BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038954
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95563|MPC2_HUMAN Mitochondrial pyruvate carrier 2 OS=Homo sapiens GN=MPC2 PE=1 SV=1
Length = 127
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 26/90 (28%)
Query: 1 IANKLLTFWNHPTGPKTIHFWAPTFKWGISIANIADF----------------------S 38
+ KL +NHP GP+T+ FWAP KWG+ A +AD S
Sbjct: 24 LPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWS 83
Query: 39 NYNM----KNWNLFIVNFAMARTGLYQLSR 64
Y++ KNW+LF VNF + G QL R
Sbjct: 84 RYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113
>sp|P38718|MPC2_RAT Mitochondrial pyruvate carrier 2 OS=Rattus norvegicus GN=Mpc2 PE=2
SV=1
Length = 127
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 26/87 (29%)
Query: 9 WNHPTGPKTIHFWAPTFKWGISIANIADF----------------------SNYNM---- 42
+NHP GP+T+ FWAP KWG+ A +AD S Y++
Sbjct: 32 YNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIP 91
Query: 43 KNWNLFIVNFAMARTGLYQLSRKIKQN 69
KNW+LF VNF + G QL R K N
Sbjct: 92 KNWSLFAVNFFVGSAGASQLFRIWKYN 118
>sp|Q9D023|MPC2_MOUSE Mitochondrial pyruvate carrier 2 OS=Mus musculus GN=Mpc2 PE=1 SV=1
Length = 127
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 26/82 (31%)
Query: 9 WNHPTGPKTIHFWAPTFKWGISIANIADF----------------------SNYNM---- 42
+NHP GP+T+ FWAP KWG+ A +AD S Y++
Sbjct: 32 YNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIP 91
Query: 43 KNWNLFIVNFAMARTGLYQLSR 64
KNW+LF VNF + G QL R
Sbjct: 92 KNWSLFAVNFFVGSAGASQLFR 113
>sp|Q5R4Z3|MPC2_PONAB Mitochondrial pyruvate carrier 2 OS=Pongo abelii GN=MPC2 PE=2 SV=1
Length = 127
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 26/90 (28%)
Query: 1 IANKLLTFWNHPTGPKTIHFWAPTFKWGISIANIADF----------------------S 38
+ KL +NHP GP+T+ FWAP K G+ A +AD S
Sbjct: 24 LPEKLRPLYNHPAGPRTVFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWS 83
Query: 39 NYNM----KNWNLFIVNFAMARTGLYQLSR 64
Y++ KNW+LF VNF + G QL R
Sbjct: 84 RYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113
>sp|Q09896|MPC1_SCHPO Probable mitochondrial pyruvate carrier 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC24B11.09 PE=3
SV=1
Length = 118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 8 FWNHPTGPKTIHFWAPTFKWGISIANIADFSN 39
FWNHP GPKT+HFWAP KW + ++ I D++
Sbjct: 9 FWNHPAGPKTVHFWAPAMKWTLVLSGIGDYAR 40
>sp|P38857|MPC2_YEAST Mitochondrial pyruvate carrier 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YHR162W PE=1 SV=1
Length = 129
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 8 FWNHPTGPKTIHFWAPTFKWGISIANIADF 37
FW TGPKT+HFWAPT KWG+ A +D
Sbjct: 13 FWQSETGPKTVHFWAPTLKWGLVFAGFSDM 42
>sp|P53311|MPC3_YEAST Mitochondrial pyruvate carrier 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FMP43 PE=1 SV=1
Length = 146
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 26/83 (31%)
Query: 8 FWNHPTGPKTIHFWAPTFKWGISIANIADF----------SNYNM--------------- 42
FWN TGPKT+HFWAPT KWG+ A + D N ++
Sbjct: 13 FWNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIK 72
Query: 43 -KNWNLFIVNFAMARTGLYQLSR 64
KN+ L VNF + T Y L+R
Sbjct: 73 PKNYLLASVNFFLGCTAGYHLTR 95
>sp|O01578|MPC1_CAEEL Probable mitochondrial pyruvate carrier 1 OS=Caenorhabditis elegans
GN=F53F10.3 PE=3 SV=2
Length = 133
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 26/82 (31%)
Query: 9 WNHPTGPKTIHFWAPTFKWGISIANIADFSNYNMK------------------------- 43
WNH GPKT+ FWAPT KW + A +AD + K
Sbjct: 31 WNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITP 90
Query: 44 -NWNLFIVNFAMARTGLYQLSR 64
N+ L VNF + TGL QL R
Sbjct: 91 INYYLSSVNFFVMCTGLAQLCR 112
>sp|Q7KSC4|MPC1_DROME Mitochondrial pyruvate carrier 1 OS=Drosophila melanogaster
GN=Mpc1 PE=3 SV=1
Length = 107
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 17 TIHFWAPTFKWGISIANIAD 36
+ HFW P WGI +A +AD
Sbjct: 21 STHFWGPVANWGIPVAALAD 40
>sp|P0DKB6|MPC1L_HUMAN Mitochondrial pyruvate carrier 1-like protein OS=Homo sapiens
GN=MPC1L PE=2 SV=1
Length = 136
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 17 TIHFWAPTFKWGISIANIADF 37
+ HFW P F WG+ +A D
Sbjct: 26 STHFWGPAFSWGLPLAAFKDM 46
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,067,946
Number of Sequences: 539616
Number of extensions: 681883
Number of successful extensions: 1893
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1876
Number of HSP's gapped (non-prelim): 12
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)