BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038950
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 137/217 (63%), Gaps = 2/217 (0%)
Query: 19 MRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKE 78
M ++ L + ++IDTEFP LR T ++A E Y D+ F+VD LIQLG+TL D
Sbjct: 1 MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60
Query: 79 GKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH 138
G+I T+E NFSDF + D SI+ L+ +GLD KIR++GI F +L K
Sbjct: 61 GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 119
Query: 139 RENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQG 198
R N+ WVTFHG YD+AYL+K FT +ALP T+E FS A SV+D+KV+AG C+GL
Sbjct: 120 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSS 179
Query: 199 LKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
+LGL LA + R G AHHAGS++ LTA VFA++
Sbjct: 180 -RLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKV 215
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 140/227 (61%), Gaps = 4/227 (1%)
Query: 10 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQ 69
VW N + M + L N ++IDTEFPG L+ TP +A Y D+KFNVD THLIQ
Sbjct: 5 VWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLIQ 64
Query: 70 LGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAP 129
LG+TL K I+ T+E N SDF+ K L SI LK++GLD DKIR++GI F
Sbjct: 65 LGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFFM 122
Query: 130 RFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAF-SGVAALFFQSVFDIKV 188
F ++L++ ++WVTF G YD AYL+K T LP T++ F V L + V+D+K
Sbjct: 123 EFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKK 182
Query: 189 VAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
+AG C GL + GL ++A +L ++R G AHHAGSDS LTA VF ++
Sbjct: 183 MAGLCSGLSS-RFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 135/228 (59%), Gaps = 4/228 (1%)
Query: 10 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQ 69
VW N E+ M + L + ++IDTEFPG L+ TP +A Y D+KFNVD THLIQ
Sbjct: 9 VWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 68
Query: 70 LGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAP 129
LG TL D+ G + T+E N SDFD K SI LK +GL+ DKIR++GI F
Sbjct: 69 LGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFR 127
Query: 130 RFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAF-SGVAALFFQSVFDIK 187
F ++L++ + WV F G YD AYLVK T LP T E F V L + VFD+K
Sbjct: 128 DFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVK 187
Query: 188 VVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
+A C GL + GL ++A +L +KR G AHHAGSDS LTA VF ++
Sbjct: 188 KIAESCSGLSS-QFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 163/290 (56%), Gaps = 6/290 (2%)
Query: 10 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQ 69
VW N + M + + L F +++ DTE+PG + T ++ + E Y +K NV+ T LIQ
Sbjct: 12 VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKLIQ 71
Query: 70 LGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFA- 128
G TL + +G+I +E NFS+F D SI+ L+ GLD KIR +G+ +
Sbjct: 72 CGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGF 131
Query: 129 -PRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIK 187
P+ + V + ++++++VTF G YD AY + I + LP T F+ F V+D K
Sbjct: 132 FPKLMTVF-RSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTK 190
Query: 188 VVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFD 247
V+AG+C+GL G LGLSKLA++L + R G AHHAGSDSL+TA VF ++K+ YE A
Sbjct: 191 VMAGFCEGL-GEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRFA-R 248
Query: 248 GFLYGM-DSRIERKPAEIMMLQYMQPLMIPQPLLVPTQFHHPLALSYYVP 296
G +YG+ S + PA + + PLM Q + FH+ +Y P
Sbjct: 249 GLIYGIGKSNLVAAPAPAPVPEPTLPLMCQQNVASYPVFHNGYVQNYEQP 298
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 135/228 (59%), Gaps = 4/228 (1%)
Query: 10 VWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQ 69
VW N E+ M + L F+ ++IDTEFPG L+ TP +A Y D+KFNVD THLIQ
Sbjct: 4 VWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLIQ 63
Query: 70 LGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAP 129
LG TL D+ G I+ T+E N SDF+ K SI LK +GL+ DKI ++GI F
Sbjct: 64 LGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFR 122
Query: 130 RFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDA-LPPTAEAF-SGVAALFFQSVFDIK 187
F ++L + + WV F G YD AYLVK T LP T E F V L + VFD+K
Sbjct: 123 DFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVK 182
Query: 188 VVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
+A C GL + GL ++A +L +KR G AHHAGSDS LTA VF ++
Sbjct: 183 KIAESCSGLSS-RFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 19/265 (7%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP----RNAPAVESYNDLKFNV 62
I +VW N E + ++ + +S+DTEFPG + R YN LK NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 63 DCTHLIQLGITLSDKEGKI---------SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLD 113
D LIQ+G+TLSD +G + Y +EFNF DFD+++D HA DSI+LL+ G+D
Sbjct: 74 DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGID 133
Query: 114 FDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFS 173
F++ R++G+ FA + E++ WVTFH YD YLVKI T LP F
Sbjct: 134 FERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFL 193
Query: 174 GVAALFF-QSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRH-GGAHHAGSDSLLTAAV 231
G+ FF V+D+K + +C+ Q L GL ++AR L V R G H AGSDSLLT
Sbjct: 194 GLLRAFFGDRVYDVKHIMRFCE--QRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251
Query: 232 FAEMKNRYELEESA--FDGFLYGMD 254
F M++ Y +E+ A G LYG++
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLE 276
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 148/259 (57%), Gaps = 14/259 (5%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVD 63
+I VW +N E M + ++++ F +++DTEFPG + R E Y LK NV+
Sbjct: 11 QIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVN 70
Query: 64 CTHLIQLGITLSDKEGKISYT--------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFD 115
+IQLG+T SD++G + ++FNF +FDL+ D++A DSI+LL+ SG+DF
Sbjct: 71 ILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFV 130
Query: 116 KIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGV 175
K + GI FA + EN+ WVTFH YD YL+K+ T LP T F +
Sbjct: 131 KNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEM 190
Query: 176 AALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
+++F V+DIK + +C L G GL+KLA +L+V+R G H AGSDSLLT+ F ++
Sbjct: 191 ISVYFPRVYDIKHLMKFCNSLHG---GLNKLAELLDVERVGICHQAGSDSLLTSCTFRKL 247
Query: 236 KNRYELEE-SAFDGFLYGM 253
+ + + + G LYG+
Sbjct: 248 QENFFIGSMEKYSGVLYGL 266
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 148/268 (55%), Gaps = 18/268 (6%)
Query: 1 MAVVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVESYNDLK 59
+ VV++ VW EN E + ++++ + +S+DTEFPG + ++ R + Y LK
Sbjct: 15 VTVVTR--EVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLK 72
Query: 60 FNVDCTHLIQLGITLSDKEGKI---------SYTFEFNFSDFDLKKDLHAGDSIQLLKDS 110
NVD LIQ+G+TLSD G + + +EFNF DFD+ +D HA DSI+LL+
Sbjct: 73 ANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQ 132
Query: 111 GLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAE 170
G+DF++ +DG+ FA + E + WVTFH YD YL+KI T LP
Sbjct: 133 GIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALG 192
Query: 171 AFSGVA-ALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRH-GGAHHAGSDSLLT 228
F V LF + V+D+K + +C+ + L GL ++AR L V R G H AGSDSLLT
Sbjct: 193 EFKRVMRVLFGERVYDVKHMMKFCE--RRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 250
Query: 229 AAVFAEMKNRYELEES--AFDGFLYGMD 254
F M++ Y +++ G LYG++
Sbjct: 251 WHAFQRMRDLYFVQDGPEKHAGVLYGLE 278
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 149/259 (57%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA F+ E +KW++FH YD YL+KI TN LP + F + LF
Sbjct: 129 EGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L ++R G H AGSDSLLT F +M+ +
Sbjct: 189 FPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 148/259 (57%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFVNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA F+ E +KW++FH YD YL+KI TN LP F + LF
Sbjct: 129 EGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L +KR G H AGSDSLLT F +M+ +
Sbjct: 189 FPVIYDVKYLMKSCKNLKG---GLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 154/265 (58%), Gaps = 12/265 (4%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C+ L+G GL ++A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKG---GLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 154/265 (58%), Gaps = 12/265 (4%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
I VW N E MR + +++ ++ +++DTEFPG + R +++ Y L+ NVD
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 65 THLIQLGITLSDKEGKISY---TFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDG 121
+IQLG+T ++++G+ T++FNF F+L +D+++ DSI LL +SGL F K ++G
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEG 130
Query: 122 IPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181
I FA + +N+KW++FH YD Y+VK+ T+ LP F + LFF
Sbjct: 131 IDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFP 190
Query: 182 SVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY-- 239
S++D+K + C+ L+G GL ++A L+++R G H AGSDSLLT F MK +
Sbjct: 191 SIYDVKYLMKSCKNLKG---GLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFE 247
Query: 240 -ELEESAFDGFLYGMDSRIERKPAE 263
++++ + G LYG+ + + +K E
Sbjct: 248 DSIDDAKYCGRLYGLGTGVAQKQNE 272
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNVD 63
+I VW +N + M + +++ F +++DTEFPG + + A Y LK NV+
Sbjct: 11 QIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVN 70
Query: 64 CTHLIQLGITLSDKEGKISYT-------FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDK 116
+IQLG+T S+++G + ++FNF +FDL D+ A DSI+LLK SG+D K
Sbjct: 71 ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 130
Query: 117 IRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVA 176
DGI FA + EN+ WVTFH YD YL+K+ T LP + F +
Sbjct: 131 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 190
Query: 177 ALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK 236
++F +V+DIK + +C L G GL+KLA +L V+R G H AGSDSLLT+ F ++K
Sbjct: 191 NVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 247
Query: 237 NRYELEE-SAFDGFLYGM 253
+ + + G LYG+
Sbjct: 248 ENFFVGPLHKYSGVLYGL 265
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 146/259 (56%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N E M+ + ++ FN +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA + E +KW++FH YD YL+KI +N LP F + LF
Sbjct: 129 EGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L ++R G H AGSDSLLT F +M+ +
Sbjct: 189 FPIIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA + E +KW++FH YD YL+KI TN LP F + LF
Sbjct: 129 EGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L ++R G H AGSDSLLT F +M+ +
Sbjct: 189 FPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA + E +KW++FH YD YL+KI TN LP F + LF
Sbjct: 129 EGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L ++R G H AGSDSLLT F +M+ +
Sbjct: 189 FPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA + E +KW++FH YD YL+KI TN LP F + LF
Sbjct: 129 EGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L ++R G H AGSDSLLT F +M+ +
Sbjct: 189 FPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 147/259 (56%), Gaps = 12/259 (4%)
Query: 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRN--TPRNAPAVESYNDLKFNV 62
+I VW N + M+ + +++ +N +++DTEFPG + + A Y L+ NV
Sbjct: 10 QRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNV 69
Query: 63 DCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRK 119
D +IQLG+T +++G+ + T++FNF F+L +D++A DSI+LL SG+ F K +
Sbjct: 70 DLLKIIQLGLTFMNEQGEYPPGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEE 128
Query: 120 DGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALF 179
+GI FA + E +KW++FH YD YL+KI TN LP F + LF
Sbjct: 129 EGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLF 188
Query: 180 FQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRY 239
F ++D+K + C+ L+G GL ++A L ++R G H AGSDSLLT F +M+ +
Sbjct: 189 FPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245
Query: 240 ---ELEESAFDGFLYGMDS 255
++++ + G LYG+ S
Sbjct: 246 FEDHIDDAKYCGHLYGLGS 264
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 146/270 (54%), Gaps = 27/270 (10%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVE--------SYND 57
+I VW N E M +++ ++ F +++DTEFPG + T P +Y+
Sbjct: 15 EIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDT 74
Query: 58 LKFNVDCTHLIQLGITLSDKEGKI-------SYTFEFNFSDFDLKKDLHAGDSIQLLKDS 110
LK NV+ LIQLG+TLSD++G + ++FNF +F++ D+ A DSI+LL+ S
Sbjct: 75 LKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKS 134
Query: 111 GLDFDKIRKDGIPRCVFAPRFLEVLSKH----RENLKWVTFHGLYDVAYLVKIFTNDALP 166
+D +K + G+ A RF E+L + + WVTFH YD YL+K+ + LP
Sbjct: 135 AIDLEKNNECGVD----AKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELP 190
Query: 167 PTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSL 226
F FF V+DIK + G+C L G GL K+A +L VKR G +H AGSDSL
Sbjct: 191 EEISDFFDQMEKFFPVVYDIKYLMGFCTNLYG---GLEKIAELLGVKRVGISHQAGSDSL 247
Query: 227 LTAAVFAEMKNRYELEE-SAFDGFLYGMDS 255
LT F +MK + + GFL+G+D+
Sbjct: 248 LTLRTFIKMKEFFFTGSLLKYSGFLFGLDN 277
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 145/262 (55%), Gaps = 24/262 (9%)
Query: 4 VSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVES-----YNDL 58
+S I +VW N + M + L+ + V+S+DTEFPG + R +S Y L
Sbjct: 22 ISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVA---RPLGVFKSSDDYHYQTL 78
Query: 59 KFNVDCTHLIQLGITLSDKEGKI---SYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFD 115
+ NVD +IQ+G+ LSD+EG + T++FNF+ F+L+ D++A +SI+LL SG+DF
Sbjct: 79 RANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFK 137
Query: 116 KIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGV 175
K ++ GI FA + +E + W+TFH YD AYL+K T LP E F +
Sbjct: 138 KHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKI 197
Query: 176 AALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235
++F +DIK + + + GL +A L + R G H AGSD+LLTA +F E+
Sbjct: 198 LCIYFPKNYDIKYI---MKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEI 254
Query: 236 KNRYELEESAFDGFLYGMDSRI 257
++RY FDG +DSR+
Sbjct: 255 RSRY------FDG---SIDSRM 267
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 141/267 (52%), Gaps = 33/267 (12%)
Query: 7 ILNVW----CENFEIVMRFLDKLLNCFNVLSIDTEFPG--------FLRNTPRNAPAVES 54
I VW E F ++ +DK F+ +++DTEFPG F N N
Sbjct: 12 IREVWDYNLVEEFALIREIVDK----FSYIAMDTEFPGVVLKPVATFKYNNDLN------ 61
Query: 55 YNDLKFNVDCTHLIQLGITLSDKEGKISYT-------FEFNFSDFDLKKDLHAGDSIQLL 107
Y LK NVD LIQ+G+T SD+ G + ++FNF +F++ +D++A +SI+LL
Sbjct: 62 YRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELL 121
Query: 108 KDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPP 167
+ G+DF K + GI F + + + WVTFHG YD YLVK+ T LP
Sbjct: 122 RQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPL 181
Query: 168 TAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLL 227
F + ++F +V+DIK + +C GL G GL++LA ++ V+R G H AGSDSLL
Sbjct: 182 KQADFFKLLYVYFPTVYDIKHLMTFCNGLFG---GLNRLAELMGVERVGICHQAGSDSLL 238
Query: 228 TAAVFAEMKNRY-ELEESAFDGFLYGM 253
T F ++K RY + G LYG+
Sbjct: 239 TLGSFRKLKERYFPGSTEKYTGVLYGL 265
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 9/241 (3%)
Query: 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKF--NVD 63
KI NV+ N E + + + +++DTEFPG + + E +N + NV+
Sbjct: 22 KIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNVN 81
Query: 64 CTHLIQLGITLSDKEGKISYT---FEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
LIQ+G + + +G++ T ++FNF +F +D+ + +S+++L+ +G+DF ++ +
Sbjct: 82 MLKLIQVGFAMVNDKGELPPTGDVWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNN 140
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GIP VF + W+TF YD YL+K T LP F F
Sbjct: 141 GIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLF 200
Query: 181 QSVFDIKVV--AGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNR 238
+ FDIK++ C + LK GL ++A L+VKR G H AGSD+LLTAA F ++K +
Sbjct: 201 PTSFDIKILLRTPNCASAK-LKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQ 259
Query: 239 Y 239
+
Sbjct: 260 F 260
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 25/272 (9%)
Query: 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVE-SYNDLKFNVDC 64
+ +VW N + +L++ +N +SI TEF G L R V+ Y ++ NVD
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDF 219
Query: 65 THLIQLGITLSDKEGKIS----YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKD 120
+ IQLG++LSD G T++FNF +FD KK++ + +S++LL+ SG++F+K
Sbjct: 220 LNPIQLGLSLSDANGNKPDNGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENL 278
Query: 121 GIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFF 180
GI F+ ++ +++ W+T+H YD+ +L+ I ND++P E F +
Sbjct: 279 GIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 338
Query: 181 QSVFDIKVVAGYCQGLQG------------LKLGLSKLARILNVKRHGGAHHAGSDSLLT 228
+ +D+ +V Q + + L+ LA L + R G SLL
Sbjct: 339 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLM 398
Query: 229 AAVFAEM------KNRYELEESAFDGFLYGMD 254
F ++ K + + + G +YG+D
Sbjct: 399 LLSFCQLSKLSMHKFPNGTDFAKYQGVIYGID 430
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 13 ENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAV--ESYNDLKFNVDCTHLIQL 70
+NF ++ L+K ++ + +SID EF G LR+ N + Y L+ + ++Q+
Sbjct: 6 KNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYTILQI 65
Query: 71 GITLS--DKEGKISYT-FEFNFS-----DFDLKKDLHA-GDSIQLLKDSGLDFDKIRKDG 121
GIT GK S N S + LK+D + SI+ L G DF+K +G
Sbjct: 66 GITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQLTEG 125
Query: 122 IP 123
+P
Sbjct: 126 VP 127
>sp|Q2YA47|PLSX_NITMU Phosphate acyltransferase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=plsX PE=3 SV=1
Length = 353
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 57 DLKFNVDCT--HLIQLGI-------TLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLL 107
DL NVDCT HL+Q G+ ++ +KE K S N + ++K + + +LL
Sbjct: 144 DLGANVDCTAEHLLQFGVMGATLVSSIENKE-KPSIGL-LNIGEEEIKGNDVVKRAAELL 201
Query: 108 KDSGLDF 114
+DSGL+F
Sbjct: 202 RDSGLNF 208
>sp|D4GUA0|AGLD_HALVD Glycosyltransferase AglD OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=aglD PE=1 SV=1
Length = 624
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 154 AYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQ-GLQGLKL--GLSKLARIL 210
AY+VK N P SG A+L + VFD+ +AG L GL GL +A +L
Sbjct: 355 AYVVKARRNIPYP------SGFASLAVERVFDLLTIAGLAGVVLVGLAATGGLDDIATVL 408
Query: 211 NVKRHGGAHHAGSDSLLTAAVFA 233
GG+ +D + TAA A
Sbjct: 409 ATGVSGGSVDVSADDVRTAAYVA 431
>sp|A8FJZ4|TIG_CAMJ8 Trigger factor OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=tig PE=3 SV=1
Length = 444
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 174 GVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSL 226
G A + + + + G+ G+ G+K+G K ++ K +G AH AG D++
Sbjct: 184 GKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIKVTFPKEYGAAHLAGKDAV 236
>sp|Q5HWX5|TIG_CAMJR Trigger factor OS=Campylobacter jejuni (strain RM1221) GN=tig PE=3
SV=1
Length = 444
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 174 GVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSL 226
G A + + + + G+ G+ G+K+G K ++ K +G AH AG D++
Sbjct: 184 GKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIKVTFPKEYGAAHLAGKDAV 236
>sp|Q46108|TIG_CAMJE Trigger factor OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=tig PE=3 SV=2
Length = 444
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 174 GVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSL 226
G A + + + + G+ G+ G+K+G K ++ K +G AH AG D++
Sbjct: 184 GKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIKVTFPKEYGAAHLAGKDAV 236
>sp|Q17QN2|TOE1_BOVIN Target of EGR1 protein 1 OS=Bos taurus GN=TOE1 PE=2 SV=1
Length = 524
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 24/228 (10%)
Query: 13 ENFEIVMRFLDKLLNCFNVLSIDTEFPGFL-RNTPRNAPAVESYNDLKFNVDCTHLIQLG 71
+NF+ + L + N +++DTE G R N E Y + ++ LG
Sbjct: 42 DNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKCLLNQCIEERYKAVCHAARTRSILSLG 101
Query: 72 ITLSDKE---GKISYTFE-FNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIP---- 123
+ ++ G+ SY + FN + +++ + S+Q L G +F++ GIP
Sbjct: 102 LACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNRQYAQGIPYHKG 161
Query: 124 --------RCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSG- 174
R FLE++ R V +GL D+ +L + F LP F+
Sbjct: 162 NDKGDESQRQSVRTLFLELIRARR---PLVLHNGLIDLVFLYQNFYAH-LPENLGTFTAD 217
Query: 175 VAALFFQSVFDIKVVAGYCQGLQG--LKLGLSKLARILNVKRHGGAHH 220
+ +F ++D K A + L+ K R +R G+ H
Sbjct: 218 LCEMFPAGIYDTKYAAEFHARFLASYLEYAFRKCERENGKQRAAGSPH 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,449,211
Number of Sequences: 539616
Number of extensions: 4669223
Number of successful extensions: 12675
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12560
Number of HSP's gapped (non-prelim): 36
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)