ..+ ...+..
T Consensus 93 ~~~~~~~-----l~~~l~~~~~~L~~L~Ls~N~-l~~~~~------~~l-------------------------~~~l~~ 135 (362)
T 3goz_A 93 SYKSSDE-----LVKTLAAIPFTITVLDLGWND-FSSKSS------SEF-------------------------KQAFSN 135 (362)
T ss_dssp GGSCHHH-----HHHHHHTSCTTCCEEECCSSC-GGGSCH------HHH-------------------------HHHHTT
T ss_pred ChHHHHH-----HHHHHHhCCCCccEEECcCCc-CCcHHH------HHH-------------------------HHHHHh
Confidence 3322100 00001123 688888888774 333210 000 111222
Q ss_pred C-CCccEEEeccCcCcc----cccccccCCC-CCCEEeeccCcCccccCchh---hhhhc-cccCeEeeccCcchhhhhc
Q 038945 196 F-ANLKSLEISECSQLQ----KLVPASCYLE-NLATLEVSKCHGLINLLTLS---TSESL-VNLERMKMSDCKMMEEIIQ 265 (363)
Q Consensus 196 l-~~L~~L~l~~c~~l~----~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~---~~~~l-~~L~~L~l~~c~~l~~~~~ 265 (363)
+ ++|++|++++|..-. .++..+..++ +|++|++++| .++...... .+..+ ++|+.|++++|. +.+...
T Consensus 136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~ 213 (362)
T 3goz_A 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSY 213 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCH
T ss_pred CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHH
Confidence 2 588888888875332 2222333444 8889998887 454443221 22344 488899988875 222000
Q ss_pred cCcccccccccc-ccccceecccccccccccCCC---CcccCCCCccEEeeccCC-------CcccccCCCcCCCCccee
Q 038945 266 SQVGEEAEDCIV-FRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCP-------TMKIFSQGVVDAPKLNKV 334 (363)
Q Consensus 266 ~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L 334 (363)
. .-...+.. .++|++|+++++ .+.+.... .....+++|++|++++|. .+..++.....+++|+.|
T Consensus 214 ~---~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 214 A---ELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp H---HHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred H---HHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence 0 00011222 348888888886 45443221 113456789999988875 134455566688888899
Q ss_pred ecccC
Q 038945 335 KPTEE 339 (363)
Q Consensus 335 ~i~~~ 339 (363)
++++|
T Consensus 290 dL~~N 294 (362)
T 3goz_A 290 DKNGK 294 (362)
T ss_dssp CTTSC
T ss_pred ecCCC
Confidence 99888
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=4.2e-11 Score=101.79 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=27.9
Q ss_pred ccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 48 FRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 48 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
+++|++|+++++. ++.++ +. ..+++|++|++++| .+... + . +..+++|++|+++++
T Consensus 43 l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~-~-~-l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNY-N-P-ISGLSNLERLRIMGK 98 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCC-G-G-GTTCTTCCEEEEECT
T ss_pred cCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcc-h-h-hhcCCCCCEEEeECC
Confidence 4555555555554 44443 22 24555555655555 33321 1 1 455555555555554
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=4.8e-12 Score=119.03 Aligned_cols=274 Identities=13% Similarity=0.084 Sum_probs=166.8
Q ss_pred cccccccCCCceeEEEeeecccceeeeccCCCc-hhhhhhhccccccccceEecccCcCcccc----cccCc-C--CCCC
Q 038945 4 FSLGILSTPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEI----WHNQA-L--PVSF 75 (363)
Q Consensus 4 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~-l--~~~~ 75 (363)
++..+..+++|++|+++ +..+.. ....++..+..+++|++|++++|. +..+ |.+.. + ....
T Consensus 24 l~~~l~~~~~L~~L~L~----------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS----------GNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp TSHHHHHCSCCCEEECT----------TSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCccEEECC----------CCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhh
Confidence 44556778999999999 222322 233455567778999999999974 3321 11110 0 0136
Q ss_pred CCCccEEEecCCCCCcc----cCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCC---------Ccccee
Q 038945 76 FNNLRHLVLDDCKNMSS----AIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLF---------PKLFSL 142 (363)
Q Consensus 76 l~~L~~L~l~~c~~l~~----~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l---------~~L~~L 142 (363)
+++|++|++++| .+.. .++.. +..+++|++|++++|. +....... ... ....+ ++|+.|
T Consensus 93 ~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-l~~~~~~~-l~~----~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 93 CPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAK-IAR----ALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHH-HHH----HHHHHHHHHHHHTCCCCCEE
T ss_pred CCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCC-CCHHHHHH-HHH----HHHHHhhhhhcccCCCCcEE
Confidence 899999999998 4554 23333 7889999999999886 33211100 000 00112 799999
Q ss_pred ecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc----cccc-cc
Q 038945 143 RLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ----KLVP-AS 217 (363)
Q Consensus 143 ~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~----~l~~-~~ 217 (363)
+++++. +... .+ + .....+..+++|+.|++++|..-. .+.. .+
T Consensus 165 ~L~~n~-l~~~------~~-------~------------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l 212 (386)
T 2ca6_A 165 ICGRNR-LENG------SM-------K------------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212 (386)
T ss_dssp ECCSSC-CTGG------GH-------H------------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred ECCCCC-CCcH------HH-------H------------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh
Confidence 999874 2210 00 0 001234455899999999986321 1223 66
Q ss_pred cCCCCCCEEeeccCcCc-----cccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc--ccccccceecccccc
Q 038945 218 CYLENLATLEVSKCHGL-----INLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC--IVFRKLEYLGLDCLP 290 (363)
Q Consensus 218 ~~~~~L~~L~l~~c~~l-----~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~ 290 (363)
..+++|++|++++|. + ..++ ..+..+++|+.|++++|..-...... -...+ ..+++|++|++++|.
T Consensus 213 ~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 213 AYCQELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCLLSARGAAA----VVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GGCTTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCCCCHHHHHH----HHHHHHTCSSCCCCEEECCSSC
T ss_pred hcCCCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCCCchhhHHH----HHHHHhhccCCCeEEEECcCCc
Confidence 789999999999875 4 3333 23567899999999998732221000 00112 237899999999974
Q ss_pred cccc-----cCCCCcc-cCCCCccEEeeccCCCccccc---CCCc-CCCCcceeecccC
Q 038945 291 SLTS-----FCLGNYA-LEFPSLEHVVVRQCPTMKIFS---QGVV-DAPKLNKVKPTEE 339 (363)
Q Consensus 291 ~L~~-----~~~~~~~-~~~~~L~~L~l~~c~~l~~l~---~~~~-~~~~L~~L~i~~~ 339 (363)
+.. ++.. . ..+++|++|++++|+ ++... ..+. .+++++.+++.+.
T Consensus 286 -i~~~g~~~l~~~--l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 286 -IELDAVRTLKTV--IDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp -CBHHHHHHHHHH--HHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred -CCHHHHHHHHHH--HHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhhc
Confidence 444 4433 3 458999999998874 43222 2222 4566666666554
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=4.7e-11 Score=107.93 Aligned_cols=167 Identities=17% Similarity=0.250 Sum_probs=89.5
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
.+++|++|+++++. ++.++. . ..+++|++|++++| ++.+..+ +..+++|++|+++++. +..++.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~----- 107 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-I----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSS----- 107 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-G----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGG-----
T ss_pred hcCcccEEEccCCC-cccChh-H----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChh-----
Confidence 35667777777665 555432 2 35677777777766 4454333 6667777777776653 433322
Q ss_pred ccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEecc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISE 206 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 206 (363)
...+++|+.|+++++. +..+ +.+..+++|+.|++++
T Consensus 108 ------l~~l~~L~~L~L~~n~-i~~~-------------------------------------~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 108 ------LKDLKKLKSLSLEHNG-ISDI-------------------------------------NGLVHLPQLESLYLGN 143 (291)
T ss_dssp ------GTTCTTCCEEECTTSC-CCCC-------------------------------------GGGGGCTTCCEEECCS
T ss_pred ------hccCCCCCEEECCCCc-CCCC-------------------------------------hhhcCCCCCCEEEccC
Confidence 2345666666666552 2221 1233446666666666
Q ss_pred CcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecc
Q 038945 207 CSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 286 (363)
Q Consensus 207 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 286 (363)
|. +..+ ..+..+++|++|++++| .++.++. +..+++|+.|++++|. ++.+ ..+..+++|+.|++
T Consensus 144 n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l---------~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 144 NK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDL---------RALAGLKNLDVLEL 207 (291)
T ss_dssp SC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBC---------GGGTTCTTCSEEEE
T ss_pred Cc-CCcc-hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCC---------hhhccCCCCCEEEC
Confidence 54 2333 33455666666666665 3444332 4456666666666653 2211 11344566666666
Q ss_pred ccc
Q 038945 287 DCL 289 (363)
Q Consensus 287 ~~c 289 (363)
+++
T Consensus 208 ~~n 210 (291)
T 1h6t_A 208 FSQ 210 (291)
T ss_dssp EEE
T ss_pred cCC
Confidence 654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=5.2e-11 Score=107.69 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=125.7
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
..+++|++|.++. . .+..++ .+..+++|++|+++++. ++.++. . ..+++|++|++++|
T Consensus 43 ~~l~~L~~L~l~~----------~----~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l----~~l~~L~~L~l~~n- 100 (291)
T 1h6t_A 43 NELNSIDQIIANN----------S----DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-L----ANLKNLGWLFLDEN- 100 (291)
T ss_dssp HHHHTCCEEECTT----------S----CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-
T ss_pred hhcCcccEEEccC----------C----CcccCh-hHhcCCCCCEEEccCCc-cCCCcc-c----ccCCCCCEEECCCC-
Confidence 4577888888881 1 122222 35668999999999987 777554 3 58999999999998
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF 168 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~ 168 (363)
.+.. ++. +..+++|++|++++|. +..++. ...+++|+.|+++++. ++.+
T Consensus 101 ~l~~-~~~--l~~l~~L~~L~L~~n~-i~~~~~-----------l~~l~~L~~L~l~~n~-l~~~--------------- 149 (291)
T 1h6t_A 101 KVKD-LSS--LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNNK-ITDI--------------- 149 (291)
T ss_dssp CCCC-GGG--GTTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCCEEECCSSC-CCCC---------------
T ss_pred cCCC-Chh--hccCCCCCEEECCCCc-CCCChh-----------hcCCCCCCEEEccCCc-CCcc---------------
Confidence 4665 333 8899999999999874 555432 2367899999998763 3322
Q ss_pred ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccc
Q 038945 169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN 248 (363)
Q Consensus 169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 248 (363)
+.+..+++|+.|++++|. +..++. +..+++|++|+++++ .++.++. +..+++
T Consensus 150 ----------------------~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~ 201 (291)
T 1h6t_A 150 ----------------------TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKN 201 (291)
T ss_dssp ----------------------GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTT
T ss_pred ----------------------hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC-cCCCChh---hccCCC
Confidence 234566999999999985 445544 778999999999987 5666643 678999
Q ss_pred cCeEeeccCcc
Q 038945 249 LERMKMSDCKM 259 (363)
Q Consensus 249 L~~L~l~~c~~ 259 (363)
|+.|++++++.
T Consensus 202 L~~L~l~~n~i 212 (291)
T 1h6t_A 202 LDVLELFSQEC 212 (291)
T ss_dssp CSEEEEEEEEE
T ss_pred CCEEECcCCcc
Confidence 99999998763
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=6.2e-11 Score=108.06 Aligned_cols=205 Identities=15% Similarity=0.125 Sum_probs=132.0
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCc---hhHHhhcCCCCEEEEccCCCcceecccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIP---ANLIRCLNNLASLEVRNCDSLEEVLHLE 123 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p---~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 123 (363)
.++.|++|+++++. +....... +....+++|++|+++++. +....+ ...+..+++|++|++++|. +..++..
T Consensus 89 ~~~~L~~L~l~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~- 163 (310)
T 4glp_A 89 AYSRLKELTLEDLK-ITGTMPPL-PLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCE- 163 (310)
T ss_dssp HHSCCCEEEEESCC-CBSCCCCC-SSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTT-
T ss_pred ccCceeEEEeeCCE-eccchhhh-hhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHH-
Confidence 35679999999987 65422221 110468999999999984 444333 1224569999999999875 4433211
Q ss_pred cccccccccCCCCCccceeeccccccccc--ccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccE
Q 038945 124 ELNADKEHLCPLFPKLFSLRLIDLPKLKR--FCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKS 201 (363)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~~~~~L~~--l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~ 201 (363)
....+++|+.|+++++.-... +. ....+..+++|+.
T Consensus 164 --------~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------------~~~~~~~l~~L~~ 201 (310)
T 4glp_A 164 --------QVRAFPALTSLDLSDNPGLGERGLM----------------------------------AALCPHKFPAIQN 201 (310)
T ss_dssp --------SCCCCTTCCEEECCSCTTCHHHHHH----------------------------------TTSCTTSSCCCCS
T ss_pred --------HhccCCCCCEEECCCCCCccchhhh----------------------------------HHHhhhcCCCCCE
Confidence 134688999999998752211 10 0111245689999
Q ss_pred EEeccCcCcccccc----cccCCCCCCEEeeccCcCcccc-Cch-hhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 202 LEISECSQLQKLVP----ASCYLENLATLEVSKCHGLINL-LTL-STSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 202 L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~~-~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
|++++|. ++.++. .+..+++|++|+++++. ++.. |.. .....+++|+.|++++|. ++.++..
T Consensus 202 L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~--------- 269 (310)
T 4glp_A 202 LALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG--------- 269 (310)
T ss_dssp CBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC---------
T ss_pred EECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhhh---------
Confidence 9999985 343332 13567999999999874 4444 321 111223799999999875 3333221
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 315 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 315 (363)
.+++|+.|+++++ .++.++. ...+++|+.|+++++
T Consensus 270 -~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 270 -LPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp -CCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSST
T ss_pred -hcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCC
Confidence 1379999999986 5665543 456899999999776
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=1.4e-10 Score=102.30 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=103.1
Q ss_pred hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945 38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE 117 (363)
Q Consensus 38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~ 117 (363)
+..+|..+. +.+++|+++++. +..++... ...+++|++|+++++ ++....+ ..+..+++|++|+++++. +.
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~ 96 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTG-LATLSDAT---FRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQ-LA 96 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CC
T ss_pred ccccCCCCC--CCCCEEEccCCC-cCccCHhH---hcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCc-cc
Confidence 334444433 578888888876 66544322 146788888888887 5565444 337778888888888754 44
Q ss_pred eecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC
Q 038945 118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA 197 (363)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~ 197 (363)
.++. .....+++|+.|+++++ +++.+. ...+..++
T Consensus 97 ~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~-----------------------------------~~~~~~l~ 131 (251)
T 3m19_A 97 SLPL---------GVFDHLTQLDKLYLGGN-QLKSLP-----------------------------------SGVFDRLT 131 (251)
T ss_dssp CCCT---------TTTTTCTTCCEEECCSS-CCCCCC-----------------------------------TTTTTTCT
T ss_pred ccCh---------hHhcccCCCCEEEcCCC-cCCCcC-----------------------------------hhHhccCC
Confidence 4331 11235678888888765 343321 11234567
Q ss_pred CccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 198 NLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 198 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
+|+.|+++++. +..++. .+..+++|++|+++++ .++.++. ..+..+++|+.|++++++
T Consensus 132 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 132 KLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred cccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 88888888774 444444 4667788888888776 4555543 235677888888887765
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=9.1e-11 Score=99.65 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 74 SFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 74 ~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
..+++|++|+++++ ++.. .| . +..+++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~n-~i~~-l~-~-l~~l~~L~~L~l~~n 76 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTD-LT-G-IEYAHNIKDLTINNI 76 (197)
T ss_dssp HHHHTCCEEEEESS-CCSC-CT-T-GGGCTTCSEEEEESC
T ss_pred hhcCCccEEeccCC-CccC-hH-H-HhcCCCCCEEEccCC
Confidence 35777778887776 4443 33 2 667777777777776
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=9.5e-11 Score=116.44 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=44.5
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
.+++|+.|+++++. +..++ .. ..+++|+.|++++| ++....+ +..+++|+.|++++|. +..++.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~----- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSS----- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-TG----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTT-----
T ss_pred cCCCCCEEECcCCC-CCCCh-HH----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChh-----
Confidence 35666666666665 55543 12 35666777777666 3444333 5666677777776653 433321
Q ss_pred ccccccCCCCCccceeecccc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~ 147 (363)
...+++|+.|+++++
T Consensus 105 ------l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 105 ------LKDLKKLKSLSLEHN 119 (605)
T ss_dssp ------STTCTTCCEEECTTS
T ss_pred ------hccCCCCCEEEecCC
Confidence 234566666666654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=5.6e-11 Score=118.06 Aligned_cols=170 Identities=19% Similarity=0.255 Sum_probs=123.7
Q ss_pred ccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCC
Q 038945 9 LSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCK 88 (363)
Q Consensus 9 ~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~ 88 (363)
..+++|+.|.++. ..+..++ .+..+++|+.|+|+++. +..++. . ..+++|++|++++|
T Consensus 40 ~~L~~L~~L~l~~--------------n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l----~~l~~L~~L~Ls~N- 97 (605)
T 1m9s_A 40 NELNSIDQIIANN--------------SDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-L----TNLKNLGWLFLDEN- 97 (605)
T ss_dssp HHHTTCCCCBCTT--------------CCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-G----GGCTTCCEEECCSS-
T ss_pred hcCCCCCEEECcC--------------CCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-h----ccCCCCCEEECcCC-
Confidence 4566777777761 1222333 46678999999999987 777554 3 58999999999998
Q ss_pred CCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhcc
Q 038945 89 NMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNF 168 (363)
Q Consensus 89 ~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~ 168 (363)
.+.. ++. +..+++|+.|++++|. +..++. ...+++|+.|+++++. +..+
T Consensus 98 ~l~~-l~~--l~~l~~L~~L~Ls~N~-l~~l~~-----------l~~l~~L~~L~Ls~N~-l~~l--------------- 146 (605)
T 1m9s_A 98 KIKD-LSS--LKDLKKLKSLSLEHNG-ISDING-----------LVHLPQLESLYLGNNK-ITDI--------------- 146 (605)
T ss_dssp CCCC-CTT--STTCTTCCEEECTTSC-CCCCGG-----------GGGCTTCSEEECCSSC-CCCC---------------
T ss_pred CCCC-Chh--hccCCCCCEEEecCCC-CCCCcc-----------ccCCCccCEEECCCCc-cCCc---------------
Confidence 5665 332 8889999999999875 554432 2367899999998763 3322
Q ss_pred ccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccc
Q 038945 169 IRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVN 248 (363)
Q Consensus 169 ~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 248 (363)
+.+..+++|+.|++++|. +..+++ +..+++|+.|++++| .+..++ .+..+++
T Consensus 147 ----------------------~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~ 198 (605)
T 1m9s_A 147 ----------------------TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKN 198 (605)
T ss_dssp ----------------------GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTT
T ss_pred ----------------------hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh---HHccCCC
Confidence 235567899999999986 444433 778999999999987 556553 2678899
Q ss_pred cCeEeeccCcc
Q 038945 249 LERMKMSDCKM 259 (363)
Q Consensus 249 L~~L~l~~c~~ 259 (363)
|+.|++++|+.
T Consensus 199 L~~L~L~~N~l 209 (605)
T 1m9s_A 199 LDVLELFSQEC 209 (605)
T ss_dssp CSEEECCSEEE
T ss_pred CCEEEccCCcC
Confidence 99999998864
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=1.5e-09 Score=95.67 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=31.3
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC-CCcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~i~~~ 339 (363)
.+++|+.|+++++ .++.++.+. +..+++|++|+++++ .++.++. .+..+++|+.|++++|
T Consensus 129 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 129 RLTKLKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCcccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 3455555555553 444444322 344566666666544 4444443 3345666666666666
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=3e-11 Score=112.69 Aligned_cols=248 Identities=13% Similarity=0.015 Sum_probs=140.9
Q ss_pred CCCceeEEEeeecccceeeeccCCCc-hhhhhhhcccccc-ccceEecccCcCcccccccCcCC---CCCCCCccEEEec
Q 038945 11 TPKLHKVQVTVKEEGELYHREGNLNS-TIQKCYIEMIGFR-DIENIKLSLFPRLKEIWHNQALP---VSFFNNLRHLVLD 85 (363)
Q Consensus 11 ~~~L~~l~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~l~---~~~l~~L~~L~l~ 85 (363)
.++|++|+++. ..+.. ....+...+..++ +|++|++++|. ++...... +. ...+++|++|+++
T Consensus 21 ~~~L~~L~Ls~----------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 21 PHGVTSLDLSL----------NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDE-LVQILAAIPANVTSLNLS 88 (362)
T ss_dssp CTTCCEEECTT----------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHH-HHHHHHTSCTTCCEEECC
T ss_pred CCCceEEEccC----------CCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHH-HHHHHhccCCCccEEECc
Confidence 44599999992 22222 1222335566677 89999999996 77632211 10 0123899999999
Q ss_pred CCCCCcccCchhH---Hhhc-CCCCEEEEccCCCcceecccccccccccccCCC-CCccceeecccccccccccCcccch
Q 038945 86 DCKNMSSAIPANL---IRCL-NNLASLEVRNCDSLEEVLHLEELNADKEHLCPL-FPKLFSLRLIDLPKLKRFCNFTGNI 160 (363)
Q Consensus 86 ~c~~l~~~~p~~~---l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~L~~l~~~~~~~ 160 (363)
+| .+....+..+ +..+ ++|++|++++|. +...+...- ...... .++|+.|+++++. +.+. +
T Consensus 89 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l-----~~~l~~~~~~L~~L~Ls~N~-l~~~------~ 154 (362)
T 3goz_A 89 GN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEF-----KQAFSNLPASITSLNLRGND-LGIK------S 154 (362)
T ss_dssp SS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHH-----HHHHTTSCTTCCEEECTTSC-GGGS------C
T ss_pred CC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHH-----HHHHHhCCCceeEEEccCCc-CCHH------H
Confidence 98 4666555442 2233 899999999876 544332110 000112 3589999999863 3321 0
Q ss_pred hhhhhhccccchhhHHHHHHhhhhhhhhcccccccCC-CccEEEeccCcCcccccc----cccCC-CCCCEEeeccCcCc
Q 038945 161 IELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFA-NLKSLEISECSQLQKLVP----ASCYL-ENLATLEVSKCHGL 234 (363)
Q Consensus 161 L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~-~L~~L~l~~c~~l~~l~~----~~~~~-~~L~~L~l~~c~~l 234 (363)
...+ ...+..++ +|+.|++++|..-...+. .+..+ ++|++|+++++. +
T Consensus 155 ~~~l-------------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i 208 (362)
T 3goz_A 155 SDEL-------------------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-L 208 (362)
T ss_dssp HHHH-------------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-G
T ss_pred HHHH-------------------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-C
Confidence 0000 11122334 899999998863322221 23345 589999998874 5
Q ss_pred cccCch---hhhhh-ccccCeEeeccCcchhhhhccCccccccccccccccceecccccc-------cccccCCCCcccC
Q 038945 235 INLLTL---STSES-LVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP-------SLTSFCLGNYALE 303 (363)
Q Consensus 235 ~~~~~~---~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~-------~L~~~~~~~~~~~ 303 (363)
+..... ..+.. .++|+.|++++|.. .+.... .-...+..+++|+.|++++|. .+..+... ...
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~---~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~--~~~ 282 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLE---NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA--FPN 282 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCHH---HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT--STT
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHHH---HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH--hcc
Confidence 542211 11233 35899999998752 211000 000113457889999998874 12223222 445
Q ss_pred CCCccEEeeccCC
Q 038945 304 FPSLEHVVVRQCP 316 (363)
Q Consensus 304 ~~~L~~L~l~~c~ 316 (363)
+++|+.|+++++.
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 6778888887664
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=6.6e-10 Score=98.87 Aligned_cols=147 Identities=22% Similarity=0.295 Sum_probs=77.3
Q ss_pred cccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccc
Q 038945 45 MIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEE 124 (363)
Q Consensus 45 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 124 (363)
+..+++|++|+++++. ++.++ .. ..+++|++|++++| ++.+..+ +..+++|++|+++++. +..++..
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~-- 103 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKNLNGI-- 103 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSCCTTC--
T ss_pred hhhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCCcCcc--
Confidence 3445666666666664 55544 22 35666677776665 4454333 5666666666666653 4333211
Q ss_pred ccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEe
Q 038945 125 LNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEI 204 (363)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l 204 (363)
.. ++|+.|+++++ +++.+ +.+..+++|+.|++
T Consensus 104 ---------~~-~~L~~L~L~~N-~l~~~-------------------------------------~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 104 ---------PS-ACLSRLFLDNN-ELRDT-------------------------------------DSLIHLKNLEILSI 135 (263)
T ss_dssp ---------CC-SSCCEEECCSS-CCSBS-------------------------------------GGGTTCTTCCEEEC
T ss_pred ---------cc-CcccEEEccCC-ccCCC-------------------------------------hhhcCcccccEEEC
Confidence 11 56666666654 22221 12334466666666
Q ss_pred ccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 205 SECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 205 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
+++. ++.++ .+..+++|+.|+++++ .++.+ ..+..+++|+.|++++++
T Consensus 136 s~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 136 RNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred CCCc-CCCCh-HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 6654 33332 3445666666666664 23333 124455666666666554
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=5.1e-09 Score=89.42 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
++|+.|+++++. +..++. .+..+++|++|+++++ .++.++. ..+..+++|+.|++++++
T Consensus 100 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred cCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence 445555554443 222222 2344556666666554 3333332 223455666666666553
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.02 E-value=3.8e-09 Score=104.01 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=96.1
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK 129 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 129 (363)
+|++|+++++. ++.+|... +++|++|+++++ +++. +| ..+++|++|+++++ .+..++.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l------~~~L~~L~Ls~N-~l~~-ip----~~l~~L~~L~Ls~N-~l~~ip~-------- 117 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL------PPQITVLEITQN-ALIS-LP----ELPASLEYLDACDN-RLSTLPE-------- 117 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC------CTTCSEEECCSS-CCSC-CC----CCCTTCCEEECCSS-CCSCCCC--------
T ss_pred CccEEEeCCCC-CCccCHhH------cCCCCEEECcCC-CCcc-cc----cccCCCCEEEccCC-CCCCcch--------
Confidence 67888888775 66644333 467888888776 4553 44 23677888888775 3444432
Q ss_pred cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945 130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ 209 (363)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~ 209 (363)
-..+|+.|+++++. ++.++. .+++|+.|+++++.
T Consensus 118 -----l~~~L~~L~Ls~N~-l~~lp~---------------------------------------~l~~L~~L~Ls~N~- 151 (571)
T 3cvr_A 118 -----LPASLKHLDVDNNQ-LTMLPE---------------------------------------LPALLEYINADNNQ- 151 (571)
T ss_dssp -----CCTTCCEEECCSSC-CSCCCC---------------------------------------CCTTCCEEECCSSC-
T ss_pred -----hhcCCCEEECCCCc-CCCCCC---------------------------------------cCccccEEeCCCCc-
Confidence 01167777777542 332211 23677777777664
Q ss_pred cccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccc
Q 038945 210 LQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 289 (363)
Q Consensus 210 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 289 (363)
++.+|. .+++|++|+++++ .++.+|. +. ++|+.|+++++. ++.++.. .. ......+.|+.|+++++
T Consensus 152 l~~lp~---~l~~L~~L~Ls~N-~L~~lp~---l~--~~L~~L~Ls~N~-L~~lp~~--~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 152 LTMLPE---LPTSLEVLSVRNN-QLTFLPE---LP--ESLEALDVSTNL-LESLPAV--PV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC---CC--TTCCEEECCSSC-CSSCCCC--C----------CCEEEECCSS
T ss_pred cCcCCC---cCCCcCEEECCCC-CCCCcch---hh--CCCCEEECcCCC-CCchhhH--HH--hhhcccccceEEecCCC
Confidence 333443 4567777777665 3444543 11 667777776653 2322110 00 00000111255666553
Q ss_pred ccccccCCCCcccCCCCccEEeeccCC
Q 038945 290 PSLTSFCLGNYALEFPSLEHVVVRQCP 316 (363)
Q Consensus 290 ~~L~~~~~~~~~~~~~~L~~L~l~~c~ 316 (363)
.++.++.. ...+++|+.|++++++
T Consensus 218 -~l~~lp~~--l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 218 -RITHIPEN--ILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CCCCCCGG--GGGSCTTEEEECCSSS
T ss_pred -cceecCHH--HhcCCCCCEEEeeCCc
Confidence 44445443 4445566666665553
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=7.9e-09 Score=89.83 Aligned_cols=150 Identities=17% Similarity=0.091 Sum_probs=93.2
Q ss_pred cceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccccccc
Q 038945 51 IENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKE 130 (363)
Q Consensus 51 L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 130 (363)
-+.++.++.. ++.+|.+. .++|++|+++++ ++....|.. +..+++|++|+++++. +..++..
T Consensus 21 ~~~v~c~~~~-l~~ip~~~------~~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~i~~~-------- 82 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGI------PTNAQILYLHDN-QITKLEPGV-FDSLINLKELYLGSNQ-LGALPVG-------- 82 (229)
T ss_dssp TTEEECTTSC-CSSCCSCC------CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT--------
T ss_pred CCEeEccCCC-cCccCCCC------CCCCCEEEcCCC-ccCccCHHH-hhCccCCcEEECCCCC-CCCcChh--------
Confidence 4556666654 66655433 367788888776 455544433 6777788888887754 4444311
Q ss_pred ccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCc
Q 038945 131 HLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQL 210 (363)
Q Consensus 131 ~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l 210 (363)
....+++|+.|+++++ +++.+. ...+..+++|+.|+++++. +
T Consensus 83 -~~~~l~~L~~L~Ls~N-~l~~l~-----------------------------------~~~~~~l~~L~~L~Ls~N~-l 124 (229)
T 3e6j_A 83 -VFDSLTQLTVLDLGTN-QLTVLP-----------------------------------SAVFDRLVHLKELFMCCNK-L 124 (229)
T ss_dssp -TTTTCTTCCEEECCSS-CCCCCC-----------------------------------TTTTTTCTTCCEEECCSSC-C
T ss_pred -hcccCCCcCEEECCCC-cCCccC-----------------------------------hhHhCcchhhCeEeccCCc-c
Confidence 1235677777777765 343321 1123455778888887765 4
Q ss_pred ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 211 QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 211 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
..+|..+..+++|++|+++++ .++.++. ..+..+++|+.|++.+++
T Consensus 125 ~~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 125 TELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred cccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 566666777888888888775 5666554 335677888888887755
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=3e-09 Score=97.71 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccc-eecccccccccccCCC
Q 038945 220 LENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLE-YLGLDCLPSLTSFCLG 298 (363)
Q Consensus 220 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~~~~~ 298 (363)
+++|+.++++++ .++.++.. .+..+++|+.+++.+. ++.+ ...++..+++|+ .+.+.+ +++.+...
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~-aF~~~~~L~~l~l~~n--i~~I-------~~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDF-TFAQKKYLLKIKLPHN--LKTI-------GQRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTT-TTTTCTTCCEEECCTT--CCEE-------CTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCC-CcceecHh-hhhCCCCCCEEECCcc--ccee-------hHHHhhCChhccEEEEEcc--cceEEchh
Confidence 678888888764 36666543 3567888888888764 4443 222355678888 888876 67777665
Q ss_pred CcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeec
Q 038945 299 NYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKP 336 (363)
Q Consensus 299 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i 336 (363)
. +..|++|+.+++.+ ++++.++.... ++++|+.|..
T Consensus 292 a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 A-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred h-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 4 67788888888743 46777766444 7888887753
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.95 E-value=8.1e-09 Score=89.74 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=102.1
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
++|+.|+++++..-...+..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++. ++.+. ...+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTNQ-LTVLP-------SAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-------TTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCCc-CCccC-------hhHhC
Confidence 78999999998755444666788999999999987 4666654 335789999999999974 44332 12245
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
.+++|+.|+++++ .++.++.. +..+++|+.|+++++ +++.++.+ +..+++|+.|++++|
T Consensus 110 ~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TCTTCCEEECCSS-CCCSCCTT--GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cchhhCeEeccCC-cccccCcc--cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 6899999999986 67777766 788999999999776 78877754 558999999999999
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=1.1e-11 Score=122.43 Aligned_cols=121 Identities=18% Similarity=0.117 Sum_probs=90.6
Q ss_pred CCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccc
Q 038945 197 ANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCI 276 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 276 (363)
..|+.|+++++. ++.+|. +..+++|+.|+++++ .++.+|.. ++.+++|+.|+++++. ++.++ .+.
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N~-l~~lp---------~l~ 505 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDNA-LENVD---------GVA 505 (567)
T ss_dssp TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSSC-CCCCG---------GGT
T ss_pred cCceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchh--hhcCCCCCEEECCCCC-CCCCc---------ccC
Confidence 358999999884 566765 788999999999986 56677653 7789999999999875 33332 356
Q ss_pred cccccceeccccccccccc--CCCCcccCCCCccEEeeccCCCcccccCCCc----CCCCcceeec
Q 038945 277 VFRKLEYLGLDCLPSLTSF--CLGNYALEFPSLEHVVVRQCPTMKIFSQGVV----DAPKLNKVKP 336 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~~L~~L~i 336 (363)
.+++|+.|+++++ .++.+ +.. +..+++|+.|+++++ .++..|.... .+|+|+.|++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~--l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQP--LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGG--GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcEEECCCC-CCCCCCCcHH--HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 7889999999886 56666 444 777899999999776 5666665443 4788888853
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.93 E-value=1.6e-08 Score=87.27 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=36.3
Q ss_pred cccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCc
Q 038945 193 NKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 258 (363)
+..+++|+.|+++++......+..+..+++|++|+++++ .++.++. ..+..+++|+.|++++++
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecCcC
Confidence 344466666666666533333445556677777777664 3444422 224566777777776654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=5e-09 Score=93.10 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=108.3
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
+..+++|++|+++. . .+..++ .+..+++|++|+++++. ++.++. . ..+++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~----------n----~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l----~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 37 QKELSGVQNFNGDN----------S----NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-L----KDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTTCSEEECTT----------S----CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-G----TTCSSCCEEECCSS
T ss_pred hhhcCcCcEEECcC----------C----Ccccch-HHhhCCCCCEEECCCCc-cCCChh-h----ccCCCCCEEECCCC
Confidence 56678899998882 1 222333 46678999999999997 887654 3 58999999999998
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhc
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECN 167 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~ 167 (363)
++....+ +.. ++|++|++++|. +..++. ...+++|+.|+++++. ++++
T Consensus 96 -~l~~l~~---~~~-~~L~~L~L~~N~-l~~~~~-----------l~~l~~L~~L~Ls~N~-i~~~-------------- 143 (263)
T 1xeu_A 96 -RLKNLNG---IPS-ACLSRLFLDNNE-LRDTDS-----------LIHLKNLEILSIRNNK-LKSI-------------- 143 (263)
T ss_dssp -CCSCCTT---CCC-SSCCEEECCSSC-CSBSGG-----------GTTCTTCCEEECTTSC-CCBC--------------
T ss_pred -ccCCcCc---ccc-CcccEEEccCCc-cCCChh-----------hcCcccccEEECCCCc-CCCC--------------
Confidence 5665433 333 899999999874 555432 3468899999998763 4332
Q ss_pred cccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCc
Q 038945 168 FIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCH 232 (363)
Q Consensus 168 ~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 232 (363)
+.+..+++|+.|+++++. +..+ ..+..+++|+.|++++++
T Consensus 144 -----------------------~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 144 -----------------------VMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -----------------------GGGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred -----------------------hHHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence 235567999999999986 4444 566789999999999864
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.91 E-value=7.6e-09 Score=89.36 Aligned_cols=129 Identities=10% Similarity=0.175 Sum_probs=98.2
Q ss_pred CCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 197 ANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
+.|+.|+++++. +..++ ..+..+++|+.|+++++ .++.+.. ..+..+++|++|+++++. ++.+. ...+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNN-QISELAP-DAFQGLRSLNSLVLYGNK-ITELP-------KSLF 100 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSS-CCCEECT-TTTTTCSSCCEEECCSSC-CCCCC-------TTTT
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCC-cCCCcCH-HHhhCCcCCCEEECCCCc-CCccC-------HhHc
Confidence 689999999986 44444 46778999999999987 4555533 236789999999999975 33332 1224
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
..+++|++|+++++ .++.+.... +..+++|++|+++++ .++.++.+ +..+++|+.|++++|
T Consensus 101 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 EGLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 56899999999996 566665543 667899999999776 67777664 568999999999999
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.89 E-value=2.5e-09 Score=88.08 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=98.9
Q ss_pred CCCccEEEeccCcCc-ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945 196 FANLKSLEISECSQL-QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED 274 (363)
Q Consensus 196 l~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 274 (363)
+++|+.|++++|..- ..++..+..+++|+.|++++|. ++.+ ..+..+++|+.|++++|.....+. ..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--------~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLD--------ML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCC--------HH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHH--------HH
Confidence 378999999998743 2677777889999999999985 6655 336789999999999986322111 11
Q ss_pred cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC----CCcCCCCcceeecccC
Q 038945 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTEE 339 (363)
Q Consensus 275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~i~~~ 339 (363)
+..+++|++|+++++ .++.++.......+++|+.|++++| .++.++. .+..+++|+.|+++++
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 335899999999997 6776653222677999999999877 6666665 5668999999999998
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.87 E-value=2.1e-09 Score=86.73 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=96.1
Q ss_pred CCCccEEEeccCcCc-ccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945 196 FANLKSLEISECSQL-QKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED 274 (363)
Q Consensus 196 l~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 274 (363)
.++|+.|++++|..- ..++..+..+++|+.|++++| .++.+ ..+..+++|+.|++++|..-..++. .
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~--------~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEV--------L 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHH--------H
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHH--------H
Confidence 378999999999743 367777788999999999987 55555 3367889999999999863221211 1
Q ss_pred cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC----CCcCCCCcceeeccc
Q 038945 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTE 338 (363)
Q Consensus 275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~i~~ 338 (363)
+..+++|++|+++++ .++.++.......+++|++|++++| .++..+. .+..+++|+.|++++
T Consensus 84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 345899999999997 4666542112677999999999887 6776665 456899999999874
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.87 E-value=2.7e-08 Score=97.92 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=120.3
Q ss_pred CceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcc
Q 038945 13 KLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSS 92 (363)
Q Consensus 13 ~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~ 92 (363)
+|+.|+++. . .+..+|..+ +++|++|+++++. ++.+| ..+++|++|++++| +++.
T Consensus 60 ~L~~L~Ls~----------n----~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip-------~~l~~L~~L~Ls~N-~l~~ 114 (571)
T 3cvr_A 60 QFSELQLNR----------L----NLSSLPDNL--PPQITVLEITQNA-LISLP-------ELPASLEYLDACDN-RLST 114 (571)
T ss_dssp TCSEEECCS----------S----CCSCCCSCC--CTTCSEEECCSSC-CSCCC-------CCCTTCCEEECCSS-CCSC
T ss_pred CccEEEeCC----------C----CCCccCHhH--cCCCCEEECcCCC-Ccccc-------cccCCCCEEEccCC-CCCC
Confidence 788888881 2 233355544 3789999999987 87755 35799999999998 5666
Q ss_pred cCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccch
Q 038945 93 AIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIK 172 (363)
Q Consensus 93 ~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~ 172 (363)
+|. +.. +|++|+++++. +..++. .+++|+.|+++++. ++.++.
T Consensus 115 -ip~--l~~--~L~~L~Ls~N~-l~~lp~-------------~l~~L~~L~Ls~N~-l~~lp~----------------- 157 (571)
T 3cvr_A 115 -LPE--LPA--SLKHLDVDNNQ-LTMLPE-------------LPALLEYINADNNQ-LTMLPE----------------- 157 (571)
T ss_dssp -CCC--CCT--TCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSC-CSCCCC-----------------
T ss_pred -cch--hhc--CCCEEECCCCc-CCCCCC-------------cCccccEEeCCCCc-cCcCCC-----------------
Confidence 554 333 89999999864 554442 47889999998763 433311
Q ss_pred hhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhh----hccc
Q 038945 173 SNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSE----SLVN 248 (363)
Q Consensus 173 ~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~----~l~~ 248 (363)
.+++|+.|++++|. +..+|. +. ++|+.|+++++ .++.+|. +.. ..+.
T Consensus 158 ----------------------~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~ 208 (571)
T 3cvr_A 158 ----------------------LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEET 208 (571)
T ss_dssp ----------------------CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC--------C
T ss_pred ----------------------cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCC-CCCchhh--HHHhhhccccc
Confidence 23788999998885 455655 33 88999999886 5666664 222 1122
Q ss_pred cCeEeeccCcchhhhhccCccccccccccccccceeccccccc
Q 038945 249 LERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 291 (363)
Q Consensus 249 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 291 (363)
|+.|++++|. ++.++. .+..+++|+.|++++++-
T Consensus 209 L~~L~Ls~N~-l~~lp~--------~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 209 EIFFRCRENR-ITHIPE--------NILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CEEEECCSSC-CCCCCG--------GGGGSCTTEEEECCSSSC
T ss_pred ceEEecCCCc-ceecCH--------HHhcCCCCCEEEeeCCcC
Confidence 3888888874 343322 244588899999988743
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.83 E-value=5.9e-08 Score=83.73 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=30.8
Q ss_pred cccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 49 RDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 49 ~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
+.|+.|+++++. ++.++... + ..+++|++|+++++ .+....|.. +..+++|++|+++++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~-~--~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGA-F--SPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTS-S--TTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSS
T ss_pred cCCCEEECCCCc-CCCcCHhH-h--hCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCC
Confidence 456666666654 55444322 1 34566666666655 344433333 555666666666554
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.82 E-value=9e-09 Score=84.75 Aligned_cols=60 Identities=27% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCc--hhhhhhccccCeEeeccCc
Q 038945 197 ANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLT--LSTSESLVNLERMKMSDCK 258 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~ 258 (363)
++|+.|++++|. +..++ ..+..+++|++|+++++ .+..++. ...+..+++|+.|++++|.
T Consensus 95 ~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 444444444442 22222 33445566666666665 2333332 1234566677777766664
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.81 E-value=3.1e-08 Score=92.08 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=113.3
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|..+ .+.++.|+++++. ++.++... +. ..+++|++|+++++ ++....+.. +..+++|++|+++++. +
T Consensus 29 ~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~-l 100 (361)
T 2xot_A 29 QLPNVPQSL--PSYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNH-L 100 (361)
T ss_dssp CCSSCCSSC--CTTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-C
T ss_pred CcCccCccC--CCCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCc-C
Confidence 344456554 2568999999986 88766554 21 16899999999988 566645443 8889999999999864 6
Q ss_pred ceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccC
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVF 196 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l 196 (363)
..++.. ....+++|+.|+++++. +..+. ...+..+
T Consensus 101 ~~~~~~---------~~~~l~~L~~L~L~~N~-i~~~~-----------------------------------~~~~~~l 135 (361)
T 2xot_A 101 HTLDEF---------LFSDLQALEVLLLYNNH-IVVVD-----------------------------------RNAFEDM 135 (361)
T ss_dssp CEECTT---------TTTTCTTCCEEECCSSC-CCEEC-----------------------------------TTTTTTC
T ss_pred CcCCHH---------HhCCCcCCCEEECCCCc-ccEEC-----------------------------------HHHhCCc
Confidence 555421 13467889999998763 33221 2335667
Q ss_pred CCccEEEeccCcCcccccccc----cCCCCCCEEeeccCcCccccCchhhhhhccc--cCeEeeccCc
Q 038945 197 ANLKSLEISECSQLQKLVPAS----CYLENLATLEVSKCHGLINLLTLSTSESLVN--LERMKMSDCK 258 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c~ 258 (363)
++|+.|+++++. +..++... ..+++|+.|+++++ .++.++.. .+..++. ++.|++.+++
T Consensus 136 ~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 136 AQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HHHHSCHHHHTTEECCSSC
T ss_pred ccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-HhhhccHhhcceEEecCCC
Confidence 899999999885 55555443 46899999999885 56666532 3556666 4888888755
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.76 E-value=5.4e-08 Score=82.05 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=93.8
Q ss_pred cEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945 200 KSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR 279 (363)
Q Consensus 200 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 279 (363)
+.+++++.. ++.+|..+ ..+++.|+++++ .++.++..+++..+++|+.|+++++. ++.+ ....+..++
T Consensus 11 ~~l~~s~~~-l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-------~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGI-------EPNAFEGAS 78 (192)
T ss_dssp TEEECTTSC-CSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCB-------CTTTTTTCT
T ss_pred CEEEcCCCC-cCcCccCC--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCc-------CHhHcCCcc
Confidence 677777764 56666654 449999999986 56666654456789999999999875 3322 123356789
Q ss_pred ccceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945 280 KLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 280 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~ 339 (363)
+|++|+++++ .++.++... +..+++|++|+++++ +++.+ |..+..+++|+.|++++|
T Consensus 79 ~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 79 HIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999999986 567666543 567899999999777 55544 667779999999999999
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.75 E-value=4.1e-08 Score=91.29 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=61.5
Q ss_pred ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945 217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC 296 (363)
Q Consensus 217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 296 (363)
+..+++|++|+++++ .++.++. ..+..+++|+.|+++++.. ..+ ....+..+++|+.|+++++ .++.++
T Consensus 84 ~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~i-~~~-------~~~~~~~l~~L~~L~L~~N-~l~~l~ 152 (361)
T 2xot_A 84 FVPVPNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNNHI-VVV-------DRNAFEDMAQLQKLYLSQN-QISRFP 152 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCC-CEE-------CTTTTTTCTTCCEEECCSS-CCCSCC
T ss_pred ccCCCCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCCcc-cEE-------CHHHhCCcccCCEEECCCC-cCCeeC
Confidence 445555666666554 3444432 1244566666666666542 211 1112345667777777664 455555
Q ss_pred CCCc--ccCCCCccEEeeccCCCcccccC-CCcCCCC--cceeecccC
Q 038945 297 LGNY--ALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPK--LNKVKPTEE 339 (363)
Q Consensus 297 ~~~~--~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~--L~~L~i~~~ 339 (363)
.... ...+++|+.|+++++ .++.++. .+..++. ++.|++++|
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp GGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred HHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCC
Confidence 4310 035788888888665 6666664 3346665 488999999
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.75 E-value=4.9e-08 Score=84.20 Aligned_cols=129 Identities=10% Similarity=0.111 Sum_probs=97.7
Q ss_pred CCccEEEeccCcCcccc-c-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccc
Q 038945 197 ANLKSLEISECSQLQKL-V-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAED 274 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l-~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 274 (363)
+.++.|+++++. +..+ + ..+..+++|++|+++++ .++.++. ..+..+++|+.|+++++.. ..+ ....
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~-------~~~~ 100 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNRL-ENV-------QHKM 100 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCC-CCC-------CGGG
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCcc-Ccc-------CHhH
Confidence 567899999986 4444 2 23678999999999986 4666654 2367899999999999753 322 1223
Q ss_pred cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCCCcCCCCcceeecccC
Q 038945 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~~ 339 (363)
+..+++|++|+++++ .++.+.... +..+++|+.|+++++ .++.+ |..+..+++|+.|++++|
T Consensus 101 ~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 101 FKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp GTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred hcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 567899999999996 566664443 667899999999776 66666 567779999999999999
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=1.5e-08 Score=81.65 Aligned_cols=57 Identities=26% Similarity=0.311 Sum_probs=29.2
Q ss_pred CCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCc--hhhhhhccccCeEeec
Q 038945 197 ANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLT--LSTSESLVNLERMKMS 255 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~ 255 (363)
++|+.|++++|. +..++ ..+..+++|++|+++++ .++..+. ...+..+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 444444444443 22221 33455666666666665 3444443 1235667777777665
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.68 E-value=1.6e-07 Score=79.99 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=95.6
Q ss_pred CCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccc
Q 038945 197 ANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDC 275 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 275 (363)
++|+.|+++++. ++.++. .+..+++|++|+++++ .++.++. ..+..+++|++|+++++. +..+. ...+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLP-------NGVF 96 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-------TTTT
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc-CCccC-------HhHh
Confidence 689999999985 444443 4568899999999986 5666653 235678999999999875 33221 1224
Q ss_pred ccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 276 IVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 276 ~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
..+++|++|+++++ .++.++... +..+++|++|+++++ .++.++.. +..+++|+.|++++|
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCccCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 56889999999986 566665542 466899999999776 67777665 568999999999998
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.66 E-value=1.4e-07 Score=79.68 Aligned_cols=123 Identities=12% Similarity=0.111 Sum_probs=92.7
Q ss_pred cEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccc
Q 038945 200 KSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFR 279 (363)
Q Consensus 200 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 279 (363)
+.+++++.. ++.+|..+ .++|+.|+++++ .++.+| ..+..+++|+.|+++++. ++.+ ....+..++
T Consensus 13 ~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i-------~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI--PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTL-------SNQSFSNMT 78 (193)
T ss_dssp TEEECTTSC-CSSCCSCC--CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCC-------CTTTTTTCT
T ss_pred CEEEcCCCC-CCcCCCCC--CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEe-------CHhHccCCC
Confidence 456666553 56666543 579999999986 566776 347889999999999875 3332 222356789
Q ss_pred ccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 280 KLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 280 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
+|++|+++++ .++.++... +..+++|+.|+++++ .++.++.+ +..+++|+.|++++|
T Consensus 79 ~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 79 QLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 9999999986 577776653 667899999999776 78888775 558999999999999
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=2.6e-08 Score=82.74 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=97.6
Q ss_pred ccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945 192 SNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE 271 (363)
Q Consensus 192 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (363)
....+.+|+.|+++++. ++.++......++|+.|+++++ .++.++ .+..+++|+.|+++++. +..++.
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N~-l~~~~~------ 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNNR-ICRIGE------ 81 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSSC-CCEECS------
T ss_pred hcCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCC-CCCccc---ccccCCCCCEEECCCCc-ccccCc------
Confidence 34556899999999985 5555443334459999999997 465552 25788999999999985 333311
Q ss_pred ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC----CcCCCCcceeecccC
Q 038945 272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG----VVDAPKLNKVKPTEE 339 (363)
Q Consensus 272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~~L~~L~i~~~ 339 (363)
..+..+++|++|+++++ .++.++.......+++|++|+++++ .++.+|.. +..+++|+.|+++++
T Consensus 82 -~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 82 -GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 11356899999999986 5666665222667999999999877 56667664 669999999999988
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=9.6e-08 Score=79.23 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=45.2
Q ss_pred cccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceeccccccc
Q 038945 47 GFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELN 126 (363)
Q Consensus 47 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 126 (363)
.+++|++|+++++. ++.++... ...++|++|++++| .+... + .++.+++|++|+++++. +..++...
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~~~----~~~~~L~~L~Ls~N-~l~~~-~--~l~~l~~L~~L~Ls~N~-l~~~~~~~--- 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIENLG----ATLDQFDAIDFSDN-EIRKL-D--GFPLLRRLKTLLVNNNR-ICRIGEGL--- 83 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCCGG----GGTTCCSEEECCSS-CCCEE-C--CCCCCSSCCEEECCSSC-CCEECSCH---
T ss_pred CcCCceEEEeeCCC-CchhHHhh----hcCCCCCEEECCCC-CCCcc-c--ccccCCCCCEEECCCCc-ccccCcch---
Confidence 45667777777765 66543222 22347777777776 45543 2 16667777777777653 44443100
Q ss_pred ccccccCCCCCccceeecccc
Q 038945 127 ADKEHLCPLFPKLFSLRLIDL 147 (363)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~ 147 (363)
...+++|+.|+++++
T Consensus 84 ------~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 84 ------DQALPDLTELILTNN 98 (176)
T ss_dssp ------HHHCTTCCEEECCSC
T ss_pred ------hhcCCCCCEEECCCC
Confidence 113556666666554
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=5e-06 Score=78.27 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=30.1
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCccee
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEV 119 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~ 119 (363)
+|+.+.+.+. ++.+.... . .. .+|+.+.+.+ .+.. ++...+..|++|+.+++.++ ++..+
T Consensus 136 ~L~~i~l~~~--i~~I~~~a-F--~~-~~L~~i~lp~--~l~~-I~~~aF~~c~~L~~l~l~~n-~l~~I 195 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMA-F--FN-STVQEIVFPS--TLEQ-LKEDIFYYCYNLKKADLSKT-KITKL 195 (401)
T ss_dssp CCSEEECCTT--CCEECTTT-T--TT-CCCCEEECCT--TCCE-ECSSTTTTCTTCCEEECTTS-CCSEE
T ss_pred CccEEEeCCC--ccEECHHh-c--CC-CCceEEEeCC--CccE-ehHHHhhCcccCCeeecCCC-cceEe
Confidence 4666666542 44433322 1 11 3566666654 3443 33333666777777777543 34444
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=7.8e-07 Score=81.42 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=75.5
Q ss_pred CCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccC-eEeeccCcchhhhhccCcccccc
Q 038945 196 FANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLE-RMKMSDCKMMEEIIQSQVGEEAE 273 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~ 273 (363)
+++|++|+++++. ++.++. .+..+.+|+.+++.+. ++.++.. .+..+++|+ .+++.+ .++.+ ...
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I-------~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAI-------EFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEE-------CTT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEE-------chh
Confidence 5899999999865 555554 4678999999999873 7777653 467899999 999987 44444 223
Q ss_pred ccccccccceecccccccccccCCCCcccCCCCccEEe
Q 038945 274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVV 311 (363)
Q Consensus 274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~ 311 (363)
++..+++|+.+++.+ ..++.+.... +..+++|+.+.
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLGDEL-FGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEECTTT-TCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCC-CccCccchhh-hcCCcchhhhc
Confidence 466799999999876 4777777764 66788888875
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.53 E-value=8.3e-07 Score=74.67 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=65.6
Q ss_pred ceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccc
Q 038945 52 ENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEH 131 (363)
Q Consensus 52 ~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 131 (363)
++++++++. ++++|... ..+|++|+++++ ++....+...++.+++|++|+++++. +..+.. .
T Consensus 11 ~~l~~s~~~-l~~ip~~~------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~ 72 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDI------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP---------N 72 (192)
T ss_dssp TEEECTTSC-CSSCCSCC------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT---------T
T ss_pred CEEEcCCCC-cCcCccCC------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH---------h
Confidence 556666654 55544322 236777777766 45544443346667777777776653 333211 0
Q ss_pred cCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcCcc
Q 038945 132 LCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQLQ 211 (363)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~l~ 211 (363)
....+++|+.|++++.. ++.+. ...+..+++|+.|+++++..-.
T Consensus 73 ~~~~l~~L~~L~Ls~N~-l~~~~-----------------------------------~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 73 AFEGASHIQELQLGENK-IKEIS-----------------------------------NKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp TTTTCTTCCEEECCSCC-CCEEC-----------------------------------SSSSTTCTTCCEEECCSSCCCE
T ss_pred HcCCcccCCEEECCCCc-CCccC-----------------------------------HHHhcCCCCCCEEECCCCcCCe
Confidence 12245566666665432 22211 1123344666666666665333
Q ss_pred cccccccCCCCCCEEeeccCc
Q 038945 212 KLVPASCYLENLATLEVSKCH 232 (363)
Q Consensus 212 ~l~~~~~~~~~L~~L~l~~c~ 232 (363)
..+..+..+++|++|++++++
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 117 VMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECTTSSTTCTTCCEEECTTCC
T ss_pred eCHHHhhcCCCCCEEEeCCCC
Confidence 334455556666666666543
No 130
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=2.4e-08 Score=82.43 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccc----ccccceecccccccccccCC
Q 038945 222 NLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIV----FRKLEYLGLDCLPSLTSFCL 297 (363)
Q Consensus 222 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~L~~~~~ 297 (363)
+|++|++++|. +++..... +..+++|+.|++++|..+++.-. ..+.. .++|++|++++|+++++...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 56777777775 55544322 35677777777777776654311 11222 34677777777777766544
Q ss_pred CCcccCCCCccEEeeccCCCcccc
Q 038945 298 GNYALEFPSLEHVVVRQCPTMKIF 321 (363)
Q Consensus 298 ~~~~~~~~~L~~L~l~~c~~l~~l 321 (363)
.. ...+++|++|++++|+.++..
T Consensus 133 ~~-L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IA-LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HH-GGGCTTCCEEEEESCTTCCCH
T ss_pred HH-HhcCCCCCEEECCCCCCCCch
Confidence 33 345788888888888877753
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=6.6e-08 Score=79.79 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=70.1
Q ss_pred CCccEEEeccCcCcccc-cccccCCCCCCEEeeccCcCccccCchhhhh---hccccCeEeeccCcchhhhhccCccccc
Q 038945 197 ANLKSLEISECSQLQKL-VPASCYLENLATLEVSKCHGLINLLTLSTSE---SLVNLERMKMSDCKMMEEIIQSQVGEEA 272 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 272 (363)
..|++|++++|. +++. ...+..+++|++|++++|..+++.....+.. ..++|+.|++++|..+++. ..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-------Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-------GI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-------HH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-------HH
Confidence 479999999998 4433 3456789999999999999998865443332 1358999999999988764 12
Q ss_pred cccccccccceeccccccccccc
Q 038945 273 EDCIVFRKLEYLGLDCLPSLTSF 295 (363)
Q Consensus 273 ~~~~~l~~L~~L~l~~c~~L~~~ 295 (363)
..+..+++|++|++++|+.+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHhcCCCCCEEECCCCCCCCch
Confidence 23556899999999999988864
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.47 E-value=7.6e-07 Score=75.04 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCC
Q 038945 11 TPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNM 90 (363)
Q Consensus 11 ~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l 90 (363)
.++|+.|.++. +.+..+|..+..+++|++|+++++. ++.++... + ..+++|++|+++++ ++
T Consensus 30 ~~~l~~L~L~~--------------n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N-~l 90 (193)
T 2wfh_A 30 PRDVTELYLDG--------------NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS-F--SNMTQLLTLILSYN-RL 90 (193)
T ss_dssp CTTCCEEECCS--------------SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSS-CC
T ss_pred CCCCCEEECCC--------------CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH-c--cCCCCCCEEECCCC-cc
Confidence 46788888871 2334566677788999999999987 77755432 1 47899999999987 56
Q ss_pred cccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 91 SSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 91 ~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
....+. .+..+++|+.|+++++. +..++.. ....+++|+.|++++.+
T Consensus 91 ~~i~~~-~f~~l~~L~~L~L~~N~-l~~~~~~---------~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPR-TFDGLKSLRLLSLHGND-ISVVPEG---------AFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTT-TTTTCTTCCEEECCSSC-CCBCCTT---------TTTTCTTCCEEECCSSC
T ss_pred CEeCHH-HhCCCCCCCEEECCCCC-CCeeChh---------hhhcCccccEEEeCCCC
Confidence 664444 38889999999998864 5554421 12357888999988764
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.43 E-value=2.2e-06 Score=70.85 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=89.3
Q ss_pred ccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccc
Q 038945 199 LKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVF 278 (363)
Q Consensus 199 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l 278 (363)
.+.+++++.. +..+|.. .+++|+.|+++++ .++.++. ..+..+++|++|+++++. +..+. ...+..+
T Consensus 9 ~~~l~~~~~~-l~~~p~~--~~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l 75 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTG--IPSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLP-------DGVFDKL 75 (177)
T ss_dssp TTEEECCSSC-CSSCCTT--CCTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCC-------TTTTTTC
T ss_pred CCEEEecCCC-CccCCCC--CCCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCCc-ceEeC-------hhHccCC
Confidence 4566666553 5555543 3578999999886 4666553 235678999999999874 33321 1224568
Q ss_pred cccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945 279 RKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 279 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~ 339 (363)
++|++|+++++ .++.++... +..+++|++|+++++ .++.++.+. ..+++|+.|++++|
T Consensus 76 ~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 76 TKLTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEEECCCC-CccccCHHH-hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 89999999986 566666542 456889999999776 777888765 57999999999999
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.37 E-value=6.6e-07 Score=90.83 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=67.6
Q ss_pred cccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceeccccccccc
Q 038945 214 VPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLT 293 (363)
Q Consensus 214 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 293 (363)
+..+..+++|+.|+++++. +..++.. +..+++|+.|+++++. +..++ ..+..+++|++|+|+++ .++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~--~~~l~~L~~L~Ls~N~-l~~lp--------~~~~~l~~L~~L~Ls~N-~l~ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISAN--IFKYDFLTRLYLNGNS-LTELP--------AEIKNLSNLRVLDLSHN-RLT 283 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGG--GGGCCSCSCCBCTTSC-CSCCC--------GGGGGGTTCCEEECTTS-CCS
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChh--hcCCCCCCEEEeeCCc-CcccC--------hhhhCCCCCCEEeCcCC-cCC
Confidence 3445566777777777653 4455432 3467777777777764 22222 12456777777777775 455
Q ss_pred ccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 294 SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 294 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
.++.. +..+++|++|++++| .++.+|.++..+++|+.|++++|
T Consensus 284 ~lp~~--~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 284 SLPAE--LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCSS--GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred ccChh--hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 66554 666777777777665 56677777777777777777777
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.37 E-value=4.2e-06 Score=69.12 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=29.6
Q ss_pred cceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 51 IENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 51 L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
.+.++++++. ++.+|.. ..++|++|+++++ ++.. .+...++.+++|++|+++++
T Consensus 9 ~~~l~~~~~~-l~~~p~~------~~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTG------IPSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSC-CSSCCTT------CCTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSS
T ss_pred CCEEEecCCC-CccCCCC------CCCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCC
Confidence 3455555554 5553322 2356777777665 3443 33333566667777777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.37 E-value=1.5e-08 Score=85.81 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCccEEEeccCcCccccc--ccccCCCCCCEEeeccCcCccccCc--------hhhhhhccccCeEe
Q 038945 196 FANLKSLEISECSQLQKLV--PASCYLENLATLEVSKCHGLINLLT--------LSTSESLVNLERMK 253 (363)
Q Consensus 196 l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--------~~~~~~l~~L~~L~ 253 (363)
+++|+.|+++++. +..++ ..+..+++|++|++++++--...+. ...+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3566677776654 23222 2445677778888877643222111 12356788888887
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=3.3e-05 Score=72.65 Aligned_cols=216 Identities=13% Similarity=0.155 Sum_probs=138.0
Q ss_pred ccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccc
Q 038945 50 DIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADK 129 (363)
Q Consensus 50 ~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 129 (363)
.|+++.+.+ +++.+.... ...|.+|+.+++.++ ++.. ++...+. +.+|+.+.+.. .+..+...
T Consensus 158 ~L~~i~lp~--~l~~I~~~a---F~~c~~L~~l~l~~n-~l~~-I~~~aF~-~~~L~~l~lp~--~l~~I~~~------- 220 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDI---FYYCYNLKKADLSKT-KITK-LPASTFV-YAGIEEVLLPV--TLKEIGSQ------- 220 (401)
T ss_dssp CCCEEECCT--TCCEECSST---TTTCTTCCEEECTTS-CCSE-ECTTTTT-TCCCSEEECCT--TCCEECTT-------
T ss_pred CceEEEeCC--CccEehHHH---hhCcccCCeeecCCC-cceE-echhhEe-ecccCEEEeCC--chheehhh-------
Confidence 588998886 466655433 247899999999875 4554 4445466 58999999974 35555421
Q ss_pred cccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcccccccCCCccEEEeccCcC
Q 038945 130 EHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENAESNKVFANLKSLEISECSQ 209 (363)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~~~l~~l~~L~~L~l~~c~~ 209 (363)
...++++|+.+.+.+ +++.+... ++.+ .+|+.+.+.+ .
T Consensus 221 --aF~~~~~L~~l~l~~--~l~~I~~~-----------------------------------aF~~-~~L~~i~lp~--~ 258 (401)
T 4fdw_A 221 --AFLKTSQLKTIEIPE--NVSTIGQE-----------------------------------AFRE-SGITTVKLPN--G 258 (401)
T ss_dssp --TTTTCTTCCCEECCT--TCCEECTT-----------------------------------TTTT-CCCSEEEEET--T
T ss_pred --HhhCCCCCCEEecCC--CccCcccc-----------------------------------cccc-CCccEEEeCC--C
Confidence 134677888888864 34433211 1223 5788888854 3
Q ss_pred ccccc-ccccCCCCCCEEeeccCcC----ccccCchhhhhhccccCeEeeccCcchhhhhccCcccccccccccccccee
Q 038945 210 LQKLV-PASCYLENLATLEVSKCHG----LINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYL 284 (363)
Q Consensus 210 l~~l~-~~~~~~~~L~~L~l~~c~~----l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 284 (363)
+..++ ..+..|++|+.+.+.+... ...++. ..+..+++|+.+.+.+ .++.+ ...++..+++|+.+
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~~--~i~~I-------~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIPE--SIRIL-------GQGLLGGNRKVTQL 328 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCCT--TCCEE-------CTTTTTTCCSCCEE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeCC--ceEEE-------hhhhhcCCCCccEE
Confidence 44453 3456788999999876421 112333 3366888999998874 24433 12235568899999
Q ss_pred cccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-CCC-CcceeecccC
Q 038945 285 GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAP-KLNKVKPTEE 339 (363)
Q Consensus 285 ~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~-~L~~L~i~~~ 339 (363)
.+.. +++.+.... +..| +|+.+.+.+. .+..++.+.. .++ ++..|.+..+
T Consensus 329 ~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 329 TIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 9854 477776664 6667 9999999766 4444544333 554 7888888766
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=9.5e-07 Score=87.05 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=64.4
Q ss_pred hhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcce
Q 038945 39 QKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLEE 118 (363)
Q Consensus 39 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~ 118 (363)
..+|. +..+++|++|+++++. ++.+|... +.+++|+.|+++++ +++. +| . ++.+++|+.|+++++. +..
T Consensus 454 ~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~Ls~N-~l~~-lp-~-l~~l~~L~~L~Ls~N~-l~~ 522 (567)
T 1dce_A 454 TVLCH-LEQLLLVTHLDLSHNR-LRALPPAL----AALRCLEVLQASDN-ALEN-VD-G-VANLPRLQELLLCNNR-LQQ 522 (567)
T ss_dssp SSCCC-GGGGTTCCEEECCSSC-CCCCCGGG----GGCTTCCEEECCSS-CCCC-CG-G-GTTCSSCCEEECCSSC-CCS
T ss_pred CCCcC-ccccccCcEeecCccc-ccccchhh----hcCCCCCEEECCCC-CCCC-Cc-c-cCCCCCCcEEECCCCC-CCC
Confidence 34554 6677888888888886 77777655 57888888888887 5665 45 3 7888888888888764 444
Q ss_pred ecccccccccccccCCCCCccceeecccccccccc
Q 038945 119 VLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRF 153 (363)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 153 (363)
+... .....+++|+.|++++++ +..+
T Consensus 523 ~~~p--------~~l~~l~~L~~L~L~~N~-l~~~ 548 (567)
T 1dce_A 523 SAAI--------QPLVSCPRLVLLNLQGNS-LCQE 548 (567)
T ss_dssp SSTT--------GGGGGCTTCCEEECTTSG-GGGS
T ss_pred CCCc--------HHHhcCCCCCEEEecCCc-CCCC
Confidence 4100 012357788888888764 4443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.26 E-value=3.4e-08 Score=83.66 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=93.0
Q ss_pred ccccCCCccEEEeccCcCcccccccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945 192 SNKVFANLKSLEISECSQLQKLVPASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE 271 (363)
Q Consensus 192 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (363)
.+..+++|+.|+++++. +..++ .+..+++|+.|+++++ .++.++. ....+++|+.|++++|. +..+.
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~-l~~l~------- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-IASLS------- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE-CCCHH-------
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc-CCcCC-------
Confidence 45567999999999885 55565 7778899999999987 5666664 36678999999999974 44332
Q ss_pred ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccc-cCC----------CcCCCCcceee
Q 038945 272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF-SQG----------VVDAPKLNKVK 335 (363)
Q Consensus 272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~----------~~~~~~L~~L~ 335 (363)
.+..+++|+.|+++++ .++.++.......+++|++|++++|+ +... |.. +..+++|+.|+
T Consensus 110 --~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 --GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp --HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred --ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 2456899999999986 45554431125678999999998874 4333 222 56899999987
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.19 E-value=1.8e-06 Score=87.55 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=69.9
Q ss_pred cccCCCceeEEEeeecccceeeeccCCCchhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCC
Q 038945 8 ILSTPKLHKVQVTVKEEGELYHREGNLNSTIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDC 87 (363)
Q Consensus 8 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c 87 (363)
+..+++|+.|+++ ...+..+|..+..+++|++|+|+++. ++.+|... ..+++|++|++++|
T Consensus 220 ~~~l~~L~~L~Ls--------------~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 220 KYDDQLWHALDLS--------------NLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEI----KNLSNLRVLDLSHN 280 (727)
T ss_dssp --CCCCCCEEECT--------------TSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGG----GGGTTCCEEECTTS
T ss_pred hccCCCCcEEECC--------------CCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhh----hCCCCCCEEeCcCC
Confidence 4455666666666 12233456566677888888888876 77766555 57788888888877
Q ss_pred CCCcccCchhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 88 KNMSSAIPANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 88 ~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
++.. +|.. ++.+++|++|++++| .+..++.. ...+++|+.|+|+++.
T Consensus 281 -~l~~-lp~~-~~~l~~L~~L~L~~N-~l~~lp~~----------~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 281 -RLTS-LPAE-LGSCFQLKYFYFFDN-MVTTLPWE----------FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -CCSS-CCSS-GGGGTTCSEEECCSS-CCCCCCSS----------TTSCTTCCCEECTTSC
T ss_pred -cCCc-cChh-hcCCCCCCEEECCCC-CCCccChh----------hhcCCCccEEeCCCCc
Confidence 4553 4555 677888888888776 35554421 2357788888887663
No 141
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=3.6e-06 Score=78.09 Aligned_cols=180 Identities=21% Similarity=0.193 Sum_probs=100.7
Q ss_pred hhhhhhhccccccccceEecccCcCcc---cccccC-cC--CCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEE
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLK---EIWHNQ-AL--PVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEV 110 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~---~~~~~~-~l--~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l 110 (363)
.+..+...+..+++|+.|.+.+.. .. -.|... .+ ....+|+|++|+++++.++. .+. +. +++|++|++
T Consensus 127 ~~~~L~~s~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~--~~-~~~L~~L~L 200 (362)
T 2ra8_A 127 IADGIVENKEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK--KP-RPNLKSLEI 200 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS--CB-CTTCSEEEE
T ss_pred HHHHHHHhhhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc--cc-CCCCcEEEE
Confidence 345566666678899999886542 11 111110 01 01357999999999875443 232 33 789999999
Q ss_pred ccCCCcceecccccccccccccCCCCCccceeecccccccccccCcccchhhhhhhccccchhhHHHHHHhhhhhhhhcc
Q 038945 111 RNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLPKLKRFCNFTGNIIELLECNFIRIKSNLMTRLFALQHLLKENA 190 (363)
Q Consensus 111 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~L~~l~~~~~~l~~~L~l~~~~~~~l~~~~~ 190 (363)
..|. +..-. ..... ...+|+|+.|.|....+... .. ..+..+. . .
T Consensus 201 ~~~~-l~~~~-l~~l~------~~~lp~L~~L~L~~~~~~~~---~~-~~~~~l~------------------~-----~ 245 (362)
T 2ra8_A 201 ISGG-LPDSV-VEDIL------GSDLPNLEKLVLYVGVEDYG---FD-GDMNVFR------------------P-----L 245 (362)
T ss_dssp ECSB-CCHHH-HHHHH------HSBCTTCCEEEEECBCGGGT---CC-SCGGGTG------------------G-----G
T ss_pred ecCC-CChHH-HHHHH------HccCCCCcEEEEeccccccc---cc-hhHHHHH------------------H-----H
Confidence 8664 32211 01000 12588999998853211100 00 0000000 0 0
Q ss_pred cccccCCCccEEEeccCcCcccccc---cccCCCCCCEEeeccCcCccccCchhh---hhhccccCeEeeccCc
Q 038945 191 ESNKVFANLKSLEISECSQLQKLVP---ASCYLENLATLEVSKCHGLINLLTLST---SESLVNLERMKMSDCK 258 (363)
Q Consensus 191 ~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~c~ 258 (363)
.....+++|+.|++.+|........ ....+++|++|+++.+ .+++.....+ +..+++|+.|++++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0113468999999998875432211 1235889999999764 5665322111 3568999999999885
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=1.4e-05 Score=74.07 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=44.5
Q ss_pred hccccCeEeeccCcchhhhhccCccccccccccccccceeccccccccccc-----CCCCcccCCCCccEEeeccCCCcc
Q 038945 245 SLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF-----CLGNYALEFPSLEHVVVRQCPTMK 319 (363)
Q Consensus 245 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~~~~~~~~~L~~L~l~~c~~l~ 319 (363)
.+|+|+.|.+.+|......... ......+|+|++|+++.+ .+.+. ..+ ...+++|++|++++| .+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~-----la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~--L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEM-----FLESDILPQLETMDISAG-VLTDEGARLLLDH--VDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHH-----HHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT--HHHHTTCSEEECCSB-BCC
T ss_pred CCCCcCEEeCCCCCCchHHHHH-----HHhCccCCCCCEEECCCC-CCChHHHHHHHhh--cccCCcceEEECCCC-cCC
Confidence 4677888888776543221110 000124678888888654 45442 221 245678888888766 344
Q ss_pred cccCCCcCCCC--cceeecccC
Q 038945 320 IFSQGVVDAPK--LNKVKPTEE 339 (363)
Q Consensus 320 ~l~~~~~~~~~--L~~L~i~~~ 339 (363)
.. +...+.. ..+++++++
T Consensus 321 d~--~~~~l~~alg~~~~~~~~ 340 (362)
T 2ra8_A 321 DE--MKKELQKSLPMKIDVSDS 340 (362)
T ss_dssp HH--HHHHHHHHCCSEEECCSB
T ss_pred HH--HHHHHHHHcCCEEEecCC
Confidence 22 1111211 355777777
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=9.8e-06 Score=74.48 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=28.2
Q ss_pred ccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 278 FRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 278 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
+++|+.|+|+++ .++.++... +..+++|++|+++++ +++.+|.+.....+|+.|++.+|
T Consensus 55 l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 55 LGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCC
Confidence 444444444443 344333321 344555555555433 45555544443333666666666
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.03 E-value=1.2e-05 Score=66.43 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=68.3
Q ss_pred hhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCcc
Q 038945 38 IQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSLE 117 (363)
Q Consensus 38 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l~ 117 (363)
+..+|..+. ++|++|+++++. ++.++... ...+++|++|+++++ ++.. .|...+..+++|++|+++++ .+.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~-i~~~~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGV---FDHLVNLQQLYFNSN-KLTA-IPTGVFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCccCCCcC--CCCcEEEeCCCC-ccccCHHH---hcCCcCCCEEECCCC-CCCc-cChhHhCCcchhhEEECCCC-ccc
Confidence 445665553 789999999987 87764332 157999999999998 6776 55555788999999999986 465
Q ss_pred eecccccccccccccCCCCCccceeeccccc
Q 038945 118 EVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
.++.. ....+++|+.|++++.+
T Consensus 95 ~l~~~---------~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 95 SIPRG---------AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCTT---------TTTTCTTCSEEECCSSC
T ss_pred eeCHH---------HhccccCCCEEEeCCCC
Confidence 55421 13468899999998875
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=4.6e-07 Score=84.53 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=17.9
Q ss_pred CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
.+|++|++++| .+.+.....+...+++|++|++++|
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC
Confidence 45666666655 3333223333344455666666554
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=0.00023 Score=66.57 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=49.1
Q ss_pred hhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccC
Q 038945 244 ESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 323 (363)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 323 (363)
..+.+|+.+.+.+. ++.+ ...++..+++|+.+++.+ +++.+.... +..|.+|+.+.+.. .++.++.
T Consensus 294 ~~~~~L~~i~l~~~--i~~I-------~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~ 359 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS--VKFI-------GEEAFESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPL--SLRKIGA 359 (394)
T ss_dssp TTCTTCCEEEECTT--CCEE-------CTTTTTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECT
T ss_pred cccccccccccccc--ccee-------chhhhcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECc--cccEehH
Confidence 34566666665432 2222 112245577788887753 466665553 56678888887743 3666655
Q ss_pred CCc-CCCCcceeecccC
Q 038945 324 GVV-DAPKLNKVKPTEE 339 (363)
Q Consensus 324 ~~~-~~~~L~~L~i~~~ 339 (363)
... .+++|+++++..+
T Consensus 360 ~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTBTTCTTCCEEEEEGG
T ss_pred HHhhCCCCCCEEEECCC
Confidence 444 7788888887655
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.98 E-value=1.7e-05 Score=65.20 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=68.4
Q ss_pred hhhhhhhccccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccCCCc
Q 038945 37 TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNCDSL 116 (363)
Q Consensus 37 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~~~l 116 (363)
.+..+|..+ .+.|++|+++++. ++.++... + ..+++|++|+++++ ++.. .|...+..+++|++|+++++ .+
T Consensus 20 ~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~-~--~~l~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N-~l 90 (170)
T 3g39_A 20 SLASVPTGI--PTTTQVLYLYDNQ-ITKLEPGV-F--DRLTQLTRLDLDNN-QLTV-LPAGVFDKLTQLTQLSLNDN-QL 90 (170)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CC
T ss_pred CcCccCccC--CCCCcEEEcCCCc-CCccChhh-h--cCcccCCEEECCCC-CcCc-cChhhccCCCCCCEEECCCC-cc
Confidence 344566555 3789999999987 88764332 1 57899999999998 5665 45555788999999999986 46
Q ss_pred ceecccccccccccccCCCCCccceeeccccc
Q 038945 117 EEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
..++.. ....+++|+.|++++.+
T Consensus 91 ~~~~~~---------~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 91 KSIPRG---------AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred CEeCHH---------HhcCCCCCCEEEeCCCC
Confidence 555421 13468899999998764
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.97 E-value=4e-05 Score=63.17 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=31.4
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
.+++|++|+++++ .++.++.+. +..+++|++|+++++ +++.++.+ +..+++|+.|++++|
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGV-FDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCcCCCEEECCCC-CCCccChhH-hCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 3445555555543 344444331 234566666666443 55555544 445666666666666
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.91 E-value=6e-05 Score=61.84 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=34.1
Q ss_pred cccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCC-CcCCCCcceeecccC
Q 038945 277 VFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 339 (363)
Q Consensus 277 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~~ 339 (363)
.+++|++|+++++ .++.++.+. +..+++|++|+++++ +++.++.+ +..+++|+.|++++|
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLPAGV-FDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccCCEEECCCC-CcCccChhh-ccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 4555555555553 344444431 345666666766544 55555554 446677777777776
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.68 E-value=9.6e-05 Score=67.75 Aligned_cols=63 Identities=25% Similarity=0.145 Sum_probs=29.6
Q ss_pred cccCCCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccC
Q 038945 193 NKVFANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDC 257 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 257 (363)
+..+++|+.|+++++..+..++ ..+..+++|+.|+++++ .++.++.. .+..+++|+.|+++++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC
Confidence 4444555555555433344333 23445555555555553 34443321 2344555555555553
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.55 E-value=0.00062 Score=63.58 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=43.2
Q ss_pred cccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeecccC
Q 038945 275 CIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEE 339 (363)
Q Consensus 275 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~ 339 (363)
+..+++|+.+.+.+ +++.+.... +..|.+|+.+.+.+ .++.++.... .+++|+.+++..+
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccc--ccceechhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence 34567788887753 466666654 66789999999853 4777765444 8899999998765
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.38 E-value=0.0044 Score=57.76 Aligned_cols=106 Identities=11% Similarity=0.144 Sum_probs=63.7
Q ss_pred ccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccC
Q 038945 217 SCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFC 296 (363)
Q Consensus 217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 296 (363)
+..+.+|+.+.+.. .+..+.. ..+..+++|+.+.+.. .++.+ ...++..+++|+.+.+.. +++.+.
T Consensus 261 F~~c~~L~~i~lp~--~~~~I~~-~aF~~c~~L~~i~l~~--~i~~I-------~~~aF~~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSIGT-GAFMNCPALQDIEFSS--RITEL-------PESVFAGCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEECT-TTTTTCTTCCEEECCT--TCCEE-------CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred eeecccccEEeccc--ccceecC-cccccccccccccCCC--ccccc-------CceeecCCCCcCEEEeCC--cccEeh
Confidence 34567777777743 2333332 2245667777777643 22222 112345677888888763 466665
Q ss_pred CCCcccCCCCccEEeeccCCCcccccCCCc-CCCCcceeecccC
Q 038945 297 LGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEE 339 (363)
Q Consensus 297 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~ 339 (363)
... +..|.+|+++.+.. .++.++.... ++++|+.+++.++
T Consensus 327 ~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 DDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred HhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 554 56678888888842 3666655433 7888888888776
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.36 E-value=2.4e-05 Score=72.79 Aligned_cols=136 Identities=10% Similarity=-0.011 Sum_probs=75.1
Q ss_pred CCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhh----hhccccCeEeeccCcchhhhhccCcccc
Q 038945 197 ANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTS----ESLVNLERMKMSDCKMMEEIIQSQVGEE 271 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (363)
++|++|++++|..-.... .....+++|++|++++| .++......+. ...++|+.|++++|. +.+.... .-
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~---~l 175 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA---VL 175 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH---HH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH---HH
Confidence 577788887775322111 11223557788888776 34433222211 134678888888875 3221000 00
Q ss_pred ccccccccccceecccccccccccCCC---CcccCCCCccEEeeccCCCccc-----ccCCCcCCCCcceeecccC
Q 038945 272 AEDCIVFRKLEYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCPTMKI-----FSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~i~~~ 339 (363)
...+...++|++|++++|. +.+.... ......++|++|++++| .++. ++..+...++|++|++++|
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 1112346788888888863 4432110 01344678899998777 4543 2233446688999999888
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.10 E-value=0.046 Score=50.31 Aligned_cols=106 Identities=9% Similarity=0.142 Sum_probs=55.1
Q ss_pred cCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccccCC
Q 038945 218 CYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFCL 297 (363)
Q Consensus 218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 297 (363)
..+..|+.+.+.. .++.+... .+..+.+|+.+.+... ++.+ ....+..+++|+.+.+.+ ..++.+..
T Consensus 237 ~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l~~~--i~~i-------~~~aF~~c~~L~~i~l~~-~~i~~I~~ 303 (379)
T 4h09_A 237 YGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNFYAK--VKTV-------PYLLCSGCSNLTKVVMDN-SAIETLEP 303 (379)
T ss_dssp TTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEECCC--CSEE-------CTTTTTTCTTCCEEEECC-TTCCEECT
T ss_pred cCCccceEEEcCC--CccEeCcc-ccceeehhcccccccc--ceec-------cccccccccccccccccc-cccceehh
Confidence 3455666666643 24443322 2345566666665432 2221 111234566777776654 24555554
Q ss_pred CCcccCCCCccEEeeccCCCcccccCCC-cCCCCcceeecccC
Q 038945 298 GNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 339 (363)
Q Consensus 298 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~~~ 339 (363)
.. +..|.+|+.+.+.. .++.++... .++++|+++.+..+
T Consensus 304 ~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 304 RV-FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred hh-hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 43 55667777777632 355555433 36677777776544
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.62 E-value=0.081 Score=49.02 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=78.1
Q ss_pred ccccCCCccEEEeccCcCccccc-ccccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCccc
Q 038945 192 SNKVFANLKSLEISECSQLQKLV-PASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGE 270 (363)
Q Consensus 192 ~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 270 (363)
++.+...|+++.+.+. +..+. ..+..+++|+.+.+.. .++.++.. .+..+.+|+.+++.+. ++.+
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~--v~~I------- 325 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPEG--ITQI------- 325 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCTT--CCEE-------
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCce-eecCCCCcCEEEeCCc--ccEe-------
Confidence 3455577788877543 22222 2345688999999863 56666543 3567899999998653 3333
Q ss_pred cccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCcCCCCcceeecccC
Q 038945 271 EAEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 271 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~~ 339 (363)
...++..+.+|+.+.+.. +++.+.... +..|++|+.+.+.+.... . .....+.+|+.+.+..+
T Consensus 326 ~~~aF~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTTTTTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred hHhHhhCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence 122356789999999863 577776654 677999999999764321 1 24457788888888766
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.39 E-value=0.0043 Score=54.61 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=56.5
Q ss_pred ccccccceEecccCcCcccccccCcCCCCCCCCccEEEecCCCCCcccCchhHHhhcC--CCCEEEEccCCCcceecccc
Q 038945 46 IGFRDIENIKLSLFPRLKEIWHNQALPVSFFNNLRHLVLDDCKNMSSAIPANLIRCLN--NLASLEVRNCDSLEEVLHLE 123 (363)
Q Consensus 46 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~l~~L~~L~l~~c~~l~~~~p~~~l~~l~--~L~~L~l~~~~~l~~~~~~~ 123 (363)
..++.|++|+|+++. +..+.... -....+++|+.|+++++ ++.+... +..+. +|++|++++++--..++...
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~-~~~~~l~~L~~L~Ls~N-~i~~~~~---l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERE---LDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGT-THHHHSTTCCEEECTTS-CCCSGGG---GGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCC-CCCCccch-hHHhhCCCCCEEECCCC-ccCCchh---hhhcccCCcceEEccCCcCccccCcch
Confidence 357899999999987 76643211 00136899999999987 5665423 44455 89999999877433332111
Q ss_pred cccccccccCCCCCccceeecc
Q 038945 124 ELNADKEHLCPLFPKLFSLRLI 145 (363)
Q Consensus 124 ~~~~~~~~~~~~l~~L~~L~l~ 145 (363)
.. ...+...+|+|+.|+=.
T Consensus 241 ~y---~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TY---ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HH---HHHHHHHCTTCCEESSC
T ss_pred hH---HHHHHHHCcccCeECCc
Confidence 00 01113368888888754
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.08 E-value=0.67 Score=42.31 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=70.0
Q ss_pred cccCCCccEEEeccCcCcccccc-cccCCCCCCEEeeccCcCccccCchhhhhhccccCeEeeccCcchhhhhccCcccc
Q 038945 193 NKVFANLKSLEISECSQLQKLVP-ASCYLENLATLEVSKCHGLINLLTLSTSESLVNLERMKMSDCKMMEEIIQSQVGEE 271 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 271 (363)
..+...|+.+.+.+. ++.+.. .+..+.+|+.+.+.. .++.++.. .+..+++|+.+.+.+.. ++.+ .
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~~L~~i~l~~~~-i~~I-------~ 302 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGCSNLTKVVMDNSA-IETL-------E 302 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTCTTCCEEEECCTT-CCEE-------C
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccc-ccccccccccccccccc-ccee-------h
Confidence 444567777777543 344422 345677888888854 45555432 35678889988886532 2222 1
Q ss_pred ccccccccccceecccccccccccCCCCcccCCCCccEEeeccCCCcccccCCCc
Q 038945 272 AEDCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV 326 (363)
Q Consensus 272 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 326 (363)
..++..+++|+.+.+.. +++.+.... +..|.+|+.+.+.. .++.+.....
T Consensus 303 ~~aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~ip~--~v~~I~~~aF 352 (379)
T 4h09_A 303 PRVFMDCVKLSSVTLPT--ALKTIQVYA-FKNCKALSTISYPK--SITLIESGAF 352 (379)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred hhhhcCCCCCCEEEcCc--cccEEHHHH-hhCCCCCCEEEECC--ccCEEchhHh
Confidence 12355678888888853 466666554 66788888887742 3555544433
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.06 E-value=0.0017 Score=53.80 Aligned_cols=65 Identities=5% Similarity=0.016 Sum_probs=33.0
Q ss_pred cccCCCccEEEeccCcCcc-----cccccccCCCCCCEEeeccCcCccccCch---hhhhhccccCeEeeccCc
Q 038945 193 NKVFANLKSLEISECSQLQ-----KLVPASCYLENLATLEVSKCHGLINLLTL---STSESLVNLERMKMSDCK 258 (363)
Q Consensus 193 l~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~ 258 (363)
+...+.|++|++++|..+. .+...+...++|++|++++|. +.+-... ..+...++|+.|++++|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445677777777762232 122333445667777776653 3332111 112234566666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.73 E-value=0.0051 Score=54.13 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=44.8
Q ss_pred CCCCccEEEecCCCCCcccCc-hhHHhhcCCCCEEEEccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 75 FFNNLRHLVLDDCKNMSSAIP-ANLIRCLNNLASLEVRNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~~~p-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
.+++|+.|+++++ ++.+..+ ...++.+++|+.|+++++ .+..+..+.. ...+ +|+.|.+++.+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~--------l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK--------IKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGG--------GTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhh--------cccC-CcceEEccCCc
Confidence 6899999999998 5665332 234678999999999875 4655533322 1234 89999999877
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.23 E-value=0.0089 Score=49.39 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=77.4
Q ss_pred cccccCCCceeEEEeeecccceeeecc-CCCc-hhhhhhhccccccccceEecccCcCcccccccCcCC--CCCCCCccE
Q 038945 6 LGILSTPKLHKVQVTVKEEGELYHREG-NLNS-TIQKCYIEMIGFRDIENIKLSLFPRLKEIWHNQALP--VSFFNNLRH 81 (363)
Q Consensus 6 ~~~~~~~~L~~l~~~~~~~~~~~~~~~-~l~~-~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~--~~~l~~L~~ 81 (363)
......++|++|+++ +. .+.. ....+...+...++|++|+|+++. +.+..... +. ....++|++
T Consensus 30 ~~l~~~~~L~~L~L~----------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~-l~~~L~~n~~L~~ 97 (185)
T 1io0_A 30 RIQNNDPDLEEVNLN----------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFA-LAEMLKVNNTLKS 97 (185)
T ss_dssp HHHTTCTTCCEEECT----------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHH-HHHHHHHCSSCCE
T ss_pred HHHhcCCCCCEEEec----------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHH-HHHHHHhCCCcCE
Confidence 345678999999998 22 3333 455566667778999999999997 76521111 10 024578999
Q ss_pred EEecCCCCCcccCc---hhHHhhcCCCCEEEE--ccCCCcceecccccccccccccCCCCCccceeeccccc
Q 038945 82 LVLDDCKNMSSAIP---ANLIRCLNNLASLEV--RNCDSLEEVLHLEELNADKEHLCPLFPKLFSLRLIDLP 148 (363)
Q Consensus 82 L~l~~c~~l~~~~p---~~~l~~l~~L~~L~l--~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 148 (363)
|++++| .+.+... ...+...++|++|++ +++ .+....... ........++|+.|+++++.
T Consensus 98 L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~-----l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 98 LNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEME-----IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp EECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHH-----HHHHHHHCSSCCEEECCCSS
T ss_pred EECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHH-----HHHHHHhCCCcCEEeccCCC
Confidence 999998 4553221 223667789999999 554 344321100 00012245789999998764
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.17 E-value=0.36 Score=37.10 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=32.1
Q ss_pred CC-CccEEeeccCCCcccccCCCc-CCCCcceeecccCCCCCCccccCCcch
Q 038945 304 FP-SLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEEEDGDDEGCWEGNLN 353 (363)
Q Consensus 304 ~~-~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~~~~~~~~~~~~~~~~~ 353 (363)
+| +|++|+++++ +++.++.+.. .+++|+.|++++| ++..+.++.
T Consensus 29 lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-----P~~CdC~l~ 74 (130)
T 3rfe_A 29 FPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN-----PWRCDCRLV 74 (130)
T ss_dssp CCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS-----CCBCSGGGH
T ss_pred CCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCC-----CeeccCccH
Confidence 44 6899999554 7888887665 7889999999999 544444443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.56 E-value=1.2 Score=34.10 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCCcccCchhHHhhcCCCCEEEEccC
Q 038945 77 NNLRHLVLDDCKNMSSAIPANLIRCLNNLASLEVRNC 113 (363)
Q Consensus 77 ~~L~~L~l~~c~~l~~~~p~~~l~~l~~L~~L~l~~~ 113 (363)
++|++|+++++ +++. ++.+.+..+++|+.|++.++
T Consensus 31 ~~l~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTA-LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTS-CCSS-CCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCc-cChhhhhhccccCEEEecCC
Confidence 35777777765 4443 44455666777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=71.49 E-value=1.5 Score=36.28 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCccEEEeccCcCcc-----cccccccCCCCCCEEeeccCcCccccCchh---hhhhccccCeEeeccCc
Q 038945 197 ANLKSLEISECSQLQ-----KLVPASCYLENLATLEVSKCHGLINLLTLS---TSESLVNLERMKMSDCK 258 (363)
Q Consensus 197 ~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~ 258 (363)
+.|++|+++++..+. .+...+..-..|+.|++++| .+.+..... .+..-+.|+.|++..+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 677888887653332 22233344567777777765 344332211 22234567777776654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=65.24 E-value=3.3 Score=34.21 Aligned_cols=117 Identities=11% Similarity=0.035 Sum_probs=65.0
Q ss_pred cCCCCCCEEeeccCcCccccCchh---hhhhccccCeEeeccCcchhhhhccCccccccccccccccceecccccccccc
Q 038945 218 CYLENLATLEVSKCHGLINLLTLS---TSESLVNLERMKMSDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTS 294 (363)
Q Consensus 218 ~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 294 (363)
..-+.|++|+++++..+.+-.... .+..-..|+.|++++|.. .+.-+.. -.+.+..-+.|+.|+|..+ .+.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i-gd~ga~a---lA~aL~~N~tL~~L~L~~N-~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI-SDSEARG---LIELIETSPSLRVLNVESN-FLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC-BHHHHTT---HHHHHHHCSSCCEEECCSS-BCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC-ChHHHHH---HHHHHhcCCccCeEecCCC-cCCH
Confidence 345789999998765555432222 233447899999998763 2211110 0111233467999999875 3332
Q ss_pred cCCCC---cccCCCCccEEeeccCCC--ccc-----ccCCCcCCCCcceeecccC
Q 038945 295 FCLGN---YALEFPSLEHVVVRQCPT--MKI-----FSQGVVDAPKLNKVKPTEE 339 (363)
Q Consensus 295 ~~~~~---~~~~~~~L~~L~l~~c~~--l~~-----l~~~~~~~~~L~~L~i~~~ 339 (363)
..... ....-+.|++|+++++.. +.. +...+..-+.|++|+++.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 11110 022234699999976532 321 2233445678888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.92 E-value=90 Score=22.13 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=27.7
Q ss_pred ccccccccceecccccccccccCCCCcccCCCCccEEeeccC
Q 038945 274 DCIVFRKLEYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 315 (363)
Q Consensus 274 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 315 (363)
++..+.+|+.+.+-. +++.+.... +..|.+|+.+.+.+-
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~a-F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGM-FSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTS-STTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCC--chheEcHHH-HhccCCccEEEEcCC
Confidence 356678888888864 566665554 667888988888654
Done!