Query 038954
Match_columns 69
No_of_seqs 112 out of 387
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1589 Uncharacterized conser 100.0 3.5E-41 7.7E-46 224.4 5.0 67 3-69 8-100 (118)
2 PF03650 MPC: Uncharacterised 100.0 4E-39 8.7E-44 215.2 4.4 69 1-69 2-96 (119)
3 KOG1590 Uncharacterized conser 99.9 7.1E-28 1.5E-32 163.0 3.5 67 3-69 9-104 (132)
4 COG3926 zliS Lysozyme family p 71.1 6.3 0.00014 29.7 3.6 40 30-69 211-251 (252)
5 PF14795 Leucyl-specific: Leuc 52.1 5.9 0.00013 23.7 0.4 13 9-23 44-56 (56)
6 PF06454 DUF1084: Protein of u 26.8 73 0.0016 23.5 2.8 25 42-66 26-50 (281)
7 PF05285 SDA1: SDA1; InterPro 20.2 95 0.0021 23.3 2.4 17 51-67 19-35 (324)
8 KOG4193 G protein-coupled rece 19.8 1.2E+02 0.0025 25.2 3.0 22 46-67 480-501 (610)
9 COG1726 NqrA Na+-transporting 18.0 67 0.0014 26.1 1.2 15 11-25 216-232 (447)
10 PF15588 Imm7: Immunity protei 15.9 18 0.00039 23.4 -2.1 19 30-49 19-37 (115)
No 1
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-41 Score=224.38 Aligned_cols=67 Identities=57% Similarity=1.056 Sum_probs=64.9
Q ss_pred hHHhHHHcCCCCCceeeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHHHHH
Q 038954 3 NKLLTFWNHPTGPKTIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFIVNFAMAR 56 (69)
Q Consensus 3 ~~~~~~~~~paGpkTvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~~~~ 56 (69)
+++|++|||||||||||||||++|||||+|||+|++|+| ||||+|||||+|+++
T Consensus 8 ~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~ 87 (118)
T KOG1589|consen 8 AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAI 87 (118)
T ss_pred HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHH
Confidence 689999999999999999999999999999999999976 999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 038954 57 TGLYQLSRKIKQN 69 (69)
Q Consensus 57 ~~~~ql~R~~~y~ 69 (69)
||+|||.|+++|+
T Consensus 88 tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 88 TGIYQLTRIANYQ 100 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999983
No 2
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=4e-39 Score=215.19 Aligned_cols=69 Identities=51% Similarity=0.901 Sum_probs=66.2
Q ss_pred ChhHHhHHHcCCCCCceeeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHHH
Q 038954 1 IANKLLTFWNHPTGPKTIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFIVNFAM 54 (69)
Q Consensus 1 ~~~~~~~~~~~paGpkTvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~~ 54 (69)
.++++|++||||+||||||||||++|||||||||+|++|+| ||||+||+||++|
T Consensus 2 ~~~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~ 81 (119)
T PF03650_consen 2 FPAKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFN 81 (119)
T ss_pred hhHHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHH
Confidence 36789999999999999999999999999999999999977 9999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 038954 55 ARTGLYQLSRKIKQN 69 (69)
Q Consensus 55 ~~~~~~ql~R~~~y~ 69 (69)
+++|+||++|+++|+
T Consensus 82 ~~~q~~Ql~R~~~y~ 96 (119)
T PF03650_consen 82 ATTQLYQLYRKLNYQ 96 (119)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 3
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=7.1e-28 Score=162.96 Aligned_cols=67 Identities=30% Similarity=0.515 Sum_probs=62.4
Q ss_pred hHHhHHHcCCCCCc---eeeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHH
Q 038954 3 NKLLTFWNHPTGPK---TIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFIVNFA 53 (69)
Q Consensus 3 ~~~~~~~~~paGpk---TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~ 53 (69)
.+++.+.+++-+++ |||||||++||||+||+|.||+++| ||||+||+||++
T Consensus 9 r~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~ 88 (132)
T KOG1590|consen 9 RRFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHAT 88 (132)
T ss_pred HHHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhh
Confidence 45678889999986 7999999999999999999999987 999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 038954 54 MARTGLYQLSRKIKQN 69 (69)
Q Consensus 54 ~~~~~~~ql~R~~~y~ 69 (69)
|+.+|++|++|.++|+
T Consensus 89 N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 89 NETAQLAQGSRFLNYN 104 (132)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 4
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=71.14 E-value=6.3 Score=29.70 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=34.8
Q ss_pred hhhhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 038954 30 SIANIADFSNY-NMKNWNLFIVNFAMARTGLYQLSRKIKQN 69 (69)
Q Consensus 30 viAgl~D~~r~-pP~N~~L~~~n~~~~~~~~~ql~R~~~y~ 69 (69)
.+.|+.|++.- .|-.|-|.++=++.++++++|+.|+++.+
T Consensus 211 ~~sG~~~~~~~~~P~~~ala~~~~A~~g~gl~~~~~~~~~~ 251 (252)
T COG3926 211 LLSGLYDLQNQLSPLSYALASAVLAIGGLGLWYFNRKVKHL 251 (252)
T ss_pred cccchhhcccCCCchHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 37788888874 49999999999999999999999998763
No 5
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=52.12 E-value=5.9 Score=23.70 Aligned_cols=13 Identities=54% Similarity=1.262 Sum_probs=8.5
Q ss_pred HcCCCCCceeeeccc
Q 038954 9 WNHPTGPKTIHFWAP 23 (69)
Q Consensus 9 ~~~paGpkTvhFWaP 23 (69)
-.|.-| |+|||-|
T Consensus 44 R~hedG--~~h~WKP 56 (56)
T PF14795_consen 44 RPHEDG--TLHFWKP 56 (56)
T ss_dssp EE-TTS--SEEEEEE
T ss_pred ccCCCC--eEeecCC
Confidence 344444 8999987
No 6
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=26.75 E-value=73 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 038954 42 MKNWNLFIVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 42 P~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
--+|.|++.-...+..+++|+.|..
T Consensus 26 ~~~~~La~iy~~v~~~aliQl~ri~ 50 (281)
T PF06454_consen 26 GLFYALAAIYLLVALVALIQLIRIQ 50 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhee
Confidence 5678999999999999999999964
No 7
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=20.16 E-value=95 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038954 51 NFAMARTGLYQLSRKIK 67 (69)
Q Consensus 51 n~~~~~~~~~ql~R~~~ 67 (69)
++.|++-+|+||||-++
T Consensus 19 ~V~~Aarsli~l~Rev~ 35 (324)
T PF05285_consen 19 GVMMAARSLINLFREVN 35 (324)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 67899999999999764
No 8
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=19.76 E-value=1.2e+02 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038954 46 NLFIVNFAMARTGLYQLSRKIK 67 (69)
Q Consensus 46 ~L~~~n~~~~~~~~~ql~R~~~ 67 (69)
.++.+|+.+..+-++|+.|...
T Consensus 480 ~ii~~Ni~~Fv~t~~~l~~~~~ 501 (610)
T KOG4193|consen 480 LIILVNIVMFVVTLKKLLRRLS 501 (610)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 7889999999999999998753
No 9
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=18.00 E-value=67 Score=26.07 Aligned_cols=15 Identities=53% Similarity=0.835 Sum_probs=11.6
Q ss_pred CCCCCc--eeeeccccc
Q 038954 11 HPTGPK--TIHFWAPTF 25 (69)
Q Consensus 11 ~paGpk--TvhFWaP~~ 25 (69)
||+|-- -+||-+|+.
T Consensus 216 hPaGl~gtHIHfi~pv~ 232 (447)
T COG1726 216 HPAGLPGTHIHFIAPVG 232 (447)
T ss_pred CCCCCCcceeEEecccc
Confidence 899953 379999975
No 10
>PF15588 Imm7: Immunity protein 7
Probab=15.90 E-value=18 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=13.8
Q ss_pred hhhhhhhhcccccchhHHHH
Q 038954 30 SIANIADFSNYNMKNWNLFI 49 (69)
Q Consensus 30 viAgl~D~~r~pP~N~~L~~ 49 (69)
..+|++| ....|+||+++.
T Consensus 19 ~~vG~AD-d~~~~~~yiilQ 37 (115)
T PF15588_consen 19 LMVGFAD-DEDGPKEYIILQ 37 (115)
T ss_pred EEEEEec-CCCCCceEEEEE
Confidence 4578888 566788888764
Done!