Query 038950
Match_columns 297
No_of_seqs 168 out of 490
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d5r_A CCR4-NOT transcription 100.0 7.6E-87 2.6E-91 613.3 21.6 242 6-253 1-252 (252)
2 4gmj_B CCR4-NOT transcription 100.0 9.5E-87 3.2E-91 622.3 21.8 246 5-256 10-265 (285)
3 2p51_A SPCC18.06C protein; DED 100.0 5.9E-86 2E-90 625.2 22.9 249 3-257 19-276 (333)
4 1uoc_A POP2; hydrolase, DEDD n 100.0 6.8E-86 2.3E-90 616.7 21.5 250 4-256 13-288 (289)
5 3d45_A Poly(A)-specific ribonu 100.0 1.2E-58 4.2E-63 462.5 20.7 232 7-240 2-393 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 1.5E-52 5E-57 411.2 19.1 229 9-239 2-397 (430)
7 1w0h_A 3'-5' exonuclease ERI1; 98.6 8E-07 2.7E-11 77.0 15.2 175 30-237 11-193 (204)
8 3v9w_A Ribonuclease T; DEDD nu 98.6 7.1E-07 2.4E-11 79.4 13.2 184 18-237 26-219 (235)
9 2f96_A Ribonuclease T; RNAse, 98.5 2.4E-06 8.3E-11 75.5 13.4 180 22-237 22-211 (224)
10 2gui_A DNA polymerase III epsi 98.4 3.3E-06 1.1E-10 72.7 12.3 170 29-236 9-182 (194)
11 1zbh_A 3'-5' exonuclease ERI1; 98.4 8.6E-06 2.9E-10 75.5 15.6 176 29-237 78-261 (299)
12 3cg7_A CRN-4, cell death-relat 98.3 7E-06 2.4E-10 76.7 14.4 172 30-237 20-207 (308)
13 2p1j_A POLIII, DNA polymerase 98.3 1E-05 3.4E-10 69.6 13.7 163 26-236 9-173 (186)
14 2xri_A ERI1 exoribonuclease 3; 98.3 2.8E-05 9.6E-10 68.8 16.3 170 30-237 32-212 (224)
15 3mxm_B Three prime repair exon 98.2 1.5E-05 5.2E-10 71.7 12.4 174 29-239 12-216 (242)
16 1zbu_A ERI-1 homolog, 3'-5' ex 98.1 1.9E-05 6.4E-10 75.2 12.8 176 29-237 128-311 (349)
17 1y97_A Three prime repair exon 98.0 7.1E-05 2.4E-09 66.3 13.6 170 29-239 10-211 (238)
18 2qxf_A Exodeoxyribonuclease I; 98.0 4.6E-05 1.6E-09 75.6 12.9 179 26-236 6-198 (482)
19 3u3y_B Three prime repair exon 97.9 0.00011 3.7E-09 69.2 12.3 192 30-257 13-239 (314)
20 1wlj_A Interferon stimulated g 97.7 4.2E-05 1.4E-09 65.9 6.4 157 28-237 4-167 (189)
21 2igi_A Oligoribonuclease; RNAs 97.3 0.0017 6E-08 54.8 10.8 165 28-239 4-178 (180)
22 2gbz_A Oligoribonuclease; ORN, 96.8 0.0071 2.4E-07 52.0 10.3 169 27-239 7-182 (194)
23 3tr8_A Oligoribonuclease; tran 96.2 0.051 1.7E-06 47.0 11.7 168 27-240 7-183 (186)
24 2kfn_A Klenow fragment of DNA 95.6 0.17 5.9E-06 51.0 14.2 157 16-237 13-191 (605)
25 3saf_A Exosome component 10; e 85.4 6.3 0.00022 38.1 11.3 82 134-236 177-274 (428)
26 4hec_A Putative uncharacterize 61.6 31 0.0011 29.7 8.1 73 141-236 106-179 (190)
27 2ogf_A Hypothetical protein MJ 44.4 6.6 0.00023 31.8 0.9 44 145-188 23-70 (122)
28 2i52_A Hypothetical protein; s 41.8 7.7 0.00026 31.4 0.9 44 145-188 18-65 (121)
29 2hbj_A Exosome complex exonucl 37.6 80 0.0027 29.9 7.5 81 134-236 154-251 (410)
30 1yt3_A Ribonuclease D, RNAse D 33.8 1E+02 0.0035 28.5 7.5 83 134-236 69-167 (375)
31 2lq0_A De novo designed antifr 24.6 5.1 0.00017 23.3 -2.1 10 286-295 5-14 (26)
32 1vk0_A Hypothetical protein; h 23.8 95 0.0032 26.6 4.9 85 134-236 103-204 (206)
33 4g3h_A Arginase (ROCF); rossma 23.1 1.3E+02 0.0046 27.5 6.1 67 8-75 206-282 (330)
34 4i4d_A Peptide synthetase NRPS 21.8 1E+02 0.0036 22.2 4.2 34 206-239 25-61 (93)
35 1dny_A Non-ribosomal peptide s 21.4 98 0.0033 22.4 4.0 35 206-240 23-60 (91)
36 1cmb_A Met APO-repressor; DNA- 20.3 41 0.0014 25.9 1.5 16 155-170 60-75 (104)
No 1
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=7.6e-87 Score=613.25 Aligned_cols=242 Identities=38% Similarity=0.673 Sum_probs=234.1
Q ss_pred eeeeeccccHHHHHHHHHHHhhcCCeeEEeccccCcccCCC--CCCChhHHHHHHhhccccccceEEEeEEeccCCCcc-
Q 038950 6 KILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP--RNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKIS- 82 (297)
Q Consensus 6 ~i~eVw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~--~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p- 82 (297)
.|||||++||++||+.|+++|++|+||||||||||++++|. +++++++||+++|+|||.++|||+|||+++++|+.|
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~ 80 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP 80 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCC
Confidence 48999999999999999999999999999999999999986 778899999999999999999999999999999987
Q ss_pred --eeEEEeeecCCCCCCCCchhhHHHHHhcCCChhhhhhCCCCCcch--hhhhccccccCCCCceeEEeecchhHHHHHH
Q 038950 83 --YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVF--APRFLEVLSKHRENLKWVTFHGLYDVAYLVK 158 (297)
Q Consensus 83 --~~wqFNF~~Fd~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~F--ll~~SGLv~~~~~~~~Witfh~~yD~~yL~k 158 (297)
.+|||||+ |++++|+|+++||+||+++||||+|++++|||+..| +++.||||++ ++++||+|||+||||||+|
T Consensus 81 ~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~--~~v~Witfhg~yDf~yL~k 157 (252)
T 2d5r_A 81 GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLC--EGVKWLSFHSGYDFGYLIK 157 (252)
T ss_dssp SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSS--SSCEEEESSCHHHHHHHHH
T ss_pred CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccC--CCceEEEecCcchHHHHHH
Confidence 39999999 999999999999999999999999999999999999 8999999999 8999999999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH-H
Q 038950 159 IFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK-N 237 (297)
Q Consensus 159 ~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~-~ 237 (297)
+|||++||+++++|.++++.+||+|||||||++.|.++++ ||++||+.||++|+|++|||||||+||++||+||+ .
T Consensus 158 ~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~---gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 158 ILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM 234 (252)
T ss_dssp HHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCS---SHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCC---CHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888 99999999999999999999999999999999999 7
Q ss_pred hcCCc--ccccCceeecC
Q 038950 238 RYELE--ESAFDGFLYGM 253 (297)
Q Consensus 238 ~f~~~--~~~~~g~l~Gl 253 (297)
+|++. .++++|+||||
T Consensus 235 ~f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 235 FFEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp TSCSSCCHHHHTTBCTTC
T ss_pred hcCCCCCHHHcCCEecCC
Confidence 88765 56999999997
No 2
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-87 Score=622.33 Aligned_cols=246 Identities=37% Similarity=0.664 Sum_probs=237.3
Q ss_pred ceeeeeccccHHHHHHHHHHHhhcCCeeEEeccccCcccCCC--CCCChhHHHHHHhhccccccceEEEeEEeccCCCcc
Q 038950 5 SKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP--RNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKIS 82 (297)
Q Consensus 5 ~~i~eVw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~--~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p 82 (297)
.+|||||++||++||+.|+++|++|+||||||||||++.+|. +++++|+||+++|+|||.++|||+|||+++++|+.|
T Consensus 10 ~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p 89 (285)
T 4gmj_B 10 QRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYP 89 (285)
T ss_dssp CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCC
T ss_pred CeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcC
Confidence 469999999999999999999999999999999999999987 788999999999999999999999999999999987
Q ss_pred ---eeEEEeeecCCCCCCCCchhhHHHHHhcCCChhhhhhCCCCCcch--hhhhccccccCCCCceeEEeecchhHHHHH
Q 038950 83 ---YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVF--APRFLEVLSKHRENLKWVTFHGLYDVAYLV 157 (297)
Q Consensus 83 ---~~wqFNF~~Fd~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~F--ll~~SGLv~~~~~~~~Witfh~~yD~~yL~ 157 (297)
.+|||||+ |++++|+|+++||+||+++||||||++++||++..| +++.||++++ ++++||+|||+||||||+
T Consensus 90 ~~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~--~~v~WvtfH~~yDf~yL~ 166 (285)
T 4gmj_B 90 PGTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLC--EGVKWLSFHSGYDFGYLI 166 (285)
T ss_dssp SSCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSC--TTCEEEESSCHHHHHHHH
T ss_pred CCeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhc--CCCceEEecchhhHHHHH
Confidence 39999999 999999999999999999999999999999999999 8899999999 899999999999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH-
Q 038950 158 KIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK- 236 (297)
Q Consensus 158 k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~- 236 (297)
|+|||++||+++++|+++++.+||.|||||||++.|.++++ ||++||+.|+++|+|++||||||||||++||+||+
T Consensus 167 k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~g---gL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~ 243 (285)
T 4gmj_B 167 KILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243 (285)
T ss_dssp HHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCS---CHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCC---hHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HhcCCc--ccccCceeecCCCC
Q 038950 237 NRYELE--ESAFDGFLYGMDSR 256 (297)
Q Consensus 237 ~~f~~~--~~~~~g~l~Gl~~~ 256 (297)
.+|++. .++++|+|||||..
T Consensus 244 ~~f~~~~~~~~~~g~l~Glg~~ 265 (285)
T 4gmj_B 244 MFFEDHIDDAKYCGHLYGLGSG 265 (285)
T ss_dssp HHHTTCCCHHHHTTCCTTSSTT
T ss_pred HHhcCCcchHHhCCEEeccCCC
Confidence 888765 46899999999965
No 3
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=5.9e-86 Score=625.18 Aligned_cols=249 Identities=36% Similarity=0.605 Sum_probs=236.5
Q ss_pred ccceeeeeccccHHHHHHHHHHHhhcCCeeEEeccccCcccCCC--CCCChhHHHHHHhhccccccceEEEeEEeccCCC
Q 038950 3 VVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP--RNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGK 80 (297)
Q Consensus 3 ~~~~i~eVw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~--~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~ 80 (297)
..+.|||||++||++||+.|+++|++|+||||||||||++++|. ++++.|+||+++|+|||.++|||+|||+++++|+
T Consensus 19 ~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~ 98 (333)
T 2p51_A 19 QISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGN 98 (333)
T ss_dssp CSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSC
T ss_pred CCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCC
Confidence 34689999999999999999999999999999999999999986 8888999999999999999999999999999999
Q ss_pred cc---eeEEEeeecCCCCCCCCchhhHHHHHhcCCChhhhhhCCCCCcch--hhhhccccccCCCCceeEEeecchhHHH
Q 038950 81 IS---YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVF--APRFLEVLSKHRENLKWVTFHGLYDVAY 155 (297)
Q Consensus 81 ~p---~~wqFNF~~Fd~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~F--ll~~SGLv~~~~~~~~Witfh~~yD~~y 155 (297)
.| .+|||||+ |++.+|+|+++||+||+++||||+|++++||++..| +++.||||++ ++++||+|||+|||||
T Consensus 99 ~p~~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~--~~V~Witfhg~YDfgy 175 (333)
T 2p51_A 99 APVEACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQ--EEVTWITFHSGYDFAY 175 (333)
T ss_dssp CCTTCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSC--TTCEEEESSCHHHHHH
T ss_pred CCCCceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccC--CCceEEEeccchhHHH
Confidence 87 49999999 999999999999999999999999999999999999 8899999999 8999999999999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHH
Q 038950 156 LVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEM 235 (297)
Q Consensus 156 L~k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl 235 (297)
|+|+|+|++||+++++|+++++.+||+|||||||++.|.+++| ||++||+.|+++|+|.+|||||||+||++||+||
T Consensus 176 LlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~g---gL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl 252 (333)
T 2p51_A 176 LLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSK---GLQDIADDLQIHRIGPQHQAGSDALLTARIFFEI 252 (333)
T ss_dssp HHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCCC---CHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccccC---CHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998988 9999999999999999999999999999999999
Q ss_pred H-HhcCC-cccccCceeecCCCCC
Q 038950 236 K-NRYEL-EESAFDGFLYGMDSRI 257 (297)
Q Consensus 236 ~-~~f~~-~~~~~~g~l~Gl~~~~ 257 (297)
+ .+|++ ..++++|+|||||...
T Consensus 253 ~~~~f~~~~~~~~~g~l~Gl~~~~ 276 (333)
T 2p51_A 253 RSRYFDGSIDSRMLNQLYGLGSTG 276 (333)
T ss_dssp HHHHHTTSCCGGGTTCCTTC----
T ss_pred HHHhcCCCchhhhCCEEeccCcCc
Confidence 9 78866 3789999999998874
No 4
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=6.8e-86 Score=616.71 Aligned_cols=250 Identities=28% Similarity=0.505 Sum_probs=228.8
Q ss_pred cceeeeeccccHHHHHHHHHHHhhcCCeeEEeccccCcccCCC--CCCChhHHHHHHhhccccccceEEEeEEeccCCCc
Q 038950 4 VSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP--RNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKI 81 (297)
Q Consensus 4 ~~~i~eVw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~--~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~ 81 (297)
.+.|||||++||++||+.|+++|++|+||||||||||++++|. ++++.|+||+++|+|||.++|||+|||+++++|+.
T Consensus 13 ~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~ 92 (289)
T 1uoc_A 13 YLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNK 92 (289)
T ss_dssp GGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCC
T ss_pred CcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCc
Confidence 3679999999999999999999999999999999999999987 77778999999999999999999999999999998
Q ss_pred c----eeEEEeeecCCCCCCCCchhhHHHHHhcCCChhhhhhCCCCCcch--hhhhccccccCCCCceeEEeecchhHHH
Q 038950 82 S----YTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVF--APRFLEVLSKHRENLKWVTFHGLYDVAY 155 (297)
Q Consensus 82 p----~~wqFNF~~Fd~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~F--ll~~SGLv~~~~~~~~Witfh~~yD~~y 155 (297)
| .+|||||+ |++++|+|+++||+||+++||||||++++||++..| +++.||||++ ++++||+|||+|||||
T Consensus 93 p~~~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~--~~v~Witfhg~yDfgy 169 (289)
T 1uoc_A 93 PDNGPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMD--DSVTWITYHAAYDLGF 169 (289)
T ss_dssp CSSSCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSC--TTSEEEESSTTHHHHH
T ss_pred CCCCcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccC--CCceEEEccCcchHHH
Confidence 7 39999999 999999999999999999999999999999999999 8899999999 8999999999999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCC------------CcchHHHHHHHcCCcccCCCcccch
Q 038950 156 LVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQG------------LKLGLSKLARILNVKRHGGAHHAGS 223 (297)
Q Consensus 156 L~k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~------------~~~~L~~la~~L~v~r~g~~HqAGs 223 (297)
|+|+|||++||+++++|.++++.+||+|||+|||++.|.+++| .+.||++||+.|||+|+|.+|||||
T Consensus 170 L~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGs 249 (289)
T 1uoc_A 170 LINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGG 249 (289)
T ss_dssp HHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHH
T ss_pred HHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHH
Confidence 9999999999999999999999999999999999999987765 2458999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhcC----C-cccccCceeecCCCC
Q 038950 224 DSLLTAAVFAEMK-NRYE----L-EESAFDGFLYGMDSR 256 (297)
Q Consensus 224 DSllT~~vF~kl~-~~f~----~-~~~~~~g~l~Gl~~~ 256 (297)
||+||++||+||+ .+|. + ..++++|+||||+.+
T Consensus 250 DSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 250 QSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCC
Confidence 9999999999999 6652 2 367999999999864
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.2e-58 Score=462.45 Aligned_cols=232 Identities=24% Similarity=0.311 Sum_probs=191.9
Q ss_pred eeeeccccHHHHHHHHHHHhhcCCeeEEeccccCcccCCC--C----CCChhHHHHHHhhccccccceEEEeEEeccCCC
Q 038950 7 ILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP--R----NAPAVESYNDLKFNVDCTHLIQLGITLSDKEGK 80 (297)
Q Consensus 7 i~eVw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~--~----~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~ 80 (297)
|+|||++||+++|+.|+++|++|+||||||||||++.+|. . .+++++||+++|+||+.++|||+|||+|+++|+
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 6899999999999999999999999999999999998774 1 457899999999999999999999999999998
Q ss_pred cc--eeEEEeeecCCC-----CCC---CCchhhHHHHHhcCCChhhhhhCCCCCcch---hh----------hhcc----
Q 038950 81 IS--YTFEFNFSDFDL-----KKD---LHAGDSIQLLKDSGLDFDKIRKDGIPRCVF---AP----------RFLE---- 133 (297)
Q Consensus 81 ~p--~~wqFNF~~Fd~-----~~d---~~~~~SI~fL~~~GfDFnk~~~~GI~~~~F---ll----------~~SG---- 133 (297)
.+ .+|||||+.|+. ..| +|+++||+||+++||||||++++||+|..+ .. ..+|
T Consensus 82 ~~~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~~~~~~ 161 (507)
T 3d45_A 82 DSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGAL 161 (507)
T ss_dssp SSCEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC-----------
T ss_pred CCceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhhccccc
Confidence 76 499999999986 333 899999999999999999999999999887 10 0111
Q ss_pred ---------------------------------cc---ccC---------------------------------------
Q 038950 134 ---------------------------------VL---SKH--------------------------------------- 138 (297)
Q Consensus 134 ---------------------------------Lv---~~~--------------------------------------- 138 (297)
+. ++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v~~~~~ 241 (507)
T 3d45_A 162 AKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDE 241 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEEEeCCH
Confidence 11 000
Q ss_pred ------------C--------------------CCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHHHHhccCcccch
Q 038950 139 ------------R--------------------ENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDI 186 (297)
Q Consensus 139 ------------~--------------------~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~vyDt 186 (297)
+ .+..||++|+.+|++||++.|+ +|||++++||++.++.+||.||||
T Consensus 242 e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~lFP~i~DT 320 (507)
T 3d45_A 242 EERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICVFPRLLDT 320 (507)
T ss_dssp ----------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHHCSCEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhCCceeEh
Confidence 0 0345666667799999999999 599999999999999999999999
Q ss_pred hHHHHh--ccccCCCcchHHHHHHHcC-----Ccc-------------cCCCcccchHHHHHHHHHHHHHHhcC
Q 038950 187 KVVAGY--CQGLQGLKLGLSKLARILN-----VKR-------------HGGAHHAGSDSLLTAAVFAEMKNRYE 240 (297)
Q Consensus 187 K~~a~~--~~~l~~~~~~L~~la~~L~-----v~r-------------~g~~HqAGsDSllT~~vF~kl~~~f~ 240 (297)
|||++. +..+.+ .++|++|++.|+ .++ .|..||||||||+||.||+||+.++.
T Consensus 321 K~la~~~~~~~~~~-~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 321 KLMASTQPFKDIIN-NTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp HHHTTSTTHHHHCC-CCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhcCccccccC-CCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 999997 334422 359999999997 333 36789999999999999999996553
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=1.5e-52 Score=411.23 Aligned_cols=229 Identities=26% Similarity=0.314 Sum_probs=189.4
Q ss_pred eeccccHHHHHHHHHHHhhcCCeeEEeccccCcccCCC------CCCChhHHHHHHhhccccccceEEEeEEeccCCCcc
Q 038950 9 NVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTP------RNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKIS 82 (297)
Q Consensus 9 eVw~~N~~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~------~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p 82 (297)
|||++||++.|+.|+++|++|+||||||||||++.+|. ..++.++||+++|+||+.++|||+|||+|+++|+.+
T Consensus 2 ~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~ 81 (430)
T 2a1r_A 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDS 81 (430)
T ss_dssp EECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTT
T ss_pred ceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCC
Confidence 79999999999999999999999999999999998874 234789999999999999999999999999999876
Q ss_pred --eeEEEeeecC----CC----CCCCCchhhHHHHHhcCCChhhhhhCCCCCcch-----h---h---------------
Q 038950 83 --YTFEFNFSDF----DL----KKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVF-----A---P--------------- 129 (297)
Q Consensus 83 --~~wqFNF~~F----d~----~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~F-----l---l--------------- 129 (297)
.+|||||++| ++ .+++|+++||+||+++||||||++++||+|.++ + +
T Consensus 82 ~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~~~~~~~ 161 (430)
T 2a1r_A 82 KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSY 161 (430)
T ss_dssp EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC------------------
T ss_pred ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 4999999999 44 247899999999999999999999999999775 0 0
Q ss_pred h---h---------------------------------------ccc--------cc---------------c-------
Q 038950 130 R---F---------------------------------------LEV--------LS---------------K------- 137 (297)
Q Consensus 130 ~---~---------------------------------------SGL--------v~---------------~------- 137 (297)
. . +|. +. +
T Consensus 162 ~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~~~~~~v~v 241 (430)
T 2a1r_A 162 VSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 241 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeecCCceEEEE
Confidence 0 0 000 00 0
Q ss_pred -C-----------------------C-----------CCceeEEeecc-hhHHHHHHHhcCCCCCCChHHHHHHHHhccC
Q 038950 138 -H-----------------------R-----------ENLKWVTFHGL-YDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181 (297)
Q Consensus 138 -~-----------------------~-----------~~~~Witfh~~-yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP 181 (297)
+ . +.-+.|+.||+ +|++|+++.|.| |||++++||++.++.+||
T Consensus 242 ~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~~-pLP~~~~eFk~~i~~lFP 320 (430)
T 2a1r_A 242 SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYC-PLPADLSEFKEMTTCVFP 320 (430)
T ss_dssp ---------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHTC-CCCSSHHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHCC
Confidence 0 0 00146789998 999999999995 999999999999999999
Q ss_pred cccchhHHHHhcc--ccCCCcchHHHHHHHcCCc--------------c----cCCCcccchHHHHHHHHHHHHHHhc
Q 038950 182 SVFDIKVVAGYCQ--GLQGLKLGLSKLARILNVK--------------R----HGGAHHAGSDSLLTAAVFAEMKNRY 239 (297)
Q Consensus 182 ~vyDtK~~a~~~~--~l~~~~~~L~~la~~L~v~--------------r----~g~~HqAGsDSllT~~vF~kl~~~f 239 (297)
.|||||||++.+. .+. ..++|+.|++.|.-. + .+..|+||||||+||.||++|+.++
T Consensus 321 ~i~DTK~la~~~~~~~~~-~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 321 RLLDTKLMASTQPFKDII-NNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp SEEEHHHHHTSTTTTTTC-SCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHhhhccchhhcc-CCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 222 235899999988532 1 2667999999999999999999665
No 7
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.64 E-value=8e-07 Score=76.97 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=108.2
Q ss_pred CeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEecc-CCCcceeEEEeeecCCCCC-CCCchhhHHHH
Q 038950 30 NVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDK-EGKISYTFEFNFSDFDLKK-DLHAGDSIQLL 107 (297)
Q Consensus 30 ~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~-~g~~p~~wqFNF~~Fd~~~-d~~~~~SI~fL 107 (297)
.||++|+|.+|+..... ...-.|||+|...++. +|+.- -.|+.+ .+... ....+.+.+.
T Consensus 11 ~~vviD~ETTGl~~~~~---------------~~~~~Iieigav~~~~~~g~i~--~~f~~l-v~P~~~~~i~~~~~~i- 71 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP---------------EFVHEIIEFPVVLLNTHTLEIE--DTFQQY-VRPEINTQLSDFCISL- 71 (204)
T ss_dssp EEEECCCEECCCTTCCT---------------TSCCCEEEEEEEEEETTTCSEE--EEEEEE-BCCSSSCSCCHHHHHH-
T ss_pred EEEEEEEecCCcCCCCC---------------CCCCcEEEEEEEEEECCCCEEe--eeeeeE-ECCCCCCccCHHHHHH-
Confidence 68999999999853210 0123599999999985 67653 346655 33322 2344444433
Q ss_pred HhcCCChhhhhhCCCCCcchhhhhccccccCC--CCceeEEeec-chhHH-HHHHHhc--CCCCCCChHHHHHHHHhccC
Q 038950 108 KDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHR--ENLKWVTFHG-LYDVA-YLVKIFT--NDALPPTAEAFSGVAALFFQ 181 (297)
Q Consensus 108 ~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~~--~~~~Witfh~-~yD~~-yL~k~l~--g~~LP~t~~eF~~~l~~~FP 181 (297)
+||.=..+. .|.+...-+......+.+.. ..-.++..|+ .+|+. +|-+.+. |-++|. ++.
T Consensus 72 --~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-----------~~~ 137 (204)
T 1w0h_A 72 --TGITQDQVD-RADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAK 137 (204)
T ss_dssp --HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG-----------GGS
T ss_pred --hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc-----------ccc
Confidence 788766654 45444332111111111100 1223444454 59997 8887764 334442 233
Q ss_pred cccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHHH
Q 038950 182 SVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 182 ~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~~ 237 (297)
..+||+.+++........+.+|+.+++.+|++..|..|.|-.|+..|+++|.+|.+
T Consensus 138 ~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~ 193 (204)
T 1w0h_A 138 KWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQ 193 (204)
T ss_dssp EEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEHHHHHHHHhCCCCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHH
Confidence 57899888876432211123799999999999888899999999999999999983
No 8
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.57 E-value=7.1e-07 Score=79.41 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=113.6
Q ss_pred HHHHHHHHhhcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEec--cCCCcceeEEEeeecCCCC
Q 038950 18 VMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSD--KEGKISYTFEFNFSDFDLK 95 (297)
Q Consensus 18 el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~--~~g~~p~~wqFNF~~Fd~~ 95 (297)
++..+.+.+++..||++|+|-+|+... .-.|||+|+..++ ++|+......|+.+ ....
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~-------------------~~~IieIgav~~~~~~~g~i~~~~~f~~~-v~P~ 85 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK-------------------TDALLEIAAITLKMDEQGWLMPDTTLHFH-VEPF 85 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT-------------------TBCEEEEEEEEEEECTTSCEEEEEEEEEE-BCCC
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC-------------------CCeEEEEEEEEEEEcCCCcccccceEEEE-ECCC
Confidence 445566778899999999999998421 1249999999986 46764324556665 3332
Q ss_pred -CCCCchhhHHHHHhcCCChhhhhhCCCCCcchhhhhccccccC-----CCCceeEEeecchhHHHHHHHhcCCCCCCCh
Q 038950 96 -KDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH-----RENLKWVTFHGLYDVAYLVKIFTNDALPPTA 169 (297)
Q Consensus 96 -~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~-----~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~ 169 (297)
.....+.+.+ -+|+.-....+.|.+...-+......+.+. .++..+|+.+..+|+.+|-+.+....++..
T Consensus 86 ~~~~i~~~~~~---i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~- 161 (235)
T 3v9w_A 86 VGANLQPEALA---FNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN- 161 (235)
T ss_dssp TTCBCCHHHHH---HHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCC-
T ss_pred CCCCCCHHHHH---HhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCC-
Confidence 2234444444 267766545556655444311111111100 012344444446999999877642122110
Q ss_pred HHHHHHHHhccC-cccchhHHHHhccccCCCcchHHHHHHHcCCcccC-CCcccchHHHHHHHHHHHHHH
Q 038950 170 EAFSGVAALFFQ-SVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHG-GAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 170 ~eF~~~l~~~FP-~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g-~~HqAGsDSllT~~vF~kl~~ 237 (297)
.+.+ .++||..+++.... +.+|+.+++.+|++..+ ..|.|..|+..|+++|.+|..
T Consensus 162 --------p~~~~~~~Dt~~la~~~~p----~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~ 219 (235)
T 3v9w_A 162 --------PFHPFATFDTAALAGLALG----QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 219 (235)
T ss_dssp --------CEEEEEEEEHHHHHHHHHS----CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCCcEEEhHHHHHHHhC----CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 0111 37899998886532 23899999999998754 789999999999999999983
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.45 E-value=2.4e-06 Score=75.46 Aligned_cols=180 Identities=17% Similarity=0.235 Sum_probs=112.0
Q ss_pred HHHHhhcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEecc--CCCcceeEEEeeecCCCCCCCC
Q 038950 22 LDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDK--EGKISYTFEFNFSDFDLKKDLH 99 (297)
Q Consensus 22 I~~~i~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~--~g~~p~~wqFNF~~Fd~~~d~~ 99 (297)
+.+-+++..||++|+|.+|+... .-.|||+|+..++. +|+....-.|+.+.-+......
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~-------------------~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i 82 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA-------------------TDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANI 82 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT-------------------TBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBC
T ss_pred hhccccCCcEEEEEeeCCCCCCC-------------------CCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCC
Confidence 56667888999999999997421 12599999999984 6764224556655222212234
Q ss_pred chhhHHHHHhcCCChhhhhhCCCCCcchhhhhcccccc----CCCCceeEEeec-chhHHHHHHHhcCCCCCCChHHHHH
Q 038950 100 AGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSK----HRENLKWVTFHG-LYDVAYLVKIFTNDALPPTAEAFSG 174 (297)
Q Consensus 100 ~~~SI~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~----~~~~~~Witfh~-~yD~~yL~k~l~g~~LP~t~~eF~~ 174 (297)
.+.+.+. +||.=....+.|.+...-+......+.+ ...+-..++.|| .+|+.+|.+.+....++.
T Consensus 83 ~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~------- 152 (224)
T 2f96_A 83 EPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKR------- 152 (224)
T ss_dssp CHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCC-------
T ss_pred CHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCc-------
Confidence 4444443 6877655566666654321000001110 000123445565 599999988774211220
Q ss_pred HHHhcc-C-cccchhHHHHhccccCCCcchHHHHHHHcCCcccC-CCcccchHHHHHHHHHHHHHH
Q 038950 175 VAALFF-Q-SVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHG-GAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 175 ~l~~~F-P-~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g-~~HqAGsDSllT~~vF~kl~~ 237 (297)
.-| + ..+||..+++... + +.+|+.+++.+|++..+ ..|-|-.|+..|+++|.+|..
T Consensus 153 ---~p~~~~~~iDt~~l~~~~~---~-~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~ 211 (224)
T 2f96_A 153 ---NPFHPFSSFDTATLAGLAY---G-QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 211 (224)
T ss_dssp ---CCEEEEEEEEHHHHHHHHH---S-CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCccccceeeHHHHHHHHc---C-CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 002 2 4789998887643 2 23799999999998754 689999999999999999984
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.39 E-value=3.3e-06 Score=72.72 Aligned_cols=170 Identities=18% Similarity=0.261 Sum_probs=103.1
Q ss_pred CCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCCCCCchhhHHHHH
Q 038950 29 FNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLK 108 (297)
Q Consensus 29 ~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~d~~~~~SI~fL~ 108 (297)
.+||++|+|.+|+..... | -+.-.|||+|...++ +|+.. .-.|+.. .+... ...+.+.+.
T Consensus 9 ~~~vviD~ETTGl~~~~~--------~------~~~~~Iieig~v~~~-~~~~~-~~~f~~l-v~P~~-~i~~~~~~i-- 68 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGA--------H------YEGHKIIEIGAVEVV-NRRLT-GNNFHVY-LKPDR-LVDPEAFGV-- 68 (194)
T ss_dssp CEEEEEEEEESCCCSSSS--------T------TTTCCEEEEEEEEEE-TTEEC-SCCEEEE-CCCSS-CCCHHHHHH--
T ss_pred CCEEEEEeeCCCCCCccc--------C------CCCCEEEEEEEEEEE-CCeEe-ccEEEEE-ECcCC-cCCHHHHHh--
Confidence 579999999999854210 0 012359999999887 34322 1235544 23222 334444333
Q ss_pred hcCCChhhhhhCCCCCcchhhhhccccccCCCCceeEEeecchhHHHHHHHhc--CCCCCCChHHHHHHHHhccCcccch
Q 038950 109 DSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFT--NDALPPTAEAFSGVAALFFQSVFDI 186 (297)
Q Consensus 109 ~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~~~~~~Witfh~~yD~~yL~k~l~--g~~LP~t~~eF~~~l~~~FP~vyDt 186 (297)
+||.=..+. .+.+...-+......+ . +-..|++++.+|+.+|-+.+. |.+.|. .. .+..++||
T Consensus 69 -~GIt~~~l~-~~~~~~~v~~~~~~~l-~---~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~~~~iDt 133 (194)
T 2gui_A 69 -HGIADEFLL-DKPTFAEVADEFMDYI-R---GAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TFCKVTDS 133 (194)
T ss_dssp -HCCCHHHHT-TSCCHHHHHHHHHHHH-T---TSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GTSEEEEH
T ss_pred -hCcCHHHHh-CCCCHHHHHHHHHHHH-C---CCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------ccCceeeH
Confidence 788755543 3333222111111222 2 223454444599999988775 444442 10 01257898
Q ss_pred hHHHHhcc-ccCCCcchHHHHHHHcCCcccC-CCcccchHHHHHHHHHHHHH
Q 038950 187 KVVAGYCQ-GLQGLKLGLSKLARILNVKRHG-GAHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 187 K~~a~~~~-~l~~~~~~L~~la~~L~v~r~g-~~HqAGsDSllT~~vF~kl~ 236 (297)
-.+++... +. +.+|+.+++.+|++..+ ..|.|-+|+..|+++|.+|.
T Consensus 134 ~~l~~~~~p~~---~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~ 182 (194)
T 2gui_A 134 LAVARKMFPGK---RNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT 182 (194)
T ss_dssp HHHHHHHSTTS---CCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCC---CCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 77776542 22 23899999999999877 48999999999999999987
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.37 E-value=8.6e-06 Score=75.53 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=109.0
Q ss_pred CCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEecc-CCCcceeEEEeeecCCCCC-CCCchhhHHH
Q 038950 29 FNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDK-EGKISYTFEFNFSDFDLKK-DLHAGDSIQL 106 (297)
Q Consensus 29 ~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~-~g~~p~~wqFNF~~Fd~~~-d~~~~~SI~f 106 (297)
-.||++|+|.+|+...+. ...-.|||+|...++. +|+. .-.|+.+ ..... ....+.+.+.
T Consensus 78 ~~~vviD~ETTGl~~~~~---------------~~~~~IIeIgaV~v~~~~g~i--~~~f~~l-V~P~~~~~i~~~~~~i 139 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPP---------------EFVHEIIEFPVVLLNTHTLEI--EDTFQQY-VRPEINTQLSDFCISL 139 (299)
T ss_dssp SEEEEECCEECCCTTCCT---------------TCCCCEEEEEEEEEETTTCCE--EEEEEEE-BCCSSSCSCCHHHHHH
T ss_pred ceEEEEEeecccCCCCCC---------------CCCCceEEEEEEEEECCCCeE--eeeeeee-ecCCCCCCCCHHHHHH
Confidence 468999999999853211 1223599999999986 4654 3356655 23222 2344545444
Q ss_pred HHhcCCChhhhhhCCCCCcchhhhhccccccC---CCCceeEEeecchhHH-HHHHHhc--CCCCCCChHHHHHHHHhcc
Q 038950 107 LKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH---RENLKWVTFHGLYDVA-YLVKIFT--NDALPPTAEAFSGVAALFF 180 (297)
Q Consensus 107 L~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~---~~~~~Witfh~~yD~~-yL~k~l~--g~~LP~t~~eF~~~l~~~F 180 (297)
+||.=..+. .|.+...-+......+.+. .+....|+.++.+|+. +|-+.+. |.++|. ++
T Consensus 140 ---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~-----------~~ 204 (299)
T 1zbh_A 140 ---TGITQDQVD-RADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FA 204 (299)
T ss_dssp ---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GG
T ss_pred ---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc-----------cc
Confidence 787766554 4544443211111111110 0123455555569999 9988763 444442 12
Q ss_pred CcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHHH
Q 038950 181 QSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 181 P~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~~ 237 (297)
..++|++.+.....++...+.+|+.+++.+|++..|..|.|-.|+..|+++|.+|..
T Consensus 205 ~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~ 261 (299)
T 1zbh_A 205 KKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQ 261 (299)
T ss_dssp SEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 347899877655422221124899999999999888899999999999999999983
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.35 E-value=7e-06 Score=76.67 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=109.1
Q ss_pred CeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEecc-CCCcceeEEEeeecCCCCCC-CCchhhHHHH
Q 038950 30 NVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDK-EGKISYTFEFNFSDFDLKKD-LHAGDSIQLL 107 (297)
Q Consensus 30 ~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~-~g~~p~~wqFNF~~Fd~~~d-~~~~~SI~fL 107 (297)
.||++|+|.+|+..... | .-.|||+|...++. +|+.-..-.|+.. .+.... ...+.+.+.
T Consensus 20 ~~vviD~ETTGl~~~~d--------~--------~~eIIEIgaV~vd~~~g~i~~~~~f~~l-V~P~~~p~i~~~~~~l- 81 (308)
T 3cg7_A 20 TLLILDFETTSDAANQD--------Y--------PCEVIQFAIVAYDVPNDKIREDISFNKY-VKPVLNRTLTKNCVDF- 81 (308)
T ss_dssp EEEEEEEEECCBTTBCS--------C--------CCCEEEEEEEEEETTTTEEEEEEEEEEE-CBCSSBCSCCHHHHHH-
T ss_pred eEEEEEeecCCCCCCCC--------C--------CCCeEEEEEEEEEcCCCEEeeccceeeE-ECCCCCCCCCHHHHHH-
Confidence 58999999999853210 0 13599999999985 6654322256655 333222 244444443
Q ss_pred HhcCCChhhhhhCCCCCcch------hhhhccccccCCCCceeEEeecchhH-HHHHHHhc--CCCCCCChHHHHHHHHh
Q 038950 108 KDSGLDFDKIRKDGIPRCVF------APRFLEVLSKHRENLKWVTFHGLYDV-AYLVKIFT--NDALPPTAEAFSGVAAL 178 (297)
Q Consensus 108 ~~~GfDFnk~~~~GI~~~~F------ll~~SGLv~~~~~~~~Witfh~~yD~-~yL~k~l~--g~~LP~t~~eF~~~l~~ 178 (297)
+||.=..+. .|.+...- .+....+| . -+..|++ ||.+|+ .+|-+.+. |-++|.
T Consensus 82 --tGIt~e~v~-~ap~~~evl~~f~~~l~~~~lv-a--hn~~lv~-~g~fD~~~fL~~~~~~~g~~~p~----------- 143 (308)
T 3cg7_A 82 --TGIPQRSID-TADTFDVVYEQFQQWLITLGLE-E--GKFAFVC-DSRQDLWRIAQYQMKLSNIQMPA----------- 143 (308)
T ss_dssp --HCCCHHHHH-TSCBHHHHHHHHHHHHHHHCCC-T--TSEEEEE-SSSHHHHTHHHHHHHHTTCCCCG-----------
T ss_pred --cCCCHHHHh-cCCCHHHHHHHHHHHHHhCCcC-C--cceEEec-cCcccHHHHHHHHHHHcCCCCch-----------
Confidence 777765544 36555442 11222232 3 2556655 578999 68876653 445543
Q ss_pred ccCcccchhHHHHhcc-ccCC----CcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHHH
Q 038950 179 FFQSVFDIKVVAGYCQ-GLQG----LKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 179 ~FP~vyDtK~~a~~~~-~l~~----~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~~ 237 (297)
+|...+||+-+++... .... .+.+|..+++.+|++..|..|.|-.|+..|+++|.+|..
T Consensus 144 ~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 144 FFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp GGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcceeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 2234679987776532 1110 024899999999999888889999999999999999973
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.32 E-value=1e-05 Score=69.58 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=99.2
Q ss_pred hhcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCCCCCchhhHH
Q 038950 26 LNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQ 105 (297)
Q Consensus 26 i~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~d~~~~~SI~ 105 (297)
+.+.+||++|+|.+|+... .-.|||+|...++ +|+. .-.|+.+ ..... ...+.+.+
T Consensus 9 l~~~~~v~iD~ETTGl~~~-------------------~~~IieIg~v~~~-~g~i--~~~f~~l-v~P~~-~i~~~~~~ 64 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQ-------------------VDEIIEIGAVKIQ-GGQI--VDEYHTL-IKPSR-EISRKSSE 64 (186)
T ss_dssp ----CEEEEEEEESCSCTT-------------------TCCEEEEEEEEEE-TTEE--EEEEEEE-CBCSS-CCCHHHHH
T ss_pred CcCCCEEEEEEECCCCCCC-------------------CCeEEEEEEEEEE-CCEE--EEEEEEE-ECcCC-CCCHHHhh
Confidence 5677999999999997421 1149999999886 4543 2345554 22222 23333333
Q ss_pred HHHhcCCChhhhhhCCCCCcchhhhhccccccCCCCceeEEeecchhHHHHHHHhc--CCCCCCChHHHHHHHHhccCcc
Q 038950 106 LLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFT--NDALPPTAEAFSGVAALFFQSV 183 (297)
Q Consensus 106 fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~~~~~~Witfh~~yD~~yL~k~l~--g~~LP~t~~eF~~~l~~~FP~v 183 (297)
-+|+.=..+. .+.+...-+......+ . +...|++++.+|+.+|-+.+. |.+.|. ..+
T Consensus 65 ---i~GIt~~~l~-~~~~~~~v~~~~~~~l-~---~~~lv~hn~~fD~~~L~~~~~~~g~~~~~-------------~~~ 123 (186)
T 2p1j_A 65 ---ITGITQEMLE-NKRSIEEVLPEFLGFL-E---DSIIVAHNANFDYRFLRLWIKKVMGLDWE-------------RPY 123 (186)
T ss_dssp ---HHCCCHHHHT-TCCBHHHHHHHHHHHS-S---SCEEEETTHHHHHHHHHHHHHHHHCCCCC-------------CCE
T ss_pred ---hcCCCHHHHh-cCCCHHHHHHHHHHHH-C---CCEEEEECcHHHHHHHHHHHHHcCCCCCC-------------CCE
Confidence 2777755443 3443333211111222 2 223444445599999987764 223221 147
Q ss_pred cchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH
Q 038950 184 FDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 184 yDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~ 236 (297)
+||..+++...+.. +.+|+.+++.+|++..+ .|.|-.|+..|+++|.+|.
T Consensus 124 iDt~~l~~~~~~~~--~~~L~~l~~~~gi~~~~-~H~Al~Da~~t~~l~~~l~ 173 (186)
T 2p1j_A 124 IDTLALAKSLLKLR--SYSLDSVVEKLGLGPFR-HHRALDDARVTAQVFLRFV 173 (186)
T ss_dssp EEHHHHHHHHTCCS--CCSHHHHHHHTTCCSTT-CCHHHHHHHHHHHHHHHHT
T ss_pred EeHHHHHHHHhhcC--CCCHHHHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHH
Confidence 89988887654222 34899999999998655 6999999999999999987
No 14
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.29 E-value=2.8e-05 Score=68.84 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=106.0
Q ss_pred CeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccC-CCcceeEEEeeecCCCCC-CCCchhhHHHH
Q 038950 30 NVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKE-GKISYTFEFNFSDFDLKK-DLHAGDSIQLL 107 (297)
Q Consensus 30 ~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~-g~~p~~wqFNF~~Fd~~~-d~~~~~SI~fL 107 (297)
.||++|+|.+|+.... +.-.|||+|...++.+ |+. .-.|+.+ .+... ....+.+.+.
T Consensus 32 ~~vviD~ETTGl~~~~-----------------d~~~IieIgav~v~~~~~~i--~~~f~~l-V~P~~~~~i~~~~~~l- 90 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI-----------------HPQEIIEFPILKLNGRTMEI--ESTFHMY-VQPVVHPQLTPFCTEL- 90 (224)
T ss_dssp EEEEECCEECCCC-CC-----------------SSCCEEEEEEEEEETTTCCE--EEEEEEE-CCCSSSCSCCHHHHHH-
T ss_pred eEEEEEEEcCCCCCCC-----------------CCcceEEEEEEEEecCCcEE--eeeeeeE-ECCCCCCcCCHHHHHH-
Confidence 5999999999974320 1235999999999865 443 3456665 33322 2344444443
Q ss_pred HhcCCChhhhhhCCCCCcch------hhhhccccccCCCCceeEEeecchhHHHHH-HHh--cCCCCCCChHHHHHHHHh
Q 038950 108 KDSGLDFDKIRKDGIPRCVF------APRFLEVLSKHRENLKWVTFHGLYDVAYLV-KIF--TNDALPPTAEAFSGVAAL 178 (297)
Q Consensus 108 ~~~GfDFnk~~~~GI~~~~F------ll~~SGLv~~~~~~~~Witfh~~yD~~yL~-k~l--~g~~LP~t~~eF~~~l~~ 178 (297)
+||.=..+ +.|.+...- .+....+|-. .-...|++. |.+|+.+++ +.+ .|-++|.
T Consensus 91 --tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~h-n~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~----------- 154 (224)
T 2xri_A 91 --TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDP-NVKSIFVTC-GDWDLKVMLPGQCQYLGLPVAD----------- 154 (224)
T ss_dssp --HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTST-TSCEEEEES-SSHHHHTHHHHHHHHHTCCCCG-----------
T ss_pred --hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccC-CCceEEEEe-ChhhHHHHHHHHHHHhCCCCcc-----------
Confidence 78776544 445554442 1222223321 123567766 589999865 333 3444442
Q ss_pred ccCcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHHH
Q 038950 179 FFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 179 ~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~~ 237 (297)
+|...+|++-..+...++.. +.+|..+++.+|++..|..|-|-.|+..|+++|.+|.+
T Consensus 155 ~~~~~iD~~~~~~~~~~~~p-~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 155 YFKQWINLKKAYSFAMGCWP-KNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp GGSCEEEHHHHHHHHHTSCC-TTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccceEeHHHHHHHHhccCC-CCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 23357786544433333322 24899999999999888899999999999999999973
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.19 E-value=1.5e-05 Score=71.73 Aligned_cols=174 Identities=13% Similarity=0.115 Sum_probs=107.7
Q ss_pred CCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCC---------------Ccc-eeEEEeeecC
Q 038950 29 FNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEG---------------KIS-YTFEFNFSDF 92 (297)
Q Consensus 29 ~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g---------------~~p-~~wqFNF~~F 92 (297)
-+||++|+|-+|+... .=.|||+|+..++.++ ..+ ..-.|+.. .
T Consensus 12 ~~~vv~D~ETTGl~~~-------------------~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l-i 71 (242)
T 3mxm_B 12 QTLIFLDLEATGLPSS-------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC-I 71 (242)
T ss_dssp SEEEEEEEEESSCGGG-------------------CCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEE-C
T ss_pred ceEEEEEeecCCCCCC-------------------CCeeEEEEEEEecCCcccccccccccccccccccchhheeEEE-E
Confidence 3699999999998532 1259999999887542 111 13456655 3
Q ss_pred CCCCCCCchhhHHHHHhcCCChhhhhhCCCCCc--chhhhhccccccCCCCceeEEeec-chhHHHHHHHhcCCCCCCCh
Q 038950 93 DLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRC--VFAPRFLEVLSKHRENLKWVTFHG-LYDVAYLVKIFTNDALPPTA 169 (297)
Q Consensus 93 d~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~--~Fll~~SGLv~~~~~~~~Witfh~-~yD~~yL~k~l~g~~LP~t~ 169 (297)
+.. ....+.+.+ -+||.=..+...|+|.. ..+-.....+.+..+...+|++++ .+|+.+|-+.+....+|..
T Consensus 72 ~P~-~~i~~~~~~---i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~- 146 (242)
T 3mxm_B 72 APG-KACSPGASE---ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP- 146 (242)
T ss_dssp CCS-SCCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT-
T ss_pred CCC-CCCCHHHHH---hcCCCHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCC-
Confidence 332 234555543 49999999988887543 321111112211001234455554 7999999999863222211
Q ss_pred HHHHHHHHhccC-cccchhHHHHhcc---------ccCCCcchHHHHHHH-cCCcccCCCcccchHHHHHHHHHHHHH-H
Q 038950 170 EAFSGVAALFFQ-SVFDIKVVAGYCQ---------GLQGLKLGLSKLARI-LNVKRHGGAHHAGSDSLLTAAVFAEMK-N 237 (297)
Q Consensus 170 ~eF~~~l~~~FP-~vyDtK~~a~~~~---------~l~~~~~~L~~la~~-L~v~r~g~~HqAGsDSllT~~vF~kl~-~ 237 (297)
.-+ .++||--+++... ... +-+|+.+++. +|++..+ .|.|-+|+..|+++|.++. .
T Consensus 147 ---------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~--~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 147 ---------LDGTFCVDSIAALKALEQASSPSGNGSRK--SYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp ---------TTTCEEEEHHHHHHHHHHHHCC------C--CCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSSHHH
T ss_pred ---------ccCCeEeehHHHHHHHHhhcCccccCCCC--CcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHHHHH
Confidence 011 3678877766422 122 3489999977 9998654 7999999999999999998 5
Q ss_pred hc
Q 038950 238 RY 239 (297)
Q Consensus 238 ~f 239 (297)
+.
T Consensus 215 ~~ 216 (242)
T 3mxm_B 215 LL 216 (242)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.15 E-value=1.9e-05 Score=75.23 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=106.6
Q ss_pred CCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEecc-CCCcceeEEEeeecCCCCC-CCCchhhHHH
Q 038950 29 FNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDK-EGKISYTFEFNFSDFDLKK-DLHAGDSIQL 106 (297)
Q Consensus 29 ~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~-~g~~p~~wqFNF~~Fd~~~-d~~~~~SI~f 106 (297)
-.||+||+|.+|+...+. ...-.|||||+..++. +|+. .-.|+.+ ..... ....+.+.+.
T Consensus 128 ~~~vviD~ETTGl~~~~~---------------~~~deIIEIgaV~vd~~~g~i--~~~f~~l-VkP~~~~~I~~~~t~i 189 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPP---------------EFVHEIIEFPVVLLNTHTLEI--EDTFQQY-VRPEINTQLSDFCISL 189 (349)
T ss_dssp SEEEECCCEECCCTTCCT---------------TCCCCEEECCEEEEETTTTEE--EEEECCB-EECSSSCSCCHHHHHH
T ss_pred CeEEEEEEecCCCCCcCC---------------CCCCeEEEEEEEEEECCCceE--eEEEEEE-ECCCCCCCCCHHHHHH
Confidence 478999999999853211 1223599999999986 4543 2345543 22222 1344444444
Q ss_pred HHhcCCChhhhhhCCCCCcchhhhhccccccC---CCCceeEEeecchhHH-HHHHHhc--CCCCCCChHHHHHHHHhcc
Q 038950 107 LKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH---RENLKWVTFHGLYDVA-YLVKIFT--NDALPPTAEAFSGVAALFF 180 (297)
Q Consensus 107 L~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~---~~~~~Witfh~~yD~~-yL~k~l~--g~~LP~t~~eF~~~l~~~F 180 (297)
+||.=..+. .|.+...-+-.....+.+. .+....|+.++.+|+. +|-+.+. |.++|. ++
T Consensus 190 ---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~-----------~~ 254 (349)
T 1zbu_A 190 ---TGITQDQVD-RADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FA 254 (349)
T ss_dssp ---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GG
T ss_pred ---hCCCHHHHh-CCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-----------cc
Confidence 677766554 3443333211111111110 0112445555559999 9887763 444442 12
Q ss_pred CcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHHH
Q 038950 181 QSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 181 P~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~~ 237 (297)
-.+.|++.+.....++.....+|+.+++.+|++..|..|.|-.|+..|+++|.+|..
T Consensus 255 ~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~ 311 (349)
T 1zbu_A 255 KKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp SEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 247899877655422221124899999999999888899999999999999999983
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.04 E-value=7.1e-05 Score=66.27 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=103.9
Q ss_pred CCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccC---------------CCcceeEEEeeecCC
Q 038950 29 FNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKE---------------GKISYTFEFNFSDFD 93 (297)
Q Consensus 29 ~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~---------------g~~p~~wqFNF~~Fd 93 (297)
.+||++|+|.+|+... .-.|||+|+..++.+ |+. .-.|+.. .+
T Consensus 10 ~~~v~iD~ETTGl~~~-------------------~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i--~~~f~~l-v~ 67 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV-------------------EPEIAELSLFAVHRSSLENPEHDESGALVLPRV--LDKLTLC-MC 67 (238)
T ss_dssp SEEEEEEEEESSCGGG-------------------CCCEEEEEEEEEEHHHHTSCBC---CCCBCCSS--CEEEEEE-CC
T ss_pred CeEEEEEeeCCCcCCC-------------------CCcEEEEEEEEeccccccccccccccccccccc--ceeeEEE-EC
Confidence 5799999999998421 124999999999854 121 3346655 33
Q ss_pred CCCCCCchhhHHHHHhcCCChhhhhhCCCCCcc--hhhhhccccccCCCCceeEEeec-chhHHHHHHHhc--CCCCCCC
Q 038950 94 LKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCV--FAPRFLEVLSKHRENLKWVTFHG-LYDVAYLVKIFT--NDALPPT 168 (297)
Q Consensus 94 ~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~--Fll~~SGLv~~~~~~~~Witfh~-~yD~~yL~k~l~--g~~LP~t 168 (297)
... ...+.+.+ -+|+.=..+...|.|... ..-....++....+...+|++++ .+|+.+|-+.+. |.++|..
T Consensus 68 P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~ 143 (238)
T 1y97_A 68 PER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRD 143 (238)
T ss_dssp CSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTT
T ss_pred CCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCC
Confidence 322 34444443 389988888777776642 20001111111001244555555 799999988774 3344321
Q ss_pred hHHHHHHHHhccCcccchhHHHHhcc----------ccCCCcchHHHHHH-HcCCcccCCCcccchHHHHHHHHHHHHH-
Q 038950 169 AEAFSGVAALFFQSVFDIKVVAGYCQ----------GLQGLKLGLSKLAR-ILNVKRHGGAHHAGSDSLLTAAVFAEMK- 236 (297)
Q Consensus 169 ~~eF~~~l~~~FP~vyDtK~~a~~~~----------~l~~~~~~L~~la~-~L~v~r~g~~HqAGsDSllT~~vF~kl~- 236 (297)
-.++||-.+++... +.. +.+|+.+++ .+|++. ...|.|-.|+..|+++|.+|.
T Consensus 144 ------------~~~iDt~~l~~~~~~~~~p~~~~p~~~--~~~L~~l~~~~~gi~~-~~~H~Al~Da~~ta~l~~~l~~ 208 (238)
T 1y97_A 144 ------------TVCLDTLPALRGLDRAHSHGTRARGRQ--GYSLGSLFHRYFRAEP-SAAHSAEGDVHTLLLIFLHRAA 208 (238)
T ss_dssp ------------CEEEEHHHHHHHHHHHC------------CCSHHHHHHHHHSSCC-C---CHHHHHHHHHHHHHHTHH
T ss_pred ------------CEEEEHHHHHHHHHhccCccccCCCCC--CCCHHHHHHHHhCCCC-ccCccHHHHHHHHHHHHHHHHH
Confidence 13678877776642 222 348999999 499875 457999999999999999998
Q ss_pred Hhc
Q 038950 237 NRY 239 (297)
Q Consensus 237 ~~f 239 (297)
.++
T Consensus 209 ~~~ 211 (238)
T 1y97_A 209 ELL 211 (238)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.01 E-value=4.6e-05 Score=75.58 Aligned_cols=179 Identities=19% Similarity=0.169 Sum_probs=108.3
Q ss_pred hhcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCCCC-CchhhH
Q 038950 26 LNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDL-HAGDSI 104 (297)
Q Consensus 26 i~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~d~-~~~~SI 104 (297)
+++.+||++|+|.+|+... .-.|||+|...++.+|+.-+ -.|+.+ .....+. ..++++
T Consensus 6 ~~~~~~vv~DlETTGl~p~-------------------~d~IIEIgaV~vd~~g~ii~-~~f~~l-VkP~~~ilp~p~a~ 64 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA-------------------LDRPAQFAAIRTDSEFNVIG-EPEVFY-CKPADDYLPQPGAV 64 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT-------------------TSCEEEEEEEEECTTSCBCS-CCEEEE-BCCCTTCCCCHHHH
T ss_pred CCCCCEEEEEEECCCCCCC-------------------CCeEEEEEEEEEECCCeEEe-eeeEEE-ECCCCCCCCCHHHH
Confidence 4567899999999998421 12599999999998786531 125655 3333332 255666
Q ss_pred HHHHhcCCChhhhhhCCCCCcchhhhhccccccCCCCceeEEeec-chhHHHHHHHhcCCCCCCChHHHHHHHHhccCcc
Q 038950 105 QLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHG-LYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSV 183 (297)
Q Consensus 105 ~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~~~~~~Witfh~-~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~v 183 (297)
+-+||.=..+...|.+....+-.....+.. ++..+|+++| .+|+.+|-+.+...-++.-...+. -....
T Consensus 65 ---~IhGIT~e~l~~ap~~~~evl~~f~~~l~~--~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~-----~~~~~ 134 (482)
T 2qxf_A 65 ---LITGITPQEARAKGENEAAFAARIHSLFTV--PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ-----HDNSR 134 (482)
T ss_dssp ---HHHCCCHHHHHHHCBCHHHHHHHHHHHHTS--TTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTG-----GGCEE
T ss_pred ---HHhCCCHHHHhcCCCCHHHHHHHHHHHHcC--CCCEEEEECCHHHHHHHHHHHHHHhCCCccccccc-----cCCce
Confidence 448998888887787644431111122221 2334444442 699999988876322221100000 00135
Q ss_pred cchhHHHHhccc-------cC----C-CcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH
Q 038950 184 FDIKVVAGYCQG-------LQ----G-LKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 184 yDtK~~a~~~~~-------l~----~-~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~ 236 (297)
+||--+++.+.. +. + .+.+|+.+++.+|++. +..|-|-+|++.|+.+|.+|+
T Consensus 135 iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~-~~aHrAL~DA~aTa~l~~~l~ 198 (482)
T 2qxf_A 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIAMAKLVK 198 (482)
T ss_dssp EEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC-C---CTTHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 687666665431 11 1 1347999999999976 457999999999999999987
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.88 E-value=0.00011 Score=69.19 Aligned_cols=192 Identities=12% Similarity=0.093 Sum_probs=111.9
Q ss_pred CeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCC---------------Ccc-eeEEEeeecCC
Q 038950 30 NVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEG---------------KIS-YTFEFNFSDFD 93 (297)
Q Consensus 30 ~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g---------------~~p-~~wqFNF~~Fd 93 (297)
.||++|+|-+|+... .=.|||||+..++.++ ..+ ..-.|+.. .+
T Consensus 13 tfVv~DlETTGL~~~-------------------~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~l-I~ 72 (314)
T 3u3y_B 13 TLIFLDLEATGLPSS-------------------RPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC-IA 72 (314)
T ss_dssp EEEEEEEEESSCGGG-------------------CCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEE-CB
T ss_pred CEEEEEEECCCCCCC-------------------CCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEE-EC
Confidence 599999999998532 1249999999987542 111 13556655 33
Q ss_pred CCCCCCchhhHHHHHhcCCChhhhhhCCCCCc--chhhhhccccccCCCCceeEEeec--chhHHHHHHHhcCCCCCCCh
Q 038950 94 LKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRC--VFAPRFLEVLSKHRENLKWVTFHG--LYDVAYLVKIFTNDALPPTA 169 (297)
Q Consensus 94 ~~~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~--~Fll~~SGLv~~~~~~~~Witfh~--~yD~~yL~k~l~g~~LP~t~ 169 (297)
.. ..+.+++.+. +||.=+.+...|++.. ..+-.....+.+. +.-..++-|| .+|+.+|-+.+....++...
T Consensus 73 P~-~~I~~~a~~I---hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~-~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~ 147 (314)
T 3u3y_B 73 PG-KACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ-PQPCCLVAHNGDRYDFPLLQTELARLSTPSPL 147 (314)
T ss_dssp CS-SCCCHHHHHH---HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS-CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT
T ss_pred CC-CCCCHHHHHh---cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC-CCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC
Confidence 32 2355555554 9999999999998643 2211111112110 1223444555 69999999988532222100
Q ss_pred HHHHHHHHhccC-cccchhHHHHhc-c----ccC--CCcchHHHHHHH-cCCcccCCCcccchHHHHHHHHHHHHH-Hhc
Q 038950 170 EAFSGVAALFFQ-SVFDIKVVAGYC-Q----GLQ--GLKLGLSKLARI-LNVKRHGGAHHAGSDSLLTAAVFAEMK-NRY 239 (297)
Q Consensus 170 ~eF~~~l~~~FP-~vyDtK~~a~~~-~----~l~--~~~~~L~~la~~-L~v~r~g~~HqAGsDSllT~~vF~kl~-~~f 239 (297)
.+ ...||--+++.. + +.. ..+-+|+.+++. +|++.. ..|.|-+|++.|+++|.++. .++
T Consensus 148 ----------~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 148 ----------DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp ----------TTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHHH
T ss_pred ----------CCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01 145665544421 1 110 013489999999 999864 58999999999999999998 554
Q ss_pred C-----CcccccCceeecCCCCC
Q 038950 240 E-----LEESAFDGFLYGMDSRI 257 (297)
Q Consensus 240 ~-----~~~~~~~g~l~Gl~~~~ 257 (297)
+ ...-.---.+||+...-
T Consensus 217 ~~~~~~~~p~~~i~pmy~~~~~~ 239 (314)
T 3u3y_B 217 QWVDEHARPFSTVKPMYGTPATT 239 (314)
T ss_dssp HHHHHHCEEGGGSCCSCC-----
T ss_pred HHHhhcCCCHHHcccceeEEcCC
Confidence 2 11223345678886553
No 20
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.73 E-value=4.2e-05 Score=65.87 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=87.7
Q ss_pred cCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCCCCCchhhHHHH
Q 038950 28 CFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLL 107 (297)
Q Consensus 28 ~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~d~~~~~SI~fL 107 (297)
..+||++|+|.+|+.... .-.|+|+|+. +.+|+. . |+.+ ..... ...+.+.+.
T Consensus 4 ~~~~vviD~ETTGl~~~~------------------~~~iiei~~v--~~~g~~--i--~~~l-V~P~~-~i~~~~~~i- 56 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHR------------------ESGLARCSLV--NVHGAV--L--YDKF-IRPEG-EITDYRTRV- 56 (189)
T ss_dssp --CEEEEEEEEEEETTTT------------------EEEEEEEEEE--CTTCCE--E--EEEE-EECSS-CEEECCHHH-
T ss_pred CCeEEEEEeECcCcCCCC------------------CceEEEEEEE--eCCCCE--E--EeeE-ecCCC-CCCccccCC-
Confidence 458999999999984210 1237799874 556653 2 4433 12111 223333332
Q ss_pred HhcCCChhhhhhCCCCCcchhhhhccccccCCCCceeEEeec-chhHHHHHHHhcCCCCCCChHHHHHHHHhccCcccch
Q 038950 108 KDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHG-LYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDI 186 (297)
Q Consensus 108 ~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~~~~~~Witfh~-~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~vyDt 186 (297)
+||.=..+.. +.+...-+......+ . + +.++.|| .+|+.+|-+ .+|. ..++||
T Consensus 57 --~GIt~~~l~~-a~~~~~v~~~~~~~l-~---~-~~lV~hn~~fD~~~L~~-----~~~~-------------~~~idt 110 (189)
T 1wlj_A 57 --SGVTPQHMVG-ATPFAVARLEILQLL-K---G-KLVVGHDLKHDFQALKE-----DMSG-------------YTIYDT 110 (189)
T ss_dssp --HCCCHHHHTT-CEEHHHHHHHHHHHH-T---T-SEEEESSHHHHHHHTTC-----CCTT-------------CEEEEG
T ss_pred --CCCCHHHHcC-CCCHHHHHHHHHHHH-C---C-CEEEECCcHHHHHHHHH-----hCCC-------------Cceech
Confidence 6665444332 333222111111122 1 2 3455566 499987643 3332 137888
Q ss_pred hHHHHhcc--ccCC-CcchHHHHHHH-cCCcccCC--CcccchHHHHHHHHHHHHHH
Q 038950 187 KVVAGYCQ--GLQG-LKLGLSKLARI-LNVKRHGG--AHHAGSDSLLTAAVFAEMKN 237 (297)
Q Consensus 187 K~~a~~~~--~l~~-~~~~L~~la~~-L~v~r~g~--~HqAGsDSllT~~vF~kl~~ 237 (297)
..+....+ .+.+ .+.+|+.+++. ||++..+. .|.|-.|+..|+++|.+|..
T Consensus 111 ~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~ 167 (189)
T 1wlj_A 111 STDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167 (189)
T ss_dssp GGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 65543221 2211 13489999998 89886554 89999999999999999983
No 21
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=97.31 E-value=0.0017 Score=54.77 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=88.5
Q ss_pred cCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCCC---CCchhhH
Q 038950 28 CFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKD---LHAGDSI 104 (297)
Q Consensus 28 ~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~d---~~~~~SI 104 (297)
+-+||++|+|.+|+... .-.|||+|...++.+|+.- .-.|+.. .+.... ...+.+.
T Consensus 4 ~~~~v~iD~ETTGl~~~-------------------~~~IieIg~v~~~~~~~~~-~~~~~~l-v~P~~~i~~~i~~~~~ 62 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE-------------------RDRIIEIATLVTDANLNIL-AEGPTIA-VHQSDEQLALMDDWNV 62 (180)
T ss_dssp GGCEEEEEEEESSSCTT-------------------TCCEEEEEEEEECTTCCEE-EEEEEEE-CCCCHHHHTTCCHHHH
T ss_pred CCcEEEEEeeCCCCCCC-------------------CCceEEEEEEEEcCCCcEe-cCCcceE-ECCCHHHhhcCCHHHH
Confidence 45899999999998421 1149999999888766543 2236655 222211 1222232
Q ss_pred HHHHhcCCChhhhhhCCCCCcchhhhhccccccC-CCCceeEEeec-chhHHHHHHHhcCCCCCCChHHHHHHHHhccC-
Q 038950 105 QLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH-RENLKWVTFHG-LYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ- 181 (297)
Q Consensus 105 ~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~-~~~~~Witfh~-~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP- 181 (297)
+.-.-+|+.=.. .+.|.+...-+......+.+. .++-..++.|| .+|+.+|-+.+- .+ ...++
T Consensus 63 ~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~---------~~----~~~~~~ 128 (180)
T 2igi_A 63 RTHTASGLVERV-KASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP---------EL----EAYFHY 128 (180)
T ss_dssp HHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCH---------HH----HHHSCS
T ss_pred HHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHH---------Hh----ccCCCc
Confidence 222235654333 334444433211111111110 01123556677 699999987653 11 22333
Q ss_pred cccchhH---HHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH-Hhc
Q 038950 182 SVFDIKV---VAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK-NRY 239 (297)
Q Consensus 182 ~vyDtK~---~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~-~~f 239 (297)
...|+.- +++.. .. ++. .|+ ..+..|.|-+|+..|+++|.+++ ++|
T Consensus 129 ~~~d~~tl~~l~~~~---~p---~~~-----~~i-~~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 129 RYLDVSTLKELARRW---KP---EIL-----DGF-TKQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp CEEETHHHHHHHHHH---CG---GGG-----GGS-CCCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ceeeHHHHHHHHHHh---Ch---Hhh-----hCC-CCcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 3678433 44332 11 111 144 34568999999999999999998 554
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=96.84 E-value=0.0071 Score=52.03 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=85.5
Q ss_pred hcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCCCC---Cchhh
Q 038950 27 NCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDL---HAGDS 103 (297)
Q Consensus 27 ~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~d~---~~~~S 103 (297)
.+.+||++|+|-+|+... .=.|||+|....+.+++.. .-.|+.. .+..... ..+..
T Consensus 7 ~~~~~vviD~ETTGl~p~-------------------~d~IieIgav~~~~~~~~~-~~~~~~~-v~p~~~i~~~~~~~~ 65 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD-------------------RDSIIEIATIVTDAQLNVL-AEGPELA-IAHSLETLEAMDEWN 65 (194)
T ss_dssp -CCEEEEEEEEESCSCTT-------------------TCCEEEEEEEEEETTCCEE-EECCCEE-CCCCHHHHHTSCSHH
T ss_pred CCCCEEEEEeECCCCCCC-------------------CCccEEEEEEEEcCCccee-ccCceEE-EeCCHHHhhccchHH
Confidence 556899999999998521 1149999987744333222 1234443 2211100 11111
Q ss_pred HHHHHhcCCChhhhhhCCCCCcchhhhhccccccC--CCCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHHHHhccC
Q 038950 104 IQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH--RENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ 181 (297)
Q Consensus 104 I~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~--~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP 181 (297)
.+.-.-+|+.=. ..+.|.+...-+......+.+. .....+|.++..+|+.+|-+.+- .+ ...++
T Consensus 66 ~~~~~itGIt~~-~l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~---------~~----~~~~~ 131 (194)
T 2gbz_A 66 RNQHRRSGLWQR-VLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS---------RL----ERYFH 131 (194)
T ss_dssp HHHHHHHTHHHH-HHHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCH---------HH----HHHSC
T ss_pred HHHHHhhCCCHH-HHhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHH---------Hh----cccCC
Confidence 122223666533 3444555443311111112110 01222444444599999988753 11 12333
Q ss_pred -cccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH-Hhc
Q 038950 182 -SVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK-NRY 239 (297)
Q Consensus 182 -~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~-~~f 239 (297)
+..|+.-+.+.++.+.. . +++ ++ +....|.|-+|+..|+++|.+++ +++
T Consensus 132 ~~~~d~~~l~~l~~~~~p---~---~~~--~i-~~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 132 YRNLDVSTIKELARRWAP---A---VAS--GF-AKSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp SCEEEHHHHHHHHHHHCG---G---GGT--TC-CCCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred CccccHHHHHHHHHHhCH---H---HHh--CC-CCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 46687654433332222 1 111 23 34568999999999999999998 544
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=96.24 E-value=0.051 Score=47.00 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=95.3
Q ss_pred hcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCCC--CCCchhhH
Q 038950 27 NCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKK--DLHAGDSI 104 (297)
Q Consensus 27 ~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~~--d~~~~~SI 104 (297)
++.+||++|+|-||+.... =.|||+|.-..+.+++.-. ..+.+..-+..+ +...+.+.
T Consensus 7 ~~~~~v~~D~ETTGL~p~~-------------------d~IiEIgaV~~d~~~~i~~-~~~~~~i~~p~~~l~~~~~~~~ 66 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPER-------------------DRIIEIATIVTNSHLDILA-EGPAFAIHQPDKLLTAMDNWNT 66 (186)
T ss_dssp CTTCEEEEEEEESSSCTTT-------------------CCEEEEEEEEECTTCCEEE-ECCCEECCCCHHHHTTSCHHHH
T ss_pred CCCcEEEEEEECCCCCCCC-------------------CceEEEEEEEEcCCeEEee-eeEEEEEeCCccccccCCcccH
Confidence 4568999999999985321 1499999996665544321 112222111111 11233344
Q ss_pred HHHHhcCCChhhhhhCCCCCcchhhhhccccccC-CCCceeEEeec-chhHHHHHHHhcCCCCCCChHHHHHHHHhccC-
Q 038950 105 QLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKH-RENLKWVTFHG-LYDVAYLVKIFTNDALPPTAEAFSGVAALFFQ- 181 (297)
Q Consensus 105 ~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~-~~~~~Witfh~-~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP- 181 (297)
+--.-+|+. ++..+.|.+....+-..-..+... .++-..++.|+ .+|.+||-+.+- .+...|+
T Consensus 67 ~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~-------------~~~~~~~~ 132 (186)
T 3tr8_A 67 SHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMP-------------RLNQFFHY 132 (186)
T ss_dssp HHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCH-------------HHHHHSCS
T ss_pred HHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHH-------------HcCCCCCC
Confidence 433446776 666777766555411111112100 01335666777 599999988742 1234455
Q ss_pred cccc--h-hHHHHhccccCCCcchHHHHHHHcCCcccCCCcccchHHHHHHHHHHHHH-HhcC
Q 038950 182 SVFD--I-KVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMK-NRYE 240 (297)
Q Consensus 182 ~vyD--t-K~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~HqAGsDSllT~~vF~kl~-~~f~ 240 (297)
++.| | |.|++.. .. ++.. ++ .....|.|=+|+.-|...+.-.+ .+|.
T Consensus 133 ~~iDvsTl~elar~~---~P---~~~~-----~~-~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 133 RHLDVTTLKILAQRW---AP---QIAA-----AH-IKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp CEEEHHHHHHHHHHH---CH---HHHT-----TS-CCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred cEEeHHHHHHHHHHH---Cc---cccc-----cC-CCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 4889 4 4466543 22 3321 33 35679999999999999988888 6664
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=95.60 E-value=0.17 Score=50.97 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhcCCeeEEeccccCcccCCCCCCChhHHHHHHhhccccccceEEEeEEeccCCCcceeEEEeeecCCCC
Q 038950 16 EIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLK 95 (297)
Q Consensus 16 ~~el~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~t~eerY~~lk~nVd~~~iiQlGLt~~~~~g~~p~~wqFNF~~Fd~~ 95 (297)
++++..+.+.++.+.+|++|||.+|+... . -.++++|++. .+|+ .|-+ ++.
T Consensus 13 ~~~l~~~~~~l~~~~~va~DtEttgl~~~---~----------------~~iv~I~~~~--~~g~---~~yi-----p~~ 63 (605)
T 2kfn_A 13 EETLKAWIAKLEKAPVFAFDTETDSLDNI---S----------------ANLVGLSFAI--EPGV---AAYI-----PVA 63 (605)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEESCSCTT---T----------------CCEEEEEEEE--ETTE---EEEE-----ECC
T ss_pred HHHHHHHHHhcccCCeEEEEEecCCCCcc---c----------------CceEEEEEEE--cCCc---EEEE-----ecc
Confidence 46666666667778999999999997421 0 1277777774 3343 2312 111
Q ss_pred CCCCchhhHHHHHhcCCChhhhhhCCCCCcchhhhhccccccCCCCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHH
Q 038950 96 KDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGV 175 (297)
Q Consensus 96 ~d~~~~~SI~fL~~~GfDFnk~~~~GI~~~~Fll~~SGLv~~~~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~ 175 (297)
... +. .....++... +-....++.+ +++.||.++..+|+.+|.+ .|-.++
T Consensus 64 ~~~-----~~--~~~~l~~~~v----------l~~L~~~L~d--~~i~kV~hnak~D~~~L~~--~Gi~l~--------- 113 (605)
T 2kfn_A 64 HDY-----LD--APDQISRERA----------LELLKPLLED--EKALKVGQNLKYDRGILAN--YGIELR--------- 113 (605)
T ss_dssp CCS-----TT--CCCCCCHHHH----------HHHHHHHHTC--TTSCEEESSHHHHHHHHHT--TTCCCC---------
T ss_pred ccc-----cc--cccccCHHHH----------HHHHHHHHcC--CCCeEEEECcHHHHHHHHH--CCCCCC---------
Confidence 100 00 0001111110 0011123344 5678888777899998876 343221
Q ss_pred HHhccCcccchhHHHHhccccCCCcchHHHHHHHc-CCccc------CC---------------CcccchHHHHHHHHHH
Q 038950 176 AALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARIL-NVKRH------GG---------------AHHAGSDSLLTAAVFA 233 (297)
Q Consensus 176 l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L-~v~r~------g~---------------~HqAGsDSllT~~vF~ 233 (297)
+.++||..++..+..-.. +-+|+.|++.+ ++..+ |. .|-|..|+.+|.+.+.
T Consensus 114 -----~~~~DT~laayLL~p~~~-~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~ 187 (605)
T 2kfn_A 114 -----GIAFDTMLESYILNSVAG-RHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHL 187 (605)
T ss_dssp -----CEEEEHHHHHHHHCTTSS-CCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CccccHHHHHHHhCCCCC-CCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 237899988877652211 34899999887 76532 11 1448899999999999
Q ss_pred HHHH
Q 038950 234 EMKN 237 (297)
Q Consensus 234 kl~~ 237 (297)
+|..
T Consensus 188 ~L~~ 191 (605)
T 2kfn_A 188 KMWP 191 (605)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
No 25
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=85.40 E-value=6.3 Score=38.12 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=52.9
Q ss_pred ccccCCCCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHH-cCC
Q 038950 134 VLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARI-LNV 212 (297)
Q Consensus 134 Lv~~~~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~-L~v 212 (297)
++.+ +++.+|.+...+|+..|.+.+ |- ....++||...+..++. . +.||..|++. ||+
T Consensus 177 lL~d--p~i~KV~H~~k~Dl~~L~~~~-Gi---------------~~~~~fDT~lAa~lL~~-~--~~gL~~Lv~~~Lg~ 235 (428)
T 3saf_A 177 SLTD--PAIVKVFHGADSDIEWLQKDF-GL---------------YVVNMFDTHQAARLLNL-G--RHSLDHLLKLYCNV 235 (428)
T ss_dssp HHTC--TTSEEEESSCHHHHHHHHHHH-CC---------------CCSSEEEHHHHHHHTTC-S--CCSHHHHHHHHHCC
T ss_pred HHcC--CCceEEEeehHHHHHHHHHHc-CC---------------CcCceeechhHHHHhCC-C--CCCHHHHHHHHcCC
Confidence 3445 567777655569988765443 21 12348899988877752 1 2489998865 564
Q ss_pred ccc---------------CCCcccchHHHHHHHHHHHHH
Q 038950 213 KRH---------------GGAHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 213 ~r~---------------g~~HqAGsDSllT~~vF~kl~ 236 (297)
.-. ...+-|..|+..+.+.+-+|+
T Consensus 236 ~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~ 274 (428)
T 3saf_A 236 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMR 274 (428)
T ss_dssp CCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 011336789999999999988
No 26
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=61.57 E-value=31 Score=29.69 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=40.9
Q ss_pred CceeEEeecchhHHHHHHHhcC-CCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHHcCCcccCCCc
Q 038950 141 NLKWVTFHGLYDVAYLVKIFTN-DALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAH 219 (297)
Q Consensus 141 ~~~Witfh~~yD~~yL~k~l~g-~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L~v~r~g~~H 219 (297)
.+.=++..++||...|.+++-. ..||.....| ..|++-+...++ ... | -++.+..|
T Consensus 106 ~~eLwa~~~~yD~~~L~ql~g~m~~lP~~~p~~----------~~dlr~~~~~~g-~~~----l--------p~~~~~~H 162 (190)
T 4hec_A 106 SIELWAWVGAYDHVALCQLWGPMTALPPTVPRF----------TRELRQLWEDRG-CPR----M--------PPRPRDVH 162 (190)
T ss_dssp EEEEEESSCHHHHHHHHTTTSSGGGSCTTSCSS----------CEEHHHHHHHTT-CCC----C--------CC-----C
T ss_pred CCEEEEecccccHHHHHHHhcccccCCcccchh----------hHHHHHHHHHcC-CCC----C--------CCCCCCCc
Confidence 3444567778999988876531 3455443222 234454444432 110 0 01246689
Q ss_pred ccchHHHHHHHHHHHHH
Q 038950 220 HAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 220 qAGsDSllT~~vF~kl~ 236 (297)
.|=.||-..+++|..|.
T Consensus 163 ~AL~DAR~n~~~~~~~~ 179 (190)
T 4hec_A 163 DALVDARDQLRRFRLIT 179 (190)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 99999999999998886
No 27
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=44.43 E-value=6.6 Score=31.78 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=34.2
Q ss_pred EEeecchhHHHHHHHhcCCCC-CCChHHHHHHHH---hccCcccchhH
Q 038950 145 VTFHGLYDVAYLVKIFTNDAL-PPTAEAFSGVAA---LFFQSVFDIKV 188 (297)
Q Consensus 145 itfh~~yD~~yL~k~l~g~~L-P~t~~eF~~~l~---~~FP~vyDtK~ 188 (297)
.+|-+|.-||-|+++|.|.|+ |+|.+.-.+.+. ..=|.+.|+|.
T Consensus 23 A~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V 70 (122)
T 2ogf_A 23 AVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKV 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCceEEEEE
Confidence 468889999999999999999 998776655544 44577777654
No 28
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=41.83 E-value=7.7 Score=31.38 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=34.0
Q ss_pred EEeecchhHHHHHHHhcCCCC-CCChHHHHHHHH---hccCcccchhH
Q 038950 145 VTFHGLYDVAYLVKIFTNDAL-PPTAEAFSGVAA---LFFQSVFDIKV 188 (297)
Q Consensus 145 itfh~~yD~~yL~k~l~g~~L-P~t~~eF~~~l~---~~FP~vyDtK~ 188 (297)
.+|-+|.-||-|+++|.|.|+ |+|.+.-.+.+. +.=|.+.|+|.
T Consensus 18 A~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V 65 (121)
T 2i52_A 18 AFFEAGIKLGAIFHQYTGIPVNSENASMAEEFIERSTMIQPFVENVRI 65 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred HHHHhhhhhhhhhhhccCCccCcccHHHHHHHHHHHHhcCCceEEEEE
Confidence 468889999999999999999 998776665554 44476766654
No 29
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=37.61 E-value=80 Score=29.91 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=55.1
Q ss_pred ccccCCCCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHHc-CC
Q 038950 134 VLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARIL-NV 212 (297)
Q Consensus 134 Lv~~~~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L-~v 212 (297)
++.+ +++.+|.+...+|+..|.+.+ |- ....++||...+..++.- +.||.+|++.+ |+
T Consensus 154 lL~d--~~i~KV~h~~k~Dl~~L~~~~-Gi---------------~~~~~fDt~lAa~LL~~~---~~~L~~L~~~~lg~ 212 (410)
T 2hbj_A 154 VFTN--PSIVKVFHGAFMDIIWLQRDL-GL---------------YVVGLFDTYHASKAIGLP---RHSLAYLLENFANF 212 (410)
T ss_dssp HHTC--TTSEEEESSCHHHHHHHHHHH-CC---------------CCSSEEEHHHHHHHHTCS---CCSHHHHHHHHSCC
T ss_pred HHcC--CCceEEEEehHHHHHHHHHHc-CC---------------CcCCEEEcHHHHHHhCCC---ccCHHHHHHHHcCC
Confidence 3445 678888777779998887654 21 122489999888776522 24899999875 54
Q ss_pred cccCC----------------CcccchHHHHHHHHHHHHH
Q 038950 213 KRHGG----------------AHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 213 ~r~g~----------------~HqAGsDSllT~~vF~kl~ 236 (297)
.- +. ..-|..|+..+..++-+|+
T Consensus 213 ~l-~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~ 251 (410)
T 2hbj_A 213 KT-SKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLR 251 (410)
T ss_dssp CC-CCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CC-CccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 11 1236789999999999988
No 30
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=33.78 E-value=1e+02 Score=28.46 Aligned_cols=83 Identities=16% Similarity=0.339 Sum_probs=55.0
Q ss_pred ccccCCCCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHHHHhccCcccchhHHHHhccccCCCcchHHHHHHHc-CC
Q 038950 134 VLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARIL-NV 212 (297)
Q Consensus 134 Lv~~~~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~~~~l~~~~~~L~~la~~L-~v 212 (297)
++.+ +++.+|.+...+|+..|.+.+ |- ....++||...+..++. . .+.||+.|++.. |+
T Consensus 69 ll~d--~~i~Kv~h~~k~Dl~~L~~~~-Gi---------------~~~~~fDt~lAa~lL~~-~-~~~~L~~L~~~~l~~ 128 (375)
T 1yt3_A 69 ILRD--PSITKFLHAGSEDLEVFLNVF-GE---------------LPQPLIDTQILAAFCGR-P-MSWGFASMVEEYSGV 128 (375)
T ss_dssp HHHC--TTSEEEESSCHHHHHHHHHHH-SS---------------CCSSEEEHHHHHHHTTC-C-TTCCHHHHHHHHHCC
T ss_pred HHcC--CCceEEEeeHHHHHHHHHHHc-CC---------------CCCcEEEcHHHHHHcCC-C-CChhHHHHHHHHcCC
Confidence 3445 677888777779998887643 21 11247899988877753 2 245899999865 65
Q ss_pred cccC---------------CCcccchHHHHHHHHHHHHH
Q 038950 213 KRHG---------------GAHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 213 ~r~g---------------~~HqAGsDSllT~~vF~kl~ 236 (297)
.-.. ..+-|..|+..+..++-+|.
T Consensus 129 ~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~ 167 (375)
T 1yt3_A 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM 167 (375)
T ss_dssp CCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4210 01236789999999998888
No 31
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=24.62 E-value=5.1 Score=23.28 Aligned_cols=10 Identities=60% Similarity=0.956 Sum_probs=7.8
Q ss_pred cCcccccccc
Q 038950 286 HHPLALSYYV 295 (297)
Q Consensus 286 ~~~~~~~~~~ 295 (297)
-||||+|+.|
T Consensus 5 fhplaasfiv 14 (26)
T 2lq0_A 5 FHPLAASFIV 14 (26)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhHHHHH
Confidence 3899998865
No 32
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=23.77 E-value=95 Score=26.58 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=53.7
Q ss_pred ccccCCCCceeEEeecchhHHHHHHHhcCCCCCCChHHHHHHHHhccCcccchhHHHHh-ccccCCCcchHHHHHHH-cC
Q 038950 134 VLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGY-CQGLQGLKLGLSKLARI-LN 211 (297)
Q Consensus 134 Lv~~~~~~~~Witfh~~yD~~yL~k~l~g~~LP~t~~eF~~~l~~~FP~vyDtK~~a~~-~~~l~~~~~~L~~la~~-L~ 211 (297)
++.+ ++++-|.+....|+..|.+.+- . ...+++|+..++.. ++.-...+.||+.+++. ||
T Consensus 103 lL~d--~~i~Kvg~~~~~D~~~L~~~~g-~---------------~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg 164 (206)
T 1vk0_A 103 FFAS--KFVTFVGVQIEEDLDLLRENHG-L---------------VIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLW 164 (206)
T ss_dssp HHTC--SSSEEEESSCHHHHHHHHHHHC-C---------------CCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHC
T ss_pred HhcC--CCceEEEeccHHHHHHHHHhcC-C---------------CcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhC
Confidence 3455 6777777666799998866542 1 12259999777643 43211123589998865 45
Q ss_pred Ccc-c--------------CCCcccchHHHHHHHHHHHHH
Q 038950 212 VKR-H--------------GGAHHAGSDSLLTAAVFAEMK 236 (297)
Q Consensus 212 v~r-~--------------g~~HqAGsDSllT~~vF~kl~ 236 (297)
+.- - .+.+-|-.|++....+|.+|+
T Consensus 165 ~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~ 204 (206)
T 1vk0_A 165 SDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLS 204 (206)
T ss_dssp CCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 0 123447889999999998885
No 33
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=23.14 E-value=1.3e+02 Score=27.55 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=43.6
Q ss_pred eeeccccHHHHHHHHHHHhhcCC--eeEEec------cccCcccCCCCCCChhHHHHHHhhccc--cccceEEEeEEe
Q 038950 8 LNVWCENFEIVMRFLDKLLNCFN--VLSIDT------EFPGFLRNTPRNAPAVESYNDLKFNVD--CTHLIQLGITLS 75 (297)
Q Consensus 8 ~eVw~~N~~~el~~I~~~i~~~~--fIAiDt------EFpGv~~~p~~~~t~eerY~~lk~nVd--~~~iiQlGLt~~ 75 (297)
.|| +.++++.+..+++.++.+. ||++|. .+||+......--+..|--..+|.-.+ ..+++-+.|+=+
T Consensus 206 ~ei-~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~pgGlt~~e~~~il~~l~~~~~~~vvg~DivEv 282 (330)
T 4g3h_A 206 DAI-RENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLESFKDRLKAVEVTEY 282 (330)
T ss_dssp HHH-HHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCSSCBCHHHHHHHHHHHHHHTTTTEEEEEEECC
T ss_pred HHh-hcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEE
Confidence 345 6677788888888888765 999997 558865432222355666666776655 556665555533
No 34
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=21.82 E-value=1e+02 Score=22.23 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHcCCcccCC---CcccchHHHHHHHHHHHHHHhc
Q 038950 206 LARILNVKRHGG---AHHAGSDSLLTAAVFAEMKNRY 239 (297)
Q Consensus 206 la~~L~v~r~g~---~HqAGsDSllT~~vF~kl~~~f 239 (297)
+++.||++.++. ..+.|-||+.+.+.-.++++-|
T Consensus 25 ~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 61 (93)
T 4i4d_A 25 WAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELV 61 (93)
T ss_dssp HHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHh
Confidence 467788877654 4579999999999888888544
No 35
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=21.42 E-value=98 Score=22.43 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=27.1
Q ss_pred HHHHcCCcccCC---CcccchHHHHHHHHHHHHHHhcC
Q 038950 206 LARILNVKRHGG---AHHAGSDSLLTAAVFAEMKNRYE 240 (297)
Q Consensus 206 la~~L~v~r~g~---~HqAGsDSllT~~vF~kl~~~f~ 240 (297)
+++.|+++.++. .-+.|-||+.+.+.-.++++.|+
T Consensus 23 ~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 60 (91)
T 1dny_A 23 WERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQ 60 (91)
T ss_dssp HHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHC
Confidence 467788877654 34789999999999988886554
No 36
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.30 E-value=41 Score=25.85 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=12.9
Q ss_pred HHHHHhcCCCCCCChH
Q 038950 155 YLVKIFTNDALPPTAE 170 (297)
Q Consensus 155 yL~k~l~g~~LP~t~~ 170 (297)
-+++-+||+|||.+.+
T Consensus 60 AFLHA~TGQPLP~D~D 75 (104)
T 1cmb_A 60 AFLHAFTGQPLPDDAD 75 (104)
T ss_dssp HHHHHHHCCCCCCGGG
T ss_pred HHHHHhcCCCCCCchh
Confidence 4678899999998753
Done!