Citrus Sinensis ID: 038950

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MAVVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFDGFLYGMDSRIERKPAEIMMLQYMQPLMIPQPLLVPTQFHHPLALSYYVPA
cccccEEEEEcHHHHHHHHHHHHHHHHHcccEEEccCCccccccccccccccHHHHHHHcccccccEEEEEEEEEccccccCEEEEEEccccccccccccHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHccccccEEEEccccHHHHHHHHHccccccccHHHHHHHHHHHcccEEHHHHHHHHHccccccccHHHHHHHHcccCEcccccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccccccHHHHHccccccccccccccccccccccccccccccc
**VVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFDGFLYGMDSRIERKPAEIMMLQYMQPLMIPQPLLVPTQFHHPLALSYYV**
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MAVVSKILNVWCENFEIVMRFLDKLLNCFNVLSIDTEFPGFLRNTPRNAPAVESYNDLKFNVDCTHLIQLGITLSDKEGKISYTFEFNFSDFDLKKDLHAGDSIQLLKDSGLDFDKIRKDGIPRCVFAPRFLEVLSKHRENLKWVTFHGLYDVAYLVKIFTNDALPPTAEAFSGVAALFFQSVFDIKVVAGYCQGLQGLKLGLSKLARILNVKRHGGAHHAGSDSLLTAAVFAEMKNRYELEESAFDGFLYGMDSRIERKPAEIMMLQYMQPLMIPQPLLVPTQFHHPLALSYYVPA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
CCR4-NOT transcription complex subunit 7 Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression.probableA4II96
CCR4-NOT transcription complex subunit 8 Ubiquitous transcription factor required for a diverse set of processes. The CCR4-NOT complex functions as general transcription regulation complex.probableQ9D8X5
CCR4-NOT transcription complex subunit 8 Ubiquitous transcription factor required for a diverse set of processes. The CCR4-NOT complex functions as general transcription regulation complex.probableQ9UFF9

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1UOC, chain A
Confidence level:very confident
Coverage over the Query: 4-256
View the alignment between query and template
View the model in PyMOL