Query 038954
Match_columns 69
No_of_seqs 112 out of 387
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a5p_A Haemagglutinin I; lecti 34.8 9.3 0.00032 24.0 0.3 11 10-20 42-52 (104)
2 1q90_R Cytochrome B6-F complex 19.2 98 0.0034 16.9 2.6 33 34-66 6-38 (49)
3 2sas_A Sarcoplasmic calcium-bi 11.1 1.2E+02 0.004 17.6 1.6 21 4-24 164-184 (185)
4 1ci4_A Protein (barrier-TO-aut 10.7 1.4E+02 0.0046 18.4 1.8 18 1-18 3-20 (89)
5 1jb0_X Photosystem I subunit P 10.1 1.7E+02 0.0058 15.2 1.8 11 46-56 18-28 (35)
6 3hjr_A Extracellular serine pr 8.9 52 0.0018 24.6 -0.7 16 17-32 535-552 (600)
7 3mfq_A TROA, high-affinity zin 7.7 5.6E+02 0.019 17.3 4.4 49 18-66 103-152 (282)
8 3cx3_A Lipoprotein; zinc-bindi 7.7 5E+02 0.017 17.5 3.9 50 17-66 118-168 (284)
9 2amn_A Cathelicidin; linear he 7.7 1.5E+02 0.0052 14.4 0.9 14 54-67 11-24 (26)
10 3gi1_A LBP, laminin-binding pr 7.7 4.9E+02 0.017 17.7 3.9 51 17-67 120-171 (286)
No 1
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=34.81 E-value=9.3 Score=24.01 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=9.1
Q ss_pred cCCCCCceeee
Q 038954 10 NHPTGPKTIHF 20 (69)
Q Consensus 10 ~~paGpkTvhF 20 (69)
-++.||||+|-
T Consensus 42 fseigpktvhq 52 (104)
T 3a5p_A 42 FSEIGPKTVHQ 52 (104)
T ss_dssp EECCSCCCSSS
T ss_pred ehhcCCceeee
Confidence 46889999985
No 2
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=19.25 E-value=98 Score=16.86 Aligned_cols=33 Identities=15% Similarity=-0.078 Sum_probs=26.7
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 038954 34 IADFSNYNMKNWNLFIVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 34 l~D~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
.-||.|..==|++++.+-.++++.-++-+.|++
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 457777777789999999999888888887764
No 3
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=11.11 E-value=1.2e+02 Score=17.57 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=14.0
Q ss_pred HHhHHHcCCCCCceeeecccc
Q 038954 4 KLLTFWNHPTGPKTIHFWAPT 24 (69)
Q Consensus 4 ~~~~~~~~paGpkTvhFWaP~ 24 (69)
.++.++.++......|+|||+
T Consensus 164 ~~~~~~~s~~~~~~~~~~g~~ 184 (185)
T 2sas_A 164 LYYRLLTSPAADAGNTLMGQK 184 (185)
T ss_dssp HHHHHHHCSSCSGGGGGGTCC
T ss_pred HHHHHhcCCCCCCcccccccC
Confidence 456777776633457888886
No 4
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=10.69 E-value=1.4e+02 Score=18.35 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.6
Q ss_pred ChhHHhHHHcCCCCCcee
Q 038954 1 IANKLLTFWNHPTGPKTI 18 (69)
Q Consensus 1 ~~~~~~~~~~~paGpkTv 18 (69)
++++.|.|...|.|-|.|
T Consensus 3 ts~Kh~~Fv~EPmgeK~V 20 (89)
T 1ci4_A 3 TSQKHRDFVAEPMGEKPV 20 (89)
T ss_dssp SCHHHHHHHTSCCTTCCG
T ss_pred ccHHHHHHHhCCCCCCCc
Confidence 468899999999998877
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=10.08 E-value=1.7e+02 Score=15.18 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q 038954 46 NLFIVNFAMAR 56 (69)
Q Consensus 46 ~L~~~n~~~~~ 56 (69)
+|.++||.+++
T Consensus 18 llLaINflVAa 28 (35)
T 1jb0_X 18 LLLAINFLVAA 28 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57788887765
No 6
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=8.94 E-value=52 Score=24.56 Aligned_cols=16 Identities=13% Similarity=0.542 Sum_probs=13.2
Q ss_pred eeeecc--cccchhhhhh
Q 038954 17 TIHFWA--PTFKWGISIA 32 (69)
Q Consensus 17 TvhFWa--P~~kWglviA 32 (69)
|+|||| |.-+|-|-|.
T Consensus 535 s~~~wGE~~~G~WtL~V~ 552 (600)
T 3hjr_A 535 SNKFYGESAQGTWRLEVT 552 (600)
T ss_dssp ECTTTTCBCCEEEEEEEE
T ss_pred cccccCCCCCccEEEEEE
Confidence 789997 8889999764
No 7
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=7.69 E-value=5.6e+02 Score=17.35 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=40.9
Q ss_pred eeecccccchhhhhhhhhh-hcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 038954 18 IHFWAPTFKWGISIANIAD-FSNYNMKNWNLFIVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 18 vhFWaP~~kWglviAgl~D-~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
=|+|==..++...+.+|+| +.+.-|.|--.+.-|.--....+-+|-+.+
T Consensus 103 PHvWldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~ 152 (282)
T 3mfq_A 103 PHFWFSIPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWV 152 (282)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899888899999999999 666679999999999988888887776654
No 8
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=7.69 E-value=5e+02 Score=17.49 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=41.4
Q ss_pred eeeecccccchhhhhhhhhh-hcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 038954 17 TIHFWAPTFKWGISIANIAD-FSNYNMKNWNLFIVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 17 TvhFWaP~~kWglviAgl~D-~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
--|+|=-..++...+.+|+| +.+.-|.|--.+.-|.-.....+-+|-+.+
T Consensus 118 dPH~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~ 168 (284)
T 3cx3_A 118 DPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKF 168 (284)
T ss_dssp CCCGGGSHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899888899999999998 666779999999999988888887776654
No 9
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=7.66 E-value=1.5e+02 Score=14.41 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhh
Q 038954 54 MARTGLYQLSRKIK 67 (69)
Q Consensus 54 ~~~~~~~ql~R~~~ 67 (69)
+.....|.|+|.++
T Consensus 11 ~tv~ag~nly~aik 24 (26)
T 2amn_A 11 RTVIAGYNLYRAIK 24 (26)
T ss_dssp HHHHHHHSSSHHHH
T ss_pred EEEeehhHHHHHHh
Confidence 34445566666543
No 10
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=7.65 E-value=4.9e+02 Score=17.66 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=42.1
Q ss_pred eeeecccccchhhhhhhhhh-hcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 038954 17 TIHFWAPTFKWGISIANIAD-FSNYNMKNWNLFIVNFAMARTGLYQLSRKIK 67 (69)
Q Consensus 17 TvhFWaP~~kWglviAgl~D-~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~~ 67 (69)
--|+|==..++...+.+|+| +.+.-|.|--.+.-|.--....+-+|-+.++
T Consensus 120 dPHvWldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~ 171 (286)
T 3gi1_A 120 DPHTWTDPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYT 171 (286)
T ss_dssp CCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceecCHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999888899999999999 6666799999999999888888887766543
Done!