BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038955
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 204 NIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPKV 259
N A+V+ + + +H A ++ E++KLL+ DV+ +V
Sbjct: 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85
Query: 260 FKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319
K +++ G AD+N KD+ GRT LH AA+ V+ L+SKGA + + SDG+T + + R
Sbjct: 86 VKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 219 IHKALDSDDIELLKLLLDVSNVTXXXXXXXXXXXXXCSPKVFKEVLNMGL---ADLNLKD 275
+H A ++ E++KLLL + KE++ + L AD N KD
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 276 ARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319
+ GRT LH AA+ ++ LLSKGA + + SDG+T + + R
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 260 FKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAV 315
K++L G AD N D+ GRT LH AA+ ++ LLSKGA + SDG+T +
Sbjct: 20 VKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 204 NIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPKV 259
N A+V+ + + +H A E++KLL+ DV+ ++
Sbjct: 26 NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 85
Query: 260 FKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319
K +++ G AD+N KD+ GRT LH AAK ++ L+SKGA + + SDG+T + + R
Sbjct: 86 VKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 204 NIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVSNVTXXXXXXXXXXXXXCSPKVFKEV 263
N A+V+ + + +H A ++ E++KLLL + KEV
Sbjct: 26 NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 85
Query: 264 LNMGL---ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319
+ + L AD N KD+ G+T LH+AA+ V+ LLS+GA + + SDG+T + + R
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYI 328
AD+N K G + LH AA++ ++ LL GA +E +SDG T +AI +R+ YI
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL----GYI 390
Query: 329 EAT 331
T
Sbjct: 391 SVT 393
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYI 328
A+ NL G T LH+AA+ ++ LL K A + T G T + +
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV----------- 152
Query: 329 EATKQGQGTNKDRLCIDVLEKEMRRNSMSENLAMPSEVMDDH 370
A K G K R+ +LE++ N+ +N P V H
Sbjct: 153 -AAKYG----KVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 IHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPKVFKEVLNMGLADLNLK 274
+H A + +E++KLLL DV+ +V K +L G AD+N K
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK 64
Query: 275 DARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
D GRT LH+AA+ V+ LL GA + +G+T + + R
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 219 IHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPKVFKEVLNMGLADLNLK 274
+H A + +E++KLLL DV+ +V K +L G AD+N K
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK 97
Query: 275 DARGRTVLHVAAKRKEPAVLVTLLSKGA 302
D GRT LH+AA+ V+ LL GA
Sbjct: 98 DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 278 GRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
GRT LH+AA+ V+ LL GA + +G+T + + R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 258 KVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAI 317
+V K +L G AD+N KD GRT LH+AA+ V+ LL GA + +G+T + +
Sbjct: 16 EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 74
Query: 318 CRR 320
R
Sbjct: 75 AAR 77
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 219 IHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPKVFKEVLNMGLADLNLK 274
+H A + +E++KLLL DV+ +V K +L G AD+N K
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK 64
Query: 275 DARGRTVLHVAAKRKEPAVLVTLLSKGA 302
D GRT LH+AA+ V+ LL GA
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 278 GRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
GRT LH+AA+ V+ LL GA + +G+T + + R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 261 KEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
K++L+ G AD+N + G T LH+AAK ++ LL+KGA + + DG T + ++
Sbjct: 26 KKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 278 GRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
G T LH AAK + LLSKGA + + DG T + + +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D+ G T LH+AAKR ++ LL GA + GKTA I
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD+N KD+ G T LH+AA+R ++ LL GA + + S G T + + +
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
AD+N +D G T LH+AA ++ LL GA + S G T + + R
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR 89
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
AD+N +DA G T LH+AA R ++ LL GA + GKTA I
Sbjct: 104 ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
AD+N D +G T LH+AA P ++ LL GA + +DG T + +
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 257 PKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVA 316
P++ + +L G AD+N +D G T LH+AA ++ LL GA + + G T +
Sbjct: 60 PEIVEVLLKHG-ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLH 118
Query: 317 IC 318
+
Sbjct: 119 LA 120
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD+N KD G T LH+AA+ ++ LL GA + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
AD+N KD G T LH+AA+ ++ LL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
EVL AD+N KD G T LH+AA+ ++ LL GA + GKT
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD+N KD G T LH+AA+ ++ LL GA + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
AD+N KD G T LH+AA+ ++ LL GA + DG T + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD+N KD G T LH+AA+ ++ LL GA + GKT + R
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIR 143
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD+N KD G T LH+AA+ ++ LL GA + DG T + + R
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N KD G T LH+AA+ ++ LL GA + GKTA I
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
AD+N KD G T LH+AA+ ++ LL GA + DG T + + R
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N KD G T LH+AA R ++ LL GA + GKTA I
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
EVL AD+N D G T LH+AA ++ LL GA + +G T
Sbjct: 64 EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 10 WLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYE 69
+ D +VV+G + +R++L+ S +FR LFN N S P V +
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN--NSRSAVVELP----------AAVQPQ 80
Query: 70 AFNDILYYLYTGK 82
+F IL + YTG+
Sbjct: 81 SFQQILSFCYTGR 93
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAI 317
AD+N KD G T LH+AA+ ++ LL GA + GKTA I
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 203 ANIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPK 258
AN A+V+ A + +H A + +E++++LL DV+ V +
Sbjct: 35 ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 259 VFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
+ + +L G AD+N D G T LH+AA ++ LL GA + GKTA I
Sbjct: 95 IVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
AD+N D G T LH+AAKR ++ LL GA + + S G+T
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D+ GRT LH+AA ++ LL GA + GKTA I
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D+ G T LH+AAK ++ LL GA + GKTA I
Sbjct: 97 EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD++ D G T LH+AA ++ LL GA + SDG T + + +
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 7 KETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKV 66
K+ D I VEG+ +RS+L+ S +F + DG ++ P+ +V
Sbjct: 26 KDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPE----------EV 75
Query: 67 GYEAFNDILYYLYTGK---TKASPPEVSACVDDACAHS 101
+ F ++ + YT K +K + EV CV+ H+
Sbjct: 76 TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN 113
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 203 ANIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPK 258
AN A+V+ ++ +H +++ +E++++LL DV+ +
Sbjct: 35 ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLE 94
Query: 259 VFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
+ + +L G AD+N D +G T LH+AA+ ++ LL GA + GKTA I
Sbjct: 95 IVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N +D GRT LH+AA ++ LL GA + GKTA I
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
AD+N D G T LH+AAKR ++ LL GA + G+T
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT 82
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
AD+N D +G T LH+AA ++ LL GA + +DG T + +
Sbjct: 38 ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D G T LH+AA ++ LL GA + GKTA I
Sbjct: 64 EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAF 71
D I+VEG+ +RS+L+ SQ+F+ LF G+V + + Y + V EA
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLF---TSGAVVDQQNVYEI------DFVSAEAL 77
Query: 72 NDILYYLYTGKTKASPPEVS 91
++ + YT S V
Sbjct: 78 TALMDFAYTATLTVSTANVG 97
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRM 321
EVL AD+N D+ G T LH+AA R V+ LL GA + +G T + + +
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Query: 322 TR 323
Sbjct: 124 GH 125
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D G T LH+AA ++ LL GA + GKTA I
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D G T LH+AAK ++ LL GA + GKTA I
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
EVL AD+N D G T LH+AA ++ LL GA + +DG T + + +
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 274 KDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDG 311
KDA G T LH+AAK+ V+ LLS G DG
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N KD G T LH+AA ++ LL GA + GKTA I
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
AD+N D G T LH+AAK ++ LL GA + + G T + +
Sbjct: 38 ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGAC-TSETTSDGKTAVAICRRMTRRKDY 327
AD+N++ RG+T L +A ++K ++ LL + ++T SDGKTA+ + + +K
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Query: 328 IEATKQGQGTNKDRLCIDVLEKEMRRN 354
K+G T+ C D++ RRN
Sbjct: 290 ELLCKRGASTD----CGDLV-MTARRN 311
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 196 KSNQESE-----ANIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXX 246
++ Q+ E AN A+V+ A ++ +H A +E++++LL DV+ +
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGST 82
Query: 247 XXXXXXXXCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSE 306
++ + +L G AD+N D G T LH+AA ++ LL GA +
Sbjct: 83 PLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 307 TTSDGKTAVAIC 318
GKTA I
Sbjct: 142 QDKFGKTAFDIS 153
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGAC-TSETTSDGKTAVAICRRMTRRKDY 327
AD+N++ RG+T L +A ++K ++ LL + ++T SDGKTA+ + + +K
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 328 IEATKQGQGTN 338
K+G T+
Sbjct: 270 ELLCKRGASTD 280
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAF 71
D I+VEG+ +RS+L+ SQ+F+ LF G+V + + Y + V EA
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLF---TSGAVVDQQNVYEID------FVSAEAL 87
Query: 72 NDILYYLYTGKTKASPPEVS 91
++ + YT S V
Sbjct: 88 TALMDFAYTATLTVSTANVG 107
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 196 KSNQESE-----ANIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXX 246
++ Q+ E AN A+V+ A ++ +H A +E++++LL DV+ +
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGST 82
Query: 247 XXXXXXXXCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSE 306
++ + +L G AD+N D G T LH+AA ++ LL GA +
Sbjct: 83 PLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 307 TTSDGKTAVAIC 318
GKTA I
Sbjct: 142 QDKFGKTAFDIS 153
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D GRT LH+AA ++ LL GA + GKTA I
Sbjct: 64 EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
AD+N D G T LH+AAKR ++ LL GA + + G+T
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT 82
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
AD+N +D G T LH+AA R ++ LL GA + GKTA I
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.3 bits (72), Expect = 0.50, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAI 317
AD+ KD G T LH+AA+ V+ LL GA GKTA I
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAI 317
AD+ KD G T LH+AA+ V+ LL GA + GKTA I
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYI 328
L+ K A G T LH AA +P L LL A G+TA+ I R+ K+
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK-KHHKECE 275
Query: 329 EATKQGQ-GTNKDRLCID 345
E +Q Q GT L +D
Sbjct: 276 ELLEQAQAGTFAFPLHVD 293
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
L+ K A G T LH AA +P L LL A G+TA+ I R+
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 10 WLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYE 69
+ D + V G+ +++IL+ RS F +F + S K + + D+ P E
Sbjct: 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEINDVEP------E 75
Query: 70 AFNDILYYLYTGKT 83
F +++ ++YTGK
Sbjct: 76 VFKEMMCFIYTGKA 89
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 219 IHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPKVFKEVLNMGLADLNLK 274
+H A +E++++LL DV+ V ++ + +L G AD+N K
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVNAK 97
Query: 275 DARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
DA G T L++AA ++ LL GA + GKTA I
Sbjct: 98 DATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTR 323
AD N D GRT LH+AA ++ LL GA + ++G T + + +
Sbjct: 26 ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 203 ANIAEVDPMHAKIVSRIHKALDSDDIELLKLLL----DVSNVTXXXXXXXXXXXXXCSPK 258
AN A+V+ + ++ +H A S +E++++LL DV +
Sbjct: 35 ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLE 94
Query: 259 VFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
+ + +L G AD+N D G T LH+AA ++ LL GA + GKTA I
Sbjct: 95 IVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 7 KETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKV 66
K+ D ++VEG+ +RS+L+ S +F + D ++ P+ +V
Sbjct: 33 KDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPE----------EV 82
Query: 67 GYEAFNDILYYLYTGK---TKASPPEVSACVDDACAH 100
+ F ++ + YT K +K + EV CV+ H
Sbjct: 83 TVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVH 119
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
EVL AD+N D G T LH+AAKR ++ LL GA + + G T
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
AD+N D G T LH+AA ++ LL GA + GKTA I
Sbjct: 104 ADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320
AD+N +D G T LH+AA+ ++ LL GA + G T + + +
Sbjct: 38 ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 263 VLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
+L AD+N D G T LH+AA ++ LL GA + T + G+T
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N GRT LH+AA ++ LL GA + GKTA I
Sbjct: 64 EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N DA G T LH+ A ++ LL GA + GKTA I
Sbjct: 64 EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
AD+N +D G T LH+AA ++ LL GA + + G+T
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET 82
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 23/158 (14%)
Query: 46 GSVSEGKP---KYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPEVSACVDDACAHST 102
G S GK +YLL VP +VG E D + G+T+ + P + VD
Sbjct: 72 GQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRK 131
Query: 103 CPPAIN-YVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLR 161
P N ++ M A Q+ + +SI+ D IL A
Sbjct: 132 LNPFGNTFLNRFMCAQLPNQVLESISII--------------DTPGILSGAKQRVSRGYD 177
Query: 162 FFCIQRIARSNLDNVCL-----EKELPDEVSREIKSLR 194
F + R +D + L + E+ DE S I +LR
Sbjct: 178 FPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR 215
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N D G T LH+AA ++ LL GA + GKTA I
Sbjct: 97 EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
AD+N +D G+T LH+AA + ++ LL GA + G T
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDT 82
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 269 ADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKT 313
AD+N D G T LH+AA + ++ LL GA + + S G T
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGIT 74
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 267 GLADLNLKDARGRTVLHVAAK-RKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTR 323
G A + + +GRT LH AA+ P V + KG+ + DGKT + + + R
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAF 71
D + V G+ +++IL+ RS F +F + S K + + D+ P E F
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEINDVEP------EVF 226
Query: 72 NDILYYLYTGKTKASPPEVSACVDDACA 99
+++ ++YTGK P + DD A
Sbjct: 227 KEMMCFIYTGKA----PNLDKMADDLLA 250
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%)
Query: 262 EVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318
EVL AD+N DA G T LH+AA + LL GA + GKTA I
Sbjct: 64 EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 147 PILVAAFHCQLNKLRFFCIQRIARSNLDNVC--LEKELPDEVSREIKSLRVKSNQESEAN 204
P +VAA QL KL C Q +A +C + +++P + ++ K+L V + E+ N
Sbjct: 60 PKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAK--KTLLVTTGSEAVEN 117
Query: 205 IAEV 208
++
Sbjct: 118 AVKI 121
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 147 PILVAAFHCQLNKLRFFCIQRIARSNLDNVC--LEKELPDEVSREIKSLRVKSNQESEAN 204
P +VAA QL KL C Q +A +C + +++P + ++ K+L V + E+ N
Sbjct: 60 PKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAK--KTLLVTTGSEAVEN 117
Query: 205 IAEV 208
++
Sbjct: 118 AVKI 121
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 147 PILVAAFHCQLNKLRFFCIQRIARSNLDNVC--LEKELPDEVSREIKSLRVKSNQESEAN 204
P +VAA QL KL C Q +A +C + +++P + ++ K+L V + E+ N
Sbjct: 60 PKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAK--KTLLVTTGSEAVEN 117
Query: 205 IAEV 208
++
Sbjct: 118 AVKI 121
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 147 PILVAAFHCQLNKLRFFCIQRIARSNLDNVC--LEKELPDEVSREIKSLRVKSNQESEAN 204
P +VAA QL KL C Q +A +C + +++P + ++ K+L V + E+ N
Sbjct: 60 PKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAK--KTLLVTTGSEAVEN 117
Query: 205 IAEV 208
++
Sbjct: 118 AVKI 121
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 270 DLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAV-----AICRRMTRR 324
+LN ++ G T LH AA + ++ LL+KGA T + K A A C + ++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKK 191
Query: 325 KDYIEATK 332
K +A +
Sbjct: 192 KQGTDAVR 199
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAF 71
D ++VE + +++ILS S +F LF++ +V + E F
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------------QVVELSFIRAEIF 80
Query: 72 NDILYYLYTGK 82
+IL Y+Y+ K
Sbjct: 81 AEILNYIYSSK 91
>pdb|2D1I|A Chain A, Structure Of Human Atg4b
pdb|2D1I|B Chain B, Structure Of Human Atg4b
Length = 398
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 152 AFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPM 211
+FHCQ R + + C ++ ++ +++K L + + E P
Sbjct: 303 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS 362
Query: 212 HAKIVSRIHKALDSDDIELLKLLLD 236
H ++ +LDS D+E L+ D
Sbjct: 363 HLACPDVLNLSLDSSDVERLERFFD 387
>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b
Length = 396
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 152 AFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPM 211
+FHCQ R + + C ++ ++ +++K L + + E P
Sbjct: 301 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS 360
Query: 212 HAKIVSRIHKALDSDDIELLKLLLD 236
H ++ +LDS D+E L+ D
Sbjct: 361 HLACPDVLNLSLDSSDVERLERFFD 385
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAF 71
D ++VE + +++ILS S +F LF++ +V + E F
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------------QVVELSFIRAEIF 78
Query: 72 NDILYYLYTGK 82
+IL Y+Y+ K
Sbjct: 79 AEILNYIYSSK 89
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEA- 70
D VV+G ++++L+ S++F+ LF + D V H + A
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD---------------VVHLDISNAAG 73
Query: 71 FNDILYYLYTGKTKASPPEVSACVDDACAHST 102
+L ++YT K SP VDD A +T
Sbjct: 74 LGQVLEFMYTAKLSLSPEN----VDDVLAVAT 101
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 269 ADLNLKD-ARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDG 311
AD+N ++ GRT LH+A + P ++ LL GA + T G
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 21/138 (15%)
Query: 225 SDDIELLK--LLLDVSNVTXXXXXXXXXXXXXCSP---KVFKEVLNMGLADLNLKDARGR 279
S +E LK +L D S T CS ++ + +L +G+ +N KD G
Sbjct: 16 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGW 74
Query: 280 TVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRR--------------- 324
+ LH+AA ++ LL KGA + +G T + R
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 325 KDYIEATKQGQGTNKDRL 342
KD+ EAT + K L
Sbjct: 135 KDHYEATAMHRAAAKGNL 152
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 12 DAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEA- 70
D VV+G ++++L+ S++F+ LF + D V H + A
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD---------------VVHLDISNAAG 71
Query: 71 FNDILYYLYTGKTKASPPEVSACVDDACAHST 102
+L ++YT K SP VDD A +T
Sbjct: 72 LGQVLEFMYTAKLSLSPEN----VDDVLAVAT 99
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 21/138 (15%)
Query: 225 SDDIELLK--LLLDVSNVTXXXXXXXXXXXXXCSP---KVFKEVLNMGLADLNLKDARGR 279
S +E LK +L D S T CS ++ + +L +G+ +N KD G
Sbjct: 17 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGW 75
Query: 280 TVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRR--------------- 324
+ LH+AA ++ LL KGA + +G T + R
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Query: 325 KDYIEATKQGQGTNKDRL 342
KD+ EAT + K L
Sbjct: 136 KDHYEATAMHRAAAKGNL 153
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 269 ADLNLKDAR-GRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVA 316
ADLN + GRT LH+A + + +VL LL GA + G+T +
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 269 ADLNLKDAR-GRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVA 316
ADLN + GRT LH+A + + +VL LL GA + G+T +
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG 230
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 269 ADLNLKD-ARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDG 311
AD+N ++ GRT LH+A + P ++ LL GA + T G
Sbjct: 138 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,957,752
Number of Sequences: 62578
Number of extensions: 372308
Number of successful extensions: 1073
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 171
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)