Your job contains 1 sequence.
>038950
MAVVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKF
NVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD
GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF
QSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYE
LEESAFDGFLYGMDSRIERKPAEIMMLQYMQPLMIPQPLLVPTQFHHPLALSYYVPA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038950
(297 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2197669 - symbol:AT1G61470 species:3702 "Arabi... 440 1.7e-41 1
TAIR|locus:2095705 - symbol:AT3G44240 species:3702 "Arabi... 440 1.7e-41 1
TAIR|locus:2010414 - symbol:AT1G27890 species:3702 "Arabi... 437 3.6e-41 1
TAIR|locus:2029826 - symbol:AT1G27820 species:3702 "Arabi... 431 1.6e-40 1
TAIR|locus:2009220 - symbol:AT1G06450 species:3702 "Arabi... 407 5.5e-38 1
TAIR|locus:2176307 - symbol:CAF1b "CCR4- associated facto... 401 2.4e-37 1
TAIR|locus:2095715 - symbol:CAF1a "CCR4- associated facto... 390 3.5e-36 1
DICTYBASE|DDB_G0284217 - symbol:DDB_G0284217 "CAF1 family... 387 7.2e-36 1
TAIR|locus:2045512 - symbol:AT2G32070 species:3702 "Arabi... 386 9.2e-36 1
ZFIN|ZDB-GENE-040426-2845 - symbol:cnot8 "CCR4-NOT transc... 383 1.9e-35 1
DICTYBASE|DDB_G0285269 - symbol:DDB_G0285269 "CAF1 family... 375 1.3e-34 1
UNIPROTKB|E1BJH0 - symbol:CNOT8 "Uncharacterized protein"... 374 1.7e-34 1
UNIPROTKB|E2RID4 - symbol:CNOT8 "Uncharacterized protein"... 374 1.7e-34 1
UNIPROTKB|Q9UFF9 - symbol:CNOT8 "CCR4-NOT transcription c... 374 1.7e-34 1
UNIPROTKB|F2Z590 - symbol:CNOT8 "Uncharacterized protein"... 374 1.7e-34 1
MGI|MGI:1916375 - symbol:Cnot8 "CCR4-NOT transcription co... 374 1.7e-34 1
RGD|1306401 - symbol:Cnot8 "CCR4-NOT transcription comple... 371 3.6e-34 1
UNIPROTKB|F1NYH4 - symbol:CNOT8 "Uncharacterized protein"... 369 5.8e-34 1
ZFIN|ZDB-GENE-061013-29 - symbol:cnot7 "CCR4-NOT transcri... 367 9.5e-34 1
FB|FBgn0036239 - symbol:Pop2 "Pop2" species:7227 "Drosoph... 366 1.2e-33 1
POMBASE|SPCC18.06c - symbol:caf1 "CCR4-Not complex CAF1 f... 363 2.5e-33 1
TAIR|locus:2200532 - symbol:AT1G15920 species:3702 "Arabi... 363 2.5e-33 1
UNIPROTKB|Q5ZJV9 - symbol:CNOT7 "CCR4-NOT transcription c... 362 3.2e-33 1
UNIPROTKB|Q3ZC01 - symbol:CNOT7 "CCR4-NOT transcription c... 362 3.2e-33 1
UNIPROTKB|E2RMU2 - symbol:CNOT7 "Uncharacterized protein"... 362 3.2e-33 1
UNIPROTKB|Q9UIV1 - symbol:CNOT7 "CCR4-NOT transcription c... 362 3.2e-33 1
MGI|MGI:1298230 - symbol:Cnot7 "CCR4-NOT transcription co... 362 3.2e-33 1
TAIR|locus:2183765 - symbol:AT5G10960 species:3702 "Arabi... 341 5.4e-31 1
UNIPROTKB|F1SET4 - symbol:CNOT7 "Uncharacterized protein"... 339 8.8e-31 1
UNIPROTKB|F2Z5J3 - symbol:CNOT7 "Uncharacterized protein"... 295 4.0e-26 1
RGD|1305313 - symbol:Cnot7 "CCR4-NOT transcription comple... 295 4.0e-26 1
UNIPROTKB|H0YAV9 - symbol:CNOT7 "CCR4-NOT transcription c... 276 4.2e-24 1
WB|WBGene00000369 - symbol:ccf-1 species:6239 "Caenorhabd... 275 5.3e-24 1
UNIPROTKB|B0AZS3 - symbol:CNOT8 "cDNA FLJ50580, highly si... 242 1.7e-20 1
SGD|S000005335 - symbol:POP2 "RNase of the DEDD superfami... 242 5.2e-20 1
ASPGD|ASPL0000066297 - symbol:caf1 species:162425 "Emeric... 174 9.2e-19 2
UNIPROTKB|E5RGE4 - symbol:CNOT8 "CCR4-NOT transcription c... 192 3.3e-15 1
UNIPROTKB|E5RGH2 - symbol:CNOT7 "CCR4-NOT transcription c... 192 3.3e-15 1
UNIPROTKB|G4MUF8 - symbol:MGG_01666 "CCR4-NOT transcripti... 200 4.2e-14 1
CGD|CAL0001422 - symbol:POP2 species:5476 "Candida albica... 188 1.8e-12 1
UNIPROTKB|Q5A8L5 - symbol:POP2 "Potential mRNA deadenylas... 188 1.8e-12 1
UNIPROTKB|E5RJC5 - symbol:CNOT8 "CCR4-NOT transcription c... 161 1.3e-11 1
UNIPROTKB|E5RK92 - symbol:CNOT8 "CCR4-NOT transcription c... 157 3.6e-11 1
UNIPROTKB|E5RIL2 - symbol:CNOT8 "CCR4-NOT transcription c... 159 1.9e-10 1
UNIPROTKB|E5RIU0 - symbol:CNOT8 "CCR4-NOT transcription c... 148 3.8e-10 1
UNIPROTKB|B7Z8R1 - symbol:CNOT8 "CCR4-NOT transcription c... 159 4.7e-10 1
UNIPROTKB|B7Z9U0 - symbol:CNOT8 "cDNA, FLJ78954, highly s... 140 3.0e-09 1
UNIPROTKB|E5RHP3 - symbol:CNOT8 "CCR4-NOT transcription c... 136 8.5e-09 1
UNIPROTKB|E5RHL9 - symbol:CNOT8 "CCR4-NOT transcription c... 127 8.6e-08 1
UNIPROTKB|E5RFJ4 - symbol:CNOT8 "CCR4-NOT transcription c... 115 1.8e-06 1
POMBASE|SPBC29A10.09c - symbol:SPBC29A10.09c "CAF1 family... 98 6.5e-05 3
>TAIR|locus:2197669 [details] [associations]
symbol:AT1G61470 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AC004255 IPI:IPI00518166
PIR:H96639 RefSeq:NP_176342.1 UniGene:At.51196 HSSP:O95453
ProteinModelPortal:O64773 SMR:O64773 PRIDE:O64773 DNASU:842441
EnsemblPlants:AT1G61470.1 GeneID:842441 KEGG:ath:AT1G61470
TAIR:At1g61470 InParanoid:O64773 OMA:GVSARIC PhylomeDB:O64773
Genevestigator:O64773 Uniprot:O64773
Length = 278
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 112/278 (40%), Positives = 158/278 (56%)
Query: 10 VWCENFEIVMRFL-DKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLI 68
VW N + M + D L +C N ++IDTEFPG L+ TP +A Y D+KFNVD THLI
Sbjct: 5 VWRWNKQAEMNSIRDCLKHC-NSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63
Query: 69 QLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFA 128
QLG+TL K G I+ T+E N SDF+ K L SI LK++GLD DKIR++GI F
Sbjct: 64 QLGLTLFGK-G-ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 121
Query: 129 PRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSG-VAALFFQSVFDIK 187
F ++L++ ++WVTF G YD AYL+K T LP T++ F V L + V+D+K
Sbjct: 122 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVK 181
Query: 188 VVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFD 247
+AG C A +L ++R G AHHAGSDS LTA VF ++ ++L S +
Sbjct: 182 KMAGLCSGLSSRFGLQRI-ADVLQMRRVGKAHHAGSDSELTARVFTKLI--FDLVNSRKE 238
Query: 248 GFLYGMDSRIERKPAEIMMLQYMQPLMIPQPLL-VPTQ 284
R + + ++ Q+ Q LM+ + + +P Q
Sbjct: 239 S----TGRRADDQQYQLEQQQHQQQLMMTRCYIPIPVQ 272
>TAIR|locus:2095705 [details] [associations]
symbol:AT3G44240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 ProtClustDB:CLSN2679330 EMBL:AL353865 IPI:IPI00548745
PIR:T49140 RefSeq:NP_190010.1 UniGene:At.53726
ProteinModelPortal:Q9LXM4 SMR:Q9LXM4 PRIDE:Q9LXM4 DNASU:823549
EnsemblPlants:AT3G44240.1 GeneID:823549 KEGG:ath:AT3G44240
TAIR:At3g44240 InParanoid:Q9LXM4 OMA:DINGRIG PhylomeDB:Q9LXM4
Genevestigator:Q9LXM4 Uniprot:Q9LXM4
Length = 239
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 98/223 (43%), Positives = 132/223 (59%)
Query: 19 MRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKE 78
M ++ L + ++IDTEFP LR T ++A E Y D+ F+VD LIQLG+TL D
Sbjct: 1 MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60
Query: 79 GKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH 138
G+I T+E NFSDF + D SI+ L+ +GLD KIR++GI F +L K
Sbjct: 61 GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 119
Query: 139 RENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXX 198
R N+ WVTFHG YD+AYL+K FT +ALP T+E FS A SV+D+KV+AG C
Sbjct: 120 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSS 179
Query: 199 XXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYEL 241
A + R G AHHAGS++ LTA VFA++ + + L
Sbjct: 180 RLGLETL-AHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221
>TAIR|locus:2010414 [details] [associations]
symbol:AT1G27890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 EMBL:AC069471 GO:GO:0003723
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
ProtClustDB:CLSN2679330 IPI:IPI00532627 PIR:B86404
RefSeq:NP_174110.1 UniGene:At.66896 ProteinModelPortal:Q9C6M9
SMR:Q9C6M9 DNASU:839682 EnsemblPlants:AT1G27890.1 GeneID:839682
KEGG:ath:AT1G27890 TAIR:At1g27890 InParanoid:Q9C6M9 OMA:EFHETVE
PhylomeDB:Q9C6M9 Genevestigator:Q9C6M9 Uniprot:Q9C6M9
Length = 302
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 114/283 (40%), Positives = 152/283 (53%)
Query: 10 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQ 69
VW N E+ M + L F+ ++IDTEFPG L+ TP +A Y D+KFNVD THLIQ
Sbjct: 4 VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 63
Query: 70 LGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAP 129
LG TL D+ G I+ T+E N SDF+ K SI LK +GL+ DKI ++GI F
Sbjct: 64 LGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFR 122
Query: 130 RFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAF-SGVAALFFQSVFDIK 187
F ++L + + WV F G YD AYLVK T LP T E F V L + VFD+K
Sbjct: 123 DFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVK 182
Query: 188 VVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFD 247
+A C A +L +KR G AHHAGSDS LTA VF ++ ++L S
Sbjct: 183 KIAESCSGLSSRFGLQRI-ADVLQMKRVGKAHHAGSDSELTARVFTKLT--FDLLNSRKQ 239
Query: 248 GFLYGMDSRIERKPAEIMMLQ-YMQ-PLMIPQPLLVPTQFHHP 288
+ + + ++MM + Y+ P+ IP+P V HHP
Sbjct: 240 CVRRVDHQQYQLEQQQLMMTRCYIPIPIPIPRPRSVMFAAHHP 282
>TAIR|locus:2029826 [details] [associations]
symbol:AT1G27820 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC012375
EMBL:AC079280 GO:GO:0090305 SUPFAM:SSF53098 eggNOG:COG5228
HOGENOM:HOG000173077 KO:K12581 GO:GO:0004535 HSSP:P39008
IPI:IPI00519263 PIR:C86403 RefSeq:NP_174103.1 UniGene:At.51794
ProteinModelPortal:Q9SFX6 SMR:Q9SFX6 PRIDE:Q9SFX6 DNASU:839676
EnsemblPlants:AT1G27820.1 GeneID:839676 KEGG:ath:AT1G27820
TAIR:At1g27820 InParanoid:Q9SFX6 OMA:DDLLYQQ PhylomeDB:Q9SFX6
ProtClustDB:CLSN2679330 Genevestigator:Q9SFX6 Uniprot:Q9SFX6
Length = 310
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 115/286 (40%), Positives = 154/286 (53%)
Query: 10 VWCENFEIVMRFL-DKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLI 68
VW N E+ M + D L +C ++ +IDTEFPG L+ TP +A Y D+KFNVD THLI
Sbjct: 9 VWRWNKEVEMNSIRDCLKHCSSI-AIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67
Query: 69 QLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFA 128
QLG TL D+ G + T+E N SDFD K SI LK +GL+ DKIR++GI F
Sbjct: 68 QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 126
Query: 129 PRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAF-SGVAALFFQSVFDI 186
F ++L++ + WV F G YD AYLVK T LP T E F V L + VFD+
Sbjct: 127 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 186
Query: 187 KVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAF 246
K +A C A +L +KR G AHHAGSDS LTA VF ++ ++L S
Sbjct: 187 KKIAESCSGLSSQFGLQRI-ADVLQMKRVGKAHHAGSDSELTARVFTKLT--FDLLNSRK 243
Query: 247 DGF--LYGMDSRIERKP-AEIMMLQYMQPLMIPQPLLVPTQF--HH 287
+ ++E++ + MM + P+ +P P P F HH
Sbjct: 244 QSVRRVDHQQFQLEQQQHQQFMMTRCYIPIPMPIPRPRPVMFAAHH 289
>TAIR|locus:2009220 [details] [associations]
symbol:AT1G06450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 EMBL:AC007592
GO:GO:0090305 SUPFAM:SSF53098 EMBL:AK118108 EMBL:BT005529
IPI:IPI00537229 PIR:D86200 RefSeq:NP_172133.1 UniGene:At.24926
UniGene:At.66805 ProteinModelPortal:Q9SHJ0 SMR:Q9SHJ0 IntAct:Q9SHJ0
DNASU:837157 EnsemblPlants:AT1G06450.1 GeneID:837157
KEGG:ath:AT1G06450 TAIR:At1g06450 eggNOG:COG5228
HOGENOM:HOG000173077 InParanoid:Q9SHJ0 KO:K12581 OMA:DEEMARM
PhylomeDB:Q9SHJ0 ProtClustDB:CLSN2914145 Genevestigator:Q9SHJ0
GO:GO:0004535 Uniprot:Q9SHJ0
Length = 360
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 102/291 (35%), Positives = 155/291 (53%)
Query: 10 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQ 69
VW N + M + + L F +++ DTE+PG + T ++ + E Y +K NV+ T LIQ
Sbjct: 12 VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKLIQ 71
Query: 70 LGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCV--F 127
G TL + +G+I +E NFS+F D SI+ L+ GLD KIR +G+ F
Sbjct: 72 CGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGF 131
Query: 128 APRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIK 187
P+ + V + ++++++VTF G YD AY + I + LP T F+ F V+D K
Sbjct: 132 FPKLMTVF-RSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTK 190
Query: 188 VVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFD 247
V+AG+C A++L + R G AHHAGSDSL+TA VF ++K+ YE +S F
Sbjct: 191 VMAGFCEGLGEHLGLSKL-AQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE--DSRFA 247
Query: 248 -GFLYGMD-SRIERKPAEIMMLQYMQPLMIPQPLLVPTQFHHPLALSYYVP 296
G +YG+ S + PA + + PLM Q + FH+ +Y P
Sbjct: 248 RGLIYGIGKSNLVAAPAPAPVPEPTLPLMCQQNVASYPVFHNGYVQNYEQP 298
>TAIR|locus:2176307 [details] [associations]
symbol:CAF1b "CCR4- associated factor 1b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009451 "RNA modification"
evidence=ISS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0009693 "ethylene biosynthetic process" evidence=RCA]
[GO:0009738 "abscisic acid mediated signaling pathway"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009873 "ethylene mediated signaling
pathway" evidence=RCA] [GO:0010200 "response to chitin"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0035556 "intracellular
signal transduction" evidence=RCA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 ProtClustDB:CLSN2684465 GO:GO:0000289
EMBL:AB007651 EMBL:AY063985 EMBL:BT001962 IPI:IPI00540783
RefSeq:NP_197617.1 UniGene:At.27479 ProteinModelPortal:Q9FMS6
SMR:Q9FMS6 STRING:Q9FMS6 PRIDE:Q9FMS6 DNASU:832285
EnsemblPlants:AT5G22250.1 GeneID:832285 KEGG:ath:AT5G22250
TAIR:At5g22250 InParanoid:Q9FMS6 OMA:HIMRFCE PhylomeDB:Q9FMS6
Genevestigator:Q9FMS6 Uniprot:Q9FMS6
Length = 278
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 100/265 (37%), Positives = 138/265 (52%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP----RNAPAVESYNDLKFNV 62
I +VW N E + ++ + +S+DTEFPG + R YN LK NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 63 DCTHLIQLGITLSDKEGKIS---------YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLD 113
D LIQ+G+TLSD +G + Y +EFNF DFD+++D HA DSI+LL+ G+D
Sbjct: 74 DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGID 133
Query: 114 FDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFS 173
F++ R++G+ FA + E++ WVTFH YD YLVKI T LP F
Sbjct: 134 FERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFL 193
Query: 174 GVAALFF-QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRH-GGAHHAGSDSLLTAAV 231
G+ FF V+D+K + +C AR L V R G H AGSDSLLT
Sbjct: 194 GLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRV--ARSLEVNRAVGKCHQAGSDSLLTWQA 251
Query: 232 FAEMKNRYELEESA--FDGFLYGMD 254
F M++ Y +E+ A G LYG++
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLE 276
>TAIR|locus:2095715 [details] [associations]
symbol:CAF1a "CCR4- associated factor 1a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0002213 "defense response to
insect" evidence=IEP] [GO:0009611 "response to wounding"
evidence=IEP;RCA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IDA] [GO:0042742 "defense response to bacterium"
evidence=IEP] [GO:0009612 "response to mechanical stimulus"
evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
evidence=RCA] [GO:0009873 "ethylene mediated signaling pathway"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009611 GO:GO:0006355 GO:GO:0046872
GO:GO:0042742 GO:GO:0006351 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL353865 EMBL:AY050848 EMBL:AY117220
IPI:IPI00543904 PIR:T49142 RefSeq:NP_190012.1 UniGene:At.1713
ProteinModelPortal:Q9LXM2 SMR:Q9LXM2 IntAct:Q9LXM2 STRING:Q9LXM2
PRIDE:Q9LXM2 DNASU:823551 EnsemblPlants:AT3G44260.1 GeneID:823551
KEGG:ath:AT3G44260 TAIR:At3g44260 InParanoid:Q9LXM2 OMA:GPEKHAG
PhylomeDB:Q9LXM2 ProtClustDB:CLSN2684465 Genevestigator:Q9LXM2
GO:GO:0000289 Uniprot:Q9LXM2
Length = 280
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 97/268 (36%), Positives = 141/268 (52%)
Query: 1 MAVVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVESYNDLK 59
+ VV++ VW EN E + ++++ + +S+DTEFPG + ++ R + Y LK
Sbjct: 15 VTVVTR--EVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLK 72
Query: 60 FNVDCTHLIQLGITLSDKEGKI---------SYTFEFNFSDFDLKKDLHAGDSIQLLKDS 110
NVD LIQ+G+TLSD G + + +EFNF DFD+ +D HA DSI+LL+
Sbjct: 73 ANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQ 132
Query: 111 GLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAE 170
G+DF++ +DG+ FA + E + WVTFH YD YL+KI T LP
Sbjct: 133 GIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALG 192
Query: 171 AFSGVA-ALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRH-GGAHHAGSDSLLT 228
F V LF + V+D+K + +C AR L V R G H AGSDSLLT
Sbjct: 193 EFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRV--ARTLEVNRAVGKCHQAGSDSLLT 250
Query: 229 AAVFAEMKNRYELEESA--FDGFLYGMD 254
F M++ Y +++ G LYG++
Sbjct: 251 WHAFQRMRDLYFVQDGPEKHAGVLYGLE 278
>DICTYBASE|DDB_G0284217 [details] [associations]
symbol:DDB_G0284217 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0284217 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
EMBL:AAFI02000064 eggNOG:COG5228 KO:K12581 OMA:FEDNIDH
RefSeq:XP_638651.1 ProteinModelPortal:Q54PZ4 SMR:Q54PZ4
STRING:Q54PZ4 EnsemblProtists:DDB0237638 GeneID:8624481
KEGG:ddi:DDB_G0284217 Uniprot:Q54PZ4
Length = 367
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 91/258 (35%), Positives = 139/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYN--DLKFNVD 63
+I +VW N + M + L++ +N +++DTEFPG + N + Y+ L+ NVD
Sbjct: 8 EIKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDYHYQTLRLNVD 67
Query: 64 CTHLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T SD EG ++ T++FNF F L +D++A DSI LL SG++F K +
Sbjct: 68 QLKIIQLGLTFSDSEGNLAKPTCTWQFNFK-FSLSEDMYAQDSIDLLSRSGIEFKKNEAN 126
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI F + + +N+KW++FH YD YL+K T LP F G A +F
Sbjct: 127 GIDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCTVLPLDEADFFGSARTYF 186
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++DIK + C A L++KR G H AGSDSLLT+ F +M+ +
Sbjct: 187 PCIYDIKYIMKSCKNLKGGLSEL---ADDLDIKRIGPQHQAGSDSLLTSTTFFKMRKMFF 243
Query: 240 --ELEESAFDGFLYGMDS 255
+L++S + LYG+ S
Sbjct: 244 ENQLDDSKYLNILYGLSS 261
>TAIR|locus:2045512 [details] [associations]
symbol:AT2G32070 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AC006223 EMBL:AY050946 EMBL:AY142584
IPI:IPI00542830 PIR:F84728 RefSeq:NP_565735.1 UniGene:At.22347
ProteinModelPortal:Q9SKZ2 SMR:Q9SKZ2 PaxDb:Q9SKZ2 PRIDE:Q9SKZ2
EnsemblPlants:AT2G32070.1 GeneID:817767 KEGG:ath:AT2G32070
TAIR:At2g32070 InParanoid:Q949R6 OMA:FEDNIDH PhylomeDB:Q9SKZ2
ProtClustDB:CLSN2917211 Genevestigator:Q9SKZ2 Uniprot:Q9SKZ2
Length = 275
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 93/259 (35%), Positives = 142/259 (54%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVD 63
+I VW +N E M + ++++ F +++DTEFPG + R E Y LK NV+
Sbjct: 11 QIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVN 70
Query: 64 CTHLIQLGITLSDKEGKI-------SYT-FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFD 115
+IQLG+T SD++G + Y ++FNF +FDL+ D++A DSI+LL+ SG+DF
Sbjct: 71 ILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFV 130
Query: 116 KIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGV 175
K + GI FA + EN+ WVTFH YD YL+K+ T LP T F +
Sbjct: 131 KNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEM 190
Query: 176 AALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
+++F V+DIK + +C A +L+V+R G H AGSDSLLT+ F ++
Sbjct: 191 ISVYFPRVYDIKHLMKFCNSLHGGLNKL---AELLDVERVGICHQAGSDSLLTSCTFRKL 247
Query: 236 KNRYELEE-SAFDGFLYGM 253
+ + + + G LYG+
Sbjct: 248 QENFFIGSMEKYSGVLYGL 266
>ZFIN|ZDB-GENE-040426-2845 [details] [associations]
symbol:cnot8 "CCR4-NOT transcription complex,
subunit 8" species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 ZFIN:ZDB-GENE-040426-2845 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 KO:K12581 HSSP:P39008
HOVERGEN:HBG051044 CTD:9337 PANTHER:PTHR10797:SF1 EMBL:BC055263
IPI:IPI00734891 RefSeq:NP_998644.1 UniGene:Dr.76589
ProteinModelPortal:Q7SXS5 SMR:Q7SXS5 STRING:Q7SXS5 GeneID:406788
KEGG:dre:406788 InParanoid:Q7SXS5 NextBio:20818299
ArrayExpress:Q7SXS5 Uniprot:Q7SXS5
Length = 285
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 93/264 (35%), Positives = 145/264 (54%)
Query: 1 MAVVSKIL-NVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYND 57
+A S+I+ VW N E MR + +++ +N +++DTEFPG + R V+ Y
Sbjct: 5 LADTSQIICEVWASNVEEEMRKIRQIIQNYNYIAMDTEFPGVVVRPIGEFRSTVDYQYQL 64
Query: 58 LKFNVDCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDF 114
L+ NVD ++QLG+T +++G + T++FNF F+L +D+++ DSI LL++SGL F
Sbjct: 65 LRCNVDLLKIVQLGLTFMNEDGDYPPGTTTWQFNFK-FNLTEDMYSQDSIDLLQNSGLQF 123
Query: 115 DKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSG 174
K ++GI FA + EN+KW++FH YD YLVK+ T+ LP F
Sbjct: 124 KKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDSRLPEEEHEFFQ 183
Query: 175 VAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAE 234
+ LFF +++D+K + C A L +KR G H AGSDSLLT F
Sbjct: 184 ILNLFFPAIYDVKYLMKSCKNLKGGLQEV---ADQLELKRIGRQHQAGSDSLLTGMAFFR 240
Query: 235 MKNRY---ELEESAFDGFLYGMDS 255
MK + ++++ + G LYG+ S
Sbjct: 241 MKELFFEDNIDDAKYCGRLYGLGS 264
>DICTYBASE|DDB_G0285269 [details] [associations]
symbol:DDB_G0285269 "CAF1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
dictyBase:DDB_G0285269 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:COG5228 EMBL:AAFI02000077 RefSeq:XP_638302.1
ProteinModelPortal:Q54NG7 SMR:Q54NG7 EnsemblProtists:DDB0237639
GeneID:8625019 KEGG:ddi:DDB_G0285269 OMA:GHEIREV
ProtClustDB:CLSZ2728930 Uniprot:Q54NG7
Length = 309
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 86/255 (33%), Positives = 135/255 (52%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYN--DLKFNVD 63
+I VW N E M + +L++ + ++IDTEFPGF+ + YN L+ NVD
Sbjct: 46 EIREVWAHNLEYEMSLIRELVDIYPCVAIDTEFPGFVNKPIESMRMYPDYNYQTLRSNVD 105
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQ GIT SD G + + T++FNF F LK D+++ +I+LLK G+DF +I
Sbjct: 106 LLKIIQFGITFSDSTGCLPVPTCTWQFNFK-FSLKDDMYSPYAIELLKSCGIDFQRIEDY 164
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI F+ F+ + ++W+ FHG YD YL+K+ + LP + F + ++F
Sbjct: 165 GIDVNDFSELFISSGIVLNDKIQWICFHGGYDFGYLLKVLSCSELPKSESDFFDLLRIYF 224
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A LNV R G H AGSDSLLT + F +++ +
Sbjct: 225 PCIYDVKYLMKSCKNLKGGLSGL---AEDLNVVRVGPQHQAGSDSLLTNSTFFKLREEFF 281
Query: 240 --ELEESAFDGFLYG 252
E+++ + G LYG
Sbjct: 282 ENEIDDHKYKGILYG 296
>UNIPROTKB|E1BJH0 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 CTD:9337
OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:DAAA02020720 IPI:IPI00716972
RefSeq:NP_001179703.1 UniGene:Bt.103461 ProteinModelPortal:E1BJH0
SMR:E1BJH0 PRIDE:E1BJH0 Ensembl:ENSBTAT00000016027 GeneID:533443
KEGG:bta:533443 NextBio:20876038 Uniprot:E1BJH0
Length = 292
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 89/265 (33%), Positives = 146/265 (55%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>UNIPROTKB|E2RID4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 KO:K12581
GeneTree:ENSGT00390000000080 CTD:9337 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AAEX03003072 RefSeq:XP_546280.1
ProteinModelPortal:E2RID4 SMR:E2RID4 PRIDE:E2RID4
Ensembl:ENSCAFT00000027939 GeneID:489162 KEGG:cfa:489162
NextBio:20862371 Uniprot:E2RID4
Length = 292
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 89/265 (33%), Positives = 146/265 (55%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>UNIPROTKB|Q9UFF9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR027212
Pfam:PF04857 GO:GO:0005829 GO:GO:0005634 GO:GO:0008285
EMBL:CH471062 GO:GO:0003700 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0000289 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AF053318
EMBL:AF180476 EMBL:AF087844 EMBL:AL122045 EMBL:AK025358
EMBL:AK314317 EMBL:BT006857 EMBL:BC017366 IPI:IPI00295501
PIR:T34529 PIR:T52257 RefSeq:NP_004770.4 UniGene:Hs.26703
ProteinModelPortal:Q9UFF9 SMR:Q9UFF9 DIP:DIP-29084N IntAct:Q9UFF9
MINT:MINT-155732 STRING:Q9UFF9 PhosphoSite:Q9UFF9 DMDM:15213949
PRIDE:Q9UFF9 DNASU:9337 Ensembl:ENST00000285896
Ensembl:ENST00000403027 Ensembl:ENST00000517876 GeneID:9337
KEGG:hsa:9337 UCSC:uc003lvu.3 CTD:9337 GeneCards:GC05P154218
HGNC:HGNC:9207 HPA:HPA051398 MIM:603731 neXtProt:NX_Q9UFF9
PharmGKB:PA26679 InParanoid:Q9UFF9 OMA:QPQNGLS PhylomeDB:Q9UFF9
ChiTaRS:CNOT8 GenomeRNAi:9337 NextBio:34971 ArrayExpress:Q9UFF9
Bgee:Q9UFF9 CleanEx:HS_CNOT8 Genevestigator:Q9UFF9
GermOnline:ENSG00000155508 PANTHER:PTHR10797:SF1 Uniprot:Q9UFF9
Length = 292
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 89/265 (33%), Positives = 146/265 (55%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>UNIPROTKB|F2Z590 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 KO:K12581 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:CU633659 RefSeq:XP_003134168.1
ProteinModelPortal:F2Z590 SMR:F2Z590 PRIDE:F2Z590
Ensembl:ENSSSCT00000018582 GeneID:100525087 KEGG:ssc:100525087
Uniprot:F2Z590
Length = 292
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 89/265 (33%), Positives = 146/265 (55%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>MGI|MGI:1916375 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 MGI:MGI:1916375 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0006351 GO:GO:0003676
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:AK007581
EMBL:AK075727 EMBL:AK150757 EMBL:AK153907 EMBL:BC004040
IPI:IPI00112188 RefSeq:NP_081225.1 UniGene:Mm.28910
ProteinModelPortal:Q9D8X5 SMR:Q9D8X5 STRING:Q9D8X5
PhosphoSite:Q9D8X5 PaxDb:Q9D8X5 PRIDE:Q9D8X5 DNASU:69125
Ensembl:ENSMUST00000020822 Ensembl:ENSMUST00000108843 GeneID:69125
KEGG:mmu:69125 InParanoid:Q9D8X5 NextBio:328658 Bgee:Q9D8X5
CleanEx:MM_CNOT8 Genevestigator:Q9D8X5
GermOnline:ENSMUSG00000020515 Uniprot:Q9D8X5
Length = 292
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 89/265 (33%), Positives = 146/265 (55%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>RGD|1306401 [details] [associations]
symbol:Cnot8 "CCR4-NOT transcription complex, subunit 8"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 RGD:1306401
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473948
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
CTD:9337 OMA:QPQNGLS PANTHER:PTHR10797:SF1 EMBL:BC085856
IPI:IPI00198058 RefSeq:NP_001008383.1 UniGene:Rn.203142 SMR:Q5U2U9
STRING:Q5U2U9 Ensembl:ENSRNOT00000003555 GeneID:363603
KEGG:rno:363603 UCSC:RGD:1306401 InParanoid:Q5U2U9 NextBio:683758
Genevestigator:Q5U2U9 Uniprot:Q5U2U9
Length = 292
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 89/265 (33%), Positives = 145/265 (54%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + + + ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIRETVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>UNIPROTKB|F1NYH4 [details] [associations]
symbol:CNOT8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000000080 OMA:QPQNGLS
PANTHER:PTHR10797:SF1 EMBL:AADN02028674 IPI:IPI00591823
Ensembl:ENSGALT00000006297 ArrayExpress:F1NYH4 Uniprot:F1NYH4
Length = 291
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 88/265 (33%), Positives = 145/265 (54%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 11 ICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 70
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL SGL F K ++G
Sbjct: 71 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLASSGLQFQKHEEEG 129
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +++KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 130 IDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 189
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C A L+++R G H AGSDSLLT F MK +
Sbjct: 190 SIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 246
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 247 DTIDDAKYCGRLYGLGTGVAQKQNE 271
>ZFIN|ZDB-GENE-061013-29 [details] [associations]
symbol:cnot7 "CCR4-NOT transcription complex,
subunit 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
ZFIN:ZDB-GENE-061013-29 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003676 SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 CTD:29883 GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS EMBL:BC124650 IPI:IPI00487012
RefSeq:NP_001070723.1 UniGene:Dr.79902 ProteinModelPortal:Q08BM8
SMR:Q08BM8 STRING:Q08BM8 Ensembl:ENSDART00000092953 GeneID:768119
KEGG:dre:768119 InParanoid:Q08BM8 OMA:VDFFEIL NextBio:20918441
ArrayExpress:Q08BM8 Bgee:Q08BM8 Uniprot:Q08BM8
Length = 286
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 88/258 (34%), Positives = 138/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N E M+ + ++ FN +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI +N LP F + LFF
Sbjct: 130 GIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A L ++R G H AGSDSLLT F +M+ +
Sbjct: 190 PIIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246
Query: 240 --ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 247 EDHIDDAKYCGHLYGLGS 264
>FB|FBgn0036239 [details] [associations]
symbol:Pop2 "Pop2" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
EMBL:AE014296 GO:GO:0003676 GO:GO:0048666 GO:GO:0007517
SUPFAM:SSF53098 GO:GO:0030014 KO:K12581 GO:GO:0004535 GO:GO:0000289
OMA:SIMIREV GeneTree:ENSGT00390000000080 RefSeq:NP_001163429.1
UniGene:Dm.6800 ProteinModelPortal:E1JHY7 SMR:E1JHY7
EnsemblMetazoa:FBtr0300272 GeneID:39366 KEGG:dme:Dmel_CG5684
CTD:39366 FlyBase:FBgn0036239 PhylomeDB:E1JHY7 GenomeRNAi:39366
NextBio:813298 Bgee:E1JHY7 Uniprot:E1JHY7
Length = 357
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 92/266 (34%), Positives = 141/266 (53%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYND--LKFNVDC 64
I +VW +N E R + K++ ++ +++DTEFPG + + Y+ L+ NVD
Sbjct: 21 IRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDL 80
Query: 65 THLIQLGITLSDKEGKI--SY-TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T D +GK Y T++FNF F+L +D++A DSI LL++SG+ F K +DG
Sbjct: 81 LRIIQLGLTFMDDDGKTPPGYSTWQFNFK-FNLSEDMYAQDSIDLLQNSGIQFKKHEEDG 139
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + EN+KW+ FH YD YL+K+ T+ LPP F + ++F
Sbjct: 140 IDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFP 199
Query: 182 SVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMK----- 236
++FDIK + C A L ++R G H AGSD+LLT F +M+
Sbjct: 200 NIFDIKYLMKSCKNLKGGLQEV---ADQLELRRVGPQHQAGSDALLTGMAFFKMREVQHT 256
Query: 237 NRYELEESAFDG-FLYGMDSRIERKP 261
N + + A D F Y ++ + KP
Sbjct: 257 NDFHITPVAHDVLFRYLLEHTMNLKP 282
>POMBASE|SPCC18.06c [details] [associations]
symbol:caf1 "CCR4-Not complex CAF1 family ribonuclease
subunit Caf1" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IDA]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
PomBase:SPCC18.06c GO:GO:0005829 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0071276 GO:GO:0071585
GO:GO:0003729 GO:GO:0006357 GO:GO:0006368 SUPFAM:SSF53098
eggNOG:COG5228 HOGENOM:HOG000173077 GO:GO:0004535 GO:GO:0000289
PIR:T41149 RefSeq:NP_588385.2 PDB:2P51 PDB:3G0Z PDB:3G10
PDBsum:2P51 PDBsum:3G0Z PDBsum:3G10 STRING:O74856
EnsemblFungi:SPCC18.06c.1 GeneID:2539041 OrthoDB:EOG4MGWHH
EvolutionaryTrace:O74856 NextBio:20800215 GO:GO:0030015
Uniprot:O74856
Length = 335
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 92/259 (35%), Positives = 140/259 (54%)
Query: 4 VSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYN--DLKFN 61
+S I +VW N + M + L+ + V+S+DTEFPG + + + Y+ L+ N
Sbjct: 22 ISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRAN 81
Query: 62 VDCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIR 118
VD +IQ+G+ LSD+EG + T++FNF+ F+L+ D++A +SI+LL SG+DF K +
Sbjct: 82 VDSLKIIQIGLALSDEEGNAPVEACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQ 140
Query: 119 KDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAAL 178
+ GI FA + +E + W+TFH YD AYL+K T LP E F + +
Sbjct: 141 EVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCI 200
Query: 179 FFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNR 238
+F +DIK + A L + R G H AGSD+LLTA +F E+++R
Sbjct: 201 YFPKNYDIKYIM---KSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 257
Query: 239 YELEESAFDGFLYGMDSRI 257
Y FDG +DSR+
Sbjct: 258 Y------FDG---SIDSRM 267
>TAIR|locus:2200532 [details] [associations]
symbol:AT1G15920 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009451
"RNA modification" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 EMBL:AC010924 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 EMBL:AY080754 EMBL:AY114040 EMBL:AK317215
IPI:IPI00528580 PIR:F86293 RefSeq:NP_173044.1 RefSeq:NP_973838.1
UniGene:At.41908 HSSP:P39008 ProteinModelPortal:Q9S9P2 SMR:Q9S9P2
IntAct:Q9S9P2 DNASU:838162 EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2 GeneID:838162 KEGG:ath:AT1G15920
TAIR:At1g15920 InParanoid:Q9S9P2 OMA:ANVNMLK PhylomeDB:Q9S9P2
ProtClustDB:CLSN2679525 Genevestigator:Q9S9P2 Uniprot:Q9S9P2
Length = 286
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 95/270 (35%), Positives = 143/270 (52%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT----PRNAP-AVE---SYND 57
+I VW N E M +++ ++ F +++DTEFPG + T P P ++ +Y+
Sbjct: 15 EIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDT 74
Query: 58 LKFNVDCTHLIQLGITLSDKEGKI-------SYTFEFNFSDFDLKKDLHAGDSIQLLKDS 110
LK NV+ LIQLG+TLSD++G + ++FNF +F++ D+ A DSI+LL+ S
Sbjct: 75 LKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKS 134
Query: 111 GLDFDKIRKDGIPRCVFAPRFLEVLSKH----RENLKWVTFHGLYDVAYLVKIFTNDALP 166
+D +K + G+ A RF E+L + + WVTFH YD YL+K+ + LP
Sbjct: 135 AIDLEKNNECGVD----AKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELP 190
Query: 167 PTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSL 226
F FF V+DIK + G+C A +L VKR G +H AGSDSL
Sbjct: 191 EEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKI---AELLGVKRVGISHQAGSDSL 247
Query: 227 LTAAVFAEMKNRYELEESA-FDGFLYGMDS 255
LT F +MK + + GFL+G+D+
Sbjct: 248 LTLRTFIKMKEFFFTGSLLKYSGFLFGLDN 277
>UNIPROTKB|Q5ZJV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=ISS] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:AJ720325 IPI:IPI00570620
RefSeq:NP_001006454.1 UniGene:Gga.4905 ProteinModelPortal:Q5ZJV9
SMR:Q5ZJV9 STRING:Q5ZJV9 Ensembl:ENSGALT00000022198 GeneID:422733
KEGG:gga:422733 InParanoid:Q5ZJV9 NextBio:20825324 Uniprot:Q5ZJV9
Length = 285
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 87/258 (33%), Positives = 139/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A L ++R G H AGSDSLLT F +M+ +
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246
Query: 240 --ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 247 EDHIDDAKYCGHLYGLGS 264
>UNIPROTKB|Q3ZC01 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
HSSP:P39008 OMA:FEDNIDH EMBL:BC103000 IPI:IPI00704902
RefSeq:NP_001029484.1 UniGene:Bt.49477 ProteinModelPortal:Q3ZC01
SMR:Q3ZC01 STRING:Q3ZC01 Ensembl:ENSBTAT00000024009 GeneID:508055
KEGG:bta:508055 CTD:29883 GeneTree:ENSGT00390000000080
HOVERGEN:HBG051044 InParanoid:Q3ZC01 OrthoDB:EOG4MKNGS
NextBio:20868336 Uniprot:Q3ZC01
Length = 285
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 87/258 (33%), Positives = 139/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A L ++R G H AGSDSLLT F +M+ +
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246
Query: 240 --ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 247 EDHIDDAKYCGHLYGLGS 264
>UNIPROTKB|E2RMU2 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014 KO:K12581
OMA:FEDNIDH CTD:29883 GeneTree:ENSGT00390000000080
EMBL:AAEX03010466 RefSeq:XP_540010.2 ProteinModelPortal:E2RMU2
SMR:E2RMU2 Ensembl:ENSCAFT00000011068 GeneID:482895 KEGG:cfa:482895
NextBio:20857389 Uniprot:E2RMU2
Length = 285
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 87/258 (33%), Positives = 139/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A L ++R G H AGSDSLLT F +M+ +
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246
Query: 240 --ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 247 EDHIDDAKYCGHLYGLGS 264
>UNIPROTKB|Q9UIV1 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA;NAS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IMP]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=TAS]
[GO:0004871 "signal transducer activity" evidence=TAS] [GO:0005975
"carbohydrate metabolic process" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005829 GO:GO:0005634
EMBL:CH471080 GO:GO:0005975 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0003676 GO:GO:0004871 SUPFAM:SSF53098
GO:GO:0000932 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 OMA:FEDNIDH GO:GO:0000289 PDB:4GMJ PDBsum:4GMJ CTD:29883
HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS EMBL:L46722 EMBL:AF086915
EMBL:AK021808 EMBL:AK023466 EMBL:AC091050 EMBL:BC060852
EMBL:BC070187 IPI:IPI00006552 RefSeq:NP_037486.2 RefSeq:NP_473367.2
UniGene:Hs.645009 UniGene:Hs.729775 PDB:2D5R PDBsum:2D5R
ProteinModelPortal:Q9UIV1 SMR:Q9UIV1 DIP:DIP-41902N IntAct:Q9UIV1
STRING:Q9UIV1 PhosphoSite:Q9UIV1 DMDM:41713629 PaxDb:Q9UIV1
PRIDE:Q9UIV1 DNASU:29883 Ensembl:ENST00000361272
Ensembl:ENST00000523917 GeneID:29883 KEGG:hsa:29883 UCSC:uc003wxf.1
GeneCards:GC08M017086 HGNC:HGNC:14101 MIM:604913 neXtProt:NX_Q9UIV1
PharmGKB:PA26678 InParanoid:Q9UIV1 PhylomeDB:Q9UIV1 ChiTaRS:CNOT7
EvolutionaryTrace:Q9UIV1 GenomeRNAi:29883 NextBio:52417
ArrayExpress:Q9UIV1 Bgee:Q9UIV1 CleanEx:HS_CNOT7
Genevestigator:Q9UIV1 GermOnline:ENSG00000198791 Uniprot:Q9UIV1
Length = 285
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 87/258 (33%), Positives = 139/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A L ++R G H AGSDSLLT F +M+ +
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246
Query: 240 --ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 247 EDHIDDAKYCGHLYGLGS 264
>MGI|MGI:1298230 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10090 "Mus musculus" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI;IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=ISO;IPI] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IGI]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISO] [GO:1900153 "positive regulation of
nuclear-transcribed mRNA catabolic process, deadenylation-dependent
decay" evidence=ISO] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 MGI:MGI:1298230 GO:GO:0005634 GO:GO:0045944
GO:GO:0006351 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0033962 GO:GO:0030014 eggNOG:COG5228 HOGENOM:HOG000173077
KO:K12581 GO:GO:0004535 OMA:FEDNIDH GO:GO:0000289 CTD:29883
GeneTree:ENSGT00390000000080 HOVERGEN:HBG051044 OrthoDB:EOG4MKNGS
ChiTaRS:CNOT7 EMBL:U21855 EMBL:BC006021 IPI:IPI00121265
RefSeq:NP_001258471.1 RefSeq:NP_035265.1 UniGene:Mm.272551
ProteinModelPortal:Q60809 SMR:Q60809 DIP:DIP-46843N IntAct:Q60809
MINT:MINT-4597058 STRING:Q60809 PhosphoSite:Q60809 PaxDb:Q60809
PRIDE:Q60809 DNASU:18983 Ensembl:ENSMUST00000034012
Ensembl:ENSMUST00000132032 Ensembl:ENSMUST00000149992 GeneID:18983
KEGG:mmu:18983 InParanoid:Q60809 NextBio:295350 Bgee:Q60809
CleanEx:MM_CNOT7 Genevestigator:Q60809
GermOnline:ENSMUSG00000031601 GO:GO:0000290 Uniprot:Q60809
Length = 285
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 87/258 (33%), Positives = 139/258 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY- 239
++D+K + C A L ++R G H AGSDSLLT F +M+ +
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246
Query: 240 --ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 247 EDHIDDAKYCGHLYGLGS 264
>TAIR|locus:2183765 [details] [associations]
symbol:AT5G10960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0000902 "cell morphogenesis" evidence=RCA] [GO:0007030 "Golgi
organization" evidence=RCA] [GO:0007033 "vacuole organization"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016049 "cell growth"
evidence=RCA] [GO:0048193 "Golgi vesicle transport" evidence=RCA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581
GO:GO:0004535 HSSP:P39008 EMBL:AL365234 EMBL:AY050855 EMBL:AY142489
IPI:IPI00525656 PIR:T50805 RefSeq:NP_196657.1 UniGene:At.25437
ProteinModelPortal:Q9LEU4 SMR:Q9LEU4 STRING:Q9LEU4 PaxDb:Q9LEU4
PRIDE:Q9LEU4 DNASU:830963 EnsemblPlants:AT5G10960.1 GeneID:830963
KEGG:ath:AT5G10960 TAIR:At5g10960 InParanoid:Q9LEU4 OMA:SIMIREV
PhylomeDB:Q9LEU4 ProtClustDB:CLSN2916341 Genevestigator:Q9LEU4
Uniprot:Q9LEU4
Length = 277
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 85/257 (33%), Positives = 131/257 (50%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVE--SYNDLKFNVDC 64
I VW N + ++++ F+ +++DTEFPG + +Y LK NVD
Sbjct: 12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDL 71
Query: 65 THLIQLGITLSDKEGKISYT-------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKI 117
LIQ+G+T SD+ G + ++FNF +F++ +D++A +SI+LL+ G+DF K
Sbjct: 72 LKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131
Query: 118 RKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAA 177
+ GI F + + + WVTFHG YD YLVK+ T LP F +
Sbjct: 132 IEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLY 191
Query: 178 LFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKN 237
++F +V+DIK + +C A ++ V+R G H AGSDSLLT F ++K
Sbjct: 192 VYFPTVYDIKHLMTFCNGLFGGLNRL---AELMGVERVGICHQAGSDSLLTLGSFRKLKE 248
Query: 238 RY-ELEESAFDGFLYGM 253
RY + G LYG+
Sbjct: 249 RYFPGSTEKYTGVLYGL 265
>UNIPROTKB|F1SET4 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
OMA:FEDNIDH GeneTree:ENSGT00390000000080 EMBL:CU467504
ProteinModelPortal:F1SET4 SMR:F1SET4 Ensembl:ENSSSCT00000007651
Uniprot:F1SET4
Length = 246
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 82/238 (34%), Positives = 127/238 (53%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNR 238
++D+K + C A L ++R G H AGSDSLLT + E N+
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEV---AEQLELERIGPQHQAGSDSLLTGNAYEEEANK 244
>UNIPROTKB|F2Z5J3 [details] [associations]
symbol:CNOT7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0045944
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0030014
GeneTree:ENSGT00390000000080 EMBL:CU467504
Ensembl:ENSSSCT00000007648 Uniprot:F2Z5J3
Length = 248
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 67/193 (34%), Positives = 108/193 (55%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYC 193
++D+K + C
Sbjct: 190 PVIYDVKYLMKSC 202
>RGD|1305313 [details] [associations]
symbol:Cnot7 "CCR4-NOT transcription complex, subunit 7"
species:10116 "Rattus norvegicus" [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISO]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 RGD:1305313
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00764402
ProteinModelPortal:D3ZE83 SMR:D3ZE83 Ensembl:ENSRNOT00000059020
ArrayExpress:D3ZE83 Uniprot:D3ZE83
Length = 248
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 67/193 (34%), Positives = 108/193 (55%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E +KW++FH YD YL+KI TN LP F + LFF
Sbjct: 130 GIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189
Query: 181 QSVFDIKVVAGYC 193
++D+K + C
Sbjct: 190 PVIYDVKYLMKSC 202
>UNIPROTKB|H0YAV9 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC091050 HGNC:HGNC:14101
ChiTaRS:CNOT7 Ensembl:ENST00000519918 Uniprot:H0YAV9
Length = 208
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 63/180 (35%), Positives = 102/180 (56%)
Query: 19 MRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVDCTHLIQLGITLSD 76
M+ + +++ +N +++DTEFPG + + A Y L+ NVD +IQLG+T +
Sbjct: 4 MKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN 63
Query: 77 KEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLE 133
++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++GI FA +
Sbjct: 64 EQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMT 122
Query: 134 VLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYC 193
E +KW++FH YD YL+KI TN LP F + LFF ++D+K + C
Sbjct: 123 SGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSC 182
>WB|WBGene00000369 [details] [associations]
symbol:ccf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0051301 "cell division" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0009792 GO:GO:0006915 GO:GO:0002119 GO:GO:0006355
GO:GO:0010171 GO:GO:0006351 GO:GO:0051729 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 SUPFAM:SSF53098 GO:GO:0000932
eggNOG:COG5228 HOGENOM:HOG000173077 KO:K12581 GO:GO:0043186
GeneTree:ENSGT00390000000080 EMBL:U21854 EMBL:AL132860
RefSeq:NP_499553.1 UniGene:Cel.17350 ProteinModelPortal:Q17345
SMR:Q17345 DIP:DIP-29083N MINT:MINT-1066027 STRING:Q17345
PaxDb:Q17345 EnsemblMetazoa:Y56A3A.20.1 EnsemblMetazoa:Y56A3A.20.2
GeneID:176625 KEGG:cel:CELE_Y56A3A.20 UCSC:Y56A3A.20.1 CTD:176625
WormBase:Y56A3A.20 InParanoid:Q17345 OMA:QSINHID NextBio:893354
Uniprot:Q17345
Length = 310
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 72/241 (29%), Positives = 119/241 (49%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYN--DLKFNVD 63
KI NV+ N E + + + +++DTEFPG + + E +N + NV+
Sbjct: 22 KIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNVN 81
Query: 64 CTHLIQLGITLSDKEGKISYT---FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
LIQ+G + + +G++ T ++FNF+ F +D+ + +S+++L+ +G+DF ++ +
Sbjct: 82 MLKLIQVGFAMVNDKGELPPTGDVWQFNFN-FSFAEDMFSHESVEMLRQAGIDFTLLQNN 140
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GIP VF + W+TF YD YL+K T LP F F
Sbjct: 141 GIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLF 200
Query: 181 QSVFDIKVV--AGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNR 238
+ FDIK++ C + L+VKR G H AGSD+LLTAA F ++K +
Sbjct: 201 PTSFDIKILLRTPNCASAKLKGGLQEVADQ-LDVKRQGVRHQAGSDALLTAATFFKIKKQ 259
Query: 239 Y 239
+
Sbjct: 260 F 260
>UNIPROTKB|B0AZS3 [details] [associations]
symbol:CNOT8 "cDNA FLJ50580, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
OrthoDB:EOG4MKNGS UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK315864 EMBL:AK297381
EMBL:AK316221 EMBL:AK316269 IPI:IPI00976721 SMR:B0AZS3
STRING:B0AZS3 Ensembl:ENST00000520671 Ensembl:ENST00000521450
Ensembl:ENST00000521583 Ensembl:ENST00000523698 Uniprot:B0AZS3
Length = 186
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 57/169 (33%), Positives = 89/169 (52%)
Query: 98 LHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLV 157
+++ DSI LL +SGL F K ++GI FA + +N+KW++FH YD Y+V
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 158 KIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGG 217
K+ T+ LP F + LFF S++D+K + C A L+++R G
Sbjct: 61 KLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRIGR 117
Query: 218 AHHAGSDSLLTAAVFAEMKNRY---ELEESAFDGFLYGMDSRIERKPAE 263
H AGSDSLLT F MK + ++++ + G LYG+ + + +K E
Sbjct: 118 QHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTGVAQKQNE 166
>SGD|S000005335 [details] [associations]
symbol:POP2 "RNase of the DEDD superfamily" species:4932
"Saccharomyces cerevisiae" [GO:0043332 "mating projection tip"
evidence=IDA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;IDA;IMP]
[GO:0030015 "CCR4-NOT core complex" evidence=IPI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IPI] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IMP;IDA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 SGD:S000005335 GO:GO:0005634
GO:GO:0043332 GO:GO:0046872 EMBL:BK006947 GO:GO:0003723
GO:GO:0006368 SUPFAM:SSF53098 GO:GO:0000932 GO:GO:0032968
EMBL:M88607 eggNOG:COG5228 KO:K12581 GO:GO:0004535 GO:GO:0000289
OrthoDB:EOG4MGWHH GO:GO:0030015 PDB:4B8C PDBsum:4B8C GO:GO:0000175
GeneTree:ENSGT00390000000080 RefSeq:NP_014457.3 GeneID:855796
KEGG:sce:YNR059W PDB:4B8A PDBsum:4B8A EMBL:D12807 EMBL:D12808
EMBL:Z71667 EMBL:AY692792 PIR:S63383 RefSeq:NP_014450.3 PDB:1UOC
PDBsum:1UOC ProteinModelPortal:P39008 SMR:P39008 DIP:DIP-1957N
IntAct:P39008 MINT:MINT-405477 STRING:P39008 PaxDb:P39008
EnsemblFungi:YNR052C GeneID:855788 KEGG:sce:YNR052C CYGD:YNR052c
HOGENOM:HOG000057134 OMA:PRFSIFT EvolutionaryTrace:P39008
NextBio:980271 Genevestigator:P39008 GermOnline:YNR052C
Uniprot:P39008
Length = 433
Score = 242 (90.2 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 58/189 (30%), Positives = 103/189 (54%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
+ +VW N + +L++ +N +SI TEF G L R V+ Y ++ NVD
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219
Query: 65 THLIQLGITLSDKEGKIS----YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+ IQLG++LSD G T++FNF +FD KK++ + +S++LL+ SG++F+K
Sbjct: 220 LNPIQLGLSLSDANGNKPDNGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENL 278
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI F+ ++ +++ W+T+H YD+ +L+ I ND++P E F +
Sbjct: 279 GIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 338
Query: 181 QSVFDIKVV 189
+ +D+ +V
Sbjct: 339 PNFYDLNLV 347
>ASPGD|ASPL0000066297 [details] [associations]
symbol:caf1 species:162425 "Emericella nidulans"
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0071276 "cellular response to cadmium
ion" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 EMBL:BN001304
SUPFAM:SSF53098 EnsemblFungi:CADANIAT00000746 OMA:RIRDVWK
Uniprot:C8VBX7
Length = 466
Score = 174 (66.3 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 84 TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLK 143
T++FNF F L++D++A +S +L +G+DF K+GI F + +++
Sbjct: 237 TWQFNFR-FSLEEDMYAQESTAMLAKAGIDFATHEKNGIDPLEFGALLISSGLVLLDDVH 295
Query: 144 WVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIK 187
W++FH YD YL+KI ALP E F + +FF S++DIK
Sbjct: 296 WISFHSGYDFGYLMKIMLCQALPENEEEFHKLLNIFFPSLYDIK 339
Score = 113 (44.8 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 3 VVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNA---PAVESYNDLK 59
V ++I +VW N M L L+ + +S+DTEFPG + P + A Y L+
Sbjct: 134 VKTRIRDVWKHNLAQEMAVLRHLVERYPYISMDTEFPGIVAR-PIGSFTNKADYHYQTLR 192
Query: 60 FNVDCTHLIQLGITLSDKEGKI 81
NVD +IQLGITL +G++
Sbjct: 193 CNVDLLKMIQLGITLFSPKGEV 214
Score = 96 (38.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 45/152 (29%), Positives = 71/152 (46%)
Query: 110 SGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFT-NDALPPT 168
SG DF + K I C P E K L + F LYD+ YL+K T N A+ +
Sbjct: 301 SGYDFGYLMK--IMLCQALPENEEEFHK----LLNIFFPSLYDIKYLMKHATRNQAVNDS 354
Query: 169 AEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRHGGAHHAGSDSLLT 228
+ AA Q + ++ +G A L VKR G AH AGSDSL+T
Sbjct: 355 P--LTPAAA---QIISNLGQKSGL-----------QDIADELGVKRVGIAHQAGSDSLVT 398
Query: 229 AAVFAEMKNRY---ELEESAFDGFLYGMDSRI 257
+F +M+ ++++S + G ++G++ ++
Sbjct: 399 GEIFWKMRQLVFNGKIDDSKYSGQIWGLNGQM 430
>UNIPROTKB|E5RGE4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00981605
ProteinModelPortal:E5RGE4 SMR:E5RGE4 Ensembl:ENST00000520472
ArrayExpress:E5RGE4 Bgee:E5RGE4 Uniprot:E5RGE4
Length = 133
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 44/121 (36%), Positives = 75/121 (61%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 I 122
I
Sbjct: 131 I 131
>UNIPROTKB|E5RGH2 [details] [associations]
symbol:CNOT7 "CCR4-NOT transcription complex subunit 7"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0045944 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0030014 EMBL:AC091050 HGNC:HGNC:14101 ChiTaRS:CNOT7
IPI:IPI01010295 ProteinModelPortal:E5RGH2 SMR:E5RGH2
Ensembl:ENST00000524358 UCSC:uc003wxi.1 ArrayExpress:E5RGH2
Bgee:E5RGH2 Uniprot:E5RGH2
Length = 147
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNT--PRNAPAVESYNDLKFNVD 63
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NVD
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD 70
Query: 64 CTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K ++
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEE 129
Query: 121 GIPRCVFA 128
GI FA
Sbjct: 130 GIETQYFA 137
>UNIPROTKB|G4MUF8 [details] [associations]
symbol:MGG_01666 "CCR4-NOT transcription complex subunit 7"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CM001232 KO:K12581
RefSeq:XP_003714652.1 ProteinModelPortal:G4MUF8
EnsemblFungi:MGG_01666T0 GeneID:2679608 KEGG:mgr:MGG_01666
Uniprot:G4MUF8
Length = 521
Score = 200 (75.5 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 41/127 (32%), Positives = 69/127 (54%)
Query: 61 NVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+ D L+ S ++G + YT++FNF F LK D+++ I+ L +G+DF + +D
Sbjct: 209 STDVAELLGAAGRRSAQQGPLPYTWQFNFQ-FSLKDDMYSQSQIESLLQAGIDFVALERD 267
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI FA + E++ W++FH YD YL+K+ + LP + F + LFF
Sbjct: 268 GINPKEFASLMISSGMVCDESISWISFHSAYDFGYLLKLLWCNMLPEDQDEFKQLLRLFF 327
Query: 181 QSVFDIK 187
+V+D+K
Sbjct: 328 PNVYDVK 334
Score = 104 (41.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYND--LKFNVD 63
+I VW N M L L+ ++ +S+DT FPG + + + Y+ L+ NVD
Sbjct: 125 RIREVWKHNLHEEMAVLRDLIERYSYISMDTTFPGVVCRPMGSFRSKRDYHYQCLRANVD 184
Query: 64 CTHLIQLGITLSDKEGK 80
++IQ+GITL +++G+
Sbjct: 185 MLNVIQIGITLFNEDGE 201
Score = 96 (38.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 38/126 (30%), Positives = 55/126 (43%)
Query: 147 FHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSV--FDIKVVAGYCXXXXXXXXXXX 204
F +YDV Y +K + P A F G+ ++ FD K
Sbjct: 327 FPNVYDVKYFMK---HQMKPLNAIGFQGIDGAIVDALQKFDHK-------------STLE 370
Query: 205 XXARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY---ELEESAFDGFLYGMDSRIERKP 261
A +L VKR G AH AGSDSLLT F +M+ + +L E G ++G++ + +P
Sbjct: 371 TLAEVLKVKRTGPAHQAGSDSLLTGRAFFQMREKVFGGKLPEDIL-GQVWGLE---DSEP 426
Query: 262 AEIMML 267
M L
Sbjct: 427 GPSMSL 432
>CGD|CAL0001422 [details] [associations]
symbol:POP2 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0000289 "nuclear-transcribed
mRNA poly(A) tail shortening" evidence=IEA;ISM] [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0009272 "fungal-type
cell wall biogenesis" evidence=IMP] [GO:0055091 "phospholipid
homeostasis" evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0043332 "mating
projection tip" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422
GO:GO:0005634 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0042493 GO:GO:0003676 GO:GO:0055091 GO:GO:0009267
GO:GO:0009272 SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046
EMBL:AACQ01000047 eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1
RefSeq:XP_718072.1 ProteinModelPortal:Q5A8L5 STRING:Q5A8L5
GeneID:3640301 GeneID:3640332 KEGG:cal:CaO19.13156
KEGG:cal:CaO19.5734 Uniprot:Q5A8L5
Length = 492
Score = 188 (71.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 56/195 (28%), Positives = 94/195 (48%)
Query: 7 ILNVWCEN----FEIVMRFL-DKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYN--DLK 59
I VW N F+ + F+ DK F ++I E PG + + Y+ L+
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVF--IAIHQEIPGIVARPVGTFKSSSDYHFQTLR 211
Query: 60 FNVDCTHLIQLGITLS--DKEGKIS--YTFEFNFSDFDLKKDLHAGDSIQLL-KDSGLDF 114
N D +LIQL + + K IS ++FNF +DL K+++ + + +L + S ++F
Sbjct: 212 ANSDLLNLIQLSLCVIKISKNETISTPVIWQFNFL-YDLTKEMYNEEHLAMLAQTSQINF 270
Query: 115 DKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSG 174
+ GIP FA +E +N+ WV+FH YD+ + V + +ND LP F
Sbjct: 271 QLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFYW 330
Query: 175 VAALFFQSVFDIKVV 189
A +F + +D+K +
Sbjct: 331 WCAKYFPNFYDLKYI 345
>UNIPROTKB|Q5A8L5 [details] [associations]
symbol:POP2 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Pop2p" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0042493 "response to drug" evidence=IMP] [GO:0055091
"phospholipid homeostasis" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 CGD:CAL0001422 GO:GO:0005634
GO:GO:0071216 GO:GO:0036180 GO:GO:0009405 GO:GO:0042493
GO:GO:0003676 GO:GO:0055091 GO:GO:0009267 GO:GO:0009272
SUPFAM:SSF53098 GO:GO:0036170 EMBL:AACQ01000046 EMBL:AACQ01000047
eggNOG:COG5228 KO:K12581 RefSeq:XP_718005.1 RefSeq:XP_718072.1
ProteinModelPortal:Q5A8L5 STRING:Q5A8L5 GeneID:3640301
GeneID:3640332 KEGG:cal:CaO19.13156 KEGG:cal:CaO19.5734
Uniprot:Q5A8L5
Length = 492
Score = 188 (71.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 56/195 (28%), Positives = 94/195 (48%)
Query: 7 ILNVWCEN----FEIVMRFL-DKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYN--DLK 59
I VW N F+ + F+ DK F ++I E PG + + Y+ L+
Sbjct: 154 IKEVWSSNLEHEFQALRTFINDKTSKVF--IAIHQEIPGIVARPVGTFKSSSDYHFQTLR 211
Query: 60 FNVDCTHLIQLGITLS--DKEGKIS--YTFEFNFSDFDLKKDLHAGDSIQLL-KDSGLDF 114
N D +LIQL + + K IS ++FNF +DL K+++ + + +L + S ++F
Sbjct: 212 ANSDLLNLIQLSLCVIKISKNETISTPVIWQFNFL-YDLTKEMYNEEHLAMLAQTSQINF 270
Query: 115 DKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSG 174
+ GIP FA +E +N+ WV+FH YD+ + V + +ND LP F
Sbjct: 271 QLLSTHGIPHFEFAELMIESGLILDDNINWVSFHAGYDLGFFVSLLSNDDLPVDEPDFYW 330
Query: 175 VAALFFQSVFDIKVV 189
A +F + +D+K +
Sbjct: 331 WCAKYFPNFYDLKYI 345
>UNIPROTKB|E5RJC5 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984192
ProteinModelPortal:E5RJC5 SMR:E5RJC5 Ensembl:ENST00000519211
ArrayExpress:E5RJC5 Bgee:E5RJC5 Uniprot:E5RJC5
Length = 119
Score = 161 (61.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/109 (34%), Positives = 67/109 (61%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDS 110
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +S
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANS 119
>UNIPROTKB|E5RK92 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00979467
ProteinModelPortal:E5RK92 SMR:E5RK92 Ensembl:ENST00000517568
ArrayExpress:E5RK92 Bgee:E5RK92 Uniprot:E5RK92
Length = 118
Score = 157 (60.3 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 37/106 (34%), Positives = 65/106 (61%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLL 107
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLL 116
>UNIPROTKB|E5RIL2 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00982993
ProteinModelPortal:E5RIL2 SMR:E5RIL2 Ensembl:ENST00000518775
ArrayExpress:E5RIL2 Bgee:E5RIL2 Uniprot:E5RIL2
Length = 225
Score = 159 (61.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 151 YDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARIL 210
YD Y+VK+ T+ LP F + LFF S++D+K + C A L
Sbjct: 106 YDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEV---ADQL 162
Query: 211 NVKRHGGAHHAGSDSLLTAAVFAEMKNRY---ELEESAFDGFLYGMDSRIERKPAE 263
+++R G H AGSDSLLT F MK + ++++ + G LYG+ + + +K E
Sbjct: 163 DLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTGVAQKQNE 218
Score = 146 (56.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 64/202 (31%), Positives = 101/202 (50%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L G ++LL DS L ++
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLT-GYDFGYMVKLLTDSRLPEEEHEFFH 129
Query: 122 IPRCVFAPRFLEV--LSKHRENLKWVTFHGLYDVAY---LVKIFT-----NDALPPTAEA 171
I +F P +V L K +NLK GL +VA L +I +D+L T A
Sbjct: 130 ILN-LFFPSIYDVKYLMKSCKNLKG----GLQEVADQLDLQRIGRQHQAGSDSLL-TGMA 183
Query: 172 FSGVAALFFQSVFDIKVVAGYC 193
F + LFF+ D A YC
Sbjct: 184 FFRMKELFFEDSIDD---AKYC 202
>UNIPROTKB|E5RIU0 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00978233
ProteinModelPortal:E5RIU0 SMR:E5RIU0 Ensembl:ENST00000519903
ArrayExpress:E5RIU0 Bgee:E5RIU0 Uniprot:E5RIU0
Length = 85
Score = 148 (57.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 98 LHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLV 157
+++ DSI LL +SGL F K ++GI FA + +N+KW++FH YD Y+V
Sbjct: 1 MYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMV 60
Query: 158 KIFTNDALPPTAEAFSGVAALFFQS 182
K+ T+ LP F + LFF S
Sbjct: 61 KLLTDSRLPEEEHEFFHILNLFFPS 85
>UNIPROTKB|B7Z8R1 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HOGENOM:HOG000173077
HOVERGEN:HBG051044 UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 EMBL:AK303775 IPI:IPI00980211
SMR:B7Z8R1 Ensembl:ENST00000519404 UCSC:uc011ddj.2 Uniprot:B7Z8R1
Length = 238
Score = 159 (61.0 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 151 YDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARIL 210
YD Y+VK+ T+ LP F + LFF S++D+K + C A L
Sbjct: 106 YDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEV---ADQL 162
Query: 211 NVKRHGGAHHAGSDSLLTAAVFAEMKNRY---ELEESAFDGFLYGMDSRIERKPAE 263
+++R G H AGSDSLLT F MK + ++++ + G LYG+ + + +K E
Sbjct: 163 DLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTGVAQKQNE 218
Score = 146 (56.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 64/202 (31%), Positives = 101/202 (50%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L G ++LL DS L ++
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLT-GYDFGYMVKLLTDSRLPEEEHEFFH 129
Query: 122 IPRCVFAPRFLEV--LSKHRENLKWVTFHGLYDVAY---LVKIFT-----NDALPPTAEA 171
I +F P +V L K +NLK GL +VA L +I +D+L T A
Sbjct: 130 ILN-LFFPSIYDVKYLMKSCKNLKG----GLQEVADQLDLQRIGRQHQAGSDSLL-TGMA 183
Query: 172 FSGVAALFFQSVFDIKVVAGYC 193
F + LFF+ D A YC
Sbjct: 184 FFRMKELFFEDSIDD---AKYC 202
>UNIPROTKB|B7Z9U0 [details] [associations]
symbol:CNOT8 "cDNA, FLJ78954, highly similar to CCR4-NOT
transcription complex subunit 8" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 HOGENOM:HOG000173077 HOVERGEN:HBG051044
UniGene:Hs.26703 HGNC:HGNC:9207 ChiTaRS:CNOT8 PANTHER:PTHR10797:SF1
EMBL:AC112169 EMBL:AK316055 IPI:IPI00982113 SMR:B7Z9U0
STRING:B7Z9U0 Ensembl:ENST00000524105 UCSC:uc011ddh.2
Uniprot:B7Z9U0
Length = 128
Score = 140 (54.3 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 35/111 (31%), Positives = 56/111 (50%)
Query: 156 LVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCXXXXXXXXXXXXXARILNVKRH 215
+VK+ T+ LP F + LFF S++D+K + C A L+++R
Sbjct: 1 MVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEV---ADQLDLQRI 57
Query: 216 GGAHHAGSDSLLTAAVFAEMKNRY---ELEESAFDGFLYGMDSRIERKPAE 263
G H AGSDSLLT F MK + ++++ + G LYG+ + + +K E
Sbjct: 58 GRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTGVAQKQNE 108
>UNIPROTKB|E5RHP3 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00977360
ProteinModelPortal:E5RHP3 SMR:E5RHP3 Ensembl:ENST00000522458
ArrayExpress:E5RHP3 Bgee:E5RHP3 Uniprot:E5RHP3
Length = 121
Score = 136 (52.9 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 37/111 (33%), Positives = 63/111 (56%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGL 112
+IQLG+T ++++G+ T++FNF F+L G ++LL DS L
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLT-GYDFGYMVKLLTDSRL 120
>UNIPROTKB|E5RHL9 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00976222
ProteinModelPortal:E5RHL9 SMR:E5RHL9 Ensembl:ENST00000522644
ArrayExpress:E5RHL9 Bgee:E5RHL9 Uniprot:E5RHL9
Length = 117
Score = 127 (49.8 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 33/98 (33%), Positives = 58/98 (59%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDL--KKD 97
+IQLG+T ++++G+ T++FNF F+L KK+
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTYKKE 108
>UNIPROTKB|E5RFJ4 [details] [associations]
symbol:CNOT8 "CCR4-NOT transcription complex subunit 8"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR027212 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 HGNC:HGNC:9207 ChiTaRS:CNOT8
PANTHER:PTHR10797:SF1 EMBL:AC112169 IPI:IPI00984764
ProteinModelPortal:E5RFJ4 SMR:E5RFJ4 Ensembl:ENST00000519394
ArrayExpress:E5RFJ4 Bgee:E5RFJ4 Uniprot:E5RFJ4
Length = 90
Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGK 80
+IQLG+T ++++G+
Sbjct: 72 LKIIQLGLTFTNEKGE 87
>POMBASE|SPBC29A10.09c [details] [associations]
symbol:SPBC29A10.09c "CAF1 family ribonuclease
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003676
"nucleic acid binding" evidence=ISM] [GO:0003723 "RNA binding"
evidence=IC] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006402 "mRNA catabolic
process" evidence=ISM] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 PomBase:SPBC29A10.09c GO:GO:0005634 EMBL:CU329671
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004540
HSSP:O95453 eggNOG:NOG145331 PIR:T40064 RefSeq:NP_596054.1
ProteinModelPortal:O94386 EnsemblFungi:SPBC29A10.09c.1
GeneID:2540515 KEGG:spo:SPBC29A10.09c OMA:ASIDHIC OrthoDB:EOG4DZ542
NextBio:20801642 Uniprot:O94386
Length = 427
Score = 98 (39.6 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 37/123 (30%), Positives = 61/123 (49%)
Query: 13 ENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN-TPRNAPAVESYNDL--KFNVDCTHLIQ 69
+NF ++ L+K ++ + +SID EF G LR+ N ++ +L K ++ T ++Q
Sbjct: 6 KNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT-ILQ 64
Query: 70 LGITLS--DKEGKIS-YTFEFNFS-----DFDLKKDLHA-GDSIQLLKDSGLDFDKIRKD 120
+GIT GK S N S + LK+D + SI+ L G DF+K +
Sbjct: 65 IGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQLTE 124
Query: 121 GIP 123
G+P
Sbjct: 125 GVP 127
Score = 63 (27.2 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 145 VTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVV 189
V +G+ D+ YL +F +P T FS + F+S++D K++
Sbjct: 277 VCHNGMADLVYLFSLFEGK-VPETILEFSELCLSSFKSIYDTKLL 320
Score = 38 (18.4 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 219 HHAGSDSLLTAAVF 232
H AG DS TA +F
Sbjct: 381 HEAGKDSYDTALLF 394
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.141 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 297 284 0.00085 115 3 11 22 0.44 33
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 612 (65 KB)
Total size of DFA: 205 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.94u 0.08s 22.02t Elapsed: 00:00:01
Total cpu time: 21.95u 0.08s 22.03t Elapsed: 00:00:01
Start: Fri May 10 02:14:59 2013 End: Fri May 10 02:15:00 2013