Query 038952
Match_columns 234
No_of_seqs 137 out of 1253
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.9 1.8E-25 6E-30 200.7 9.5 188 22-214 74-302 (320)
2 3v5u_A Uncharacterized membran 99.4 5.6E-13 1.9E-17 119.4 7.1 115 100-216 4-146 (320)
3 2knc_A Integrin alpha-IIB; tra 16.6 2.1E+02 0.0071 18.3 4.1 13 60-72 16-28 (54)
4 2lq1_A De novo designed antifr 12.0 25 0.00087 18.6 -1.1 14 131-144 9-22 (26)
5 1tc3_C Protein (TC3 transposas 10.0 1.1E+02 0.0038 17.0 1.2 16 122-137 23-38 (51)
6 4ev6_A Magnesium transport pro 9.7 7.9E+02 0.027 20.7 7.6 27 24-50 272-300 (339)
7 3o7q_A L-fucose-proton symport 9.0 6.2E+02 0.021 21.0 6.2 24 119-142 45-68 (438)
8 1jko_C HIN recombinase, DNA-in 8.4 1.6E+02 0.0055 16.6 1.6 17 121-137 22-38 (52)
9 2klu_A T-cell surface glycopro 8.2 1.4E+02 0.0048 20.0 1.2 15 2-16 22-37 (70)
10 2l8s_A Integrin alpha-1; trans 7.3 4.4E+02 0.015 16.7 3.3 30 197-226 18-49 (54)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.92 E-value=1.8e-25 Score=200.65 Aligned_cols=188 Identities=13% Similarity=0.165 Sum_probs=143.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhccccccc------------cccchhhHHHHHHHHHHHHHHHHHHHhhcccccC
Q 038952 22 SAVASVNSGLLLMAVMALLFLAVLLATHTELHFE------------KSKLALSRFCSCAMLVAYAAYLYFQLKSQWQLCD 89 (234)
Q Consensus 22 ~~~~~~~~~lLiL~~~aLi~P~~~~~~~~~~~~~------------~~~~~lS~~~giiLL~~y~~yl~~~~~~~~~~~~ 89 (234)
--.+...|+++++|+++++.|... +...++|.. ..++ ++|.+|++++..|+.|++|++++|++..|
T Consensus 74 ivGSni~nillvlG~~~li~p~~v-~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~~~~ 151 (320)
T 3v5u_A 74 AIGSCICNIGLVLGLSAIISPIIV-DKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSAEIE 151 (320)
T ss_dssp HHHHHHHHHHTHHHHHHHHSCBCC-CHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC---
T ss_pred ecchHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344566777777777777777655 222233321 2345 99999999999999999999999876433
Q ss_pred cc-CCcCcchHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHhcCCCchhhhhhhhhhccCh-----HHHHHHHhCCC----
Q 038952 90 QE-EIPEISKRESIIWLFILTNWISILSEYFVDAVEGASMELKMPVAFISIILLPIVGNA-----GAIMFTMKDKL---- 159 (234)
Q Consensus 90 ~~-~~~~~~~~~~~~~Lv~g~~~l~~~a~~lV~s~~~ia~~lgise~~IGltivalvgts-----tsi~aA~k~~~---- 159 (234)
+| ++++.+.++.+.+++++++++..+||++|++++.+++.+|+||.++|+|++|+ +|+ +++.+|+||+.
T Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~-gtslPE~~~sv~aa~~g~~~lai 230 (320)
T 3v5u_A 152 ENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAF-GTSLPELMVSLAAAKRNLGGMVL 230 (320)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHH-HHTHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHH-HhccHHHHHHHHHHHcCCCcHHH
Confidence 22 23445678889999999999999999999999999999999999999999999 565 99999999997
Q ss_pred --------cceeeeeeee-cCCceeecccHHHHHHH---------HhcCCccchHHHHHHHHHHHH-HHHHHhc
Q 038952 160 --------VPFSIVIGRI-MGRPIDLNLQLFETATL---------MITEENSNYFKGLMLVFCYVI-VAASFLV 214 (234)
Q Consensus 160 --------~pilvvig~~-~~~p~~l~~~~~~~~~l---------~~~~~~~~~~eG~~Ll~~Y~~-~~~~~~~ 214 (234)
+|+++++|.. ..+|+.++ .+|...+ +.+|+|++|+||.+|++.|+. |....+.
T Consensus 231 g~iiGS~ifn~~~v~g~~~li~p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~ll~~Y~~~y~~~~~~ 302 (320)
T 3v5u_A 231 GNVIGSNIADIGGALAVGSLFMHLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRMG 302 (320)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHSCBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHhHHHHHHHHHHHHHHhhccccch--HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888875 34676653 4343111 128999999999999999999 9866554
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.37 E-value=5.6e-13 Score=119.37 Aligned_cols=115 Identities=13% Similarity=0.198 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhHhhHHHHHHhcCCCchhhhhhhhhhccCh-----HHHHHHHhCCC------------cce
Q 038952 100 ESIIWLFILTNWISILSEYFVDAVEGASMELKMPVAFISIILLPIVGNA-----GAIMFTMKDKL------------VPF 162 (234)
Q Consensus 100 ~~~~~Lv~g~~~l~~~a~~lV~s~~~ia~~lgise~~IGltivalvgts-----tsi~aA~k~~~------------~pi 162 (234)
..+.++++|++++..++|+++++++.+|+++|+||.++|+|++|+ ||| +++.|++||+. +|+
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~-GTSlPEl~vsi~A~~~g~~diaiGnivGSni~ni 82 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAI-GTSLPEILTSAYASYMHAPGISIGNAIGSCICNI 82 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HcccHHHHHHHHHHhCCCCceeeeeecchHHHHH
Confidence 356788899999999999999999999999999999999999999 787 99999999997 899
Q ss_pred eeeeeee-cCCceeecc----cHHHHH----HH-Hh-cCCccchHHHHHHHHHHHHHHHHHhccc
Q 038952 163 SIVIGRI-MGRPIDLNL----QLFETA----TL-MI-TEENSNYFKGLMLVFCYVIVAASFLVLE 216 (234)
Q Consensus 163 lvvig~~-~~~p~~l~~----~~~~~~----~l-~~-~~~~~~~~eG~~Ll~~Y~~~~~~~~~~~ 216 (234)
++++|.. ..+|+...- |...+. .+ .+ .|+ ++|.||.+|+..|+.|....+...
T Consensus 83 llvlG~~~li~p~~v~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~ 146 (320)
T 3v5u_A 83 GLVLGLSAIISPIIVDKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNG 146 (320)
T ss_dssp HTHHHHHHHHSCBCCCHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999876 345654421 111111 11 11 677 999999999999999987666543
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.62 E-value=2.1e+02 Score=18.25 Aligned_cols=13 Identities=8% Similarity=0.072 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHH
Q 038952 60 ALSRFCSCAMLVA 72 (234)
Q Consensus 60 ~lS~~~giiLL~~ 72 (234)
..|...|++++.+
T Consensus 16 i~svl~GLllL~l 28 (54)
T 2knc_A 16 LVGVLGGLLLLTI 28 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555556666544
No 4
>2lq1_A De novo designed antifreeze peptide 3; AFP, antifreeze protein; NMR {Synthetic}
Probab=11.98 E-value=25 Score=18.63 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.6
Q ss_pred CCCchhhhhhhhhh
Q 038952 131 KMPVAFISIILLPI 144 (234)
Q Consensus 131 gise~~IGltival 144 (234)
|+|.+..|+|++|+
T Consensus 9 glstaltgftlvpv 22 (26)
T 2lq1_A 9 GLSTALTGFTLVPV 22 (26)
T ss_dssp HHHHHHHHTTHHHH
T ss_pred cceehccccEEEec
Confidence 45677888888886
No 5
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=9.97 E-value=1.1e+02 Score=17.05 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.2
Q ss_pred hHHHHHHhcCCCchhh
Q 038952 122 AVEGASMELKMPVAFI 137 (234)
Q Consensus 122 s~~~ia~~lgise~~I 137 (234)
+..++|+.+|+|..-+
T Consensus 23 s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 6889999999997644
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=9.70 E-value=7.9e+02 Score=20.66 Aligned_cols=27 Identities=4% Similarity=0.039 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHhhhhcc
Q 038952 24 VASVNSGLLLMAVMALL--FLAVLLATHT 50 (234)
Q Consensus 24 ~~~~~~~lLiL~~~aLi--~P~~~~~~~~ 50 (234)
..+++.++-+|++.+.+ .|+.+..-.+
T Consensus 272 s~~~N~~mk~LTiit~IflP~T~IaGiyG 300 (339)
T 4ev6_A 272 NIKMNQIMKILTMVTTIFAVPMWITGIYG 300 (339)
T ss_dssp HHHHHHHHHHHHHHHHHSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566777777776554 3566554433
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.04 E-value=6.2e+02 Score=20.96 Aligned_cols=24 Identities=4% Similarity=-0.180 Sum_probs=16.4
Q ss_pred hHhhHHHHHHhcCCCchhhhhhhh
Q 038952 119 FVDAVEGASMELKMPVAFISIILL 142 (234)
Q Consensus 119 lV~s~~~ia~~lgise~~IGltiv 142 (234)
.--....+.+++|+|+.-+|++..
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~ 68 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQS 68 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 333455677888888888887643
No 8
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=8.40 E-value=1.6e+02 Score=16.64 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=13.6
Q ss_pred hhHHHHHHhcCCCchhh
Q 038952 121 DAVEGASMELKMPVAFI 137 (234)
Q Consensus 121 ~s~~~ia~~lgise~~I 137 (234)
.+..++|+.+|+|..-+
T Consensus 22 ~s~~~ia~~lgvs~~Tv 38 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTL 38 (52)
T ss_dssp CCHHHHHHTTSCCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 47889999999987643
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=8.21 E-value=1.4e+02 Score=20.03 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=9.7
Q ss_pred cchhHhhhhhh-cccc
Q 038952 2 LVLGSAFFCGA-LVNA 16 (234)
Q Consensus 2 LvlG~~~l~gg-~r~~ 16 (234)
+..|+|.+.+- .||+
T Consensus 22 l~~glcI~ccvkcrhR 37 (70)
T 2klu_A 22 LFIGLGIFFSVRSRHR 37 (70)
T ss_dssp HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhhHHHHH
Confidence 45678888666 5553
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.27 E-value=4.4e+02 Score=16.70 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHH--HHHHHHHHHhcccCccccccccc
Q 038952 197 KGLMLVF--CYVIVAASFLVLEDPTSLRKLFA 226 (234)
Q Consensus 197 eG~~Ll~--~Y~~~~~~~~~~~~~~~~~~~~~ 226 (234)
-|.++++ +|++|=.+||=..-+++.+++-|
T Consensus 18 ~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~~ 49 (54)
T 2l8s_A 18 AGLLLLMLLILALWKIGFFKRPLKKKMEKLEH 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSCCCCC---
T ss_pred HHHHHHHHHHHHHHHcCcccCCCcchhhHHhh
Confidence 4555543 58888889888777777777654
Done!