Query 038952
Match_columns 234
No_of_seqs 137 out of 1253
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 13.4 86 0.0063 20.1 3.6 15 67-81 27-41 (91)
2 d1biaa1 a.4.5.1 (A:1-63) Bioti 9.7 51 0.0037 19.7 1.2 17 121-137 20-36 (63)
3 d1j5ya1 a.4.5.1 (A:3-67) Putat 8.4 62 0.0045 19.3 1.2 15 122-136 24-38 (65)
4 d1gdta1 a.4.1.2 (A:141-183) ga 7.7 68 0.005 18.1 1.0 14 122-135 20-33 (43)
5 d1ijwc_ a.4.1.2 (C:) HIN recom 7.1 80 0.0059 17.9 1.2 15 122-136 23-37 (47)
6 d1uxda_ a.35.1.5 (A:) Fructose 6.8 1.1E+02 0.0081 18.0 1.8 20 122-141 2-21 (59)
7 d2cyya1 a.4.5.32 (A:5-64) Puta 6.2 94 0.0069 18.0 1.2 16 122-137 19-34 (60)
8 d1i1ga1 a.4.5.32 (A:2-61) LprA 6.1 94 0.0069 18.1 1.2 16 122-137 19-34 (60)
9 d2hsga1 a.35.1.5 (A:2-58) Gluc 6.1 1.4E+02 0.0099 17.5 2.0 19 122-140 3-21 (57)
10 d1efaa1 a.35.1.5 (A:2-60) Lac 5.5 1.6E+02 0.012 17.4 2.0 20 122-141 4-23 (59)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=13.44 E-value=86 Score=20.09 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 038952 67 CAMLVAYAAYLYFQL 81 (234)
Q Consensus 67 iiLL~~y~~yl~~~~ 81 (234)
++.+...++.+++.+
T Consensus 27 iv~v~V~~~~~~~~~ 41 (91)
T d1fftb2 27 IVVIPAILMAVGFAW 41 (91)
T ss_dssp TTTTHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhhe
Confidence 334444444444433
No 2
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.74 E-value=51 Score=19.70 Aligned_cols=17 Identities=29% Similarity=0.151 Sum_probs=13.9
Q ss_pred hhHHHHHHhcCCCchhh
Q 038952 121 DAVEGASMELKMPVAFI 137 (234)
Q Consensus 121 ~s~~~ia~~lgise~~I 137 (234)
-+++++|+.+|+|+.-|
T Consensus 20 ~s~~eLa~~l~vS~~ti 36 (63)
T d1biaa1 20 HSGEQLGETLGMSRAAI 36 (63)
T ss_dssp BCHHHHHHHHTSCHHHH
T ss_pred CCHHHHHHHHCcCHHHH
Confidence 47889999999998654
No 3
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.37 E-value=62 Score=19.26 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=12.5
Q ss_pred hHHHHHHhcCCCchh
Q 038952 122 AVEGASMELKMPVAF 136 (234)
Q Consensus 122 s~~~ia~~lgise~~ 136 (234)
+++++|+.+|+|+.-
T Consensus 24 s~~~La~~l~VS~~T 38 (65)
T d1j5ya1 24 SGAQLAEELSVSRQV 38 (65)
T ss_dssp CHHHHHHHHTSCHHH
T ss_pred cHHHHHHHHCCCHHH
Confidence 678899999999864
No 4
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=7.72 E-value=68 Score=18.14 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=11.0
Q ss_pred hHHHHHHhcCCCch
Q 038952 122 AVEGASMELKMPVA 135 (234)
Q Consensus 122 s~~~ia~~lgise~ 135 (234)
++.+||+++||+.+
T Consensus 20 gat~IAk~lgI~R~ 33 (43)
T d1gdta1 20 GASHISKTMNIARS 33 (43)
T ss_dssp CHHHHHHHHTCCHH
T ss_pred CHHHHHHHHCCCHH
Confidence 57788999988754
No 5
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=7.12 E-value=80 Score=17.89 Aligned_cols=15 Identities=7% Similarity=0.064 Sum_probs=11.7
Q ss_pred hHHHHHHhcCCCchh
Q 038952 122 AVEGASMELKMPVAF 136 (234)
Q Consensus 122 s~~~ia~~lgise~~ 136 (234)
+..++|+.+|+|..-
T Consensus 23 s~~~iA~~~gVSr~T 37 (47)
T d1ijwc_ 23 PRQQLAIIFGIGVST 37 (47)
T ss_dssp CHHHHHHHHTCCHHH
T ss_pred CHHHHHHHHCcCHHH
Confidence 577888899988653
No 6
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=1.1e+02 Score=18.02 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=16.2
Q ss_pred hHHHHHHhcCCCchhhhhhh
Q 038952 122 AVEGASMELKMPVAFISIIL 141 (234)
Q Consensus 122 s~~~ia~~lgise~~IGlti 141 (234)
++.++|+..|+|.+-+.-.+
T Consensus 2 Tl~diA~~agvS~sTVSrvL 21 (59)
T d1uxda_ 2 KLDEIARLAGVSRTTASYVI 21 (59)
T ss_dssp CHHHHHHHHTSCTTHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 46789999999988877765
No 7
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.18 E-value=94 Score=18.00 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=13.2
Q ss_pred hHHHHHHhcCCCchhh
Q 038952 122 AVEGASMELKMPVAFI 137 (234)
Q Consensus 122 s~~~ia~~lgise~~I 137 (234)
+..++|+.+|+|+.-+
T Consensus 19 s~~eiA~~l~ls~~~v 34 (60)
T d2cyya1 19 PLREISKITGLAESTI 34 (60)
T ss_dssp CHHHHHHHHCSCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 6788999999988755
No 8
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=6.12 E-value=94 Score=18.11 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=13.1
Q ss_pred hHHHHHHhcCCCchhh
Q 038952 122 AVEGASMELKMPVAFI 137 (234)
Q Consensus 122 s~~~ia~~lgise~~I 137 (234)
+..++|+.+|+|+..+
T Consensus 19 s~~~lA~~~gls~~~v 34 (60)
T d1i1ga1 19 PFTEIAKKLGISETAV 34 (60)
T ss_dssp CHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 6788999999988765
No 9
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=6.12 E-value=1.4e+02 Score=17.49 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.0
Q ss_pred hHHHHHHhcCCCchhhhhh
Q 038952 122 AVEGASMELKMPVAFISII 140 (234)
Q Consensus 122 s~~~ia~~lgise~~IGlt 140 (234)
++.++|+..|+|.+-+.-.
T Consensus 3 Ti~dvA~~agvS~~TVSr~ 21 (57)
T d2hsga1 3 TIYDVAREASVSMATVSRV 21 (57)
T ss_dssp CHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 4678888888887766554
No 10
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.46 E-value=1.6e+02 Score=17.35 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=14.8
Q ss_pred hHHHHHHhcCCCchhhhhhh
Q 038952 122 AVEGASMELKMPVAFISIIL 141 (234)
Q Consensus 122 s~~~ia~~lgise~~IGlti 141 (234)
++.++|+..|+|.+-+.-.+
T Consensus 4 Ti~diA~~agvS~sTVSr~l 23 (59)
T d1efaa1 4 TLYDVAEYAGVSYQTVSRVV 23 (59)
T ss_dssp CHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 46788888888887766553
Done!