Query 038955
Match_columns 380
No_of_seqs 317 out of 3809
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 07:44:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-36 4.7E-41 271.0 26.9 226 108-341 37-283 (285)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-37 4.5E-42 273.5 19.1 224 108-337 8-249 (253)
3 2xai_A ASB-9, ankyrin repeat a 100.0 4.7E-37 1.6E-41 271.3 21.5 220 110-341 3-227 (261)
4 2fo1_E LIN-12 protein; beta-ba 100.0 1.3E-37 4.6E-42 289.0 17.0 225 108-336 123-371 (373)
5 4g8k_A 2-5A-dependent ribonucl 100.0 2.4E-36 8.3E-41 276.7 24.5 228 108-340 23-302 (337)
6 1k1a_A B-cell lymphoma 3-encod 100.0 4.1E-37 1.4E-41 268.0 18.3 223 108-335 7-240 (241)
7 1n11_A Ankyrin; clathrin, BAND 100.0 2.2E-36 7.4E-41 286.8 23.2 224 109-340 145-373 (437)
8 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-35 3.7E-40 265.1 25.5 227 108-340 3-249 (285)
9 3b7b_A Euchromatic histone-lys 100.0 3.5E-36 1.2E-40 261.5 21.5 217 108-331 9-230 (237)
10 3ljn_A Hypothetical protein; a 100.0 8.6E-37 3E-41 282.7 18.6 223 108-337 18-270 (364)
11 3aji_A 26S proteasome non-ATPa 100.0 3.4E-36 1.2E-40 260.6 21.1 218 111-336 7-230 (231)
12 1oy3_D Transcription factor in 100.0 2.8E-36 9.5E-41 268.9 20.7 210 108-322 7-269 (282)
13 4b93_B Ankyrin repeat domain-c 100.0 6.7E-37 2.3E-41 271.0 14.3 222 109-336 10-244 (269)
14 3d9h_A CDNA FLJ77766, highly s 100.0 5.3E-36 1.8E-40 267.9 19.8 219 108-338 57-281 (285)
15 3utm_A Tankyrase-1; tankyrase, 100.0 2.7E-35 9.3E-40 270.6 24.6 226 108-341 22-310 (351)
16 1n11_A Ankyrin; clathrin, BAND 100.0 2E-35 6.9E-40 280.2 23.3 288 19-338 13-305 (437)
17 2dzn_A Probable 26S proteasome 100.0 1.5E-35 5E-40 256.0 20.1 218 110-332 2-226 (228)
18 2f8y_A Notch homolog 1, transl 100.0 1.6E-35 5.3E-40 255.0 18.2 213 121-339 2-219 (223)
19 3d9h_A CDNA FLJ77766, highly s 100.0 6.1E-35 2.1E-39 261.0 21.8 225 108-341 13-252 (285)
20 4g8k_A 2-5A-dependent ribonucl 100.0 1.6E-34 5.5E-39 264.6 24.1 224 108-340 57-330 (337)
21 3eu9_A Huntingtin-interacting 100.0 2.5E-34 8.4E-39 249.9 21.6 222 108-337 7-236 (240)
22 1oy3_D Transcription factor in 100.0 2.8E-34 9.7E-39 255.9 20.7 196 142-341 6-255 (282)
23 3utm_A Tankyrase-1; tankyrase, 100.0 9.7E-34 3.3E-38 260.3 24.3 220 108-336 56-334 (351)
24 3kea_A K1L; tropism, ANK repea 100.0 6.4E-35 2.2E-39 260.8 13.6 215 108-339 29-249 (285)
25 2rfa_A Transient receptor pote 100.0 7.4E-34 2.5E-38 246.1 19.9 195 110-339 3-225 (232)
26 1s70_B 130 kDa myosin-binding 100.0 1.9E-34 6.4E-39 259.5 16.4 210 109-326 39-280 (299)
27 3b7b_A Euchromatic histone-lys 100.0 3.4E-33 1.2E-37 242.7 22.9 193 142-340 8-206 (237)
28 2xai_A ASB-9, ankyrin repeat a 100.0 1.5E-33 5E-38 248.9 20.4 190 144-340 2-195 (261)
29 1yyh_A HN1;, notch 1, ankyrin 100.0 5.7E-34 2E-38 250.3 17.0 198 135-340 2-219 (253)
30 4gpm_A Engineered protein OR26 100.0 4.5E-33 1.5E-37 228.5 19.2 155 147-339 6-164 (169)
31 3hra_A Ankyrin repeat family p 100.0 7.8E-33 2.7E-37 234.2 21.1 187 109-334 4-201 (201)
32 2fo1_E LIN-12 protein; beta-ba 100.0 2.1E-34 7.3E-39 267.4 12.0 223 108-340 92-342 (373)
33 1k1a_A B-cell lymphoma 3-encod 100.0 1.7E-32 6E-37 238.7 23.0 195 142-340 6-212 (241)
34 4b93_B Ankyrin repeat domain-c 100.0 2E-33 6.9E-38 248.7 16.1 195 142-340 8-214 (269)
35 2etb_A Transient receptor pote 100.0 2.4E-33 8E-38 246.7 16.1 199 110-337 2-247 (256)
36 3kea_A K1L; tropism, ANK repea 100.0 2E-33 6.9E-38 251.1 15.7 208 120-340 10-224 (285)
37 1ikn_D Protein (I-kappa-B-alph 100.0 8.5E-34 2.9E-38 246.5 11.8 194 142-338 5-211 (236)
38 2dzn_A Probable 26S proteasome 100.0 5.3E-32 1.8E-36 233.7 20.7 194 145-341 2-205 (228)
39 3aji_A 26S proteasome non-ATPa 100.0 9.9E-32 3.4E-36 232.5 21.8 193 143-340 4-201 (231)
40 4gpm_A Engineered protein OR26 100.0 1.1E-31 3.7E-36 220.3 19.9 156 111-306 5-164 (169)
41 2pnn_A Transient receptor pote 100.0 9.3E-33 3.2E-37 245.3 13.0 206 107-339 10-262 (273)
42 1s70_B 130 kDa myosin-binding 100.0 6.4E-32 2.2E-36 243.0 17.1 219 117-340 5-261 (299)
43 3ljn_A Hypothetical protein; a 100.0 2.7E-32 9.4E-37 252.4 14.7 191 142-340 17-240 (364)
44 3jxi_A Vanilloid receptor-rela 100.0 3.6E-32 1.2E-36 239.6 13.0 204 109-339 4-253 (260)
45 2f8y_A Notch homolog 1, transl 100.0 7.5E-31 2.6E-35 225.7 19.6 191 108-305 23-218 (223)
46 1sw6_A Regulatory protein SWI6 100.0 9.5E-32 3.2E-36 245.0 12.0 196 112-322 99-327 (327)
47 1ikn_D Protein (I-kappa-B-alph 100.0 1.7E-32 5.8E-37 238.3 6.4 208 108-320 6-228 (236)
48 4hbd_A KN motif and ankyrin re 100.0 1E-30 3.4E-35 232.5 14.1 183 148-334 79-273 (276)
49 2rfm_A Putative ankyrin repeat 100.0 7E-30 2.4E-34 214.5 16.4 156 142-335 32-191 (192)
50 3eu9_A Huntingtin-interacting 100.0 1.4E-29 4.7E-34 219.9 18.4 193 142-340 6-206 (240)
51 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.7E-29 9.3E-34 206.5 18.8 155 142-334 11-169 (169)
52 2rfa_A Transient receptor pote 100.0 1.4E-29 4.8E-34 219.1 17.0 157 145-338 3-185 (232)
53 3v31_A Ankyrin repeat family A 100.0 1.4E-29 4.7E-34 207.8 16.1 156 144-337 2-161 (167)
54 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.6E-29 5.6E-34 206.2 15.5 155 143-336 3-162 (162)
55 3v30_A DNA-binding protein rfx 100.0 9.3E-30 3.2E-34 209.9 14.1 159 146-341 3-165 (172)
56 2pnn_A Transient receptor pote 100.0 6.9E-30 2.4E-34 226.8 12.9 186 107-316 51-272 (273)
57 3f6q_A Integrin-linked protein 100.0 2.1E-29 7.2E-34 209.2 14.6 161 143-340 3-167 (179)
58 3twr_A Tankyrase-2; ankyrin re 100.0 2E-29 7E-34 206.4 13.3 156 142-335 5-164 (165)
59 3hra_A Ankyrin repeat family p 100.0 1.7E-28 5.9E-33 207.4 18.0 163 143-341 3-175 (201)
60 1awc_B Protein (GA binding pro 100.0 2.6E-28 9.1E-33 197.2 17.7 147 145-330 2-152 (153)
61 2etb_A Transient receptor pote 100.0 1.8E-29 6E-34 222.0 9.5 126 211-337 39-207 (256)
62 1d9s_A Cyclin-dependent kinase 100.0 7.8E-29 2.7E-33 196.2 12.1 129 206-336 3-136 (136)
63 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.2E-28 1.8E-32 196.0 16.7 150 145-333 2-155 (156)
64 3v30_A DNA-binding protein rfx 100.0 4.2E-28 1.4E-32 199.9 15.0 164 111-314 3-171 (172)
65 1sw6_A Regulatory protein SWI6 100.0 5.2E-29 1.8E-33 226.9 9.5 208 121-341 58-313 (327)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-27 4E-32 195.1 16.6 154 109-303 4-162 (162)
67 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-26 3.9E-31 190.8 19.8 154 108-301 12-169 (169)
68 2rfm_A Putative ankyrin repeat 99.9 9E-27 3.1E-31 195.5 15.8 154 108-301 33-190 (192)
69 2jab_A H10-2-G3; HER2, darpin, 99.9 7.3E-27 2.5E-31 184.8 14.0 123 211-334 10-136 (136)
70 3jxi_A Vanilloid receptor-rela 99.9 7.3E-28 2.5E-32 212.0 8.7 164 143-338 3-212 (260)
71 3f6q_A Integrin-linked protein 99.9 1.2E-26 4.2E-31 192.4 15.1 163 109-311 4-171 (179)
72 3v31_A Ankyrin repeat family A 99.9 1.5E-26 5.3E-31 189.5 15.1 155 111-305 4-162 (167)
73 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3E-27 1E-31 205.6 11.3 157 144-339 4-167 (239)
74 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.6E-26 8.8E-31 178.7 14.7 122 214-336 1-126 (126)
75 1awc_B Protein (GA binding pro 99.9 8.6E-26 2.9E-30 182.4 18.3 146 111-297 3-152 (153)
76 1bi7_B P16INK4A, MTS1, multipl 99.9 4E-27 1.4E-31 190.9 9.6 131 209-341 6-141 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-27 3.7E-32 208.4 6.2 185 109-336 4-204 (239)
78 3twr_A Tankyrase-2; ankyrin re 99.9 5.7E-26 1.9E-30 185.8 16.2 130 211-341 4-138 (165)
79 2vge_A RELA-associated inhibit 99.9 2.5E-29 8.4E-34 217.1 -4.2 199 127-334 2-211 (229)
80 3c5r_A BARD-1, BRCA1-associate 99.9 7.4E-27 2.5E-31 185.0 8.2 126 210-336 5-134 (137)
81 3t8k_A Uncharacterized protein 99.9 4.7E-27 1.6E-31 195.8 6.7 122 213-335 36-178 (186)
82 4hbd_A KN motif and ankyrin re 99.9 5.8E-26 2E-30 201.7 13.7 159 181-340 77-246 (276)
83 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1E-24 3.5E-29 176.5 17.9 148 111-300 3-155 (156)
84 2vge_A RELA-associated inhibit 99.9 4.6E-26 1.6E-30 196.6 9.9 138 202-340 8-152 (229)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 9.7E-26 3.3E-30 182.7 10.3 138 142-318 9-151 (156)
86 3aaa_C Myotrophin, protein V-1 99.9 2.8E-25 9.4E-30 172.5 10.3 108 212-320 4-115 (123)
87 1d9s_A Cyclin-dependent kinase 99.9 7.4E-25 2.5E-29 173.2 10.9 123 142-303 9-136 (136)
88 3ehr_A Osteoclast-stimulating 99.9 3.2E-25 1.1E-29 190.5 8.5 132 210-341 68-203 (222)
89 3deo_A Signal recognition part 99.9 4.1E-25 1.4E-29 184.0 7.2 122 212-335 41-167 (183)
90 1dcq_A PYK2-associated protein 99.9 3.1E-23 1.1E-27 184.0 18.3 125 213-338 128-265 (278)
91 2aja_A Ankyrin repeat family p 99.9 1E-25 3.4E-30 207.7 1.3 175 111-336 66-250 (376)
92 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.5E-23 5.2E-28 154.1 11.5 93 243-336 1-93 (93)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.4E-23 1.8E-27 159.8 15.2 122 144-303 1-126 (126)
94 3t8k_A Uncharacterized protein 99.9 2.5E-24 8.6E-29 179.3 6.3 157 111-308 7-184 (186)
95 3ui2_A Signal recognition part 99.9 8.4E-24 2.9E-28 184.3 9.8 120 212-333 42-182 (244)
96 2jab_A H10-2-G3; HER2, darpin, 99.9 9.4E-23 3.2E-27 161.0 14.9 122 142-301 11-136 (136)
97 2aja_A Ankyrin repeat family p 99.9 1.1E-25 3.9E-30 207.3 -4.5 207 110-334 92-342 (376)
98 3lvq_E ARF-GAP with SH3 domain 99.9 9.6E-23 3.3E-27 195.8 14.7 125 215-340 132-269 (497)
99 3jue_A Arfgap with coiled-coil 99.9 1.7E-22 5.8E-27 185.5 13.2 125 211-336 195-326 (368)
100 2b0o_E UPLC1; arfgap, structur 99.9 3E-22 1E-26 179.7 14.3 123 213-336 149-284 (301)
101 2b0o_E UPLC1; arfgap, structur 99.9 2.2E-22 7.4E-27 180.6 13.2 136 180-324 151-299 (301)
102 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.8E-22 2E-26 145.5 11.9 89 214-303 1-93 (93)
103 2l6b_A NR1C; ankyrin, consensu 99.9 1.3E-22 4.6E-27 155.2 7.5 105 210-315 4-112 (115)
104 3c5r_A BARD-1, BRCA1-associate 99.9 3.5E-21 1.2E-25 152.1 13.1 101 240-341 6-106 (137)
105 3deo_A Signal recognition part 99.9 7.1E-22 2.4E-26 164.3 8.8 135 143-333 42-181 (183)
106 3ehr_A Osteoclast-stimulating 99.9 7.3E-22 2.5E-26 169.4 8.6 133 142-312 70-207 (222)
107 3aaa_C Myotrophin, protein V-1 99.8 6.2E-21 2.1E-25 147.7 12.1 100 240-340 3-102 (123)
108 2l6b_A NR1C; ankyrin, consensu 99.8 1.8E-21 6.3E-26 148.8 7.1 99 240-339 5-103 (115)
109 3lvq_E ARF-GAP with SH3 domain 99.8 4.6E-20 1.6E-24 177.2 17.2 134 145-310 132-272 (497)
110 2zgd_A 3 repeat synthetic anky 99.8 2.5E-20 8.6E-25 141.3 10.3 91 239-330 19-109 (110)
111 3jue_A Arfgap with coiled-coil 99.8 4E-20 1.4E-24 169.7 13.1 140 145-322 199-348 (368)
112 1dcq_A PYK2-associated protein 99.8 1.9E-19 6.5E-24 159.6 15.0 96 208-304 162-264 (278)
113 3ui2_A Signal recognition part 99.8 1.5E-19 5E-24 157.3 11.4 138 108-303 43-185 (244)
114 2zgd_A 3 repeat synthetic anky 99.8 3.4E-18 1.2E-22 129.5 10.5 91 206-297 15-109 (110)
115 3htm_A Speckle-type POZ protei 99.7 4E-18 1.4E-22 140.0 10.3 133 6-170 30-162 (172)
116 2vkp_A BTB/POZ domain-containi 99.7 1.1E-17 3.8E-22 126.3 9.4 101 3-133 1-105 (109)
117 3hve_A Gigaxonin; ubiquitin, c 99.7 3E-17 1E-21 143.5 10.9 138 3-170 24-161 (256)
118 2if5_A Zinc finger and BTB dom 99.7 2.6E-17 8.9E-22 126.5 9.0 99 5-132 20-118 (120)
119 2ppi_A Gigaxonin; BTB domain, 99.7 2.8E-17 9.6E-22 130.2 9.2 102 4-132 41-142 (144)
120 1r29_A B-cell lymphoma 6 prote 99.7 3.8E-17 1.3E-21 126.9 9.5 99 5-133 24-123 (127)
121 3b84_A Zinc finger and BTB dom 99.7 2.4E-17 8.2E-22 126.3 7.8 97 5-134 19-115 (119)
122 4eoz_A Speckle-type POZ protei 99.7 1.5E-17 5E-22 132.6 4.7 123 6-160 21-143 (145)
123 2yy9_A Zinc finger and BTB dom 99.7 5.2E-17 1.8E-21 127.3 7.3 98 5-135 20-117 (135)
124 3hqi_A Speckle-type POZ protei 99.7 1.4E-16 4.7E-21 143.6 10.7 133 6-170 170-302 (312)
125 2vpk_A Myoneurin; transcriptio 99.7 1.9E-16 6.7E-21 120.8 9.0 95 6-133 18-114 (116)
126 2z8h_A Transcription regulator 99.7 1.3E-16 4.3E-21 125.7 8.2 99 6-135 32-131 (138)
127 1buo_A POZ domain, protein (pr 99.7 2.5E-16 8.6E-21 121.0 8.5 95 5-133 23-117 (121)
128 2q81_A MIZ-1 protein; BTB/POZ 99.7 1.2E-16 4.2E-21 122.4 6.7 94 5-132 22-115 (119)
129 3i3n_A Kelch-like protein 11; 99.7 5.4E-17 1.8E-21 143.8 5.2 140 5-170 27-169 (279)
130 2ihc_A Transcription regulator 99.6 6.6E-17 2.3E-21 124.8 3.1 95 6-131 25-120 (124)
131 3ga1_A Nucleus accumbens-assoc 99.6 4.1E-16 1.4E-20 121.2 4.6 96 5-133 28-124 (129)
132 3fkc_A Transcriptional regulat 99.6 1.3E-15 4.6E-20 115.8 7.1 88 6-127 27-115 (116)
133 3ohu_A Transcription regulator 99.6 2.8E-16 9.5E-21 121.6 2.7 95 5-129 27-121 (125)
134 3m5b_A Zinc finger and BTB dom 99.6 6.9E-16 2.4E-20 117.7 4.5 90 6-133 26-115 (119)
135 2ast_A S-phase kinase-associat 98.5 1.6E-07 5.4E-12 75.0 7.4 112 13-135 3-124 (159)
136 4ajy_C Transcription elongatio 98.3 1.4E-06 4.9E-11 63.1 7.6 52 18-79 10-63 (97)
137 1fs1_B SKP1, cyclin A/CDK2-ass 97.9 5.5E-05 1.9E-09 58.8 8.1 109 13-135 4-119 (141)
138 2p1m_A SKP1-like protein 1A; F 97.3 7E-05 2.4E-09 59.5 2.1 110 13-135 6-123 (160)
139 3drz_A BTB/POZ domain-containi 97.1 0.0021 7.2E-08 47.1 7.5 95 12-132 7-103 (107)
140 1hv2_A Elongin C, ELC1; protei 96.8 0.0059 2E-07 43.9 7.8 59 13-82 6-65 (99)
141 2fnj_C Transcription elongatio 96.0 0.018 6E-07 41.1 6.4 88 13-121 3-95 (96)
142 3v7d_A Suppressor of kinetocho 95.6 0.053 1.8E-06 43.1 8.3 115 13-135 9-131 (169)
143 3drx_A BTB/POZ domain-containi 94.5 0.15 5E-06 41.4 8.0 100 8-133 8-110 (202)
144 1vcb_B Protein (elongin C); tu 89.9 0.45 1.5E-05 34.7 4.8 60 13-82 19-81 (112)
145 1s1g_A Potassium voltage-gated 72.7 3 0.0001 30.9 3.3 86 11-125 13-99 (124)
146 3kvt_A Potassium channel prote 70.5 2.3 7.7E-05 31.1 2.2 86 12-125 6-92 (115)
147 2nz0_B Potassium voltage-gated 64.8 4.2 0.00014 30.9 2.8 86 11-125 35-121 (140)
148 1t1d_A Protein (potassium chan 60.9 6.7 0.00023 27.7 3.1 86 13-126 3-90 (100)
149 3mkq_B Coatomer subunit alpha; 42.3 74 0.0025 25.0 6.6 134 111-269 9-143 (177)
150 1gp8_A Protein (scaffolding pr 40.7 22 0.00074 19.9 2.3 17 219-235 17-33 (40)
151 1nn7_A Potassium channel KV4.2 39.5 18 0.00061 25.7 2.5 64 13-86 2-66 (105)
152 3gvo_A Pumilio 2, pumilio homo 21.5 69 0.0024 28.2 3.6 14 30-43 2-15 (351)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-36 Score=270.97 Aligned_cols=226 Identities=19% Similarity=0.154 Sum_probs=203.8
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.++||+|+..|..+++++|++.|++++.+ +..+.||||+|+..|..+++++|++. +.+++..+..|.||+|+|
T Consensus 37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 112 (285)
T 1wdy_A 37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEA 112 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHH
Confidence 35578999999999999999999999998887 78899999999999999999999998 778999999999999999
Q ss_pred HHhhhhhh-hhcccccccccCCCcC----------CcccchHHHHHHHcCCHHHHHHHHHC-C-C---CCCCCchHHHHH
Q 038955 188 REIKSLRV-KSNQESEANIAEVDPM----------HAKIVSRIHKALDSDDIELLKLLLDV-S-N---VTLDDAYALHYA 251 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g-~---~~~~g~t~Lh~A 251 (380)
+..+...+ ..+.. .+..++.. +..|.||||+|+..|+.+++++|++. | + .|..|.||||+|
T Consensus 113 ~~~~~~~~~~~Ll~---~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a 189 (285)
T 1wdy_A 113 AVYGKVKALKFLYK---RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189 (285)
T ss_dssp HHTTCHHHHHHHHH---TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred HHhCCHHHHHHHHH---hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 98887765 23332 44555554 77899999999999999999999997 6 3 457899999999
Q ss_pred HHcCC----HHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhhCCccc
Q 038955 252 AAYCS----PKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLS-KGACTSETTSDGKTAVAICRRMTRRKD 326 (380)
Q Consensus 252 ~~~~~----~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~~~~~ 326 (380)
+..++ .+++++|++.| ++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|++.++.++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 99999 89999999998 9999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCcc
Q 038955 327 YIEATKQGQGTNKDR 341 (380)
Q Consensus 327 v~~l~~~g~~~~~~~ 341 (380)
+++|+++|++++...
T Consensus 269 ~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 269 AELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHSSCSCCSS
T ss_pred HHHHHHcCCCCCccc
Confidence 999999999987643
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.3e-37 Score=273.53 Aligned_cols=224 Identities=13% Similarity=-0.009 Sum_probs=171.4
Q ss_pred hhhhhHHHHHHHcC-------------cHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCC
Q 038955 108 NYVIELMYASAAFQ-------------MTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLD 174 (380)
Q Consensus 108 ~~~~~~L~~A~~~~-------------~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~ 174 (380)
..+.|+||+|+..| ..+++++|++.|.+++... +..|.||||+|+..|..+++++|++. +++++
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~ 84 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEA--SADAN 84 (253)
T ss_dssp --------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCC
Confidence 46789999999977 8999999999999986532 67899999999999999999999998 77999
Q ss_pred ccccCCCchHHHHHHhhhhhhh-hcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHH
Q 038955 175 NVCLEKELPDEVSREIKSLRVK-SNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALH 249 (380)
Q Consensus 175 ~~~~~g~t~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh 249 (380)
..+..|.||||+|+..+...+. .+.. .....++..+..|.||||+|+..|+.+++++|+++| ++ |..|+||||
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHH--STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 9999999999999988877652 2221 123368888999999999999999999999999999 44 578999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHH
Q 038955 250 YAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIE 329 (380)
Q Consensus 250 ~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~ 329 (380)
+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|+.+++++
T Consensus 163 ~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCC
Q 038955 330 ATKQGQGT 337 (380)
Q Consensus 330 l~~~g~~~ 337 (380)
|......+
T Consensus 242 l~~~~~~~ 249 (253)
T 1yyh_A 242 LDLEHHHH 249 (253)
T ss_dssp HHC-----
T ss_pred HHHHhhhc
Confidence 98865443
No 3
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=271.29 Aligned_cols=220 Identities=17% Similarity=0.083 Sum_probs=195.3
Q ss_pred hhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHH
Q 038955 110 VIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSRE 189 (380)
Q Consensus 110 ~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~ 189 (380)
+.|+||.|+..|..+++++|++.|++++.+ +..|.||||+|+..|..+++++|++. +++++..+..|.||||+|+.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACV 78 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH
Confidence 468999999999999999999999999887 78899999999999999999999998 77999999999999999998
Q ss_pred hhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHH
Q 038955 190 IKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVL 264 (380)
Q Consensus 190 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll 264 (380)
.+...+ ..+.. .++.++. +..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|+
T Consensus 79 ~~~~~~v~~Ll~---~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 79 SGSWDCVNLLLQ---HGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL 154 (261)
T ss_dssp HTCHHHHHHHHH---TTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHH---CCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 888775 33332 4455553 445999999999999999999999999 44 578999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 265 NMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 265 ~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
+.| +++|. +..|+||||+|+..++.+++++|+++|+|++.+|.+|+||||+|+. +..++++|++.+..+.-..
T Consensus 155 ~~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~--~~~~~~~ll~~~~~~~l~~ 227 (261)
T 2xai_A 155 ESG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGPPSLMQ 227 (261)
T ss_dssp HHT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TCTHHHHHHHC-CCCCHHH
T ss_pred HcC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccc--cccHHHHHHhccCCccHHH
Confidence 998 99995 8899999999999999999999999999999999999999999995 5568999999987665433
No 4
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-37 Score=288.95 Aligned_cols=225 Identities=13% Similarity=0.078 Sum_probs=202.7
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHH--------HhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccC
Q 038955 108 NYVIELMYASAAFQMTDLVSILQ--------DLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLE 179 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll--------~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~ 179 (380)
..+.|+||+|+..|..+++++|+ +.|++++.. +..|.||||+|+..|..+++++|++. +++++..+..
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~ 198 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKS 198 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTT
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHC--CCCCcccCCC
Confidence 46789999999999988777765 789999887 78999999999999999999999998 7799999999
Q ss_pred CCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcC---CHHHHHHHHHCC-CCC-----------CC
Q 038955 180 KELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSD---DIELLKLLLDVS-NVT-----------LD 243 (380)
Q Consensus 180 g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~g-~~~-----------~~ 243 (380)
|.||||+|+..+...+ ..+...+..+..++..+..|.||||+|+..+ +.+++++|+++| +++ ..
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~ 278 (373)
T 2fo1_E 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278 (373)
T ss_dssp CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCC
T ss_pred CCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccccc
Confidence 9999999999888776 3333333233678889999999999999998 899999999999 554 48
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCC
Q 038955 244 DAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTR 323 (380)
Q Consensus 244 g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~ 323 (380)
|.||||+|+..|+.+++++|++.+++++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 279 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp CCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHcCCC
Q 038955 324 RKDYIEATKQGQG 336 (380)
Q Consensus 324 ~~~v~~l~~~g~~ 336 (380)
.+++++|+++|++
T Consensus 359 ~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 359 HNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHhcCcc
Confidence 9999999999875
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.4e-36 Score=276.72 Aligned_cols=228 Identities=20% Similarity=0.161 Sum_probs=172.5
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhc-----------------
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIAR----------------- 170 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~----------------- 170 (380)
..+.|+|+.|++.|+.++|++|+++|++++.+. ...|.||||+|+..|+.+++++|+++++.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 345789999999999999999999999998762 34689999999999999999999998331
Q ss_pred --------------cCCCccccCCCchHHHHHHhhhhhhh-hcccccccccCCC----------cCCcccchHHHHHHHc
Q 038955 171 --------------SNLDNVCLEKELPDEVSREIKSLRVK-SNQESEANIAEVD----------PMHAKIVSRIHKALDS 225 (380)
Q Consensus 171 --------------~~~~~~~~~g~t~l~~a~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~g~t~L~~A~~~ 225 (380)
.+++..+..|.||+|+|+..+..... .+.. .++.++ ..+..|.||||+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~---~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK---RGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH---TTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHH---cCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 23445566677777777666655542 2222 222222 2344567777777777
Q ss_pred CCHHHHHHHHH-CC-CC---CCCCchHHHHHHHcCC----HHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 038955 226 DDIELLKLLLD-VS-NV---TLDDAYALHYAAAYCS----PKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVT 296 (380)
Q Consensus 226 ~~~~~~~~Ll~-~g-~~---~~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~ 296 (380)
|+.+++++|++ .| ++ |..|.||+|+++..+. ..++++|+++| +++|.+|..|+||||+|+..|+.+++++
T Consensus 179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~ 257 (337)
T 4g8k_A 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQR 257 (337)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence 77777777775 35 33 4566777776665433 24566666666 8888888899999999999999999999
Q ss_pred HHhC-CCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 297 LLSK-GACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 297 Ll~~-gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
|++. |+++|.+|.+|+||||+|++.|+.++|++|+++|++++..
T Consensus 258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~ 302 (337)
T 4g8k_A 258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 302 (337)
T ss_dssp HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC
T ss_pred HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 9984 8999999999999999999999999999999999988653
No 6
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.1e-37 Score=268.00 Aligned_cols=223 Identities=15% Similarity=0.069 Sum_probs=195.9
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHH----hccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCch
Q 038955 108 NYVIELMYASAAFQMTDLVSILQD----LFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELP 183 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~----~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~ 183 (380)
+.+.|+||+|+..|..+++++|++ .+.+++.+ +..|.||||+|+..|..+++++|++. +.+++..+..|.||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTA 82 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc--cccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCH
Confidence 467899999999999999999987 68888877 78899999999999999999999998 77899999999999
Q ss_pred HHHHHHhhhhhh-hhcccccc-cccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---C-CCCchHHHHHHHcCC
Q 038955 184 DEVSREIKSLRV-KSNQESEA-NIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---T-LDDAYALHYAAAYCS 256 (380)
Q Consensus 184 l~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~-~~g~t~Lh~A~~~~~ 256 (380)
+|+|+..+.... ..+...+. ....++..+..|.||||+|+..|+.+++++|++.| ++ + ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999998887765 23322221 12367888999999999999999999999999999 44 3 679999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCC
Q 038955 257 PKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQ 335 (380)
Q Consensus 257 ~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~ 335 (380)
.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.++++.|.+.++
T Consensus 163 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 163 LSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 99999999998 9999999999999999999999999999999999999999999999999999999999999988765
No 7
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-36 Score=286.85 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=200.6
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHH
Q 038955 109 YVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSR 188 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~ 188 (380)
.+.++|+.|+..|..+++++|++++.+++.. +..+.||||+|+..+..+++++|++. +.+++..+..|.||||+|+
T Consensus 145 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 220 (437)
T 1n11_A 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAA 220 (437)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGG--TCCSCCCCTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHH
Confidence 4578999999999999999999999888776 67888999999999999999999988 6678888889999999998
Q ss_pred Hhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHH
Q 038955 189 EIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEV 263 (380)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~L 263 (380)
..+...+ ..+. ..+..++..+..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+..|+.+++++|
T Consensus 221 ~~~~~~~~~~Ll---~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 297 (437)
T 1n11_A 221 KQNQVEVARSLL---QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297 (437)
T ss_dssp HTTCHHHHHHHH---HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHH---HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8877765 2222 256678888899999999999999999999999998 4 357899999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 264 LNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 264 l~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
++++ ++++.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|.||||+|+..|+.+++++|++.|++++..
T Consensus 298 l~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 298 IKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373 (437)
T ss_dssp HHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred HhCC-ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999988653
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-35 Score=265.15 Aligned_cols=227 Identities=19% Similarity=0.069 Sum_probs=205.5
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.++|+.|+..|..+++++|++.|.+++... +..+.||||+|+..|..+++++|++. +.+++..+..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence 356899999999999999999999999987642 46788999999999999999999998 778999999999999999
Q ss_pred HHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC-------------CCCCchHHHHHH
Q 038955 188 REIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV-------------TLDDAYALHYAA 252 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~-------------~~~g~t~Lh~A~ 252 (380)
+..++..+ ..+. ..+..++..+..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+
T Consensus 80 ~~~~~~~~v~~Ll---~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 80 AIAGSVKLLKLFL---SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHTCHHHHHHHH---HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HHcCCHHHHHHHH---HcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 98888765 2332 256778889999999999999999999999999999 43 466899999999
Q ss_pred HcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHH
Q 038955 253 AYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKE----PAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYI 328 (380)
Q Consensus 253 ~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~----~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~ 328 (380)
..|+.+++++|++..|++++.+|..|+||||+|+..++ .+++++|+++|++++.+|..|.||||+|++.|+.++++
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 99999999999998559999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHH-cCCCCCCc
Q 038955 329 EATK-QGQGTNKD 340 (380)
Q Consensus 329 ~l~~-~g~~~~~~ 340 (380)
.|++ .|++++..
T Consensus 237 ~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 237 RLLEQEHIEINDT 249 (285)
T ss_dssp HHHHSSSCCTTCC
T ss_pred HHHhccCCCcccc
Confidence 9999 78877653
No 9
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.5e-36 Score=261.54 Aligned_cols=217 Identities=17% Similarity=0.130 Sum_probs=195.5
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+|+.|+..|..+++++|++.|.+++.. +..+.||||+|+..|..+++++|++. +.+++..+..|.||+|+|
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHH
Confidence 45679999999999999999999999999887 78899999999999999999999998 778999999999999999
Q ss_pred HHhhhhhhh-hcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHH
Q 038955 188 REIKSLRVK-SNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKE 262 (380)
Q Consensus 188 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~ 262 (380)
+..+...+. .+.. ..+..++..+..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++
T Consensus 85 ~~~~~~~~~~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 85 AKKGHYEVVQYLLS--NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHTTCHHHHHHHHT--TTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHcCCHHHHHHHHh--CCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 988877652 2221 123678888999999999999999999999999999 44 5789999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHH
Q 038955 263 VLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEAT 331 (380)
Q Consensus 263 Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~ 331 (380)
|++.+ ++++.+|..|+||||+|+..++.+++++|+++|+|++.+|..|+||||+|+..++...+..+.
T Consensus 163 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 163 LLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998 999999999999999999999999999999999999999999999999999998875554443
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.6e-37 Score=282.68 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=197.2
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+||+|+..|..+++++|++.|++++.. +..+.||||+|+..|+.+++++|++. ++ +..+..|.||||+|
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~--~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASV--GE--VHSLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHH--CC--CCCCBTTBCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHC--CC--CccccCCCCHHHHH
Confidence 67899999999999999999999999999887 78999999999999999999999998 44 33446899999999
Q ss_pred HHhhhhhh-hhccccc-ccccCCCc-----------------CCcccchHHHHHHHcC--CHHHHHHHHHCC-CC---CC
Q 038955 188 REIKSLRV-KSNQESE-ANIAEVDP-----------------MHAKIVSRIHKALDSD--DIELLKLLLDVS-NV---TL 242 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~-~~~~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~~~Ll~~g-~~---~~ 242 (380)
+..++..+ ..+...+ ..+..++. .+..|.||||+|+..| +.+++++|+++| ++ |.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~ 171 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence 88887765 2222221 01233333 7788999999999999 999999999999 44 57
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 038955 243 DDAYALHYAAAYCSPKVFKEVLNMGLAD-----LNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAI 317 (380)
Q Consensus 243 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~ad-----vn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~ 317 (380)
.|+||||+|+..|+.+++++|++.+ ++ +|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 250 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL 250 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 8999999999999999999999998 88 99999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcccHHHHHHcCCCC
Q 038955 318 CRRMTRRKDYIEATKQGQGT 337 (380)
Q Consensus 318 A~~~~~~~~v~~l~~~g~~~ 337 (380)
|++.|+.+++++|++.|+++
T Consensus 251 A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp HHHTCCHHHHHHHHHHSCHH
T ss_pred HHHhChHHHHHHHHHcCCch
Confidence 99999999999999998653
No 11
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.4e-36 Score=260.59 Aligned_cols=218 Identities=18% Similarity=0.085 Sum_probs=198.2
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccCc-ccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHH
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLYE-AEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSRE 189 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~ 189 (380)
.++|+.|+..|..+.++.++..+... +.. +..+.||||+|+..|..+++++|++. +.+++..+..|.||||+|+.
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcC--CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHHH
Confidence 57899999999999999999886553 333 67899999999999999999999998 77899999999999999998
Q ss_pred hhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHH
Q 038955 190 IKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVL 264 (380)
Q Consensus 190 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll 264 (380)
.+...+ ..+. ..+..++.++..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+..|+.+++++|+
T Consensus 83 ~~~~~~v~~Ll---~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 83 AGXDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HTCHHHHHHHH---HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHH---HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 887765 2332 256778889999999999999999999999999999 4 4578999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 265 NMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 265 ~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
+.+ ++++.+|..|+||||+|+..++.+++++|+++|+|++.+|..|.|||++|+..++.+++++|.+.|++
T Consensus 160 ~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 160 FYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred hcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 988 99999999999999999999999999999999999999999999999999999999999999998764
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.8e-36 Score=268.93 Aligned_cols=210 Identities=15% Similarity=0.050 Sum_probs=171.6
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccC---cccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLY---EAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPD 184 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~---~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l 184 (380)
..+.|+||+|+..|..+++++|++.|.+ ++.+ +..|.||||+|+..|..+++++|++. +++++..+..|.|||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ--NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTAL 82 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHH
Confidence 4668999999999999999999999988 5555 78899999999999999999999998 779999999999999
Q ss_pred HHHHHhhhhhh-hhccccccc--------------------------------------------ccCCCcCCcccchHH
Q 038955 185 EVSREIKSLRV-KSNQESEAN--------------------------------------------IAEVDPMHAKIVSRI 219 (380)
Q Consensus 185 ~~a~~~~~~~~-~~~~~~~~~--------------------------------------------~~~~~~~~~~g~t~L 219 (380)
|+|+..+...+ ..+...+.. +..++.++..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 99987776654 222222211 234677888999999
Q ss_pred HHHHHcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 038955 220 HKALDSDDIELLKLLLDVS-NVT----LDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVL 294 (380)
Q Consensus 220 ~~A~~~~~~~~~~~Ll~~g-~~~----~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v 294 (380)
|+|+..|+.+++++|+++| +++ ..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v 241 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILA 241 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHH
Confidence 9999999999999999999 543 24999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHhhC
Q 038955 295 VTLLSKGACTSETTSDGKTAVAICRRMT 322 (380)
Q Consensus 295 ~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 322 (380)
++|+++||+++.+|..|.|||++|....
T Consensus 242 ~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 242 RLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHTTCCCCCCC--------------
T ss_pred HHHHHcCCCcCcCCCcccccccccCCcc
Confidence 9999999999999999999999998754
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=271.02 Aligned_cols=222 Identities=18% Similarity=0.136 Sum_probs=164.0
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHhccCccc------CCCCCCCchHHHHHHhhCh-HHHHHHHHHHhhccCCCccccCCC
Q 038955 109 YVIELMYASAAFQMTDLVSILQDLFLYEAE------DAPVEDVIPILVAAFHCQL-NKLRFFCIQRIARSNLDNVCLEKE 181 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~------~~~~~~~~t~L~~A~~~~~-~~lv~~l~~~~~~~~~~~~~~~g~ 181 (380)
...++|+.|+..|..+++++|++.+.+... ...+..+.+||+.|+..+. ..+++.+++. ++++|.++.+|+
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~~G~ 87 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQDGS 87 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCCTTSC
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCCCCC
Confidence 457899999999999999999998865321 1115567899999988766 4688889888 779999999999
Q ss_pred chHHHHHHhhhhhhh-hcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCC
Q 038955 182 LPDEVSREIKSLRVK-SNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCS 256 (380)
Q Consensus 182 t~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~ 256 (380)
||||+|+..+...+. .+. ..+++++..+..|.||+|+|+..++.+++++|++.| ++ |..|+||||+|+..|+
T Consensus 88 TpLh~A~~~g~~~~v~~Ll---~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~ 164 (269)
T 4b93_B 88 SPLHVAALHGRADLIPLLL---KHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164 (269)
T ss_dssp CHHHHHHHTTCTTHHHHHH---HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHcCcHHHHHHHH---hcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 999999998887652 332 256778889999999999999999999999999999 44 5789999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCC-cccHHHHHHcCC
Q 038955 257 PKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTR-RKDYIEATKQGQ 335 (380)
Q Consensus 257 ~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~-~~~v~~l~~~g~ 335 (380)
.+++++|++.| +|+|.++..|+||||+|+..|+.++|++|+++|||++.+|.+|+||||+|+++++ .+.++.+...|.
T Consensus 165 ~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 165 HELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp GGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred HHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 99999999998 9999999999999999999999999999999999999999999999999987664 233344444444
Q ss_pred C
Q 038955 336 G 336 (380)
Q Consensus 336 ~ 336 (380)
.
T Consensus 244 ~ 244 (269)
T 4b93_B 244 S 244 (269)
T ss_dssp -
T ss_pred h
Confidence 3
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=267.91 Aligned_cols=219 Identities=17% Similarity=0.080 Sum_probs=193.5
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+||+|+..|..+++++|++.|.+++.+ +..|.||||+|+..|..+++++|++. +++++..+..|.||||+|
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A 132 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNA 132 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHH
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence 45689999999999999999999999999887 78899999999999999999999998 779999999999999999
Q ss_pred HHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHH
Q 038955 188 REIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKE 262 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~ 262 (380)
+..+...+ ..+.. .+..++.. ..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++
T Consensus 133 ~~~~~~~~v~~Ll~---~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 208 (285)
T 3d9h_A 133 CVSGSWDCVNLLLQ---HGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208 (285)
T ss_dssp HHHTCHHHHHHHHH---TTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHcCHHHHHHHHHH---CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 98887765 23332 44555543 45999999999999999999999999 4 45789999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHc-CCCCC
Q 038955 263 VLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQ-GQGTN 338 (380)
Q Consensus 263 Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~-g~~~~ 338 (380)
|++.+ ++++. +..|+||||+|+..++.+++++|+++|+|++.+|.+|+||||+|+ ++.+++++|+++ |++..
T Consensus 209 Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 209 LLESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp HHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred HHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 99998 99994 889999999999999999999999999999999999999999999 467999999998 65543
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.7e-35 Score=270.63 Aligned_cols=226 Identities=20% Similarity=0.117 Sum_probs=202.2
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHh-ccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDL-FLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEV 186 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~ 186 (380)
++..++|+.|+..|..+.++.++.. +.+++.+ +..|.||||+|+..|..+++++|++. +.+++..+..|.||||+
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHAS--DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS--STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHH
Confidence 5667899999999999988887764 7777776 78899999999999999999999998 77999999999999999
Q ss_pred HHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CCC-----------------------
Q 038955 187 SREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NVT----------------------- 241 (380)
Q Consensus 187 a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~----------------------- 241 (380)
|+..++..+ ..+. ..++.++..+..|.||||+|+..|+.+++++|+++| +++
T Consensus 98 A~~~g~~~iv~~Ll---~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~ 174 (351)
T 3utm_A 98 ACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174 (351)
T ss_dssp HHHTTCHHHHHHHH---HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHH
T ss_pred HHHCCCHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHH
Confidence 999888776 2333 256778889999999999999999999999999998 432
Q ss_pred ----------------------------------CCCchHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 038955 242 ----------------------------------LDDAYALHYAAAY---CSPKVFKEVLNMGLADLNLKDARGRTVLHV 284 (380)
Q Consensus 242 ----------------------------------~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~advn~~d~~g~tpLh~ 284 (380)
..|.||||+|+.. +..+++++|++.+ +++|.+|..|+||||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~ 253 (351)
T 3utm_A 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHV 253 (351)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHHHH
T ss_pred hhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHHHH
Confidence 4578999999999 5579999999998 9999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 285 AAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 285 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|++++...
T Consensus 254 A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 310 (351)
T 3utm_A 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999886543
No 16
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-35 Score=280.17 Aligned_cols=288 Identities=17% Similarity=0.140 Sum_probs=190.7
Q ss_pred CeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCCCcccccCCC
Q 038955 19 GKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPEVSACVDDAC 98 (380)
Q Consensus 19 ~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~~~~c~~~~c 98 (380)
...-+.|.++...+.+.++.++..+.+-........-.+.- .....-..+++||...+.......
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~------A~~~g~~~~v~~Ll~~g~~~~~~~--------- 77 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM------AARAGHTEVAKYLLQNKAKVNAKA--------- 77 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHH------HHHHTCHHHHHHHHHHTCCSSCCC---------
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH------HHHcCCHHHHHHHHhCCCCCCCCC---------
Confidence 34566777777777788888877653321000000000000 111111234555544333322221
Q ss_pred CCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCcccc
Q 038955 99 AHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCL 178 (380)
Q Consensus 99 ~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~ 178 (380)
..+.|+|++|+..|..+++++|+++|++++.. +..+.||||+|+..|..+++++|++. +.+.+..+.
T Consensus 78 ---------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~ 144 (437)
T 1n11_A 78 ---------KDDQTPLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEK--EASQACMTK 144 (437)
T ss_dssp ---------TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCT
T ss_pred ---------CCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCC
Confidence 34567888888888888888888888887766 66778888888888888888888877 556677777
Q ss_pred CCCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHH
Q 038955 179 EKELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAA 253 (380)
Q Consensus 179 ~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~ 253 (380)
.|.||||+|+..+...+ ..+. ..++.++..+..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+.
T Consensus 145 ~g~t~L~~A~~~g~~~~v~~Ll---~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 221 (437)
T 1n11_A 145 KGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221 (437)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHH---HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHH---hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence 78888888877776654 2222 245566667777777777777777777777777777 3 24567777777777
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHc
Q 038955 254 YCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQ 333 (380)
Q Consensus 254 ~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~ 333 (380)
.|+.+++++|++.+ ++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|++.|+.+++++|++.
T Consensus 222 ~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 222 QNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp TTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 77777777777776 77777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCC
Q 038955 334 GQGTN 338 (380)
Q Consensus 334 g~~~~ 338 (380)
|++++
T Consensus 301 g~~~~ 305 (437)
T 1n11_A 301 GVMVD 305 (437)
T ss_dssp TCCTT
T ss_pred CccCC
Confidence 66553
No 17
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.5e-35 Score=256.04 Aligned_cols=218 Identities=17% Similarity=0.080 Sum_probs=189.1
Q ss_pred hhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCc-cccCCCchHHHHH
Q 038955 110 VIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDN-VCLEKELPDEVSR 188 (380)
Q Consensus 110 ~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~-~~~~g~t~l~~a~ 188 (380)
+.|+||.|+..|..+++++|++.+.+..... +..|.||||+|+..+..++++++++..+..+++. .+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 3579999999999999999999998876521 7889999999999999999999999954456665 7889999999999
Q ss_pred Hhhhhhhh-hcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHH
Q 038955 189 EIKSLRVK-SNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEV 263 (380)
Q Consensus 189 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~L 263 (380)
..+...+. .+...+ ....++..+..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~~~Ll~~g-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HHCCHHHHHHHHSSS-SCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHhCC-CCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 88877653 222211 23778888999999999999999999999999999 4 457899999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHH
Q 038955 264 LNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLL-SKGACTSETTSDGKTAVAICRRMTRRKDYIEATK 332 (380)
Q Consensus 264 l~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~ 332 (380)
++.++++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|.|||++|+.. ++++++++
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 99888999999999999999999999999999999 89999999999999999999754 55555554
No 18
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-35 Score=255.05 Aligned_cols=213 Identities=14% Similarity=0.000 Sum_probs=184.5
Q ss_pred CcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhh-hcc
Q 038955 121 QMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVK-SNQ 199 (380)
Q Consensus 121 ~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-~~~ 199 (380)
|..+++++|++.|.+++... +..+.||||+|+..|..+++++|++. +.+++..+..|.||||+|+..+...+. .+.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45667777888888876542 56788999999999999999999988 668888889999999999887777652 222
Q ss_pred cccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCC
Q 038955 200 ESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKD 275 (380)
Q Consensus 200 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d 275 (380)
. ..+..++..+..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|++.+ ++++.+|
T Consensus 79 ~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~ 155 (223)
T 2f8y_A 79 R--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQN 155 (223)
T ss_dssp H--BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred H--cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence 1 123367788899999999999999999999999999 44 578999999999999999999999997 9999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCC
Q 038955 276 ARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 276 ~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~ 339 (380)
..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.++.+++++|+++|+....
T Consensus 156 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 156 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999986543
No 19
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.1e-35 Score=261.04 Aligned_cols=225 Identities=15% Similarity=0.014 Sum_probs=179.0
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhc-----------cCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCcc
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLF-----------LYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNV 176 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~-----------~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~ 176 (380)
..+.++||+|+..|..+.+..++..+ ..++.+ +..|.||||+|+..|..+++++|++. +.+++.+
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~ 88 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII 88 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSS--SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC--CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence 45678999999999976665544332 112223 67899999999999999999999998 6789999
Q ss_pred ccCCCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C--CCCCCchHHHHHH
Q 038955 177 CLEKELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N--VTLDDAYALHYAA 252 (380)
Q Consensus 177 ~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~--~~~~g~t~Lh~A~ 252 (380)
+..|.||||+|+..+...+ ..+. ..++.++.++..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll---~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~ 165 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHH---HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Confidence 9999999999999888776 2332 256788999999999999999999999999999999 4 4567999999999
Q ss_pred HcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHH
Q 038955 253 AYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATK 332 (380)
Q Consensus 253 ~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~ 332 (380)
..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++. |..|.||||+|++.++.+++++|++
T Consensus 166 ~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 166 RRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp HHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999998 99999999999999999999999999999999999995 8999999999999999999999999
Q ss_pred cCCCCCCcc
Q 038955 333 QGQGTNKDR 341 (380)
Q Consensus 333 ~g~~~~~~~ 341 (380)
.|++++...
T Consensus 244 ~gad~~~~d 252 (285)
T 3d9h_A 244 FGADTQAKN 252 (285)
T ss_dssp TTCCTTCCC
T ss_pred CCCCCCCcC
Confidence 999876543
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.6e-34 Score=264.57 Aligned_cols=224 Identities=17% Similarity=0.053 Sum_probs=190.5
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCC-------------------------------CCCCCchHHHHHHhhC
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDA-------------------------------PVEDVIPILVAAFHCQ 156 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~-------------------------------~~~~~~t~L~~A~~~~ 156 (380)
+.+.||||+|+..|..+++++|+++|++++.+. .+..|.||+|+|+..+
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~ 136 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 136 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence 356899999999999999999999998765321 1567889999999999
Q ss_pred hHHHHHHHHHHhhccCCCc----------cccCCCchHHHHHHhhhhhhh-hcccccccccCCCcCCcccchHHHHHHHc
Q 038955 157 LNKLRFFCIQRIARSNLDN----------VCLEKELPDEVSREIKSLRVK-SNQESEANIAEVDPMHAKIVSRIHKALDS 225 (380)
Q Consensus 157 ~~~lv~~l~~~~~~~~~~~----------~~~~g~t~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 225 (380)
..++++.+++. +++++. .+..|.||||+|+..++..+. .++ ...+++++.++..|.|++|+++..
T Consensus 137 ~~~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL--~~~gad~n~~d~~g~t~l~~~~~~ 212 (337)
T 4g8k_A 137 KVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLS 212 (337)
T ss_dssp CHHHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHH--HHSCCCTTCCCTTSCCHHHHHHHH
T ss_pred cHHHHHHHHHc--CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHH--hccCCCcCccCCCCCcHHHHHHHH
Confidence 99999999998 444443 345689999999998887752 222 124678999999999999998876
Q ss_pred CC----HHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 226 DD----IELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 226 ~~----~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
+. ..++++|+++| ++ |..|+||||+|+..|+.++++.|+..+|+++|.+|..|+||||+|+..|+.++|++|
T Consensus 213 ~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 213 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 53 46889999999 55 467999999999999999999999987799999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 298 LSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 298 l~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+++|||+|.+ ||||+|++.|+.++|++|+++|++++-.
T Consensus 293 l~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 293 CKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 9999999854 6999999999999999999999998653
No 21
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=249.93 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=197.1
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccc-cCCCchHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVC-LEKELPDEV 186 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~-~~g~t~l~~ 186 (380)
++..++|+.|+..|..+++++|++.|.+++.+ +..+.||||+|+..+..++++++++. +.+.+... ..|.||+|+
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhHH
Confidence 46678999999999999999999999998877 78899999999999999999999998 55666444 459999999
Q ss_pred HHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCC-HHHH
Q 038955 187 SREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCS-PKVF 260 (380)
Q Consensus 187 a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~-~~~v 260 (380)
|+..+...+ ..+. ..+..++..+..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+..++ .+++
T Consensus 83 A~~~~~~~~v~~Ll---~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 83 ATRQGHLSMVVQLM---KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHTCHHHHHHHH---HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHcCCHHHHHHHH---HcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence 998887765 2232 256778888999999999999999999999999999 4 46789999999997776 7899
Q ss_pred HHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCC
Q 038955 261 KEVLNMGLADLNLKDA-RGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGT 337 (380)
Q Consensus 261 ~~Ll~~~~advn~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~ 337 (380)
++|+..+ ++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.++.+++++|++.|+..
T Consensus 160 ~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 160 RLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 9999988 99999987 9999999999999999999999999999999999999999999999999999999998764
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.8e-34 Score=255.90 Aligned_cols=196 Identities=21% Similarity=0.107 Sum_probs=176.7
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccC-CCccccCCCchHHHHHHhhhhhhh-hcccccccccCCCcCCcccchHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSN-LDNVCLEKELPDEVSREIKSLRVK-SNQESEANIAEVDPMHAKIVSRI 219 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L 219 (380)
+.+|.||||+|+..|..+++++|++..+... ++.++..|.||||+|+..++..+. .+. ..++.++.++..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll---~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY---AAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH---HTTCCSSCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHH---HcCCCCCCCCCCCCCHH
Confidence 7889999999999999999999999844211 788899999999999998887762 332 25778889999999999
Q ss_pred HHHHHcCCHHHHHHHHHCC-C--------------------------------------------------CCCCCchHH
Q 038955 220 HKALDSDDIELLKLLLDVS-N--------------------------------------------------VTLDDAYAL 248 (380)
Q Consensus 220 ~~A~~~~~~~~~~~Ll~~g-~--------------------------------------------------~~~~g~t~L 248 (380)
|+|+..|+.+++++|+++| + .+..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 9999999999999999976 2 245789999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccH
Q 038955 249 HYAAAYCSPKVFKEVLNMGLADLNLKDA-RGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDY 327 (380)
Q Consensus 249 h~A~~~~~~~~v~~Ll~~~~advn~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v 327 (380)
|+|+..|+.+++++|++.| ++++.++. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v 241 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence 9999999999999999998 99999985 499999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcc
Q 038955 328 IEATKQGQGTNKDR 341 (380)
Q Consensus 328 ~~l~~~g~~~~~~~ 341 (380)
++|+++|++++...
T Consensus 242 ~~Ll~~ga~~~~~~ 255 (282)
T 1oy3_D 242 RLLRAHGAPEPEDG 255 (282)
T ss_dssp HHHHHTTCCCCCCC
T ss_pred HHHHHcCCCcCcCC
Confidence 99999999987655
No 23
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.7e-34 Score=260.26 Aligned_cols=220 Identities=19% Similarity=0.110 Sum_probs=190.4
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+||+|+..|..+++++|++.|++++.+ +..|.||||+|+..|..+++++|++. +.+++..+..|.||||+|
T Consensus 56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A 131 (351)
T 3utm_A 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEA 131 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence 46689999999999999999999999999887 78899999999999999999999999 779999999999999999
Q ss_pred HHhhhhhh-hhcccccccccCCC---------------------------------------------------cCCccc
Q 038955 188 REIKSLRV-KSNQESEANIAEVD---------------------------------------------------PMHAKI 215 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~---------------------------------------------------~~~~~g 215 (380)
+..+...+ ..+...+++....+ ..+..|
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (351)
T 3utm_A 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence 88877765 33333332222111 234568
Q ss_pred chHHHHHHHc---CCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 038955 216 VSRIHKALDS---DDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKR 288 (380)
Q Consensus 216 ~t~L~~A~~~---~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~ 288 (380)
.||||+|+.. +..+++++|++.| ++ |..|+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+..
T Consensus 212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALA 290 (351)
T ss_dssp CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHc
Confidence 8999999999 5589999999999 44 578999999999999999999999998 99999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 289 KEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 289 ~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
|+.+++++|+++|+|++.+|..|.||+++| +.+++++|.+.+..
T Consensus 291 ~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 291 GHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 999999999999999999999999999998 56788888777643
No 24
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.4e-35 Score=260.84 Aligned_cols=215 Identities=9% Similarity=-0.077 Sum_probs=193.8
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+||+|+..|..+++++|++.|++++.+ +|.||||+|+..|..+++++|++. +++++.++..|.||||+|
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHH
Confidence 46689999999999999999999999998864 589999999999999999999998 779999999999999999
Q ss_pred HHhhhhhh-hhcccccccccCCCcCCccc-chHHHHHHHcCCHHHHHHHHHCC-CC-CC-CCchHHHHHHHcCCHHHHHH
Q 038955 188 REIKSLRV-KSNQESEANIAEVDPMHAKI-VSRIHKALDSDDIELLKLLLDVS-NV-TL-DDAYALHYAAAYCSPKVFKE 262 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~g-~~-~~-~g~t~Lh~A~~~~~~~~v~~ 262 (380)
+..++..+ ..+.. .+++++.++..| .||||+|+..|+.+++++|+++| +. +. .|.||||+|+..|+.+++++
T Consensus 103 ~~~g~~~~v~~Ll~---~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 103 VDSGNMQTVKLFVK---KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHTTCHHHHHHHHH---HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHh---cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 98888765 33332 467788889999 89999999999999999999999 33 44 88999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCC
Q 038955 263 VLNMGLADLNLKDARGRTV-LHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 263 Ll~~~~advn~~d~~g~tp-Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~ 339 (380)
|+++| ++++.+|..|+|| ||+|+..|+.+++++|+++|+|++.+|. .|+..|+.+++++|+++|+++..
T Consensus 180 Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 180 LLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKS 249 (285)
T ss_dssp HHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTT
T ss_pred HHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCC
Confidence 99998 9999999999998 9999999999999999999999999883 56788999999999999976544
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=7.4e-34 Score=246.10 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=173.3
Q ss_pred hhhHHHHHHHcCcHHHHHHHHHh-ccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHH
Q 038955 110 VIELMYASAAFQMTDLVSILQDL-FLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSR 188 (380)
Q Consensus 110 ~~~~L~~A~~~~~~~lv~~ll~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~ 188 (380)
+.|+||.|+..|..+++++|++. |.+++.+ +..|.||||+|+..|..+++++|++..+ ++
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~--------------- 63 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEAAP--EL--------------- 63 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHCG--GG---------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHcCc--hh---------------
Confidence 46899999999999999999987 9998887 7889999999999999999999999833 21
Q ss_pred HhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CCCC----------------CCchHHHHH
Q 038955 189 EIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NVTL----------------DDAYALHYA 251 (380)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~----------------~g~t~Lh~A 251 (380)
.....+..|..|.||||+|+..|+.+++++|+++| +++. .|.||||+|
T Consensus 64 ---------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 128 (232)
T 2rfa_A 64 ---------------VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA 128 (232)
T ss_dssp ---------------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH
T ss_pred ---------------ccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHH
Confidence 01123456778999999999999999999999999 5432 699999999
Q ss_pred HHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH----HHHHhCCCCC------CCCCCCCCCHHHHHHhh
Q 038955 252 AAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVL----VTLLSKGACT------SETTSDGKTAVAICRRM 321 (380)
Q Consensus 252 ~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v----~~Ll~~gad~------~~~d~~g~tpl~~A~~~ 321 (380)
+..|+.+++++|++.| ++++.+|..|+||||+|+..++.+++ ++|+++|+++ +.+|..|.||||+|++.
T Consensus 129 ~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~ 207 (232)
T 2rfa_A 129 ACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207 (232)
T ss_dssp HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence 9999999999999998 99999999999999999999999988 9999999998 58999999999999999
Q ss_pred CCcccHHHHHHcCCCCCC
Q 038955 322 TRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 322 ~~~~~v~~l~~~g~~~~~ 339 (380)
|+.+++++|+++|..+..
T Consensus 208 g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 208 GNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHhcCccchh
Confidence 999999999999865543
No 26
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-34 Score=259.54 Aligned_cols=210 Identities=19% Similarity=0.078 Sum_probs=187.8
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHH
Q 038955 109 YVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSR 188 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~ 188 (380)
...++|+.|+..|..+++++|++.|++++.. +..|.||||+|+..|..+++++|++. +++++..+..|.||||+|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHH
Confidence 4578999999999999999999999999887 78899999999999999999999998 7799999999999999999
Q ss_pred Hhhhhhhh-hcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC--C--------------------------
Q 038955 189 EIKSLRVK-SNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS--N-------------------------- 239 (380)
Q Consensus 189 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~-------------------------- 239 (380)
..++..+. .+. ..++.++..+..|.||||+|+..++.++++.++... +
T Consensus 115 ~~g~~~~v~~Ll---~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (299)
T 1s70_B 115 SCGYLDIAEYLI---SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191 (299)
T ss_dssp HHTCHHHHHHHH---HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHH---hCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcc
Confidence 88887762 332 256778889999999999999999999998877532 1
Q ss_pred ---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 038955 240 ---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVA 316 (380)
Q Consensus 240 ---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 316 (380)
.+..|.||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||
T Consensus 192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~ 270 (299)
T 1s70_B 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270 (299)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 3467999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCccc
Q 038955 317 ICRRMTRRKD 326 (380)
Q Consensus 317 ~A~~~~~~~~ 326 (380)
+|.......+
T Consensus 271 ~A~~~~~~~l 280 (299)
T 1s70_B 271 VADEDILGYL 280 (299)
T ss_dssp SCCSGGGHHH
T ss_pred HHHHHHHHHH
Confidence 9976433333
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.4e-33 Score=242.70 Aligned_cols=193 Identities=20% Similarity=0.182 Sum_probs=178.5
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIH 220 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~ 220 (380)
+.++.||||+|+..|..+++++|++. +.+++..+..|.||||+|+..+...+ ..+. ..+..++.++..|.||||
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll---~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH---TTTCCCCCCCTTSCCHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHH---hCCCCCCCCCCCCCcHHH
Confidence 78899999999999999999999998 77899999999999999998887765 2332 266778889999999999
Q ss_pred HHHHcCCHHHHHHHHHCC--C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 038955 221 KALDSDDIELLKLLLDVS--N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLV 295 (380)
Q Consensus 221 ~A~~~~~~~~~~~Ll~~g--~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~ 295 (380)
+|+..|+.+++++|++.| + .+..|.||||+|+..++.+++++|++.| ++++.++..|.||||+|+..|+.++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 999999999999999998 3 3578999999999999999999999998 999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 296 TLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 296 ~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+|+++|++++.+|..|.||||+|++.++.+++++|++.|++++..
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 206 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999999988654
No 28
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=248.86 Aligned_cols=190 Identities=16% Similarity=0.078 Sum_probs=173.5
Q ss_pred CCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHHH
Q 038955 144 DVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKA 222 (380)
Q Consensus 144 ~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A 222 (380)
+|.||||+|+..|..++++++++. +.+++..+..|.||||+|+..++..+ ..+. ..+++++.++..|.||||+|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll---~~g~~~~~~~~~g~t~L~~A 76 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNA 76 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH---HTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH---HCCCCCCCCCCCCCCHHHHH
Confidence 478999999999999999999998 77999999999999999998888775 2332 25678899999999999999
Q ss_pred HHcCCHHHHHHHHHCC-C--CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 038955 223 LDSDDIELLKLLLDVS-N--VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLS 299 (380)
Q Consensus 223 ~~~~~~~~~~~Ll~~g-~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~ 299 (380)
+..|+.+++++|+++| + .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 77 CVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999 4 4567999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 300 KGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 300 ~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+|++++. |..|.||||+|++.++.+++++|++.|++++..
T Consensus 156 ~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~ 195 (261)
T 2xai_A 156 SGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAK 195 (261)
T ss_dssp HTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 9999995 889999999999999999999999999887543
No 29
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.7e-34 Score=250.29 Aligned_cols=198 Identities=17% Similarity=0.118 Sum_probs=147.9
Q ss_pred CcccCCCCCCCchHHHHHHhhC-------------hHHHHHHHHHHhhccCCCc-cccCCCchHHHHHHhhhhhh-hhcc
Q 038955 135 YEAEDAPVEDVIPILVAAFHCQ-------------LNKLRFFCIQRIARSNLDN-VCLEKELPDEVSREIKSLRV-KSNQ 199 (380)
Q Consensus 135 ~~~~~~~~~~~~t~L~~A~~~~-------------~~~lv~~l~~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~-~~~~ 199 (380)
+++.+ +.+|.||||+|+..| ..++++.+++. +.+++. .+..|.||||+|+..+...+ ..+.
T Consensus 2 dvn~~--d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 77 (253)
T 1yyh_A 2 DVNVR--GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLL 77 (253)
T ss_dssp ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCC--CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 44555 788999999999977 78999999998 556644 58999999999999888775 2332
Q ss_pred cccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC--C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCC
Q 038955 200 ESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS--N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLK 274 (380)
Q Consensus 200 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~ 274 (380)
..++.++.++..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+..|+.+++++|++.+ ++++.+
T Consensus 78 ---~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~ 153 (253)
T 1yyh_A 78 ---EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAV 153 (253)
T ss_dssp ---HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCB
T ss_pred ---HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCc
Confidence 256788899999999999999999999999999998 3 3578999999999999999999999988 999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 275 DARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 275 d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.|++++..
T Consensus 154 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 219 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219 (253)
T ss_dssp CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999887643
No 30
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.5e-33 Score=228.51 Aligned_cols=155 Identities=30% Similarity=0.333 Sum_probs=138.7
Q ss_pred hHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcC
Q 038955 147 PILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSD 226 (380)
Q Consensus 147 t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 226 (380)
+.|+.|+..|..++++.|++. + +++|.+|..|.||||+|+..+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--G-----------------------------------advn~~d~~g~t~l~~a~~~~ 48 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--G-----------------------------------ADVNASDSDGRTPLHHAAENG 48 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--T-----------------------------------CCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHC--C-----------------------------------CCCCCcCCCCCCHHHHHHHcC
Confidence 458889999999999999886 3 335667888999999999999
Q ss_pred CHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 038955 227 DIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGA 302 (380)
Q Consensus 227 ~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga 302 (380)
+.+++++|++.| ++ |..|+||||+|+..|+.+++++|++.| +|+|.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 49 ~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga 127 (169)
T 4gpm_A 49 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999 44 578999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCC
Q 038955 303 CTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 303 d~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~ 339 (380)
|++.+|.+|+||||+|++.|+.+++++|+++|++..+
T Consensus 128 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999999999999999997654
No 31
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=7.8e-33 Score=234.21 Aligned_cols=187 Identities=19% Similarity=0.103 Sum_probs=164.8
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHhcc-CcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 109 YVIELMYASAAFQMTDLVSILQDLFL-YEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~~~-~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
+..++|+.|+..|..+.++.++..+. +++.. +..+.||||+|+..+..+++++|++. +
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g----------------- 62 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEV--DTEGNTPLNIAVHNNDIEIAKALIDR--G----------------- 62 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--T-----------------
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc--C-----------------
Confidence 34678888888888888888887765 66665 67788888888888888888888876 3
Q ss_pred HHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC--C---CCCCCchHHHHHHHcCCHHHHHH
Q 038955 188 REIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS--N---VTLDDAYALHYAAAYCSPKVFKE 262 (380)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~---~~~~g~t~Lh~A~~~~~~~~v~~ 262 (380)
++++..+..|.||||+|+..|+.+++++|++.+ + .+..|.||||+|+..|+.+++++
T Consensus 63 ------------------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 124 (201)
T 3hra_A 63 ------------------ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124 (201)
T ss_dssp ------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHH
T ss_pred ------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHH
Confidence 234567778999999999999999999999554 3 45789999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcC
Q 038955 263 VLNMGLADLNLKDARGRTVLHVAAKRKE-----PAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQG 334 (380)
Q Consensus 263 Ll~~~~advn~~d~~g~tpLh~A~~~~~-----~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g 334 (380)
|++.++++++.+|..|+||||+|+..++ .+++++|+++|+|++.+|..|.||||+|++.|+.+++++|+++|
T Consensus 125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999889999999999999999999998 99999999999999999999999999999999999999999987
No 32
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-34 Score=267.36 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=190.7
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHH--------HHhhccCCCccccC
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCI--------QRIARSNLDNVCLE 179 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~--------~~~~~~~~~~~~~~ 179 (380)
..+.++||.|+..+. +++++|.... ++..+ ...|.||||+|+..|..+++++|+ +. +++++..+..
T Consensus 92 ~~g~t~L~~Aa~~~~-~~~~~L~~~~--~n~~d-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~d~~ 165 (373)
T 2fo1_E 92 PESPIKLHTEAAGSY-AITEPITRES--VNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMDCD 165 (373)
T ss_dssp --CCCHHHHHHHSSS-CCCSCCSTTT--TTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCCCTT
T ss_pred CCCccHHHHHhcCCc-hHHHHhcccc--ccccC-CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCCCCC
Confidence 456799999999665 7777776543 33331 368999999999999976666655 45 7799999999
Q ss_pred CCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-------CCCCCCchHHHHH
Q 038955 180 KELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-------NVTLDDAYALHYA 251 (380)
Q Consensus 180 g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-------~~~~~g~t~Lh~A 251 (380)
|.||||+|+..++..+ ..+. ..+++++..+..|.||||+|+..|+.+++++|++++ ..|..|.||||+|
T Consensus 166 g~TpL~~A~~~g~~~iv~~Ll---~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A 242 (373)
T 2fo1_E 166 ENTPLMLAVLARRRRLVAYLM---KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242 (373)
T ss_dssp SCCHHHHHHHHTCHHHHHHHH---HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHcChHHHHHHHH---HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence 9999999999888765 3333 257788899999999999999999999999999986 3468899999999
Q ss_pred HHcC---CHHHHHHHHHhCCCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHH
Q 038955 252 AAYC---SPKVFKEVLNMGLADLNL--------KDARGRTVLHVAAKRKEPAVLVTLLSKG-ACTSETTSDGKTAVAICR 319 (380)
Q Consensus 252 ~~~~---~~~~v~~Ll~~~~advn~--------~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~ 319 (380)
+..+ +.+++++|++.+ ++++. .|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+
T Consensus 243 ~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~ 321 (373)
T 2fo1_E 243 AHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA 321 (373)
T ss_dssp HHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred HHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence 9998 899999999998 99886 6779999999999999999999999875 999999999999999999
Q ss_pred hhCCcccHHHHHHcCCCCCCc
Q 038955 320 RMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 320 ~~~~~~~v~~l~~~g~~~~~~ 340 (380)
..|+.+++++|++.|++++..
T Consensus 322 ~~g~~~iv~~Ll~~gad~~~~ 342 (373)
T 2fo1_E 322 QEGRIEVVMYLIQQGASVEAV 342 (373)
T ss_dssp HHTCHHHHHHHHHTTCCSSCC
T ss_pred HcCCHHHHHHHHHcCCCccCC
Confidence 999999999999999988654
No 33
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.7e-32 Score=238.66 Aligned_cols=195 Identities=18% Similarity=0.098 Sum_probs=176.0
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHh--hccCCCccccCCCchHHHHHHhhhhhhh-hcccccccccCCCcCCcccchH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRI--ARSNLDNVCLEKELPDEVSREIKSLRVK-SNQESEANIAEVDPMHAKIVSR 218 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~ 218 (380)
+.+|.||||+|+..|..++++++++.. .+.+++..+..|.||||+|+..+...+. .+. ..+..++..+..|.||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll---~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV---TAGASPMALDRHGQTA 82 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH---HTTCCTTCCCTTSCCH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH---HcCCCccccCCCCCCH
Confidence 688999999999999999999998842 2568899999999999999988887652 332 2567788889999999
Q ss_pred HHHHHHcCCHHHHHHHHHCC-----C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcC
Q 038955 219 IHKALDSDDIELLKLLLDVS-----N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKD-ARGRTVLHVAAKRK 289 (380)
Q Consensus 219 L~~A~~~~~~~~~~~Ll~~g-----~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d-~~g~tpLh~A~~~~ 289 (380)
||+|+..|+.+++++|++.+ + .+..|.||||+|+..|+.+++++|++.+ ++++..+ ..|+||||+|+..|
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcC
Confidence 99999999999999999987 2 3568999999999999999999999998 9999998 88999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 290 EPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 290 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++..
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence 999999999999999999999999999999999999999999999988654
No 34
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=248.67 Aligned_cols=195 Identities=19% Similarity=0.096 Sum_probs=153.7
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhc------cCCCccccCCCchHHHHHHhhhhhh--hhcccccccccCCCcCCc
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIAR------SNLDNVCLEKELPDEVSREIKSLRV--KSNQESEANIAEVDPMHA 213 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~------~~~~~~~~~g~t~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~ 213 (380)
+..+.++|+.|+..|..+++++|++..+. ..++..+..+.||++.|........ ..+ ...++++|.+|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~L---l~~Gadvn~~d~ 84 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKV---PASGLGVNVTSQ 84 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTTCCCT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHH---HHCCCCCCCcCC
Confidence 55677999999999999999999986432 1255677889999999976655432 222 236788999999
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 038955 214 KIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRK 289 (380)
Q Consensus 214 ~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~ 289 (380)
.|.||||+|+..|+.+++++|++.| + .+..|.||+|+|+..++.+++++|++.+ +++|.+|..|+||||+|+..|
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCC
Confidence 9999999999999999999999999 4 4578999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 290 EPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 290 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+.+++++|+++|+|+|.+|..|.||||+|+..|+.++|++|++.|++++..
T Consensus 164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 999999999999999999999999999999999999999999999988654
No 35
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.4e-33 Score=246.74 Aligned_cols=199 Identities=18% Similarity=0.152 Sum_probs=171.9
Q ss_pred hhhHHHHHHHcCcHH----HHHHHHHhccCccc----CCCCCCCchHHHHHHhh---ChHHHHHHHHHHhhccCCCcccc
Q 038955 110 VIELMYASAAFQMTD----LVSILQDLFLYEAE----DAPVEDVIPILVAAFHC---QLNKLRFFCIQRIARSNLDNVCL 178 (380)
Q Consensus 110 ~~~~L~~A~~~~~~~----lv~~ll~~~~~~~~----~~~~~~~~t~L~~A~~~---~~~~lv~~l~~~~~~~~~~~~~~ 178 (380)
+.|+||.|+..|..+ +++++++.|.+++. + +..|.||||+|+.. |..+++++|++..+ +.+..+.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~--d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~--~~~~~~~ 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE--GSTGKTCLMKAVLNLQDGVNACIMPLLQIDK--DSGNPKP 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB--TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH--HTTCSSC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC--CCCCCCHHHHHHHccccchHHHHHHHHhcCC--cccchhh
Confidence 578999999999997 67788889999886 5 78999999999999 99999999999844 3322210
Q ss_pred CCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CCC---CC-----------
Q 038955 179 EKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NVT---LD----------- 243 (380)
Q Consensus 179 ~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~---~~----------- 243 (380)
.. .......|..|.||||+|+..|+.+++++|+++| +++ ..
T Consensus 78 -------------------~~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 133 (256)
T 2etb_A 78 -------------------LV-----NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCF 133 (256)
T ss_dssp -------------------GG-----GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCC
T ss_pred -------------------hc-----ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccc
Confidence 00 0112345678999999999999999999999999 554 33
Q ss_pred --CchHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHHHHhCCCCC-----
Q 038955 244 --DAYALHYAAAYCSPKVFKEVLN---MGLADLNLKDARGRTVLHVAAK--RKEPA-------VLVTLLSKGACT----- 304 (380)
Q Consensus 244 --g~t~Lh~A~~~~~~~~v~~Ll~---~~~advn~~d~~g~tpLh~A~~--~~~~~-------~v~~Ll~~gad~----- 304 (380)
|.||||+|+..|+.+++++|++ .| +++|.+|..|+||||+|+. .++.+ ++++|+++|+++
T Consensus 134 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~ 212 (256)
T 2etb_A 134 YFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212 (256)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc
Confidence 9999999999999999999999 66 9999999999999999999 88988 999999999999
Q ss_pred --CCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCC
Q 038955 305 --SETTSDGKTAVAICRRMTRRKDYIEATKQGQGT 337 (380)
Q Consensus 305 --~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~ 337 (380)
+.+|..|+||||+|+..|+.+++++|+++|.++
T Consensus 213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999999999999999999998654
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2e-33 Score=251.11 Aligned_cols=208 Identities=12% Similarity=0.010 Sum_probs=181.2
Q ss_pred cCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhc
Q 038955 120 FQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSN 198 (380)
Q Consensus 120 ~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~ 198 (380)
.+..++.++|.+.+ ++.+ +..|.||||+|+..|..+++++|++. +++++.. +|.||||+|+..++..+ ..+
T Consensus 10 ~~~~~v~~lL~~~~--~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 10 WKSKQLKSFLSSKD--TFKA--DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp CCHHHHHHHHHSTT--TTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred cCHHHHHHHHHhCC--CCcc--CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence 45567778887764 4444 78899999999999999999999998 5566666 59999999998887765 233
Q ss_pred ccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCC-chHHHHHHHcCCHHHHHHHHHhCCCCCCC
Q 038955 199 QESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDD-AYALHYAAAYCSPKVFKEVLNMGLADLNL 273 (380)
Q Consensus 199 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~advn~ 273 (380)
. ..+++++.++..|.||||+|+..|+.+++++|+++| + .+..| .||||+|+..|+.+++++|++.+ +++..
T Consensus 82 l---~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~ 157 (285)
T 3kea_A 82 L---FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFD 157 (285)
T ss_dssp H---HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS-CTTCC
T ss_pred H---HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC-Ccccc
Confidence 2 257788999999999999999999999999999999 4 45677 79999999999999999999998 66632
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 274 KDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTA-VAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 274 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp-l~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
. ..|+||||+|+..|+.+++++|+++|+|++.+|..|.|| ||+|+..++.+++++|++.|++++..
T Consensus 158 ~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 158 L-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp C-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred c-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 2 289999999999999999999999999999999999998 99999999999999999999988765
No 37
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.5e-34 Score=246.49 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=168.5
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhc--cCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIAR--SNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRI 219 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 219 (380)
+.+|.||||+|+..|..++++.+++.... .+++..+..|.||||+|+..+...+...+ ...++.++.++..|.|||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L--l~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL--LGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCC--CSCCCCSCCCCTTCCCHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHH--HHcCCCCCCcCCCCCCHH
Confidence 67788999999999988877777766432 36888888999999999888877652222 125677888999999999
Q ss_pred HHHHHcCCHHHHHHHHHCC-C---------CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHc
Q 038955 220 HKALDSDDIELLKLLLDVS-N---------VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDA-RGRTVLHVAAKR 288 (380)
Q Consensus 220 ~~A~~~~~~~~~~~Ll~~g-~---------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~-~g~tpLh~A~~~ 288 (380)
|+|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++|++.| ++++.++. .|+||||+|+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHc
Confidence 9999999999999999987 2 3567999999999999999999999998 99999997 999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCC
Q 038955 289 KEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTN 338 (380)
Q Consensus 289 ~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~ 338 (380)
|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|+++.
T Consensus 162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 99999999999999999999999999999999999999999999999765
No 38
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.3e-32 Score=233.66 Aligned_cols=194 Identities=16% Similarity=0.044 Sum_probs=169.5
Q ss_pred CchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhcccccccccCCCc-CCcccchHHHHH
Q 038955 145 VIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIAEVDP-MHAKIVSRIHKA 222 (380)
Q Consensus 145 ~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~t~L~~A 222 (380)
|.||||.|+..|..++++.+++.... ..+..+..|.||||+|+..+...+ ..+...++ ...++. .+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME-NVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCT-TCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccc-cccccccCCCCCCCHHHHH
Confidence 56899999999999999999998432 334588999999999998888776 33332221 134444 788999999999
Q ss_pred HHcCCHHHHHHHHHCC---C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 038955 223 LDSDDIELLKLLLDVS---N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVT 296 (380)
Q Consensus 223 ~~~~~~~~~~~Ll~~g---~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~ 296 (380)
+..|+.+++++|+++| + .+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999987 2 3578999999999999999999999998 9999999999999999999999999999
Q ss_pred HHhCC-CCCCCCCCCCCCHHHHHHhhCCcccHHHHH-HcCCCCCCcc
Q 038955 297 LLSKG-ACTSETTSDGKTAVAICRRMTRRKDYIEAT-KQGQGTNKDR 341 (380)
Q Consensus 297 Ll~~g-ad~~~~d~~g~tpl~~A~~~~~~~~v~~l~-~~g~~~~~~~ 341 (380)
|+++| ++++.+|..|+||||+|+..++.++++.|+ +.|++++...
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 99999 999999999999999999999999999999 8999887644
No 39
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.9e-32 Score=232.50 Aligned_cols=193 Identities=17% Similarity=0.059 Sum_probs=174.5
Q ss_pred CCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHH
Q 038955 143 EDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 143 ~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
..+.++|+.|+..|..+.++.+++.... ..+..+..|.||||+|+..+...+ ..+. ..+..++.++..|.||||+
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll---~~g~~~~~~~~~g~t~L~~ 79 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHI 79 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHH---HTTCCSCCCCTTSCCHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHH---HhCCCCCCcCCCCCCHHHH
Confidence 4567899999999999999999987432 467788999999999998888775 2332 2567788999999999999
Q ss_pred HHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
|+..|+.+++++|+++| + .|..|.||||+|+..++.+++++|++.+ ++++.++..|.||||+|+..|+.+++++|
T Consensus 80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 99999999999999999 4 4678999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 298 LSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 298 l~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+++|++++.+|..|.||||+|+..++.+++++|++.|++++..
T Consensus 159 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 201 (231)
T 3aji_A 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201 (231)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred HhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
Confidence 9999999999999999999999999999999999999988653
No 40
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-31 Score=220.27 Aligned_cols=156 Identities=24% Similarity=0.216 Sum_probs=139.3
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHh
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREI 190 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~ 190 (380)
-+.|+.|++.|..+++++|++.|++++.+ +..|.||||+|+..+..++++.+++. +
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~~~~~~~ll~~--g-------------------- 60 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGHKEVVKLLISK--G-------------------- 60 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--T--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhc--c--------------------
Confidence 45688999999999999999999999988 88999999999999999999999876 3
Q ss_pred hhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHh
Q 038955 191 KSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNM 266 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 266 (380)
++++.+|..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|++.
T Consensus 61 ---------------ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ 125 (169)
T 4gpm_A 61 ---------------ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125 (169)
T ss_dssp ---------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ---------------cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 235567788999999999999999999999999 54 57899999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 038955 267 GLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSE 306 (380)
Q Consensus 267 ~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~ 306 (380)
| ++++.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus 126 g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 126 G-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred C-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 8 99999999999999999999999999999999999874
No 41
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=9.3e-33 Score=245.32 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=165.4
Q ss_pred hhhhhhHHHHHHHcCcHHHHHHHHHh----ccCcccC--CCCCCCchHHHHHHhh---ChHHHHHHHHHHhhccCCCccc
Q 038955 107 INYVIELMYASAAFQMTDLVSILQDL----FLYEAED--APVEDVIPILVAAFHC---QLNKLRFFCIQRIARSNLDNVC 177 (380)
Q Consensus 107 ~~~~~~~L~~A~~~~~~~lv~~ll~~----~~~~~~~--~~~~~~~t~L~~A~~~---~~~~lv~~l~~~~~~~~~~~~~ 177 (380)
...+.++|+.|+..|..++++.|++. +.+++.. ..+..|.||||+|+.. |..+++++|++..+. .+..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~--~~~~- 86 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK--TDSL- 86 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH--TTCH-
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc--ccch-
Confidence 45677899999999998888877764 4444321 1156788999999976 888899999888442 1110
Q ss_pred cCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CCC---C-----------
Q 038955 178 LEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NVT---L----------- 242 (380)
Q Consensus 178 ~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~---~----------- 242 (380)
.. .. .......|..|.||||+|+..|+.+++++|+++| +++ .
T Consensus 87 ----------------~~--~i-----~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~ 143 (273)
T 2pnn_A 87 ----------------KQ--FV-----NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRP 143 (273)
T ss_dssp ----------------HH--HH-----TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSC
T ss_pred ----------------hH--Hh-----hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccc
Confidence 00 00 0112345678999999999999999999999999 544 3
Q ss_pred ---CCchHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCCC--
Q 038955 243 ---DDAYALHYAAAYCSPKVFKEVLN---MGLADLNLKDARGRTVLHVAAKRKE---------PAVLVTLLSKGACTS-- 305 (380)
Q Consensus 243 ---~g~t~Lh~A~~~~~~~~v~~Ll~---~~~advn~~d~~g~tpLh~A~~~~~---------~~~v~~Ll~~gad~~-- 305 (380)
.|.||||+|+..|+.+++++|++ .| ++++.+|..|+||||+|+..|+ .+++++|+++|++++
T Consensus 144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~ 222 (273)
T 2pnn_A 144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222 (273)
T ss_dssp CCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence 69999999999999999999999 66 9999999999999999999988 899999999999997
Q ss_pred -----CCCCCCCCHHHHHHhhCCcccHHHHHHcCC-CCCC
Q 038955 306 -----ETTSDGKTAVAICRRMTRRKDYIEATKQGQ-GTNK 339 (380)
Q Consensus 306 -----~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~-~~~~ 339 (380)
.+|..|.||||+|+..|+.+++++|+++|+ +|..
T Consensus 223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~ 262 (273)
T 2pnn_A 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC 262 (273)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----
T ss_pred cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh
Confidence 489999999999999999999999999998 5543
No 42
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=6.4e-32 Score=242.95 Aligned_cols=219 Identities=13% Similarity=0.055 Sum_probs=183.2
Q ss_pred HHHcCcHHHHHHHHHhccCcccCC-------CCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHH
Q 038955 117 SAAFQMTDLVSILQDLFLYEAEDA-------PVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSRE 189 (380)
Q Consensus 117 A~~~~~~~lv~~ll~~~~~~~~~~-------~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~ 189 (380)
++..+..+.+..++....++.... ....+.|+|+.|+..|..+++++|++. +.+++..+..|.||||+|+.
T Consensus 5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHH
Confidence 344445555555555443332211 123567999999999999999999998 77999999999999999999
Q ss_pred hhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHH
Q 038955 190 IKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVL 264 (380)
Q Consensus 190 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll 264 (380)
.++..+ ..+. ..+++++..+..|.||||+|+..|+.+++++|+++| + .|..|.||||+|+..++.++++.++
T Consensus 83 ~g~~~~v~~Ll---~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 83 DDNVDMVKFLV---ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp TTCHHHHHHHH---HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHH---HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 888776 2333 267788999999999999999999999999999999 4 4678999999999999999998888
Q ss_pred HhCCCCCC--------------------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 038955 265 NMGLADLN--------------------------LKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318 (380)
Q Consensus 265 ~~~~advn--------------------------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 318 (380)
...+++++ ..+..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A 239 (299)
T 1s70_B 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239 (299)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred hhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 76545543 3567899999999999999999999999999999999999999999
Q ss_pred HhhCCcccHHHHHHcCCCCCCc
Q 038955 319 RRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 319 ~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+..|+.+++++|++.|++++..
T Consensus 240 ~~~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 240 AHWGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCC
T ss_pred HhcCCHHHHHHHHHcCCCCCCc
Confidence 9999999999999999887653
No 43
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.98 E-value=2.7e-32 Score=252.42 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=172.5
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhcccccccccCCCcCCcccchHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIH 220 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~ 220 (380)
+..+.||||+|+..|..+++++|++. +.+++..+..|.||||+|+..++..+ ..+... ++ +..+..|.||||
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~--~~~~~~g~t~L~ 89 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV---GE--VHSLWHGQKPIH 89 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH---CC--CCCCBTTBCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC---CC--CccccCCCCHHH
Confidence 67889999999999999999999998 77999999999999999999888876 333333 33 333458999999
Q ss_pred HHHHcCCHHHHHHHHHC----C-C--------------------CCCCCchHHHHHHHcC--CHHHHHHHHHhCCCCCCC
Q 038955 221 KALDSDDIELLKLLLDV----S-N--------------------VTLDDAYALHYAAAYC--SPKVFKEVLNMGLADLNL 273 (380)
Q Consensus 221 ~A~~~~~~~~~~~Ll~~----g-~--------------------~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~advn~ 273 (380)
+|+..|+.+++++|++. | + .|..|.||||+|+..| +.+++++|++.| ++++.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~ 168 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTA 168 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcc
Confidence 99999999999999998 4 2 3457999999999999 999999999998 99999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 274 KDARGRTVLHVAAKRKEPAVLVTLLSKGAC-----TSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 274 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad-----~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
+|..|+||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|++.|++++..
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~ 240 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999988644
No 44
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.6e-32 Score=239.65 Aligned_cols=204 Identities=17% Similarity=0.158 Sum_probs=171.1
Q ss_pred hhhhHHHHHHHcCcHH----HHHHHHHhccCcccCCC--CCCCchHHHHHH---hhChHHHHHHHHHHhhccCCCccccC
Q 038955 109 YVIELMYASAAFQMTD----LVSILQDLFLYEAEDAP--VEDVIPILVAAF---HCQLNKLRFFCIQRIARSNLDNVCLE 179 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~----lv~~ll~~~~~~~~~~~--~~~~~t~L~~A~---~~~~~~lv~~l~~~~~~~~~~~~~~~ 179 (380)
+..++|+.|+..|..+ +++++++.+.+++.... +..|.||||+|+ ..|..+++++|++..+. ....
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~--~~~~--- 78 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK--TGNM--- 78 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH--TTCH---
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc--ccch---
Confidence 5578999999999999 45556668888876521 267999999999 67999999999998542 1110
Q ss_pred CCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CCC-----------------
Q 038955 180 KELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NVT----------------- 241 (380)
Q Consensus 180 g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~----------------- 241 (380)
.. + ....++..|..|.||||+|+..|+.+++++|+++| +++
T Consensus 79 --------------~~-~------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 137 (260)
T 3jxi_A 79 --------------RE-F------INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137 (260)
T ss_dssp --------------HH-H------HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred --------------Hh-h------hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence 00 0 01234556779999999999999999999999999 543
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCC-----
Q 038955 242 LDDAYALHYAAAYCSPKVFKEVLN---MGLADLNLKDARGRTVLHVAAKRKE---------PAVLVTLLSKGACT----- 304 (380)
Q Consensus 242 ~~g~t~Lh~A~~~~~~~~v~~Ll~---~~~advn~~d~~g~tpLh~A~~~~~---------~~~v~~Ll~~gad~----- 304 (380)
..|+||||+|+..|+.+++++|++ .| ++++.+|..|+||||+|+..++ .+++++|+++|+++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~ 216 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQ-ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccC-CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence 369999999999999999999999 66 9999999999999999998887 79999999999999
Q ss_pred --CCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCC
Q 038955 305 --SETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 305 --~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~ 339 (380)
+.+|..|.||||+|++.|+.+++++|+++|.++..
T Consensus 217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 67999999999999999999999999999865543
No 45
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=7.5e-31 Score=225.67 Aligned_cols=191 Identities=17% Similarity=0.080 Sum_probs=173.0
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+|++|+..|..+++++|++.|.+++.+ +..+.||||+|+..+..++++++++... .+++..+..|.||+|+|
T Consensus 23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A 99 (223)
T 2f8y_A 23 RTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLILA 99 (223)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBTT-SCTTCCCTTCCCHHHHH
T ss_pred CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCcHHHHH
Confidence 45689999999999999999999999999887 7889999999999999999999999732 27888999999999999
Q ss_pred HHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHH
Q 038955 188 REIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKE 262 (380)
Q Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~ 262 (380)
+..+...+ ..+. ..+..++..+..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++
T Consensus 100 ~~~~~~~~~~~Ll---~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 176 (223)
T 2f8y_A 100 ARLAVEGMLEDLI---NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176 (223)
T ss_dssp HHHTCHHHHHHHH---HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHhCcHHHHHHHH---HcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence 98887765 2222 266778889999999999999999999999999999 44 5789999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 038955 263 VLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTS 305 (380)
Q Consensus 263 Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~ 305 (380)
|++.+ ++++.+|..|.||||+|+..++.+++++|+++|+...
T Consensus 177 Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 177 LLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99998 9999999999999999999999999999999999764
No 46
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=9.5e-32 Score=245.02 Aligned_cols=196 Identities=14% Similarity=-0.016 Sum_probs=161.4
Q ss_pred hHHHHHHHcCcHHHHHHHHHhccCccc-CCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHh
Q 038955 112 ELMYASAAFQMTDLVSILQDLFLYEAE-DAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREI 190 (380)
Q Consensus 112 ~~L~~A~~~~~~~lv~~ll~~~~~~~~-~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~ 190 (380)
..++.|+..+..+++++|++.|++++. + +..|.||||+|+..|..+++++|++. +++++.++..|+||||+|+..
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~--d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPV--DEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCC--STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCccccc--CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHh
Confidence 456888888999999999999999988 6 78999999999999999999999999 779999999999999999987
Q ss_pred hh---hhh-hhcccccccccCCCcCCcccchHHHHHHH----cCCHHHHHHHHHC--------------------C-C--
Q 038955 191 KS---LRV-KSNQESEANIAEVDPMHAKIVSRIHKALD----SDDIELLKLLLDV--------------------S-N-- 239 (380)
Q Consensus 191 ~~---~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~--------------------g-~-- 239 (380)
++ ... ..+... ..+.++.+|..|.||||+|+. .|+.+++++|++. | +
T Consensus 175 g~~~~~~~~~~ll~~--~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 175 VNNYDSGTFEALLDY--LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp SHHHHTTCHHHHHHH--HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred cccccHHHHHHHHHh--hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 65 221 111111 124578889999999999999 8999999999986 5 2
Q ss_pred -CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 038955 240 -VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318 (380)
Q Consensus 240 -~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 318 (380)
.+..|+||||+|+. +++|+.. ++|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|+||||+|
T Consensus 253 ~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 253 DKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp -------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred cccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 45789999999985 8999987 5899999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q 038955 319 RRMT 322 (380)
Q Consensus 319 ~~~~ 322 (380)
++.|
T Consensus 324 ~~~g 327 (327)
T 1sw6_A 324 AGLE 327 (327)
T ss_dssp CC--
T ss_pred HhcC
Confidence 8764
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.7e-32 Score=238.26 Aligned_cols=208 Identities=13% Similarity=0.039 Sum_probs=177.4
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhcc----CcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCch
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFL----YEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELP 183 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~----~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~ 183 (380)
..+.|+||+|+..|..+++++|++.+. +++.+ +..|.||||+|+..+..+++++|++. +++++..+..|.||
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTP 81 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC--CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 466899999999999999999887765 56665 77899999999999999999999998 77999999999999
Q ss_pred HHHHHHhhhhhh-hhccccccc---ccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CC-CCchHHHHHHHc
Q 038955 184 DEVSREIKSLRV-KSNQESEAN---IAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TL-DDAYALHYAAAY 254 (380)
Q Consensus 184 l~~a~~~~~~~~-~~~~~~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~-~g~t~Lh~A~~~ 254 (380)
||+|+..+...+ ..+...+.. ...++..+..|.||||+|+..|+.+++++|+++| ++ +. .|+||||+|+..
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 999998887765 333333322 2335677889999999999999999999999999 54 44 899999999999
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHh
Q 038955 255 CSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTS--ETTSDGKTAVAICRR 320 (380)
Q Consensus 255 ~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpl~~A~~ 320 (380)
|+.+++++|++.| ++++.+|..|+||||+|+..++.+++++|+++|++.. ..+..|.||.+.+..
T Consensus 162 ~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 162 QNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp TCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred CCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 9999999999998 9999999999999999999999999999999999876 788899998765543
No 48
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=232.49 Aligned_cols=183 Identities=19% Similarity=0.088 Sum_probs=145.5
Q ss_pred HHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhccccccccc-CCCcCCcccchHHHHHH--
Q 038955 148 ILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIA-EVDPMHAKIVSRIHKAL-- 223 (380)
Q Consensus 148 ~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~~~g~t~L~~A~-- 223 (380)
++|.|+..+..+.++.+++......++..|..|.||||+|+..+...+ ..+.. .++ .++..+..|.||||+|+
T Consensus 79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~---~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD---SGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TSCCCTTCCCTTSCCHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHH---CCCCcCCCCCCCCCCHHHHHHHH
Confidence 345555555555555555443333355555556666666555555443 11111 233 57778888999999999
Q ss_pred ---HcCCHHHHHHHHHCC----CCCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 038955 224 ---DSDDIELLKLLLDVS----NVTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVT 296 (380)
Q Consensus 224 ---~~~~~~~~~~Ll~~g----~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~ 296 (380)
..++.+++++|++.| ..+..|+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 668899999999999 23567999999999999999999999998 9999999999999999999999999999
Q ss_pred HHh-CCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcC
Q 038955 297 LLS-KGACTSETTSDGKTAVAICRRMTRRKDYIEATKQG 334 (380)
Q Consensus 297 Ll~-~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g 334 (380)
|++ .|+|++.+|..|.||||+|+..|+.+++++|++++
T Consensus 235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999 89999999999999999999999999999999875
No 49
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=7e-30 Score=214.55 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=140.0
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
+..|.||||+|+..|..++++++++. + ..++.++..|.||||+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~--~-----------------------------------~~~~~~~~~g~t~L~~ 74 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVEN--F-----------------------------------DKLEDKDIEGSTALIW 74 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHH--H-----------------------------------CCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHh--c-----------------------------------cccccccccCccHHHH
Confidence 56677777777777777777777775 2 2355677789999999
Q ss_pred HHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
|+..|+.+++++|+++| + .|..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus 75 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (192)
T 2rfm_A 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKL 153 (192)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999 4 4578999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCC
Q 038955 298 LSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQ 335 (380)
Q Consensus 298 l~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~ 335 (380)
+++|++++.+|..|.||||+|+..|+.+++++|++.|.
T Consensus 154 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191 (192)
T ss_dssp HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence 99999999999999999999999999999999998763
No 50
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=219.86 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=171.5
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhcccccccccCCCc-CCcccchHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEANIAEVDP-MHAKIVSRI 219 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~t~L 219 (380)
++.+.++|+.|+..|..++++++++. +.+++..+..|.||||+|+..+...+ ..+.. .+..++. .+..|.|||
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYIS---KGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCBTTTTBCHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH---cCCcchhhcCCcCCChh
Confidence 56788999999999999999999998 67899999999999999998888765 23332 3444443 345599999
Q ss_pred HHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-HHHH
Q 038955 220 HKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKE-PAVL 294 (380)
Q Consensus 220 ~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~-~~~v 294 (380)
|+|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++|++.+ ++++.++..|.||||+|+..++ .+++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHHH
Confidence 9999999999999999999 4 4578999999999999999999999998 9999999999999999997766 8999
Q ss_pred HHHHhCCCCCCCCCC-CCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 295 VTLLSKGACTSETTS-DGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 295 ~~Ll~~gad~~~~d~-~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
++|++.|++++..+. .|.||||+|+..++.+++++|++.|++++..
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 206 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999997 9999999999999999999999999988654
No 51
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=2.7e-29 Score=206.53 Aligned_cols=155 Identities=24% Similarity=0.222 Sum_probs=141.1
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
...+.++|+.|+..|..+++++|++. + .+++.++..|.||||+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g-----------------------------------~~~~~~~~~g~t~L~~ 53 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN--G-----------------------------------ADVNAEDASGWTPLHL 53 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT--T-----------------------------------CCTTCCCTTSCCHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC--C-----------------------------------CCCCCCCCCCCCHHHH
Confidence 44567899999999999999999886 3 2245567789999999
Q ss_pred HHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
|+..|+.+++++|+++| + .|..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus 54 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 132 (169)
T 2y1l_E 54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVL 132 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999 4 4578999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcC
Q 038955 298 LSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQG 334 (380)
Q Consensus 298 l~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g 334 (380)
+++|++++.+|..|.|||++|+..++.+++++|++.|
T Consensus 133 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999887
No 52
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.4e-29 Score=219.14 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=139.1
Q ss_pred CchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHH
Q 038955 145 VIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALD 224 (380)
Q Consensus 145 ~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 224 (380)
|.||||+|+..|..++++.+++. .+..++.+|..|.||||+|+.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~------------------------------------~g~~~~~~~~~g~t~L~~A~~ 46 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKF------------------------------------EGCEVHQRGAMGETALHIAAL 46 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTT------------------------------------TCSCTTCCCTTSCCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHh------------------------------------cCCCcccCCCCCCCHHHHHHH
Confidence 55777777777777777766653 245577788999999999999
Q ss_pred cCCHHHHHHHHHCC-CC--------CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-------------CCCcHH
Q 038955 225 SDDIELLKLLLDVS-NV--------TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDA-------------RGRTVL 282 (380)
Q Consensus 225 ~~~~~~~~~Ll~~g-~~--------~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~-------------~g~tpL 282 (380)
.|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|++.+ ++++..+. .|+|||
T Consensus 47 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~g~t~L 125 (232)
T 2rfa_A 47 YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPL 125 (232)
T ss_dssp TTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCTTCSCCCCSSHH
T ss_pred cCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCC-CCCCcccCCcceeecccccccCCCCHH
Confidence 99999999999998 32 458999999999999999999999998 99998865 799999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccH----HHHHHcCCCCC
Q 038955 283 HVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDY----IEATKQGQGTN 338 (380)
Q Consensus 283 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v----~~l~~~g~~~~ 338 (380)
|+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+++ ++|++.|+++.
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 999999999999999999999999999999999999999999988 99999998763
No 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.4e-29 Score=207.81 Aligned_cols=156 Identities=16% Similarity=0.090 Sum_probs=141.1
Q ss_pred CCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHH
Q 038955 144 DVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKAL 223 (380)
Q Consensus 144 ~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 223 (380)
.+.||||.|+..|..++++++++. + ..++.++..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~--~-----------------------------------~~~~~~~~~g~t~L~~A~ 44 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ--E-----------------------------------NVINHTDEEGFTPLMWAA 44 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH--S-----------------------------------SCTTCCCTTSCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc--C-----------------------------------CCcCCCCCCCCCHHHHHH
Confidence 356778888888888888888776 2 235667888999999999
Q ss_pred HcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 038955 224 DSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLS 299 (380)
Q Consensus 224 ~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~ 299 (380)
..|+.+++++|+++| + .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|++
T Consensus 45 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 45 AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123 (167)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999 4 4578999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCC
Q 038955 300 KGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGT 337 (380)
Q Consensus 300 ~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~ 337 (380)
+|++++.+|..|.||||+|+..|+.+++++|++++.+.
T Consensus 124 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987543
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.6e-29 Score=206.21 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=138.5
Q ss_pred CCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHH
Q 038955 143 EDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKA 222 (380)
Q Consensus 143 ~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 222 (380)
+...++|+.|+..|..++++++++. + ..++.++..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~-----------------------------------~~~~~~~~~g~t~L~~A 45 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN--N-----------------------------------VNVNAQNGFGRTALQVM 45 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS--C-----------------------------------CCTTCCCTTSCCHHHHC
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC--C-----------------------------------CCccccCccCccHHHHH
Confidence 4566889999999999888888764 2 33556777899999999
Q ss_pred HHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 038955 223 LDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLL 298 (380)
Q Consensus 223 ~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll 298 (380)
+. |+.+++++|+++| ++ |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+
T Consensus 46 ~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 123 (162)
T 1ihb_A 46 KL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123 (162)
T ss_dssp CS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred Hc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99 9999999999999 44 578999999999999999999999998 999999999999999999999999999999
Q ss_pred hCCCC-CCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 299 SKGAC-TSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 299 ~~gad-~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
++|++ ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 124 ~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99998 699999999999999999999999999999974
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=9.3e-30 Score=209.87 Aligned_cols=159 Identities=16% Similarity=0.086 Sum_probs=141.1
Q ss_pred chHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHc
Q 038955 146 IPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDS 225 (380)
Q Consensus 146 ~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 225 (380)
.+|||.|+..|..++++.+++.. +..++.++..|.||||+|+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~------------------------------------~~~~~~~~~~g~t~L~~A~~~ 46 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG------------------------------------DNLVNKPDERGFTPLIWASAF 46 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC------------------------------------SGGGGCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC------------------------------------cccccCCCCCCCCHHHHHHHc
Confidence 46788888888888887777651 122456788999999999999
Q ss_pred CCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 038955 226 DDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKG 301 (380)
Q Consensus 226 ~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g 301 (380)
|+.+++++|+++| + .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 47 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (172)
T 3v30_A 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125 (172)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999 4 4578999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 302 ACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 302 ad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
++++.+|..|.||||+|+..++.+++++|+++|++.....
T Consensus 126 a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165 (172)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999987665543
No 56
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=6.9e-30 Score=226.76 Aligned_cols=186 Identities=14% Similarity=0.114 Sum_probs=146.4
Q ss_pred hhhhhhHHHHHHHc---CcHHHHHHHHHhccCc-------cc--CCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCC
Q 038955 107 INYVIELMYASAAF---QMTDLVSILQDLFLYE-------AE--DAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLD 174 (380)
Q Consensus 107 ~~~~~~~L~~A~~~---~~~~lv~~ll~~~~~~-------~~--~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~ 174 (380)
...+.|+||+|+.. |..+++++|++.|++. +. ...+..+.||||+|+..|..+++++|++. +++++
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~ 128 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQ 128 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcC
Confidence 35778999999987 9999999999998652 21 11256899999999999999999999998 66888
Q ss_pred ccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHH---CC-C---CCCCCchH
Q 038955 175 NVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLD---VS-N---VTLDDAYA 247 (380)
Q Consensus 175 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g-~---~~~~g~t~ 247 (380)
..+..+.. .....+..+..|.||||+|+..|+.+++++|++ .| + .|..|+||
T Consensus 129 ~~~~~~~~---------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tp 187 (273)
T 2pnn_A 129 AAANGDFF---------------------KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187 (273)
T ss_dssp CCBCSGGG---------------------SSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCH
T ss_pred cccccccc---------------------ccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcH
Confidence 77765411 111234566789999999999999999999999 88 4 46789999
Q ss_pred HHHHHHcCC---------HHHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCC
Q 038955 248 LHYAAAYCS---------PKVFKEVLNMGLADLN-------LKDARGRTVLHVAAKRKEPAVLVTLLSKGA-CTSETTSD 310 (380)
Q Consensus 248 Lh~A~~~~~---------~~~v~~Ll~~~~advn-------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~ 310 (380)
||+|+..|+ .+++++|++.| +++| .+|..|+||||+|+..|+.+++++|+++|| |+......
T Consensus 188 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~ 266 (273)
T 2pnn_A 188 LHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAA 266 (273)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhh
Confidence 999999988 79999999998 9997 489999999999999999999999999999 88888877
Q ss_pred CCCHHH
Q 038955 311 GKTAVA 316 (380)
Q Consensus 311 g~tpl~ 316 (380)
+.+|-+
T Consensus 267 ~~~~~~ 272 (273)
T 2pnn_A 267 AHHHHH 272 (273)
T ss_dssp ------
T ss_pred hhhccC
Confidence 777644
No 57
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=2.1e-29 Score=209.20 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=144.1
Q ss_pred CCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHH
Q 038955 143 EDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKA 222 (380)
Q Consensus 143 ~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 222 (380)
..+.++|+.|+..|..++++++++. .+..++..+..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~------------------------------------~~~~~~~~~~~g~t~L~~A 46 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN------------------------------------TENDLNQGDDHGFSPLHWA 46 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC------------------------------------TTSCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc------------------------------------CcccccccCCCCCCHHHHH
Confidence 3456778888888888888888775 2334667888999999999
Q ss_pred HHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 038955 223 LDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLL 298 (380)
Q Consensus 223 ~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll 298 (380)
+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+
T Consensus 47 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 47 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999 44 578999999999999999999999998 999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 299 SKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 299 ~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
++|++++.+|..|.|||++|+..++.++++.|++.|++++..
T Consensus 126 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 126 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167 (179)
T ss_dssp HTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCB
T ss_pred HCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 999999999999999999999999999999999999988653
No 58
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=2e-29 Score=206.36 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=138.0
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
+..+.++|+.|+..|..++++.+++. .+..++..+..|.||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~------------------------------------~~~~~~~~~~~g~t~L~~ 48 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV------------------------------------QSVNCRDIEGRQSTPLHF 48 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT------------------------------------TTTTCCCTTTTCCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc------------------------------------CCCCccccccCCCCHHHH
Confidence 45677888888888888888887664 122344567789999999
Q ss_pred HHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus 49 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 127 (165)
T 3twr_A 49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLL 127 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999 4 4678999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCC
Q 038955 298 LSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQ 335 (380)
Q Consensus 298 l~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~ 335 (380)
+++|++++.+|..|.||||+|.. ++.+++++|++.|+
T Consensus 128 l~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 128 LQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999999999999999877 89999999999886
No 59
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.7e-28 Score=207.42 Aligned_cols=163 Identities=19% Similarity=0.161 Sum_probs=145.1
Q ss_pred CCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHH
Q 038955 143 EDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKA 222 (380)
Q Consensus 143 ~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 222 (380)
..+.|+|+.|+..|..+.++.++.. .+..++..+..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~------------------------------------~~~~~~~~~~~g~t~L~~A 46 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQD------------------------------------TTYQVDEVDTEGNTPLNIA 46 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTC------------------------------------TTCCTTCCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHc------------------------------------CCCCCCCCCCCCCCHHHHH
Confidence 4566788888888888777777664 2234667888999999999
Q ss_pred HHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 038955 223 LDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLL 298 (380)
Q Consensus 223 ~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll 298 (380)
+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++|++.++++++..+..|.||||+|+..|+.+++++|+
T Consensus 47 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (201)
T 3hra_A 47 VHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126 (201)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999 44 5789999999999999999999998777999999999999999999999999999999
Q ss_pred hCC-CCCCCCCCCCCCHHHHHHhhCC-----cccHHHHHHcCCCCCCcc
Q 038955 299 SKG-ACTSETTSDGKTAVAICRRMTR-----RKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 299 ~~g-ad~~~~d~~g~tpl~~A~~~~~-----~~~v~~l~~~g~~~~~~~ 341 (380)
++| ++++.+|..|.||||+|+..++ .+++++|++.|++++...
T Consensus 127 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~ 175 (201)
T 3hra_A 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175 (201)
T ss_dssp HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC
T ss_pred HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccC
Confidence 999 9999999999999999999987 899999999999886543
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.6e-28 Score=197.17 Aligned_cols=147 Identities=22% Similarity=0.132 Sum_probs=134.1
Q ss_pred CchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHH
Q 038955 145 VIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALD 224 (380)
Q Consensus 145 ~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 224 (380)
..++|+.|+..|..++++++++... + ++ .+..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--~-----------------------------------~~-~~~~g~t~L~~A~~ 43 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA--P-----------------------------------FT-TDWLGTSPLHLAAQ 43 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC--C-----------------------------------CC-CCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC--C-----------------------------------CC-cCCCCCCHHHHHHH
Confidence 3578999999999999999998722 1 11 35679999999999
Q ss_pred cCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 038955 225 SDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSK 300 (380)
Q Consensus 225 ~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ 300 (380)
.|+.+++++|+++| + .+..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 44 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 122 (153)
T 1awc_B 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122 (153)
T ss_dssp HTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999 4 4578999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHhhCCcccHHHH
Q 038955 301 GACTSETTSDGKTAVAICRRMTRRKDYIEA 330 (380)
Q Consensus 301 gad~~~~d~~g~tpl~~A~~~~~~~~v~~l 330 (380)
|++++.+|..|.||||+|+..|+.+++++|
T Consensus 123 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999999999999876
No 61
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=1.8e-29 Score=221.96 Aligned_cols=126 Identities=23% Similarity=0.170 Sum_probs=117.2
Q ss_pred CCcccchHHHHHHHc---CCHHHHHHHHHCC-CC--------------CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 038955 211 MHAKIVSRIHKALDS---DDIELLKLLLDVS-NV--------------TLDDAYALHYAAAYCSPKVFKEVLNMGLADLN 272 (380)
Q Consensus 211 ~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g-~~--------------~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn 272 (380)
.|..|.||||+|+.. |+.+++++|++.| ++ |..|.||||+|+..|+.+++++|++.| ++++
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~ 117 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVH 117 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTT
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence 688999999999999 9999999999998 33 257999999999999999999999998 9999
Q ss_pred CCCCC-------------CCcHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHh--hCCcc-------cH
Q 038955 273 LKDAR-------------GRTVLHVAAKRKEPAVLVTLLS---KGACTSETTSDGKTAVAICRR--MTRRK-------DY 327 (380)
Q Consensus 273 ~~d~~-------------g~tpLh~A~~~~~~~~v~~Ll~---~gad~~~~d~~g~tpl~~A~~--~~~~~-------~v 327 (380)
.++.. |+||||+|+..|+.+++++|++ +|+|++.+|..|+||||+|+. .++.+ ++
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv 197 (256)
T 2etb_A 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY 197 (256)
T ss_dssp CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHH
Confidence 99886 9999999999999999999999 999999999999999999999 66666 99
Q ss_pred HHHHHcCCCC
Q 038955 328 IEATKQGQGT 337 (380)
Q Consensus 328 ~~l~~~g~~~ 337 (380)
++|++.|+++
T Consensus 198 ~~Ll~~ga~~ 207 (256)
T 2etb_A 198 DGLLQMGARL 207 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHcCCCc
Confidence 9999998876
No 62
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=7.8e-29 Score=196.18 Aligned_cols=129 Identities=17% Similarity=0.125 Sum_probs=123.1
Q ss_pred cCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC-CCc
Q 038955 206 AEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDAR-GRT 280 (380)
Q Consensus 206 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~-g~t 280 (380)
+.++.++..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+. ++.+++++|++.+ ++++.+|.. |+|
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t 80 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTR 80 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBC
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCC
Confidence 567888999999999999999999999999999 4 45789999999999 9999999999998 999999999 999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 281 VLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 281 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999874
No 63
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=5.2e-28 Score=196.01 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=136.5
Q ss_pred CchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHH
Q 038955 145 VIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALD 224 (380)
Q Consensus 145 ~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 224 (380)
+.++|+.|+..|..++++++++. .+ ..++..+..|.||||+ +.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~-----------------------------------~~~~~~~~~g~t~L~~-~~ 44 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-EL-----------------------------------VHPDALNRFGKTALQV-MM 44 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TC-----------------------------------CCTTCCCTTSCCHHHH-SC
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hC-----------------------------------cCccccCCCCCcHHHH-HH
Confidence 45789999999999999988886 21 2355677789999999 99
Q ss_pred cCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 038955 225 SDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSK 300 (380)
Q Consensus 225 ~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ 300 (380)
.|+.+++++|+++| + .|..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 45 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 99999999999999 4 4578999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHc
Q 038955 301 GACTSETTSDGKTAVAICRRMTRRKDYIEATKQ 333 (380)
Q Consensus 301 gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~ 333 (380)
++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 124 -~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 124 -SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp -SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred -cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999999999864
No 64
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=4.2e-28 Score=199.90 Aligned_cols=164 Identities=15% Similarity=0.022 Sum_probs=142.8
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccC-cccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHH
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLY-EAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSRE 189 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~ 189 (380)
.++|+.|+..|..++++.+++.+.+ ++.+ +..+.||||+|+..+..+++++|++. +.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~----------------- 61 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKP--DERGFTPLIWASAFGEIETVRFLLEW--GAD----------------- 61 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCC--CTTSCCHHHHHHHTTCHHHHHHHHHH--TCC-----------------
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCC-----------------
Confidence 3679999999999999999999877 5555 77899999999999999999999987 322
Q ss_pred hhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHH
Q 038955 190 IKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLN 265 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~ 265 (380)
++.++..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|++
T Consensus 62 ------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (172)
T 3v30_A 62 ------------------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123 (172)
T ss_dssp ------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4456678999999999999999999999999 44 5789999999999999999999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Q 038955 266 MGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTA 314 (380)
Q Consensus 266 ~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 314 (380)
.| ++++.+|..|+||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus 124 ~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 124 RG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp TT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred cC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 98 9999999999999999999999999999999999999999999987
No 65
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=5.2e-29 Score=226.90 Aligned_cols=208 Identities=14% Similarity=0.025 Sum_probs=157.7
Q ss_pred CcHHHHHHHHHhccCcccCCC---------------CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCc-cccCCCchH
Q 038955 121 QMTDLVSILQDLFLYEAEDAP---------------VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDN-VCLEKELPD 184 (380)
Q Consensus 121 ~~~~lv~~ll~~~~~~~~~~~---------------~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~-~~~~g~t~l 184 (380)
|..+++++|+++|++++.... .....+.+|+|+..+..++++.+++. +.+++. .+..|.|||
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--g~dvn~~~d~~g~TpL 135 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT--QLNLNIPVDEHGNTPL 135 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS--CCCSCSCCSTTCCCHH
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc--CCCcccccCCCCCcHH
Confidence 899999999999988654110 01112334777777778888888887 779999 899999999
Q ss_pred HHHHHhhhhhh-hhcccccccccCCCcCCcccchHHHHHHHcCC---HHHHHHHHHCC-----CCCCCCchHHHHHHH--
Q 038955 185 EVSREIKSLRV-KSNQESEANIAEVDPMHAKIVSRIHKALDSDD---IELLKLLLDVS-----NVTLDDAYALHYAAA-- 253 (380)
Q Consensus 185 ~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~g-----~~~~~g~t~Lh~A~~-- 253 (380)
|+|+..++..+ ..++ ..+++++.+|..|.||||+|+..|+ .++++.|++.+ ..|..|+||||+|+.
T Consensus 136 h~Aa~~g~~~~v~~Ll---~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~ 212 (327)
T 1sw6_A 136 HWLTSIANLELVKHLV---KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 212 (327)
T ss_dssp HHHHHTTCHHHHHHHH---HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH---HcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHc
Confidence 99999988876 3333 2578899999999999999999998 56777777765 357899999999999
Q ss_pred --cCCHHHHHHHHHhC-------------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 038955 254 --YCSPKVFKEVLNMG-------------------LADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGK 312 (380)
Q Consensus 254 --~~~~~~v~~Ll~~~-------------------~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 312 (380)
.|+.+++++|++.+ |++++.++..|+||||+|+. +++|+++ ++|.+|..|+
T Consensus 213 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~ 284 (327)
T 1sw6_A 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGD 284 (327)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSC
T ss_pred cccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCC
Confidence 89999999999873 49999999999999999985 8999998 6889999999
Q ss_pred CHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 313 TAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 313 tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
||||+|++.|+.+++++|++.|++++...
T Consensus 285 TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 285 TCLNIAARLGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp CHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 99999999999999999999999987643
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.2e-27 Score=195.11 Aligned_cols=154 Identities=16% Similarity=0.077 Sum_probs=138.5
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHH
Q 038955 109 YVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSR 188 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~ 188 (380)
...++|+.|+..|..+++++|++.|.+++.+ +..+.||||+|+. +..+++++|++. +.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~----------------- 61 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLR--GA----------------- 61 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHT--TC-----------------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHc--CC-----------------
Confidence 4478999999999999999999999999887 7889999999999 999999999986 32
Q ss_pred HhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHH
Q 038955 189 EIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVL 264 (380)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll 264 (380)
+++.++..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|+
T Consensus 62 ------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 123 (162)
T 1ihb_A 62 ------------------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123 (162)
T ss_dssp ------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 24456778999999999999999999999999 44 678999999999999999999999
Q ss_pred HhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 038955 265 NMGLAD-LNLKDARGRTVLHVAAKRKEPAVLVTLLSKGAC 303 (380)
Q Consensus 265 ~~~~ad-vn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad 303 (380)
+.+ ++ ++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus 124 ~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 124 KHT-ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred Hcc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999 76 699999999999999999999999999999996
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.2e-26 Score=190.77 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=140.0
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
....++|+.|+..|..+++++|++.|.+++.+ +..+.||||+|+..+..+++++|++. +.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~---------------- 71 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKN--GA---------------- 71 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TC----------------
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CC----------------
Confidence 45578999999999999999999999999887 78899999999999999999999986 32
Q ss_pred HHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHH
Q 038955 188 REIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEV 263 (380)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~L 263 (380)
.++..+..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|
T Consensus 72 -------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 132 (169)
T 2y1l_E 72 -------------------DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132 (169)
T ss_dssp -------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 24456778999999999999999999999999 44 57899999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 038955 264 LNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKG 301 (380)
Q Consensus 264 l~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g 301 (380)
++++ ++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 133 l~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 133 LKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9998 999999999999999999999999999999987
No 68
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=9e-27 Score=195.51 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=140.8
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+||+|+..|..+++++|++.+.+++.+ +..+.||||+|+..+..+++++|++. +.+
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~--------------- 93 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSK--GSN--------------- 93 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH--TCC---------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHC--CCC---------------
Confidence 35679999999999999999999999998877 78899999999999999999999987 322
Q ss_pred HHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHH
Q 038955 188 REIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEV 263 (380)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~L 263 (380)
++.++..|.||||+|+..|+.+++++|+++| + .|..|.||||+|+..|+.+++++|
T Consensus 94 --------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (192)
T 2rfm_A 94 --------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153 (192)
T ss_dssp --------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred --------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4456778999999999999999999999999 4 467899999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 038955 264 LNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKG 301 (380)
Q Consensus 264 l~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g 301 (380)
++.| ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 154 l~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 154 LELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 9997 999999999999999999999999999999864
No 69
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=7.3e-27 Score=184.79 Aligned_cols=123 Identities=24% Similarity=0.183 Sum_probs=115.5
Q ss_pred CCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 038955 211 MHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAA 286 (380)
Q Consensus 211 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~ 286 (380)
....+.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence 4557899999999999999999999999 44 578999999999999999999999998 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcC
Q 038955 287 KRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQG 334 (380)
Q Consensus 287 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g 334 (380)
..|+.+++++|+++|++++.+|..|.||||+|++.++.+++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999987
No 70
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=7.3e-28 Score=212.04 Aligned_cols=164 Identities=19% Similarity=0.109 Sum_probs=134.7
Q ss_pred CCCchHHHHHHhhChHHHHHHHHHHhh--ccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHH
Q 038955 143 EDVIPILVAAFHCQLNKLRFFCIQRIA--RSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIH 220 (380)
Q Consensus 143 ~~~~t~L~~A~~~~~~~lv~~l~~~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 220 (380)
..+.++||.|+..|..+.++.+++... +.+++..+ ...+..|.||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~-------------------------------~~~~~~g~t~L~ 51 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE-------------------------------FREPSTGKTCLP 51 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG-------------------------------GSCTTTCCCHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh-------------------------------hhccCCCCcHHH
Confidence 456788888888888775444444211 21221110 023467999999
Q ss_pred HHH---HcCCHHHHHHHHHCC-C--------------CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-------
Q 038955 221 KAL---DSDDIELLKLLLDVS-N--------------VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKD------- 275 (380)
Q Consensus 221 ~A~---~~~~~~~~~~Ll~~g-~--------------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d------- 275 (380)
+|+ ..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|++.| ++++..+
T Consensus 52 ~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~ 130 (260)
T 3jxi_A 52 KALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADVHAQARGRFFQP 130 (260)
T ss_dssp HHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCEECCCSS
T ss_pred HHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCcCccccccccCc
Confidence 999 679999999999986 2 1238999999999999999999999998 9999998
Q ss_pred -------CCCCcHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHhhCC---------cccHHHHHHcCCC
Q 038955 276 -------ARGRTVLHVAAKRKEPAVLVTLLS---KGACTSETTSDGKTAVAICRRMTR---------RKDYIEATKQGQG 336 (380)
Q Consensus 276 -------~~g~tpLh~A~~~~~~~~v~~Ll~---~gad~~~~d~~g~tpl~~A~~~~~---------~~~v~~l~~~g~~ 336 (380)
..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..++ .++++.|++.|++
T Consensus 131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 210 (260)
T 3jxi_A 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210 (260)
T ss_dssp SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence 689999999999999999999999 999999999999999999999887 5899999999876
Q ss_pred CC
Q 038955 337 TN 338 (380)
Q Consensus 337 ~~ 338 (380)
++
T Consensus 211 ~~ 212 (260)
T 3jxi_A 211 LF 212 (260)
T ss_dssp HC
T ss_pred cc
Confidence 63
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.2e-26 Score=192.44 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=145.0
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHh-ccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 109 YVIELMYASAAFQMTDLVSILQDL-FLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
...++|+.|+..|..+++++|++. +.+++.. +..+.||||+|+..+..+++++|++. +.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~---------------- 63 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG--DDHGFSPLHWACREGRSAVVEMLIMR--GA---------------- 63 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TC----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccccccc--CCCCCCHHHHHHHcCcHHHHHHHHHc--CC----------------
Confidence 346789999999999999999988 5666666 78899999999999999999999986 32
Q ss_pred HHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHH
Q 038955 188 REIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEV 263 (380)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~L 263 (380)
+++.++..|.||||+|+..|+.+++++|+++| + .|..|.||||+|+..|+.+++++|
T Consensus 64 -------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 124 (179)
T 3f6q_A 64 -------------------RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124 (179)
T ss_dssp -------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 24456778999999999999999999999999 4 457899999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 038955 264 LNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDG 311 (380)
Q Consensus 264 l~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g 311 (380)
++.| ++++.+|..|.||||+|+..++.+++++|+++|++++..+..+
T Consensus 125 l~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 125 VANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 9998 9999999999999999999999999999999999999877654
No 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.5e-26 Score=189.53 Aligned_cols=155 Identities=17% Similarity=0.051 Sum_probs=141.3
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHh
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREI 190 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~ 190 (380)
.|+||.|+..|..+++++|++.+.+++.+ +..+.||||+|+..+..+++++|++. +.+
T Consensus 4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~------------------ 61 (167)
T 3v31_A 4 SLSVHQLAAQGEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQN--GAD------------------ 61 (167)
T ss_dssp CCCHHHHHHTTCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCC------------------
T ss_pred cchHHHHHHCCCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHc--CCC------------------
Confidence 57899999999999999999999998877 78999999999999999999999987 322
Q ss_pred hhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHh
Q 038955 191 KSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNM 266 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 266 (380)
++..+..|.||||+|+..|+.+++++|+++| + .|..|.||||+|+..|+.+++++|++.
T Consensus 62 -----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 124 (167)
T 3v31_A 62 -----------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124 (167)
T ss_dssp -----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -----------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3456678899999999999999999999999 4 457899999999999999999999998
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 038955 267 GLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTS 305 (380)
Q Consensus 267 ~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~ 305 (380)
| ++++.+|..|+||||+|+..|+.+++++|+++++++.
T Consensus 125 g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 125 G-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp T-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred C-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999887653
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3e-27 Score=205.58 Aligned_cols=157 Identities=18% Similarity=0.100 Sum_probs=116.9
Q ss_pred CCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHH
Q 038955 144 DVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKAL 223 (380)
Q Consensus 144 ~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 223 (380)
.|.||||.|+..+..+.++.+++.++ .++. +..|.||||+|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~-------------------------------------~~~~-~~~~~t~L~~A~ 45 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGM-------------------------------------RVKF-NPLPLALLLDSS 45 (239)
T ss_dssp -----------------------------------------------------------------------CHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCC-------------------------------------Cccc-CchhhHHHHHHH
Confidence 46677777777777777777766622 2222 246899999999
Q ss_pred HcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 038955 224 DSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLS 299 (380)
Q Consensus 224 ~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~ 299 (380)
..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|++
T Consensus 46 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 124 (239)
T 1ycs_B 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124 (239)
T ss_dssp HHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999 44 578999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-CHHHHH--HhhCCcccHHHHHHcCCCCCC
Q 038955 300 KGACTSETTSDGK-TAVAIC--RRMTRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 300 ~gad~~~~d~~g~-tpl~~A--~~~~~~~~v~~l~~~g~~~~~ 339 (380)
+|+|++.+|..|. ||||+| +..|+.+++++|++.|+++..
T Consensus 125 ~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence 9999999998877 999999 788999999999999877654
No 74
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=2.6e-26 Score=178.70 Aligned_cols=122 Identities=30% Similarity=0.364 Sum_probs=117.0
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 038955 214 KIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRK 289 (380)
Q Consensus 214 ~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~ 289 (380)
+|.||||+|+..|+.+++++|+++| + .+..|.||||+|+..++.+++++|++.+ ++++.+|..|+||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcC
Confidence 4899999999999999999999998 4 4578999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 290 EPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 290 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++.|++
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999974
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=8.6e-26 Score=182.35 Aligned_cols=146 Identities=16% Similarity=0.082 Sum_probs=133.4
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHh
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREI 190 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~ 190 (380)
.++|+.|+..|..+++++|++.|.+++. +..+.||||+|+..+..+++++|++. +
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-------------------- 57 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA--G-------------------- 57 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTT--T--------------------
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHc--C--------------------
Confidence 5789999999999999999999998764 77899999999999999999999876 2
Q ss_pred hhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHh
Q 038955 191 KSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNM 266 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 266 (380)
..++.++..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|++.
T Consensus 58 ---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 122 (153)
T 1awc_B 58 ---------------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122 (153)
T ss_dssp ---------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ---------------CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 224456778999999999999999999999999 44 57899999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 267 GLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 267 ~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
| ++++.+|..|+||||+|+..|+.+++++|
T Consensus 123 g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 123 G-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred C-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 8 99999999999999999999999999987
No 76
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=4e-27 Score=190.89 Aligned_cols=131 Identities=20% Similarity=0.162 Sum_probs=114.3
Q ss_pred CcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc-HHH
Q 038955 209 DPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRT-VLH 283 (380)
Q Consensus 209 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~t-pLh 283 (380)
+..+..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+ .|+.+++++|++.+ ++++.+|..|+| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHHH
Confidence 356778999999999999999999999999 43 578999999985 89999999999988 999999999999 999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 284 VAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 284 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++...
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~ 141 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN 141 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999999886643
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.1e-27 Score=208.39 Aligned_cols=185 Identities=11% Similarity=-0.023 Sum_probs=132.2
Q ss_pred hhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHH
Q 038955 109 YVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSR 188 (380)
Q Consensus 109 ~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~ 188 (380)
.+.|+|+.|+..+..+.++.|+++|++++. ...+.|+||.|+..|..++++.|++. +
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~--g------------------ 60 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYE--V------------------ 60 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTST--T------------------
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHc--C------------------
Confidence 468999999999999999999999999886 57789999999999999999999875 2
Q ss_pred HhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHH
Q 038955 189 EIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVL 264 (380)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll 264 (380)
++++.+|..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++|+
T Consensus 61 -----------------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll 123 (239)
T 1ycs_B 61 -----------------DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123 (239)
T ss_dssp -----------------SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345667888999999999999999999999999 4 4578999999999999999999999
Q ss_pred HhCCCCCCCCCCCCC-cHHHHH--HHcCCHHHHHHHHhCCCCCCCC---------CCCCCCHHHHHHhhCCcccHHHHHH
Q 038955 265 NMGLADLNLKDARGR-TVLHVA--AKRKEPAVLVTLLSKGACTSET---------TSDGKTAVAICRRMTRRKDYIEATK 332 (380)
Q Consensus 265 ~~~~advn~~d~~g~-tpLh~A--~~~~~~~~v~~Ll~~gad~~~~---------d~~g~tpl~~A~~~~~~~~v~~l~~ 332 (380)
++| ++++.++..|. ||||+| +..|+.+++++|+++|++++.. +..+.+|+++|.+.|. +++++.+
T Consensus 124 ~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~ 200 (239)
T 1ycs_B 124 ESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR 200 (239)
T ss_dssp HTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC
T ss_pred HcC-CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe
Confidence 998 99999998877 999999 7889999999999999999876 6678999988887654 5555555
Q ss_pred cCCC
Q 038955 333 QGQG 336 (380)
Q Consensus 333 ~g~~ 336 (380)
.+..
T Consensus 201 ~~~~ 204 (239)
T 1ycs_B 201 EDED 204 (239)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 4443
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=5.7e-26 Score=185.76 Aligned_cols=130 Identities=22% Similarity=0.229 Sum_probs=121.0
Q ss_pred CCcccchHHHHHHHcCCHHHHHHHHHCC-----CCCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 038955 211 MHAKIVSRIHKALDSDDIELLKLLLDVS-----NVTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVA 285 (380)
Q Consensus 211 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A 285 (380)
.+..|.||||.|+..|+.+++++|++.+ ..+..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHH
Confidence 3567899999999999999999999966 34577899999999999999999999998 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 286 AKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 286 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++...
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 138 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999886643
No 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.5e-29 Score=217.08 Aligned_cols=199 Identities=9% Similarity=-0.091 Sum_probs=150.9
Q ss_pred HHHHHhccCcccCC-CCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhh-hhccccccc
Q 038955 127 SILQDLFLYEAEDA-PVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRV-KSNQESEAN 204 (380)
Q Consensus 127 ~~ll~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-~~~~~~~~~ 204 (380)
+.|++.+.+++... ...++.|+||.|+..|..+++++|++. +.+++..+..|.||||+|+..+...+ ..+. ..
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll---~~ 76 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLI---TA 76 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH---HT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH---HC
Confidence 34555665554321 134566777777777777777777776 55777777777777777776666654 2222 24
Q ss_pred ccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---C-CCCchHHHHH--HHcCCHHHHHHHHHhCCCCCCCCCCC
Q 038955 205 IAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---T-LDDAYALHYA--AAYCSPKVFKEVLNMGLADLNLKDAR 277 (380)
Q Consensus 205 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~advn~~d~~ 277 (380)
+++++.+|..|.||||+|+..|+.+++++|+++| ++ + ..|+||||+| +..|+.+++++|++.| ++++.+|..
T Consensus 77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~ 155 (229)
T 2vge_A 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSG 155 (229)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGG
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCC
Confidence 5678888899999999999999999999999999 44 2 5899999999 9999999999999998 999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHhhCCcccHHHHHHcC
Q 038955 278 GRTVLHVAAKRKEPAVLVTLLSKGAC--TSETTSDGKTAVAICRRMTRRKDYIEATKQG 334 (380)
Q Consensus 278 g~tpLh~A~~~~~~~~v~~Ll~~gad--~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g 334 (380)
|.||++.++..+ ..++|++.|++ ++.+|..|+||||+|++.|+.++|+...-..
T Consensus 156 ~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~ 211 (229)
T 2vge_A 156 AVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211 (229)
T ss_dssp EEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEES
T ss_pred chHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhh
Confidence 999999665543 33688899999 7788999999999999999999997655444
No 80
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=7.4e-27 Score=184.96 Aligned_cols=126 Identities=21% Similarity=0.139 Sum_probs=113.7
Q ss_pred cCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 038955 210 PMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVA 285 (380)
Q Consensus 210 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A 285 (380)
.+|..|.||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHHH
Confidence 56789999999999999999999999999 4 4578999999999999999999999998 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 286 AKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 286 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++..+.+.+.+
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 999999999999999999999999999999999998888888777766544
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=4.7e-27 Score=195.83 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=110.6
Q ss_pred cccchHHHHHHHcCCH----HHHHHHHHCC-CC---CCCCchHHHHHHHcCC------HHHHHHHHHhCCCCCCCCCCCC
Q 038955 213 AKIVSRIHKALDSDDI----ELLKLLLDVS-NV---TLDDAYALHYAAAYCS------PKVFKEVLNMGLADLNLKDARG 278 (380)
Q Consensus 213 ~~g~t~L~~A~~~~~~----~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~------~~~v~~Ll~~~~advn~~d~~g 278 (380)
..|.||||+|+..|+. +++++|+++| ++ |..|+||||+|+..++ .+++++|+++| +|+|.+|..|
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g 114 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPY 114 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGG
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCc
Confidence 6799999999999975 5999999999 54 5789999999999987 57899999998 9999999999
Q ss_pred C-cHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCC
Q 038955 279 R-TVLHVAAKRK-----EPAVLVTLLS-KGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQ 335 (380)
Q Consensus 279 ~-tpLh~A~~~~-----~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~ 335 (380)
+ ||||+|+..+ +.+++++|++ +|+|++.+|..|+||||+|++.++.+++++|.+...
T Consensus 115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 9 9999999954 4569999999 999999999999999999999999999999987653
No 82
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=5.8e-26 Score=201.70 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=133.3
Q ss_pred CchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC--C---CCCCCchHHHHHH---
Q 038955 181 ELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS--N---VTLDDAYALHYAA--- 252 (380)
Q Consensus 181 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~---~~~~g~t~Lh~A~--- 252 (380)
.+++|.|...+.+..............+|.+|..|.||||+|+..|+.+++++|++.| + .|..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 3455666544444331111000112237788999999999999999999999999998 3 3578999999999
Q ss_pred --HcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHH
Q 038955 253 --AYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEA 330 (380)
Q Consensus 253 --~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l 330 (380)
..++.+++++|+..+ ++++..+..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.+++++|
T Consensus 157 ~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 668899999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-cCCCCCCc
Q 038955 331 TK-QGQGTNKD 340 (380)
Q Consensus 331 ~~-~g~~~~~~ 340 (380)
++ .|++++..
T Consensus 236 l~~~gad~~~~ 246 (276)
T 4hbd_A 236 LAVPSCDISLT 246 (276)
T ss_dssp HTSTTCCTTCC
T ss_pred HhcCCCCCcCc
Confidence 99 89887653
No 83
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1e-24 Score=176.52 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=132.8
Q ss_pred hhHHHHHHHcCcHHHHHHHHHh-ccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHH
Q 038955 111 IELMYASAAFQMTDLVSILQDL-FLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSRE 189 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~ 189 (380)
.++|+.|+..|..+++++|++. +.+++.. +..+.||||+ +..+..+++++|++. +
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~-~~~~~~~~v~~Ll~~--g------------------- 58 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQV-MMFGSTAIALELLKQ--G------------------- 58 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCC--CTTSCCHHHH-SCTTCHHHHHHHHHT--T-------------------
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCcccc--CCCCCcHHHH-HHcCCHHHHHHHHHC--C-------------------
Confidence 5789999999999999999988 3366665 7889999999 889999999999886 3
Q ss_pred hhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHH
Q 038955 190 IKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLN 265 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 265 (380)
++++.+|..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++|++
T Consensus 59 ----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 59 ----------------ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122 (156)
T ss_dssp ----------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ----------------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh
Confidence 224556778999999999999999999999999 4 45789999999999999999999998
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 038955 266 MGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSK 300 (380)
Q Consensus 266 ~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ 300 (380)
. ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 123 ~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 123 E--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp T--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred c--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 7 89999999999999999999999999999975
No 84
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=196.56 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=120.7
Q ss_pred cccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 038955 202 EANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDAR 277 (380)
Q Consensus 202 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~ 277 (380)
++.+...+..+..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|++.| +++|.+|..
T Consensus 8 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~d~~ 86 (229)
T 2vge_A 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG-ANVNSPDSH 86 (229)
T ss_dssp --CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTT
T ss_pred CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCC
Confidence 3344445566778889999999999999999999998 43 578999999999999999999999987 999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHH--HhhCCcccHHHHHHcCCCCCCc
Q 038955 278 GRTVLHVAAKRKEPAVLVTLLSKGACTSETT-SDGKTAVAIC--RRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 278 g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl~~A--~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+| +..++.+++++|++.|++++..
T Consensus 87 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 9999999999999999999999999999986 6999999999 8999999999999998876553
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=9.7e-26 Score=182.68 Aligned_cols=138 Identities=17% Similarity=0.047 Sum_probs=106.4
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
++.+.|+||+|+..|..+++++|++. + ..++.++..|.||||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g-----------------------------------~~~~~~~~~g~t~L~~ 51 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA--G-----------------------------------ANPNAPNSYGRRPIQV 51 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT--T-----------------------------------CCTTCCCSSSCCTTTS
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc--C-----------------------------------CCCCCCCCCCCCHHHH
Confidence 56777888888888888888888775 3 3355667788899999
Q ss_pred HHHcCCHHHHHHHHHCC-CC---CCCCch-HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-NV---TLDDAY-ALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVT 296 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~~---~~~g~t-~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~ 296 (380)
|+ .|+.+++++|+++| ++ |..|+| |||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++
T Consensus 52 A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~ 129 (156)
T 1bi7_B 52 MM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARY 129 (156)
T ss_dssp SC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence 85 89999999999999 44 567898 999999999999999999998 9999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCHHHHH
Q 038955 297 LLSKGACTSETTSDGKTAVAIC 318 (380)
Q Consensus 297 Ll~~gad~~~~d~~g~tpl~~A 318 (380)
|+++|++++.+|..|.||.+-+
T Consensus 130 Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 130 LRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HSSCC-----------------
T ss_pred HHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999998744
No 86
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=2.8e-25 Score=172.46 Aligned_cols=108 Identities=26% Similarity=0.239 Sum_probs=100.4
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 038955 212 HAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAK 287 (380)
Q Consensus 212 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~ 287 (380)
+..|.||||+|+..|+.+++++|++.| + .|..|+||||+|+..++.+++++|++.+ ++++.+|..|+||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHH
Confidence 457899999999999999999999999 4 4578999999999999999999999988 9999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHh
Q 038955 288 RKEPAVLVTLLSKGACTSETTSDGKTAVAICRR 320 (380)
Q Consensus 288 ~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~ 320 (380)
.++.+++++|+++|++++.+|..|.||||+|..
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 999999999999999999999999999999954
No 87
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=7.4e-25 Score=173.18 Aligned_cols=123 Identities=15% Similarity=0.019 Sum_probs=107.5
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
+..+.||||+|+..+..+++++|++. +..++.++..|.||||+
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------------------------g~~~~~~~~~g~t~L~~ 51 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEA-------------------------------------GADPNALNRFGRRPIQV 51 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHT-------------------------------------TCCTTCCCTTCCTTTTT
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHc-------------------------------------CCCcCCcCCCCCCHHHH
Confidence 56667777777777777777777665 23456677889999999
Q ss_pred HHHcCCHHHHHHHHHCC-CC---CCC-CchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-NV---TLD-DAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVT 296 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~~---~~~-g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~ 296 (380)
|+. |+.+++++|+++| ++ |.. |+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++
T Consensus 52 A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 52 MMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp STT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred HHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999 9999999999999 44 466 999999999999999999999998 9999999999999999999999999999
Q ss_pred HHhCCCC
Q 038955 297 LLSKGAC 303 (380)
Q Consensus 297 Ll~~gad 303 (380)
|+++|||
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 9999987
No 88
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=3.2e-25 Score=190.48 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=112.6
Q ss_pred cCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 038955 210 PMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVA 285 (380)
Q Consensus 210 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A 285 (380)
..+..|.||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|++.+|++++.+|..|+||||+|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 34567899999999999999999999999 4 4578999999999999999999999994599999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCcc
Q 038955 286 AKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 286 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.++..|+......
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence 99999999999999999999999999999999999999999999999998765433
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=4.1e-25 Score=183.95 Aligned_cols=122 Identities=26% Similarity=0.321 Sum_probs=111.3
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHH
Q 038955 212 HAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKD-ARGRTVLHVAA 286 (380)
Q Consensus 212 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d-~~g~tpLh~A~ 286 (380)
+..|.||||+|+..|+.+++++|++ | + .|..|+||||+|+..|+.+++++|++.+ +++|.++ ..|+||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHH
Confidence 5689999999999999999999999 7 3 4678999999999999999999999998 9999998 89999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCC
Q 038955 287 KRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQ 335 (380)
Q Consensus 287 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~ 335 (380)
..|+.+++++|+++|++++.+|..|+||||+|++.++......++..++
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~ 167 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHH
Confidence 9999999999999999999999999999999999877766655555554
No 90
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=3.1e-23 Score=184.02 Aligned_cols=125 Identities=21% Similarity=0.217 Sum_probs=117.1
Q ss_pred cccchHHHHHHHcCCHHHHHHHHHCC-CC---------CCCCchHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCC
Q 038955 213 AKIVSRIHKALDSDDIELLKLLLDVS-NV---------TLDDAYALHYAAAY---CSPKVFKEVLNMGLADLNLKDARGR 279 (380)
Q Consensus 213 ~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---------~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~advn~~d~~g~ 279 (380)
....++|+.|+..|+.+.+..+++.| ++ +..|+||||+|+.. |+.+++++|++.| +++|.+|..|+
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~ 206 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCC
T ss_pred chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCC
Confidence 34568999999999999999999999 43 46799999999999 8999999999998 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCC
Q 038955 280 TVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTN 338 (380)
Q Consensus 280 tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~ 338 (380)
||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+.+++++|++.|+...
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999997643
No 91
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1e-25 Score=207.69 Aligned_cols=175 Identities=13% Similarity=-0.010 Sum_probs=139.2
Q ss_pred hhHHHHHHH-cCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHH
Q 038955 111 IELMYASAA-FQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSRE 189 (380)
Q Consensus 111 ~~~L~~A~~-~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~ 189 (380)
...+++|.. ++.+++++++.+.|.+ +.||||+|+..|..+++++|++..+.
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~------------------- 117 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAITGCSSALDTLCLLLTS------------------- 117 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHHHCCHHHHHHHTTC--C-------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHHcCCHHHHHHHHHcCCc-------------------
Confidence 345666665 6888899999888765 34899999999999999999886321
Q ss_pred hhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C-----CCCCCchHHHHHHHcCCHHHHHHH
Q 038955 190 IKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N-----VTLDDAYALHYAAAYCSPKVFKEV 263 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~-----~~~~g~t~Lh~A~~~~~~~~v~~L 263 (380)
....+..+..|.||||+|+..|+.+++++|+++| + ++..++||||+|+..|+.+++++|
T Consensus 118 ---------------~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~L 182 (376)
T 2aja_A 118 ---------------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182 (376)
T ss_dssp ---------------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 0112234456788999999999999999999998 4 233348999999999999999999
Q ss_pred HHhCCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 264 LNMGLADLNL--KDARGRTVLHVAA-KRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 264 l~~~~advn~--~d~~g~tpLh~A~-~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
+++| ++++. .|..|+||||+|+ ..|+.++|++|+++|++ |.|||++|+..|+.+++++|++.|++
T Consensus 183 l~~g-a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~ 250 (376)
T 2aja_A 183 CELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNR 250 (376)
T ss_dssp HHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred HHcC-CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence 9987 88887 7888999999999 99999999999988753 78999999999999999999888754
No 92
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.90 E-value=1.5e-23 Score=154.08 Aligned_cols=93 Identities=31% Similarity=0.367 Sum_probs=85.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhC
Q 038955 243 DDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMT 322 (380)
Q Consensus 243 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 322 (380)
+|+||||+|+..|+.+++++|++.+ +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 4789999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHcCCC
Q 038955 323 RRKDYIEATKQGQG 336 (380)
Q Consensus 323 ~~~~v~~l~~~g~~ 336 (380)
+.+++++|++.|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999874
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=5.4e-23 Score=159.76 Aligned_cols=122 Identities=29% Similarity=0.330 Sum_probs=109.8
Q ss_pred CCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHH
Q 038955 144 DVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKAL 223 (380)
Q Consensus 144 ~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 223 (380)
+|.||||.|+..+..++++++++. +. .++..+..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~-----------------------------------~~~~~~~~g~t~L~~A~ 43 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GA-----------------------------------DVNAKDKNGRTPLHLAA 43 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TC-----------------------------------CTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CC-----------------------------------CCCCcCCCCCcHHHHHH
Confidence 467889999999998888888886 32 24456778999999999
Q ss_pred HcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 038955 224 DSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLS 299 (380)
Q Consensus 224 ~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~ 299 (380)
..|+.+++++|+++| + .|..|.||||+|+..++.+++++|++.+ ++++.+|..|.||||+|+..++.+++++|++
T Consensus 44 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 122 (126)
T 1n0r_A 44 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122 (126)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999 4 4578999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCC
Q 038955 300 KGAC 303 (380)
Q Consensus 300 ~gad 303 (380)
+|||
T Consensus 123 ~Gad 126 (126)
T 1n0r_A 123 AGAY 126 (126)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 9997
No 94
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=2.5e-24 Score=179.28 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=120.9
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChH----HHHHHHHHHhhccCCCccccCCCchHHH
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLN----KLRFFCIQRIARSNLDNVCLEKELPDEV 186 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~----~lv~~l~~~~~~~~~~~~~~~g~t~l~~ 186 (380)
.+.|+.|++.|..+.+..++..+.+... +..|.||||+|+..+.. +++++|++. +++
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gad-------------- 67 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINK--GAD-------------- 67 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCC--------------
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCC--------------
Confidence 3557888888888888877777655332 25678888888887753 477777776 434
Q ss_pred HHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHHcCC------HHHHHHHHHCC-CC---CCCCc-hHHHHHHHcC
Q 038955 187 SREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDD------IELLKLLLDVS-NV---TLDDA-YALHYAAAYC 255 (380)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~------~~~~~~Ll~~g-~~---~~~g~-t~Lh~A~~~~ 255 (380)
+|.+|..|.||||+|+..|+ .+++++|+++| ++ |..|+ ||||+|+..+
T Consensus 68 ---------------------vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~ 126 (186)
T 3t8k_A 68 ---------------------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126 (186)
T ss_dssp ---------------------SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCC
T ss_pred ---------------------CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcC
Confidence 55555666666666666664 58899999999 55 46788 9999999954
Q ss_pred C-----HHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 038955 256 S-----PKVFKEVLN-MGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETT 308 (380)
Q Consensus 256 ~-----~~~v~~Ll~-~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d 308 (380)
. .+++++|++ .| +|++.+|..|+||||+|+..|+.+++++|.+...+.+.++
T Consensus 127 ~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 127 VDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp SCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 3 568999999 66 9999999999999999999999999999998766666555
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=8.4e-24 Score=184.28 Aligned_cols=120 Identities=28% Similarity=0.300 Sum_probs=106.7
Q ss_pred CcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHH
Q 038955 212 HAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKD-ARGRTVLHVAA 286 (380)
Q Consensus 212 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d-~~g~tpLh~A~ 286 (380)
+..|.||||+|+..|+.+++++|++ | + .|..|+||||+|+..|+.+++++|++.| +++|.++ ..|+||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHH
Confidence 4578999999999999999999999 7 4 4578999999999999999999999998 9999998 78999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHh----------------hCCcccHHHHHHc
Q 038955 287 KRKEPAVLVTLLSKGACTSETTSDGKTAVAICRR----------------MTRRKDYIEATKQ 333 (380)
Q Consensus 287 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~----------------~~~~~~v~~l~~~ 333 (380)
..|+.+++++|+++|++++.+|..|.||||+|+. .|+.+++++|.+.
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999999999999999999999985 3555666666654
No 96
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=9.4e-23 Score=161.04 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=109.3
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
...+.|+||+|+..|..+++++|++. + .+++.+|..|.||||+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g-----------------------------------~~~~~~~~~g~t~L~~ 53 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN--G-----------------------------------ADVNAKDEYGLTPLYL 53 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT--T-----------------------------------CCTTCCCTTSCCHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc--C-----------------------------------CCCCCcCCCCCCHHHH
Confidence 45678999999999999999999886 3 2245677789999999
Q ss_pred HHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
|+..|+.+++++|+++| + .|..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus 54 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999999999999999 4 4578999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCC
Q 038955 298 LSKG 301 (380)
Q Consensus 298 l~~g 301 (380)
+++|
T Consensus 133 l~~G 136 (136)
T 2jab_A 133 QKLN 136 (136)
T ss_dssp HHC-
T ss_pred HHcC
Confidence 9987
No 97
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.89 E-value=1.1e-25 Score=207.33 Aligned_cols=207 Identities=12% Similarity=-0.022 Sum_probs=157.6
Q ss_pred hhhHHHHHHHcCcHHHHHHHHHhccCcccC-CCCCCCchHHHHHHhhChHHHHHHHHHHhhccC---CCccccCCCchHH
Q 038955 110 VIELMYASAAFQMTDLVSILQDLFLYEAED-APVEDVIPILVAAFHCQLNKLRFFCIQRIARSN---LDNVCLEKELPDE 185 (380)
Q Consensus 110 ~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~-~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~---~~~~~~~g~t~l~ 185 (380)
..|+||.|+..|..+++++|++.|...... ..+..+.||||+|+..|..+++++|++. +++ .+..+.+ .||||
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~TpLh 168 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YHAFR 168 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CCHHH
Confidence 359999999999999999999998732110 1134677899999999999999999998 433 1222333 99999
Q ss_pred HHHHhhhhhh-hhcccccccccCCCc--CCcccchHHHHHH-HcCCHHHHHHHHHCCCCCCCCchHHHHHHHcCCHHHHH
Q 038955 186 VSREIKSLRV-KSNQESEANIAEVDP--MHAKIVSRIHKAL-DSDDIELLKLLLDVSNVTLDDAYALHYAAAYCSPKVFK 261 (380)
Q Consensus 186 ~a~~~~~~~~-~~~~~~~~~~~~~~~--~~~~g~t~L~~A~-~~~~~~~~~~Ll~~g~~~~~g~t~Lh~A~~~~~~~~v~ 261 (380)
+|+..++..+ ..+.. .+++++. .|..|.||||+|+ ..|+.+++++|+++| ..|.||||+|+.+|+.++++
T Consensus 169 ~Aa~~G~~eiv~~Ll~---~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g---a~~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 169 LAAENGHLHVLNRLCE---LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP---VMLAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHHHTTCHHHHHHHHH---SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH---HHHHHHHHCTTTTTTTTHHH
T ss_pred HHHHCCCHHHHHHHHH---cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC---CccchHHHHHHHCCCHHHHH
Confidence 9999998876 33332 4555555 7778999999999 999999999999987 23899999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHcC---------------------------CHHHHHHHHh---------CCCCCC
Q 038955 262 EVLNMGLADLNLKDARGRTVLHVAAKRK---------------------------EPAVLVTLLS---------KGACTS 305 (380)
Q Consensus 262 ~Ll~~~~advn~~d~~g~tpLh~A~~~~---------------------------~~~~v~~Ll~---------~gad~~ 305 (380)
+|++.+ ++++..+. ++++|+..| ..+.+++|++ .|++++
T Consensus 243 lL~~~g-a~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n 317 (376)
T 2aja_A 243 FIARHV-NRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 317 (376)
T ss_dssp HHHHHH-HHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTT
T ss_pred HHHhcC-cccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCC
Confidence 999988 77765432 333333333 3456666665 344444
Q ss_pred CCCCCCCCHHHHHHhhCCcccHHHHHHcC
Q 038955 306 ETTSDGKTAVAICRRMTRRKDYIEATKQG 334 (380)
Q Consensus 306 ~~d~~g~tpl~~A~~~~~~~~v~~l~~~g 334 (380)
.+.||||+|++.|+.+++++|++.|
T Consensus 318 ----~~~~~L~~A~~~g~~e~v~lLl~~~ 342 (376)
T 2aja_A 318 ----DANELLRLALRLGNQGACALLLSIP 342 (376)
T ss_dssp ----CCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred ----CccHHHHHHHHcCcHHHHHHHHcCh
Confidence 5679999999999999999999876
No 98
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=9.6e-23 Score=195.82 Aligned_cols=125 Identities=23% Similarity=0.248 Sum_probs=114.3
Q ss_pred cchHHHHHHHcCCHHHHHHHHHCC-CC---------CCCCchHHHHHHH---cCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 038955 215 IVSRIHKALDSDDIELLKLLLDVS-NV---------TLDDAYALHYAAA---YCSPKVFKEVLNMGLADLNLKDARGRTV 281 (380)
Q Consensus 215 g~t~L~~A~~~~~~~~~~~Ll~~g-~~---------~~~g~t~Lh~A~~---~~~~~~v~~Ll~~~~advn~~d~~g~tp 281 (380)
..+.||.|+..|+.++++.|++.| ++ +..|+||||+|+. .|+.+++++|++.| +|+|.+|..|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcH
Confidence 347899999999999999999999 54 5679999999966 89999999999998 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCCCCCc
Q 038955 282 LHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 282 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~~~~~ 340 (380)
||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+.+++++|++.|++++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999887664
No 99
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=1.7e-22 Score=185.47 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=115.9
Q ss_pred CCcccchHHHHHHHc-CCHHHHHHHHHCC-CCC-----CCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 038955 211 MHAKIVSRIHKALDS-DDIELLKLLLDVS-NVT-----LDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLH 283 (380)
Q Consensus 211 ~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g-~~~-----~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh 283 (380)
....+.|+||+|+.. |+.+++++|+++| ++| ..|.||||+|+..|+.+++++|++.| +++|.+|..|+||||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh 273 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLH 273 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence 344577999999999 9999999999999 543 67899999999999999999999998 999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 284 VAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 284 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
+|+..|+.+++++|+++|||++.+|..|.||||+|+..++.+++++|+..|..
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999988743
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=179.69 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=114.3
Q ss_pred cccchHHHHHHHcCCHHHHHHHHHCC-CC---------CCCCchHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCC
Q 038955 213 AKIVSRIHKALDSDDIELLKLLLDVS-NV---------TLDDAYALHYAAAY---CSPKVFKEVLNMGLADLNLKDARGR 279 (380)
Q Consensus 213 ~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---------~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~advn~~d~~g~ 279 (380)
..+.++|+.|+..|+.+.++.|++.| ++ +..|.||||+|+.. ++.+++++|++.| +++|.+|..|+
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~ 227 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGN 227 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCC
Confidence 34568899999999999999999999 43 56889999999997 8999999999998 99999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHcCCC
Q 038955 280 TVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQGQG 336 (380)
Q Consensus 280 tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~g~~ 336 (380)
||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..++.+++++|++.|++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999998753
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=180.59 Aligned_cols=136 Identities=19% Similarity=0.143 Sum_probs=107.7
Q ss_pred CCchHHHHHHhhhhhhhhcccccccccCCCc------CCcccchHHHHHHHc---CCHHHHHHHHHCC-CC---CCCCch
Q 038955 180 KELPDEVSREIKSLRVKSNQESEANIAEVDP------MHAKIVSRIHKALDS---DDIELLKLLLDVS-NV---TLDDAY 246 (380)
Q Consensus 180 g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g-~~---~~~g~t 246 (380)
..++|+.|...+.+.....+ ...+.+++. .+..|.||||+|+.. |+.+++++|+++| ++ |..|+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~l--l~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEA--FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHH--HHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHH--HhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34557777666665432111 124455555 588999999999997 8999999999999 44 578999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhhCCc
Q 038955 247 ALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICRRMTRR 324 (380)
Q Consensus 247 ~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~ 324 (380)
|||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++.+++++|+++|++ .|.||||+|++.|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999988 99999999999999999999999999999999987 589999999998764
No 102
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=5.8e-22 Score=145.55 Aligned_cols=89 Identities=36% Similarity=0.462 Sum_probs=83.6
Q ss_pred ccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 038955 214 KIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRK 289 (380)
Q Consensus 214 ~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~ 289 (380)
+|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence 4899999999999999999999999 4 4578999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 038955 290 EPAVLVTLLSKGAC 303 (380)
Q Consensus 290 ~~~~v~~Ll~~gad 303 (380)
+.+++++|+++||+
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999986
No 103
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=1.3e-22 Score=155.22 Aligned_cols=105 Identities=25% Similarity=0.243 Sum_probs=93.8
Q ss_pred cCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 038955 210 PMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVA 285 (380)
Q Consensus 210 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A 285 (380)
.+|..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..++.+++++|++.+ ++++.+|..|+||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHH
Confidence 46788999999999999999999999998 4 4578899999999999999999999987 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCCHH
Q 038955 286 AKRKEPAVLVTLLSKGACTSETTSDGKTAV 315 (380)
Q Consensus 286 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 315 (380)
+..++.+++++|+++|||+|.++..|.||-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 999999999999999999999999999873
No 104
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=3.5e-21 Score=152.11 Aligned_cols=101 Identities=21% Similarity=0.144 Sum_probs=96.4
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 038955 240 VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319 (380)
Q Consensus 240 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~ 319 (380)
.|..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 4688999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcccHHHHHHcCCCCCCcc
Q 038955 320 RMTRRKDYIEATKQGQGTNKDR 341 (380)
Q Consensus 320 ~~~~~~~v~~l~~~g~~~~~~~ 341 (380)
..++.+++++|++.|++++...
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~ 106 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRNAVN 106 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCC
T ss_pred HcCCHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999876543
No 105
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=7.1e-22 Score=164.27 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=113.9
Q ss_pred CCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHH
Q 038955 143 EDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKA 222 (380)
Q Consensus 143 ~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 222 (380)
..+.||||+|+..|..++++.+++ +..++.+|..|.||||+|
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~--------------------------------------~~~~~~~d~~g~t~L~~A 83 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE--------------------------------------DRDVDAVDENGRTALLFV 83 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT--------------------------------------TSCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh--------------------------------------cCCCCCcCCCCCCHHHHH
Confidence 355677777777777666666655 234566788999999999
Q ss_pred HHcCCHHHHHHHHHCC-CC---C-CCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 223 LDSDDIELLKLLLDVS-NV---T-LDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 223 ~~~~~~~~~~~Ll~~g-~~---~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
+..|+.+++++|+++| ++ + ..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~------ 156 (183)
T 3deo_A 84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKT------ 156 (183)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHT------
T ss_pred HHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccC------
Confidence 9999999999999999 54 3 67999999999999999999999998 99999999999999999875322
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhhCCcccHHHHHHc
Q 038955 298 LSKGACTSETTSDGKTAVAICRRMTRRKDYIEATKQ 333 (380)
Q Consensus 298 l~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~l~~~ 333 (380)
..+.+||++|++.|+.+++++|.++
T Consensus 157 -----------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -----------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 4578999999999999999998764
No 106
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=7.3e-22 Score=169.42 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=104.4
Q ss_pred CCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHH
Q 038955 142 VEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHK 221 (380)
Q Consensus 142 ~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 221 (380)
+..+.|+||+|+..|..++++.|++. + ..++.+|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g-----------------------------------~~~~~~~~~g~t~L~~ 112 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN--R-----------------------------------VGVNGLDKAGSTALYW 112 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT--T-----------------------------------CCTTCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhC--C-----------------------------------CCccccCCCCCCHHHH
Confidence 45677899999999999999988875 2 2355677889999999
Q ss_pred HHHcCCHHHHHHHHHC-C-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 038955 222 ALDSDDIELLKLLLDV-S-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVT 296 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~-g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~ 296 (380)
|+..|+.+++++|++. | + .|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++.++++.
T Consensus 113 A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~ 191 (222)
T 3ehr_A 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKK 191 (222)
T ss_dssp HHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHH
Confidence 9999999999999998 6 4 4678999999999999999999999998 9999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCC
Q 038955 297 LLSKGACTSETTSDGK 312 (380)
Q Consensus 297 Ll~~gad~~~~d~~g~ 312 (380)
|++.|++.+..+.+|.
T Consensus 192 l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 192 KQGTDAVRTLSNAEDY 207 (222)
T ss_dssp ----------------
T ss_pred Hhccchhhhccchhhh
Confidence 9999999887775543
No 107
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=6.2e-21 Score=147.72 Aligned_cols=100 Identities=19% Similarity=0.098 Sum_probs=92.9
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 038955 240 VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319 (380)
Q Consensus 240 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~ 319 (380)
.+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 3467899999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcccHHHHHHcCCCCCCc
Q 038955 320 RMTRRKDYIEATKQGQGTNKD 340 (380)
Q Consensus 320 ~~~~~~~v~~l~~~g~~~~~~ 340 (380)
..++.+++++|++.|++++..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~ 102 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVK 102 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCC
T ss_pred HcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999999987654
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=1.8e-21 Score=148.83 Aligned_cols=99 Identities=28% Similarity=0.365 Sum_probs=95.4
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 038955 240 VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAICR 319 (380)
Q Consensus 240 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~ 319 (380)
.|..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 5789999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcccHHHHHHcCCCCCC
Q 038955 320 RMTRRKDYIEATKQGQGTNK 339 (380)
Q Consensus 320 ~~~~~~~v~~l~~~g~~~~~ 339 (380)
..++.+++++|++.|++++.
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNA 103 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHH
T ss_pred HCCCHHHHHHHHHcCCCCCc
Confidence 99999999999999998755
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=4.6e-20 Score=177.15 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=109.8
Q ss_pred CchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCCcccchHHHHHHH
Q 038955 145 VIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMHAKIVSRIHKALD 224 (380)
Q Consensus 145 ~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 224 (380)
..+.|+.|+..|..+.++.+++. +++++.... ....+..|.||||+|+.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~-----------------------------~~~~~~~g~t~Lh~A~~ 180 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLP-----------------------------GPDAQAPEELVLHLAVK 180 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBC-----------------------------CSSSCCSCBCHHHHHHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCC-----------------------------CcccccccchHHHHHHH
Confidence 34679999999999999999988 444433210 11246789999999977
Q ss_pred ---cCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 225 ---SDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 225 ---~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
.|+.+++++|+++| ++ |..|+||||+|+..|+.+++++||+.| ||+|.+|..|+||||+|+..|+.+++++|
T Consensus 181 ~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~L 259 (497)
T 3lvq_E 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELL 259 (497)
T ss_dssp TCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred hcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 89999999999999 54 578999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCCCCCCCCCC
Q 038955 298 LSKGACTSETTSD 310 (380)
Q Consensus 298 l~~gad~~~~d~~ 310 (380)
+++||+++..+..
T Consensus 260 l~~ga~~~~~~~h 272 (497)
T 3lvq_E 260 EQAQAGTFAFPLH 272 (497)
T ss_dssp HHTCC--------
T ss_pred HHhCCCCCCCcce
Confidence 9999999874333
No 110
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.83 E-value=2.5e-20 Score=141.30 Aligned_cols=91 Identities=27% Similarity=0.209 Sum_probs=81.5
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 038955 239 NVTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGACTSETTSDGKTAVAIC 318 (380)
Q Consensus 239 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 318 (380)
.++.+|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 45678899999999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcccHHHH
Q 038955 319 RRMTRRKDYIEA 330 (380)
Q Consensus 319 ~~~~~~~~v~~l 330 (380)
+..++.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999888775
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=4e-20 Score=169.71 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=102.7
Q ss_pred CchHHHHHHhh-ChHHHHHHHHHHhhccCCCccccCCCchHHHHHHhhhhhhhhcccccccccCCCcCC--cccchHHHH
Q 038955 145 VIPILVAAFHC-QLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREIKSLRVKSNQESEANIAEVDPMH--AKIVSRIHK 221 (380)
Q Consensus 145 ~~t~L~~A~~~-~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~t~L~~ 221 (380)
..++||.|+.. +..++++.|++. + +++|..+ ..|.||||+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~--G-----------------------------------advn~~~~~~~g~TpLh~ 241 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAH--G-----------------------------------ADVNWVNGGQDNATPLIQ 241 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHT--T-----------------------------------CCTTCCCTTTTCCCHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHc--C-----------------------------------CCCCccccccCCCCHHHH
Confidence 44677777777 777777777665 3 3344455 689999999
Q ss_pred HHHcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 038955 222 ALDSDDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTL 297 (380)
Q Consensus 222 A~~~~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~L 297 (380)
|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++.+++++|
T Consensus 242 Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lL 320 (368)
T 3jue_A 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLL 320 (368)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999999999999999 54 578999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCC---CCCCCCCCCCCCHHHHHHhhC
Q 038955 298 LSKG---ACTSETTSDGKTAVAICRRMT 322 (380)
Q Consensus 298 l~~g---ad~~~~d~~g~tpl~~A~~~~ 322 (380)
++.| ++....+..+.|+++++....
T Consensus 321 l~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 321 RLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHC-----------------------
T ss_pred HHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 9865 445556678889998877643
No 112
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=1.9e-19 Score=159.56 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=89.4
Q ss_pred CCcCCcccchHHHHHHHc---CCHHHHHHHHHCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 038955 208 VDPMHAKIVSRIHKALDS---DDIELLKLLLDVS-NV---TLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRT 280 (380)
Q Consensus 208 ~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g-~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~t 280 (380)
++..+..|.||||+|+.. |+.+++++|+++| ++ |..|+||||+|+..|+.+++++|++.| +|++.+|..|+|
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~t 240 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGET 240 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCC
Confidence 445678899999999999 8999999999999 54 578999999999999999999999988 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCC
Q 038955 281 VLHVAAKRKEPAVLVTLLSKGACT 304 (380)
Q Consensus 281 pLh~A~~~~~~~~v~~Ll~~gad~ 304 (380)
|||+|+..|+.+++++|+++|++.
T Consensus 241 pL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 241 PLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999864
No 113
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.80 E-value=1.5e-19 Score=157.34 Aligned_cols=138 Identities=12% Similarity=-0.016 Sum_probs=117.1
Q ss_pred hhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHH
Q 038955 108 NYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVS 187 (380)
Q Consensus 108 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a 187 (380)
..+.|+||.|+..|..+++++|++ +.+++.+ +..|.||||+|+..|..+++++|++. +++
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~--------------- 102 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEA--GAD--------------- 102 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHT--TCC---------------
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCHHHHHHHHHc--CCC---------------
Confidence 466899999999999999999999 8888877 78899999999999999999999887 323
Q ss_pred HHhhhhhhhhcccccccccCCCcCC-cccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHH
Q 038955 188 REIKSLRVKSNQESEANIAEVDPMH-AKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKE 262 (380)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~ 262 (380)
++.++ ..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..++
T Consensus 103 --------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------ 156 (244)
T 3ui2_A 103 --------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK------ 156 (244)
T ss_dssp --------------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------
T ss_pred --------------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------
Confidence 44454 67999999999999999999999999 4 46789999999986321
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 038955 263 VLNMGLADLNLKDARGRTVLHVAAKRKEPAVLVTLLSKGAC 303 (380)
Q Consensus 263 Ll~~~~advn~~d~~g~tpLh~A~~~~~~~~v~~Ll~~gad 303 (380)
...+.||||+|+..|+.+++++|++++.+
T Consensus 157 ------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 ------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 24578999999999999999999987654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=3.4e-18 Score=129.45 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=80.3
Q ss_pred cCCCcCCcccchHHHHHHHcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 038955 206 AEVDPMHAKIVSRIHKALDSDDIELLKLLLDVS-N---VTLDDAYALHYAAAYCSPKVFKEVLNMGLADLNLKDARGRTV 281 (380)
Q Consensus 206 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~advn~~d~~g~tp 281 (380)
......+..|.||||+|+..|+.+++++|+++| + .|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tp 93 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTA 93 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcH
Confidence 335567889999999999999999999999999 4 4578999999999999999999999997 9999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 038955 282 LHVAAKRKEPAVLVTL 297 (380)
Q Consensus 282 Lh~A~~~~~~~~v~~L 297 (380)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 115
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=140.00 Aligned_cols=133 Identities=23% Similarity=0.369 Sum_probs=114.0
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCcccc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKA 85 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~ 85 (380)
.++.+|||+|.++|+.|+|||.||+++|+||+.||.+++.++ ....|.+++ +++++|..+|+|+|+|++..
T Consensus 30 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~f~~~l~~~Yt~~~~~ 100 (172)
T 3htm_A 30 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND------VEPEVFKEMMCFIYTGKAPN 100 (172)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGG---GTTEEEECS------SCHHHHHHHHHHHHHSCCTT
T ss_pred hCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCcccc---CCCeEEecC------CCHHHHHHHHHHHhCCCCCC
Confidence 357899999999999999999999999999999999988763 346888887 78889999999999998864
Q ss_pred CCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHH
Q 038955 86 SPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCI 165 (380)
Q Consensus 86 ~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~ 165 (380)
.+ +....+|.+|.+++...+.+.+.+....... ..+....+.+|..++..++.+.+.
T Consensus 101 ~~--------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~~~~A~~~~~~~L~~~~~ 157 (172)
T 3htm_A 101 LD--------------------KMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILADLHSADQLKTQAV 157 (172)
T ss_dssp GG--------------------GTHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred cH--------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33 4567899999999999999988877654333 578889999999999999999999
Q ss_pred HHhhc
Q 038955 166 QRIAR 170 (380)
Q Consensus 166 ~~~~~ 170 (380)
+++..
T Consensus 158 ~~i~~ 162 (172)
T 3htm_A 158 DFINY 162 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 116
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=126.29 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=83.7
Q ss_pred CCCCCCCccceEEEEcC----eeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHH
Q 038955 3 STNPKETWLDAEIVVEG----KSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYL 78 (380)
Q Consensus 3 ~~~~~~~~~D~~~~~~~----~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~l 78 (380)
+.+.++.+|||++.+++ +.|+|||.||+++|+||++||.+++.++ ...|.+++ +++++|..+|+|+
T Consensus 1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----~~~i~l~~------~~~~~f~~~l~~i 70 (109)
T 2vkp_A 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----KSEIHIPD------VEPAAFLILLKYM 70 (109)
T ss_dssp CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------CCEEEETT------SCHHHHHHHHHHH
T ss_pred CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----CCeEEeCC------CCHHHHHHHHHHH
Confidence 35678999999999998 8999999999999999999999998873 37888887 7888999999999
Q ss_pred hcCccccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 79 YTGKTKASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 79 y~g~~~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
|+|++...+ +....++.+|.+++...+.+.+.+..
T Consensus 71 Yt~~~~~~~--------------------~~~~~ll~~A~~~~~~~L~~~c~~~l 105 (109)
T 2vkp_A 71 YSDEIDLEA--------------------DTVLATLYAAKKYIVPALAKACVNFL 105 (109)
T ss_dssp HHCCCCCCT--------------------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCccCCH--------------------HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999987655 34588999999999999998887653
No 117
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.71 E-value=3e-17 Score=143.54 Aligned_cols=138 Identities=20% Similarity=0.351 Sum_probs=107.7
Q ss_pred CCCCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCc
Q 038955 3 STNPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGK 82 (380)
Q Consensus 3 ~~~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~ 82 (380)
..+.++.+|||+|.++|+.|+|||+||+++|+||++||.+++.+. ......|.+++ +++++|..+++|+|+|+
T Consensus 24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~-e~~~~~i~l~~------v~~~~f~~ll~~~Yt~~ 96 (256)
T 3hve_A 24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEG------ISVMVMREILDYIFSGQ 96 (256)
T ss_dssp TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC------------CEEECSS------CCHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcc-cCCCCeEEeCC------CCHHHHHHHHhhccCCC
Confidence 456788999999999999999999999999999999999887630 11345788877 88899999999999999
Q ss_pred cccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHH
Q 038955 83 TKASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRF 162 (380)
Q Consensus 83 ~~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~ 162 (380)
+.... +.+..++.+|.+++..++.+.+.+....... ..++...+.+|..++..++.+
T Consensus 97 ~~i~~--------------------~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~---~~n~~~i~~~A~~~~~~~L~~ 153 (256)
T 3hve_A 97 IRLNE--------------------DTIQDVVQAADLLLLTDLKTLCCEFLEGCIA---AENCIGIRDFALHYCLHHVHY 153 (256)
T ss_dssp CCCC---------------------CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHTTCHHHHH
T ss_pred CcccH--------------------hHHHHHHHHHHHHChHHHHHHHHHHHHhhCC---HhhHHHHHHHHHHcCcHHHHH
Confidence 97654 3458899999999999999998877654433 568889999999999998888
Q ss_pred HHHHHhhc
Q 038955 163 FCIQRIAR 170 (380)
Q Consensus 163 ~l~~~~~~ 170 (380)
.+.+++..
T Consensus 154 ~~~~~i~~ 161 (256)
T 3hve_A 154 LATEYLET 161 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
No 118
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.71 E-value=2.6e-17 Score=126.48 Aligned_cols=99 Identities=24% Similarity=0.364 Sum_probs=82.9
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+.++.+|||+|.++|+.|+|||+||+++|+||++||.+++.++ ..+.+.+++ +++++|..+++|+|+|++.
T Consensus 20 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~f~~ll~~~Yt~~~~ 90 (120)
T 2if5_A 20 RTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD---QQNVYEIDF------VSAEALTALMDFAYTATLT 90 (120)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCS------SCHHHHHHHHHHHHHSCCC
T ss_pred HhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcccc---CCceEEeCC------CCHHHHHHHHHHHcCCCCc
Confidence 3468899999999999999999999999999999999988763 346788877 8888999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHh
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDL 132 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 132 (380)
... +....++.+|.+++...+.+.+.+.
T Consensus 91 ~~~--------------------~~~~~ll~~A~~~~i~~L~~~C~~~ 118 (120)
T 2if5_A 91 VST--------------------ANVGDILSAARLLEIPAVSHVCADL 118 (120)
T ss_dssp CCG--------------------GGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 543 4668899999999999999988654
No 119
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=130.19 Aligned_cols=102 Identities=20% Similarity=0.397 Sum_probs=84.1
Q ss_pred CCCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCcc
Q 038955 4 TNPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKT 83 (380)
Q Consensus 4 ~~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~ 83 (380)
.+.++.+|||+|.++|+.|+|||+||+++|+||++||.+++.+. ......|.+++ +++++|..+|+|+|+|++
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~-e~~~~~I~l~~------v~~~~f~~lL~fiYtg~~ 113 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEG------ISVMVMREILDYIFSGQI 113 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCS------SCHHHHHHHHHHHTTSCC
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccc-cCCCcEEEeCC------CCHHHHHHHHHHHhCCCC
Confidence 46678999999999999999999999999999999999887641 11345788877 888999999999999998
Q ss_pred ccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHh
Q 038955 84 KASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDL 132 (380)
Q Consensus 84 ~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 132 (380)
.... +.+..+|.+|.+++...+.+.+.+.
T Consensus 114 ~i~~--------------------~~v~~ll~~A~~l~i~~L~~~C~~~ 142 (144)
T 2ppi_A 114 RLNE--------------------DTIQDVVQAADLLLLTDLKTLCCEF 142 (144)
T ss_dssp CCCT--------------------TTHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCH--------------------HHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 7654 4568899999999999999988754
No 120
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.70 E-value=3.8e-17 Score=126.87 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=87.3
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceee-cCCcCCCcccHHHHHHHHHHHhcCcc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLL-TDLVPHGKVGYEAFNDILYYLYTGKT 83 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l-~~~~~~~~~~~~~~~~~l~~ly~g~~ 83 (380)
+.++.+|||+|.++|++|+|||+||+++|+||++||.+++.+ ....|.+ ++ +++++|..+|+|+|+|++
T Consensus 24 ~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~------~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 24 RSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPE------INPEGFNILLDFMYTSRL 93 (127)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTT------SCHHHHHHHHHHHHHSCC
T ss_pred HhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCC------CCHHHHHHHHHHHcCCCc
Confidence 356889999999999999999999999999999999998876 5678888 66 888999999999999998
Q ss_pred ccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 84 KASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 84 ~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
.... +....++.+|.+++...+.+.+.+..
T Consensus 94 ~~~~--------------------~~~~~ll~~A~~~~i~~L~~~c~~~l 123 (127)
T 1r29_A 94 NLRE--------------------GNIMAVMATAMYLQMEHVVDTCRKFI 123 (127)
T ss_dssp CCCT--------------------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7654 45588999999999999999887653
No 121
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=126.31 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=84.6
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+.++.+|||++.++|++|+|||+||+++|+||++||.+++ .+.|.+++ +++++|..+|+|+|+|++.
T Consensus 19 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~------~~~~~f~~ll~~iYtg~~~ 85 (119)
T 3b84_A 19 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPA------GFAEIFGLLLDFFYTGHLA 85 (119)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECG------GGHHHHHHHHHHHHHSCCC
T ss_pred HhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCC------CCHHHHHHHHHHHcCCCCc
Confidence 3467899999999999999999999999999999999875 24788887 8889999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhcc
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFL 134 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~ 134 (380)
... +....++.+|.+++..++.+.+.+...
T Consensus 86 ~~~--------------------~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (119)
T 3b84_A 86 LTS--------------------GNRDQVLLAARELRVPEAVELCQSFKP 115 (119)
T ss_dssp CCT--------------------TTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred cCH--------------------HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 654 345789999999999999999887653
No 122
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=132.57 Aligned_cols=123 Identities=24% Similarity=0.395 Sum_probs=85.1
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCcccc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKA 85 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~ 85 (380)
.++.+|||+|.++|+.|+|||.||+++|+||+.||.+++.++ ....+.+++ +++++|..+++|+|+|++..
T Consensus 21 ~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~~~~~l~~~Y~~~~~~ 91 (145)
T 4eoz_A 21 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND------VEPEVFKEMMCFIYTGKAPN 91 (145)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHH---HHTEEEECS------SCHHHHHHHHHHHHHSCCTT
T ss_pred hCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCC---CCceEEecC------CCHHHHHHHHHhhccCccCC
Confidence 357899999999999999999999999999999999887652 235788887 78899999999999998864
Q ss_pred CCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHH
Q 038955 86 SPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKL 160 (380)
Q Consensus 86 ~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~l 160 (380)
.. +....++..|.+++..++...+.+....... .+++...+.+|..++..++
T Consensus 92 ~~--------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~l~~A~~~~~~~L 143 (145)
T 4eoz_A 92 LD--------------------KMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILADLHSADQL 143 (145)
T ss_dssp GG--------------------GTHHHHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred cH--------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHHHh
Confidence 33 4567899999999999999998877655433 4677888888888876654
No 123
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.68 E-value=5.2e-17 Score=127.30 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=83.2
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+.++.+|||+|.++|+.|+|||+||+++|+||++||.+++. ..|.+++ +.+++|..+|+|+|+|++.
T Consensus 20 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~-------~~i~l~~------~~~~~f~~lL~fiYtg~~~ 86 (135)
T 2yy9_A 20 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTG-------GSVVLPA------GFAEIFGLLLDFFYTGHLA 86 (135)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-----------CCEEECG------GGHHHHHHHHHHHHHSCCC
T ss_pred HhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCCC-------CeEEeCC------CCHHHHHHHHHHHhCCCCC
Confidence 45688999999999999999999999999999999998762 3788877 8889999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccC
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLY 135 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 135 (380)
... +.+..+|.+|.+++...+++.+.+....
T Consensus 87 i~~--------------------~~v~~ll~~A~~l~i~~L~~~C~~~l~~ 117 (135)
T 2yy9_A 87 LTS--------------------GNRDQVLLAAKELRVPEAVELCQSFQPQ 117 (135)
T ss_dssp CCT--------------------TTHHHHHHHHHHTTCHHHHHHHHHCCC-
T ss_pred CCH--------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 654 4558899999999999999999887544
No 124
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.68 E-value=1.4e-16 Score=143.62 Aligned_cols=133 Identities=23% Similarity=0.369 Sum_probs=111.1
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCcccc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKA 85 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~ 85 (380)
..+.+|||+|.++|++|+|||+||++||+||++||.+.+.|+ ...+|.+++ +.+++|+.+|+|+|+|.+..
T Consensus 170 ~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~f~~~L~~iYt~~~~~ 240 (312)
T 3hqi_A 170 ENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND------VEPEVFKEMMCFIYTGKAPN 240 (312)
T ss_dssp HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC--------CCSEEEECS------SCHHHHHHHHHHHHHSCCTT
T ss_pred hCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcccc---CCceEEecC------CCHHHHHHHHHhhcCCCCCC
Confidence 357899999999999999999999999999999999988773 456888888 88889999999999998754
Q ss_pred CCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHH
Q 038955 86 SPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCI 165 (380)
Q Consensus 86 ~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~ 165 (380)
.. +....+|.+|.+++...+...+.+....... ..+....|.+|..++..++.+.|+
T Consensus 241 ~~--------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~n~~~~l~~A~~~~~~~L~~~~~ 297 (312)
T 3hqi_A 241 LD--------------------KMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILADLHSADQLKTQAV 297 (312)
T ss_dssp HH--------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---TTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred hH--------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 32 5668899999999999999998887654333 567889999999999999999999
Q ss_pred HHhhc
Q 038955 166 QRIAR 170 (380)
Q Consensus 166 ~~~~~ 170 (380)
+++..
T Consensus 298 ~~i~~ 302 (312)
T 3hqi_A 298 DFINY 302 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 125
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=120.76 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=82.0
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeec--CCcCCCcccHHHHHHHHHHHhcCcc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLT--DLVPHGKVGYEAFNDILYYLYTGKT 83 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~--~~~~~~~~~~~~~~~~l~~ly~g~~ 83 (380)
.++.+|||+|.++|+.|+|||.||+++|+||++||.++. .+.+.++ + +++++|..+++|+|+|++
T Consensus 18 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~------~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 18 EAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS-------ENNVFLDQSQ------VKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC-------CSCEECCTTT------CCHHHHHHHHHHHHHSCC
T ss_pred hcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCC-------CCeEEeecCC------CCHHHHHHHHHHHcCCCc
Confidence 457899999999999999999999999999999998872 3456665 6 889999999999999998
Q ss_pred ccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 84 KASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 84 ~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
...+ +....++.+|.+++...+.+.+.+..
T Consensus 85 ~~~~--------------------~~v~~ll~~A~~~~i~~L~~~C~~~l 114 (116)
T 2vpk_A 85 NLDS--------------------WNVKEIHQAADYLKVEEVVTKCKIKM 114 (116)
T ss_dssp CCCT--------------------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7654 45588999999999999999887653
No 126
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.67 E-value=1.3e-16 Score=125.71 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=86.1
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeec-CCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLT-DLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
.++.+|||+|.++|+.|+|||+||+++|+||++||.+.+.+ ...+.++ + +.+++|..+|+|+|+|++.
T Consensus 32 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~------v~~~~~~~lL~~~Ytg~~~ 100 (138)
T 2z8h_A 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA-----ELTVTLPEE------VTVKGFEPLIQFAYTAKLI 100 (138)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT-----TEEEECCTT------SCHHHHHHHHHHHHHSCCC
T ss_pred hhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC-----CceEEeCCC------CCHHHHHHHHHHhcCCCcc
Confidence 45789999999999999999999999999999999998766 3467774 5 8889999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccC
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLY 135 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 135 (380)
... +.+..+|.+|.+++...+.+.+.+....
T Consensus 101 i~~--------------------~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 131 (138)
T 2z8h_A 101 LSK--------------------DNVDEVCRCVEFLSVHNIEESCFQFLKF 131 (138)
T ss_dssp CCT--------------------TTHHHHHHHHHHHTCGGGHHHHHHHTTC
T ss_pred cCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 654 3558899999999999999999887654
No 127
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.65 E-value=2.5e-16 Score=121.02 Aligned_cols=95 Identities=24% Similarity=0.389 Sum_probs=82.6
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+.++.+|||++.++|+.|+|||+||+++|+||++||.++ ...+.+++ +++++|..+++|+|+|++.
T Consensus 23 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~--------~~~i~l~~------~~~~~f~~ll~~~Ytg~~~ 88 (121)
T 1buo_A 23 RLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN--------SQHYTLDF------LSPKTFQQILEYAYTATLQ 88 (121)
T ss_dssp HHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECS------SCHHHHHHHHHHHHHSCCC
T ss_pred HhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC--------CcEEEeCC------CCHHHHHHHHHhhcCCCcC
Confidence 346789999999999999999999999999999999874 34688877 8889999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
..+ +....++.+|.+++...+.+.+.+..
T Consensus 89 ~~~--------------------~~~~~ll~~A~~~~i~~L~~~c~~~l 117 (121)
T 1buo_A 89 AKA--------------------EDLDDLLYAAEILEIEYLEEQCLKML 117 (121)
T ss_dssp CCG--------------------GGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCH--------------------HHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 543 45688999999999999998887653
No 128
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.65 E-value=1.2e-16 Score=122.35 Aligned_cols=94 Identities=23% Similarity=0.387 Sum_probs=81.5
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+.++.+|||++.++|+.|+|||.||+++|+||++||.+. .+.+.+++ +++++|..+++|+|+|++.
T Consensus 22 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--------~~~i~l~~------~~~~~f~~ll~~~Ytg~~~ 87 (119)
T 2q81_A 22 RQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ--------KDVVHLDI------SNAAGLGQVLEFMYTAKLS 87 (119)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC--------CSGGGGGG------CCHHHHHHHHHHHHHSCCC
T ss_pred HhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCC------CCHHHHHHHHHHHcCCCCc
Confidence 346789999999999999999999999999999999974 23566666 7889999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHh
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDL 132 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 132 (380)
... +....++.+|.+++..++.+.+.+.
T Consensus 88 i~~--------------------~~~~~ll~~A~~l~i~~L~~~C~~~ 115 (119)
T 2q81_A 88 LSP--------------------ENVDDVLAVATFLQMQDIITACHAL 115 (119)
T ss_dssp CCT--------------------TTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 654 3458899999999999999988764
No 129
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.65 E-value=5.4e-17 Score=143.77 Aligned_cols=140 Identities=16% Similarity=0.276 Sum_probs=110.6
Q ss_pred CCCCCccceEEEEc---CeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcC
Q 038955 5 NPKETWLDAEIVVE---GKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTG 81 (380)
Q Consensus 5 ~~~~~~~D~~~~~~---~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g 81 (380)
+.++.+|||+|.++ |+.|+|||+||+++|+||++||.+++.|+ ....|.++++.....+++++|..+++|+|+|
T Consensus 27 ~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~---~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 27 RRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES---RSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-----------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred HhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccc---cCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence 34678999999998 99999999999999999999999998773 3457888854443348999999999999999
Q ss_pred ccccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHH
Q 038955 82 KTKASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLR 161 (380)
Q Consensus 82 ~~~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv 161 (380)
++.... +.+..++.+|.+++...+.+.+.+....... ..++...+.+|..++..++.
T Consensus 104 ~~~i~~--------------------~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~---~~n~~~i~~~A~~~~~~~L~ 160 (279)
T 3i3n_A 104 RIRVST--------------------GSVHEVLELADRFLLIRLKEFCGEFLKKKLH---LSNCVAIHSLAHMYTLSQLA 160 (279)
T ss_dssp EEEEET--------------------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---TTTHHHHHHHHHHTTCHHHH
T ss_pred CcccCH--------------------HHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC---cchHHHHHHHHHHcCcHHHH
Confidence 997655 3558899999999999999988877655333 57888999999999999998
Q ss_pred HHHHHHhhc
Q 038955 162 FFCIQRIAR 170 (380)
Q Consensus 162 ~~l~~~~~~ 170 (380)
+.+.+++..
T Consensus 161 ~~~~~~i~~ 169 (279)
T 3i3n_A 161 LKAADMIRR 169 (279)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 130
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.63 E-value=6.6e-17 Score=124.81 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=79.0
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeec-CCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLT-DLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
.++.+|||+|.++|+.|+|||+||+++|+||++||.+++.+ ...+.++ + +++++|..+|+|+|+|++.
T Consensus 25 ~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~~~i~l~~~------v~~~~f~~lL~~iYtg~~~ 93 (124)
T 2ihc_A 25 KKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG-----ELNITLPEE------VTVKGFEPLIQFAYTAKLI 93 (124)
T ss_dssp HHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC--------CEEEECCTT------SCHHHHHHHHHHHHHSEEE
T ss_pred hcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC-----CceEeecCC------cCHHHHHHHHHHhcCCCcc
Confidence 45789999999999999999999999999999999998766 3466663 5 8889999999999999987
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHH
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQD 131 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~ 131 (380)
... +.+..++.+|.+++...+.+.+.+
T Consensus 94 i~~--------------------~~v~~ll~~A~~~~~~~L~~~C~~ 120 (124)
T 2ihc_A 94 LSK--------------------ENVDEVCKCVEFLSVHNIEESCFQ 120 (124)
T ss_dssp EET--------------------TTHHHHHHHHHHHTBSSCCGGGGG
T ss_pred cCH--------------------HHHHHHHHHHHHHCCHHHHHHHHH
Confidence 654 355889999999999888766544
No 131
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.60 E-value=4.1e-16 Score=121.25 Aligned_cols=96 Identities=26% Similarity=0.434 Sum_probs=79.4
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeec-CCcCCCcccHHHHHHHHHHHhcCcc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLT-DLVPHGKVGYEAFNDILYYLYTGKT 83 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~~~l~~ly~g~~ 83 (380)
+.++.+|||+|.++|+.|+|||+||+++|+||++||.+. ....|.++ + +++++|..+++|+|+|++
T Consensus 28 ~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~------~~~~~f~~ll~~iYtg~~ 94 (129)
T 3ga1_A 28 RLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAA------VQPQSFQQILSFCYTGRL 94 (129)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTT------CCHHHHHHHHHHHHHSEE
T ss_pred HhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCC------CCHHHHHHHHHHHhCCcc
Confidence 346789999999999999999999999999999999987 24578885 6 888999999999999999
Q ss_pred ccCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 84 KASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 84 ~~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
.... +....+|.+|.+++...+.+.+.+..
T Consensus 95 ~i~~--------------------~~~~~ll~~A~~~~i~~l~~~C~~~L 124 (129)
T 3ga1_A 95 SMNV--------------------GDQDLLMYTAGFLQIQEIMEKGTEFF 124 (129)
T ss_dssp ECCT--------------------TTHHHHHHHHHHTTBTTSSCC-----
T ss_pred ccCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7755 34578999999999988877665543
No 132
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.60 E-value=1.3e-15 Score=115.81 Aligned_cols=88 Identities=23% Similarity=0.413 Sum_probs=76.0
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCcc-c
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKT-K 84 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~-~ 84 (380)
.++.+|||++.++|+.|+|||+||+++|+||+++|.++ ...|.+++ +++++|..+++|+|+|++ .
T Consensus 27 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~--------~~~i~l~~------~~~~~f~~~l~~~Ytg~~~~ 92 (116)
T 3fkc_A 27 GHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA--------GQVVELSF------IRAEIFAEILNYIYSSKIVR 92 (116)
T ss_dssp HHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECS------SCHHHHHHHHHHHTTSCCCS
T ss_pred hcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCC------CCHHHHHHHHHhhcCCCcCC
Confidence 45789999999999999999999999999999999886 34788877 888999999999999988 3
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHH
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVS 127 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~ 127 (380)
... +....++.+|.+++...+.+
T Consensus 93 ~~~--------------------~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 93 VRS--------------------DLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp CCH--------------------HHHHHHHHHHHHHTCHHHHT
T ss_pred CCH--------------------HHHHHHHHHHHHhCccccCc
Confidence 332 56688999999999887753
No 133
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.59 E-value=2.8e-16 Score=121.60 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=79.1
Q ss_pred CCCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 5 NPKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 5 ~~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+.++.+|||+|.++|+.|+|||+||+++|+||++||.+.+.+ ...+.+++ .+++++|..+++|+|+|++.
T Consensus 27 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~-----~~~~~~f~~~l~~iYtg~~~ 96 (125)
T 3ohu_A 27 RKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPE-----EVTARGFGPLLQFAYTAKLL 96 (125)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCT-----TCCHHHHHHHHHHHTTSEEE
T ss_pred HhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCC-----CCCHHHHHHHHHhHcCCceE
Confidence 345789999999999999999999999999999999998765 45666654 16788999999999999997
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHH
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSIL 129 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~l 129 (380)
... +....++.+|.+++...+.+.+
T Consensus 97 ~~~--------------------~~v~~ll~~A~~l~i~~L~~~C 121 (125)
T 3ohu_A 97 LSR--------------------ENIREVIRCAEFLRMHNLEDSC 121 (125)
T ss_dssp ECT--------------------TTHHHHHHHHHHHTBSSCTTSS
T ss_pred ECH--------------------HHHHHHHHHHHHhCCHHHHHHH
Confidence 755 3457889999999887766543
No 134
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.59 E-value=6.9e-16 Score=117.72 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCCccceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCcccc
Q 038955 6 PKETWLDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKA 85 (380)
Q Consensus 6 ~~~~~~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~ 85 (380)
.++.+|||++.++|++|+|||+||+++|+||++ ....+.+++ +++++|..+|+|+|||++..
T Consensus 26 ~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~------------~~~~i~l~~------v~~~~f~~ll~fiYtg~~~i 87 (119)
T 3m5b_A 26 LRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR------------RGQWALGEG------ISPSTFAQLLNFVYGESVEL 87 (119)
T ss_dssp HTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC------------CEEEECCSS------CCHHHHHHHHHHHTTCCEEE
T ss_pred hcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc------------CCCEEEeCC------CCHHHHHHHHHHHcCCCcCc
Confidence 457899999999999999999999999999973 124677777 88999999999999999977
Q ss_pred CCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 86 SPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 86 ~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
.. +.+..+|.+|.+++...+.+.|.+..
T Consensus 88 ~~--------------------~~v~~ll~aA~~l~i~~l~~~C~~~~ 115 (119)
T 3m5b_A 88 QP--------------------GELRPLQEAARALGVQSLEEACWRAR 115 (119)
T ss_dssp CG--------------------GGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred CH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 54 45688999999999999999998764
No 135
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.55 E-value=1.6e-07 Score=75.00 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=72.3
Q ss_pred eEEEE-cCeeeeeeeeeeecccHHHHHHHhc-cCC-CCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCC
Q 038955 13 AEIVV-EGKSVAVNRSILSERSQFFRWLFNL-RND-GSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPE 89 (380)
Q Consensus 13 ~~~~~-~~~~~~~h~~iL~~~s~~f~~l~~~-~~~-~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~ 89 (380)
|++.. +|+.|++||.+ +..|+||+.||.. ++. ++ ....|.+++ ++...+..+++|+|+++-...+..
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~---~~~~Ipl~~------V~~~iL~kViey~~~h~~~~~~~~ 72 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEG---DDDPVPLPN------VNAAILKKVIQWCTHHKDDPPPPE 72 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS---------CEECTT------SCHHHHHHHHHHHHHTTTCCC---
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccc---cCCCcCCCC------ccHHHHHHHHHHHHHcCcCCCCcc
Confidence 56654 79999999998 8999999999987 543 31 234677777 888899999999999874432211
Q ss_pred Cccc----ccCC-CCCCC--CchhhhhhhhHHHHHHHcCcHHHHHHHHHhccC
Q 038955 90 VSAC----VDDA-CAHST--CPPAINYVIELMYASAAFQMTDLVSILQDLFLY 135 (380)
Q Consensus 90 ~~~c----~~~~-c~~~~--~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 135 (380)
.... .+.. -|+.. -.+ .+.+..+|.+|.+++...++.++.+..++
T Consensus 73 ~~~~~~~~~~~i~~wD~~F~~id-~~~l~eLl~AAnyL~I~~Lld~~c~~va~ 124 (159)
T 2ast_A 73 DDENKEKRTDDIPVWDQEFLKVD-QGTLFELILAANYLDIKGLLDVTCKTVAN 124 (159)
T ss_dssp --------CCCCCHHHHHHTCSC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHcCC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0000 0000 00000 000 15677899999999999998888777655
No 136
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.34 E-value=1.4e-06 Score=63.07 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=41.0
Q ss_pred cCeeeeeeeeeeecccHHHHHHHhc--cCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHh
Q 038955 18 EGKSVAVNRSILSERSQFFRWLFNL--RNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLY 79 (380)
Q Consensus 18 ~~~~~~~h~~iL~~~s~~f~~l~~~--~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly 79 (380)
||+.|++||.+ |..|++|+.||.. ++.|+ ....|.+++ ++...+..+++|+|
T Consensus 10 Dg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~---~~~~I~l~~------V~~~iL~kViey~~ 63 (97)
T 4ajy_C 10 DGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN---ETNEVNFRE------IPSHVLSKVCMYFT 63 (97)
T ss_dssp TCCEEEEEHHH-HTTSHHHHHHHCCC-----------CEEECTT------SCHHHHHHHHHHHH
T ss_pred CCcEEEecHHH-HHHhHHHHHHHHhCCCcccc---CCCceECCC------CCHHHHHHHHHHHH
Confidence 69999999999 9999999999986 33331 245677777 88889999999998
No 137
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=97.85 E-value=5.5e-05 Score=58.76 Aligned_cols=109 Identities=15% Similarity=0.204 Sum_probs=69.0
Q ss_pred eEEEE-cCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCCCc
Q 038955 13 AEIVV-EGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPEVS 91 (380)
Q Consensus 13 ~~~~~-~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~~~ 91 (380)
|++.. +|+.|.+|+.+ +..|++|+.|+.... ...|.+++ ++...+..+++|+|.++-...+....
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-------~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~~~~ 69 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG-------MDPVPLPN------VNAAILKKVIQWCTHHKDDPPPPEDD 69 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC-------CSSEECTT------CCHHHHHHHHHHHHHHTTCC------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC-------CCceecCC------cCHHHHHHHHHHHHHhccCCCccccc
Confidence 55555 79999999998 889999999998641 12577777 88889999999998765332111100
Q ss_pred cc----ccCC-CCCCC-CchhhhhhhhHHHHHHHcCcHHHHHHHHHhccC
Q 038955 92 AC----VDDA-CAHST-CPPAINYVIELMYASAAFQMTDLVSILQDLFLY 135 (380)
Q Consensus 92 ~c----~~~~-c~~~~-~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 135 (380)
.+ .+.. -|+.. ..-..+.+..++.+|.+++...++.++.+..++
T Consensus 70 ~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~ 119 (141)
T 1fs1_B 70 ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 119 (141)
T ss_dssp -----------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 00 0000 00000 000015667888888888888888887776655
No 138
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=97.34 E-value=7e-05 Score=59.51 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=42.6
Q ss_pred eEEEE-cCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCCC-
Q 038955 13 AEIVV-EGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPEV- 90 (380)
Q Consensus 13 ~~~~~-~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~~- 90 (380)
|++.. +|+.|.+|+.+ +..|++|+.||..... ...|.+++ ++...+..+++|+|.++-...+...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~------~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~~~~ 72 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCV------DNGVPLPN------VTSKILAKVIEYCKRHVEAAASKAEA 72 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------------CCTT------SCHHHHHHHHHC--------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCC------CCceeCCc------CcHHHHHHHHHHHHHcccCCCccccc
Confidence 45553 79999999998 8899999999976532 22566666 8889999999999887643211110
Q ss_pred ccc----ccC-CCCCCCCc-hhhhhhhhHHHHHHHcCcHHHHHHHHHhccC
Q 038955 91 SAC----VDD-ACAHSTCP-PAINYVIELMYASAAFQMTDLVSILQDLFLY 135 (380)
Q Consensus 91 ~~c----~~~-~c~~~~~~-~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 135 (380)
... .+. .-|+.... -..+.+..++.+|.+++...++.++.+..++
T Consensus 73 ~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~ 123 (160)
T 2p1m_A 73 VEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVAD 123 (160)
T ss_dssp ----------------------------CHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 000 000 00000000 0014556777777777777777777666555
No 139
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.06 E-value=0.0021 Score=47.09 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=67.6
Q ss_pred ceEEEEcCeeeeeeeeeeeccc-HHHHHHHhccCCC-CCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCC
Q 038955 12 DAEIVVEGKSVAVNRSILSERS-QFFRWLFNLRNDG-SVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPE 89 (380)
Q Consensus 12 D~~~~~~~~~~~~h~~iL~~~s-~~f~~l~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~ 89 (380)
-|++.|+|+.|...+..|.... .+|..||.+...- .......++-+ | -....|..+|.|+.+|++.....-
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-D------Rdp~~F~~IL~~lr~g~l~~p~~~ 79 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-D------RDPTYFGPVLNYLRHGKLVINKDL 79 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-C------SCHHHHHHHHHHHHHSCCCCCTTS
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-c------CChHHHHHHHHHhCCCeeCCCCCC
Confidence 4679999999999999998764 4678888764211 00011223433 3 577899999999999988653321
Q ss_pred CcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHh
Q 038955 90 VSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDL 132 (380)
Q Consensus 90 ~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 132 (380)
....++.-|.+++..++++.|.+.
T Consensus 80 -------------------~~~~l~~Ea~fy~l~~L~~~l~~~ 103 (107)
T 3drz_A 80 -------------------AEEGVLEEAEFYNITSLIKLVKDK 103 (107)
T ss_dssp -------------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHCCCHHHHHHHHHH
Confidence 124578899999999999988654
No 140
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=96.79 E-value=0.0059 Score=43.92 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=46.9
Q ss_pred eEEEE-cCeeeeeeeeeeecccHHHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCc
Q 038955 13 AEIVV-EGKSVAVNRSILSERSQFFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGK 82 (380)
Q Consensus 13 ~~~~~-~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~ 82 (380)
|++.- +|+.|.+++.+ +..|.+++.|+..++ +. ....|.+++ +....+..+++|++..+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~---~~~~Iplp~------V~~~iL~kVieyc~~h~ 65 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RE---SKGRIELKQ------FDSHILEKAVEYLNYNL 65 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TT---CTTEEEETT------SCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-cc---CCCceecCC------cCHHHHHHHHHHHHHhc
Confidence 45554 79999999996 889999999998754 21 234688887 88889999999997644
No 141
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=96.01 E-value=0.018 Score=41.12 Aligned_cols=88 Identities=10% Similarity=0.198 Sum_probs=56.0
Q ss_pred eEEEE-cCeeeeeeeeeeecccHHHHHHHhcc-C-CCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCC-
Q 038955 13 AEIVV-EGKSVAVNRSILSERSQFFRWLFNLR-N-DGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPP- 88 (380)
Q Consensus 13 ~~~~~-~~~~~~~h~~iL~~~s~~f~~l~~~~-~-~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~- 88 (380)
|++.- +|+.|.+++.+ +..|.+++.|+... . .+. ....|.+++ +....+..+++|++..+-...+.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~---~~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~~ 72 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN---ETNEVNFRE------IPSHVLSKVCMYFTYKVRYTNSST 72 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC-----------CEEECSS------CCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccc---cCCceeCCC------CCHHHHHHHHHHHHHccccCCCcc
Confidence 34443 79999999996 88999999999753 2 221 224677777 88889999999997643211110
Q ss_pred CCcc-cccCCCCCCCCchhhhhhhhHHHHHHHcC
Q 038955 89 EVSA-CVDDACAHSTCPPAINYVIELMYASAAFQ 121 (380)
Q Consensus 89 ~~~~-c~~~~c~~~~~~~~~~~~~~~L~~A~~~~ 121 (380)
.... -.+. +.+..++.+|.+++
T Consensus 73 ~i~~w~vd~-----------~~l~eLi~AAnyLd 95 (96)
T 2fnj_C 73 EIPEFPIAP-----------EIALELLMAANFLD 95 (96)
T ss_dssp CCCCCCCCT-----------TTHHHHHHHHHHHT
T ss_pred cCCCcccCH-----------HHHHHHHHHHHHhC
Confidence 0000 0111 56778888887764
No 142
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=95.61 E-value=0.053 Score=43.12 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=68.2
Q ss_pred eEEEE-cCeeeeeeeeeeecccHHHHHHHhccCCC-CCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCC-
Q 038955 13 AEIVV-EGKSVAVNRSILSERSQFFRWLFNLRNDG-SVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPE- 89 (380)
Q Consensus 13 ~~~~~-~~~~~~~h~~iL~~~s~~f~~l~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~- 89 (380)
|++.- +|+.|.+++.+ +..|..++.|+.....+ ........|.+++ ++...+..+++|++..+-...+..
T Consensus 9 i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplpn------V~s~iL~kVieyc~~h~~~~~~~~~ 81 (169)
T 3v7d_A 9 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPN------VRSSVLQKVIEWAEHHRDSNFPDED 81 (169)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTT------CCHHHHHHHHHHHHHTTTCCCCC--
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCC------CCHHHHHHHHHHHHHcccCCCcccc
Confidence 44443 69999999997 77899999999754221 0000124677776 888899999999966543322110
Q ss_pred -Ccc-cccC-CCCCCC--CchhhhhhhhHHHHHHHcCcHHHHHHHHHhccC
Q 038955 90 -VSA-CVDD-ACAHST--CPPAINYVIELMYASAAFQMTDLVSILQDLFLY 135 (380)
Q Consensus 90 -~~~-c~~~-~c~~~~--~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 135 (380)
.+. ..+. .-|+.. -.+ .+.+..++.+|.+++...++.+..+..++
T Consensus 82 ~~~~~~~~~i~~wD~~Fl~vd-~~~LfeLi~AAnyLdIk~Lldl~c~~vA~ 131 (169)
T 3v7d_A 82 DDDSRKSAPVDSWDREFLKVD-QEMLYEIILAANYLNIKPLLDAGCKVVAE 131 (169)
T ss_dssp ------CCCCCHHHHHHTCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHcCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 000 0000 000000 011 15677889999999999998887776655
No 143
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=94.52 E-value=0.15 Score=41.43 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=67.8
Q ss_pred CCccc-eEEEEcCeeeeeeeeeeeccc-HHHHHHHhccCCC-CCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccc
Q 038955 8 ETWLD-AEIVVEGKSVAVNRSILSERS-QFFRWLFNLRNDG-SVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTK 84 (380)
Q Consensus 8 ~~~~D-~~~~~~~~~~~~h~~iL~~~s-~~f~~l~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~ 84 (380)
+..++ |+|.|+|..|..-+..|.... .+|..||.+...- ........+-+ | -....|..+|.|+-+|++.
T Consensus 8 g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-D------RDP~~F~~ILnyLRtG~L~ 80 (202)
T 3drx_A 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-D------RDPTYFGPVLNYLRHGKLV 80 (202)
T ss_dssp SCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-C------SCSTTHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-c------CChHHHHHHHHHhcCCccC
Confidence 33444 568999999999999998654 3678888765221 01112234444 3 3445999999999999886
Q ss_pred cCCCCCcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHHHHHHHhc
Q 038955 85 ASPPEVSACVDDACAHSTCPPAINYVIELMYASAAFQMTDLVSILQDLF 133 (380)
Q Consensus 85 ~~~~~~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 133 (380)
..+.- ....++.-|.+|++.++++.|.+..
T Consensus 81 lP~~~-------------------~~~~l~eEA~FygL~~Lv~~l~~~i 110 (202)
T 3drx_A 81 INKDL-------------------AEEGVLEEAEFYNITSLIKLVKDKI 110 (202)
T ss_dssp CCTTS-------------------CHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCC-------------------CHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 54321 1145789999999999999887543
No 144
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=89.91 E-value=0.45 Score=34.75 Aligned_cols=60 Identities=8% Similarity=0.161 Sum_probs=42.8
Q ss_pred eEEE-EcCeeeeeeeeeeecccHHHHHHHhccC--CCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCc
Q 038955 13 AEIV-VEGKSVAVNRSILSERSQFFRWLFNLRN--DGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGK 82 (380)
Q Consensus 13 ~~~~-~~~~~~~~h~~iL~~~s~~f~~l~~~~~--~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~ 82 (380)
|++. -+|..|.+.+. .+..|..++.|+.... .+ .....|.+++ +....+..+++|++..+
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e---~~~~~Iplpn------V~s~iL~kVieyc~~h~ 81 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAE---NETNEVNFRE------IPSHVLSKVCMYFTYKV 81 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC-----------CEEECSS------CCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCccc---ccCCceeCCC------CCHHHHHHHHHHHHHhh
Confidence 4444 37999999998 4679999999997531 12 0123677776 88889999999996543
No 145
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=72.65 E-value=3 Score=30.94 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=51.8
Q ss_pred cceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCC-CCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCC
Q 038955 11 LDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGS-VSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPE 89 (380)
Q Consensus 11 ~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~ 89 (380)
.-|++.|||..|..-+..|..... ++|....... -+.....+-+ | -....|..+|.|+-+|++...+ +
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-D------Rdp~~F~~ILnflR~G~l~~p~-~ 81 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-D------RDPEVFRCVLNFYRTGKLHYPR-Y 81 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-C------SCHHHHHHHHHHHHHSCBCCCT-T
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-c------CChHHHHHHHHHHhcCCCCCCC-C
Confidence 347799999999999988864322 1232210000 0001223333 2 4778999999999999886432 2
Q ss_pred CcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHH
Q 038955 90 VSACVDDACAHSTCPPAINYVIELMYASAAFQMTDL 125 (380)
Q Consensus 90 ~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~l 125 (380)
. ....++.-|.++++..+
T Consensus 82 ~------------------~~~~l~~Ea~fy~i~~l 99 (124)
T 1s1g_A 82 E------------------CISAYDDELAFYGILPE 99 (124)
T ss_dssp S------------------CHHHHHHHHHHTTCCGG
T ss_pred c------------------CHHHHHHHHHHcCCChH
Confidence 1 22456777777777665
No 146
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=70.53 E-value=2.3 Score=31.13 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=52.5
Q ss_pred ceEEEEcCeeeeeeeeeeecccH-HHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCCC
Q 038955 12 DAEIVVEGKSVAVNRSILSERSQ-FFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPEV 90 (380)
Q Consensus 12 D~~~~~~~~~~~~h~~iL~~~s~-~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~~ 90 (380)
-|++.|||..|...+..|..... .+..|+.+... .+....++-+ | -....|..+|.|+-+|++...+.-
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~--~~~~~g~~Fi-D------Rdp~~F~~ILnylR~G~l~~p~~~- 75 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLN--YDPVLNEYFF-D------RHPGVFAQIINYYRSGKLHYPTDV- 75 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTT--EETTTTEEEE-C------SCTTTHHHHHHHHHHSCBCCCSSS-
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCC--CCCCCCcEEE-e------cChHHHHHHHHHhcCCCCCCCCcc-
Confidence 37799999999999998875532 23444443210 0012234444 3 345599999999999988654321
Q ss_pred cccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHH
Q 038955 91 SACVDDACAHSTCPPAINYVIELMYASAAFQMTDL 125 (380)
Q Consensus 91 ~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~l 125 (380)
....++.-|.++++.+.
T Consensus 76 ------------------~~~~~~~Ea~fy~i~~~ 92 (115)
T 3kvt_A 76 ------------------CGPLFEEELEFWGLDSN 92 (115)
T ss_dssp ------------------CHHHHHHHHHHHTCCGG
T ss_pred ------------------cHHHHHHHHHHhCCChH
Confidence 12345667777766553
No 147
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=64.83 E-value=4.2 Score=30.85 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=51.3
Q ss_pred cceEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCC-CCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccCCCC
Q 038955 11 LDAEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGS-VSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKASPPE 89 (380)
Q Consensus 11 ~D~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~~~~ 89 (380)
.-|++.|+|..|...+..|..... .+|....... -+....++-+ | -....|..+|.|+-+|++...+ +
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-D------Rdp~~F~~ILnflR~G~l~~p~-~ 103 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-D------RDPEVFRCVLNFYRTGKLHYPR-Y 103 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-C------SCHHHHHHHHHHHHHSSBCCCT-T
T ss_pred CEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-e------CCcHHHHHHHHHHhcCCcCCCC-C
Confidence 347799999999999988864322 2232210000 0001223333 2 4778999999999999886432 2
Q ss_pred CcccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHH
Q 038955 90 VSACVDDACAHSTCPPAINYVIELMYASAAFQMTDL 125 (380)
Q Consensus 90 ~~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~l 125 (380)
. ....++.-|.++++..+
T Consensus 104 ~------------------~~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 104 E------------------CISAYDDELAFYGILPE 121 (140)
T ss_dssp S------------------CHHHHHHHHHHHTCCGG
T ss_pred c------------------CHHHHHHHHHHcCCChH
Confidence 1 12456677777777654
No 148
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=60.89 E-value=6.7 Score=27.74 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=52.3
Q ss_pred eEEEEcCeeeeeeeeeeecccH-HHHHHHhccCCCCCCCCCCceeecCCcCCCcccHHHHHHHHHHHhc-CccccCCCCC
Q 038955 13 AEIVVEGKSVAVNRSILSERSQ-FFRWLFNLRNDGSVSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYT-GKTKASPPEV 90 (380)
Q Consensus 13 ~~~~~~~~~~~~h~~iL~~~s~-~f~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~-g~~~~~~~~~ 90 (380)
|++.|+|..|...+..|..-.. .+..++.....- +....++-+ | -....|..+|.|+-+ |++...+ ..
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~--~~~~~eyFi-D------Rdp~~F~~ILnflR~~G~l~~p~-~~ 72 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYY--DPLRNEYFF-D------RNRPSFDAILYFYQSGGRLRRPV-NV 72 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGE--ETTTTEEEE-C------SCSTTHHHHHHHHHTTSCCCCCT-TS
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhcccccc--CCCceeEEE-c------CChHHHHHHHHHHhcCCcccCCC-CC
Confidence 6799999999999988854321 223333321000 001234444 3 244599999999998 8875433 21
Q ss_pred cccccCCCCCCCCchhhhhhhhHHHHHHHcCcHHHH
Q 038955 91 SACVDDACAHSTCPPAINYVIELMYASAAFQMTDLV 126 (380)
Q Consensus 91 ~~c~~~~c~~~~~~~~~~~~~~~L~~A~~~~~~~lv 126 (380)
....++.-|.+++..+.+
T Consensus 73 ------------------~~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 73 ------------------PLDVFSEEIKFYELGENA 90 (100)
T ss_dssp ------------------CHHHHHHHHHHTTCCHHH
T ss_pred ------------------CHHHHHHHHHHcCCCHHH
Confidence 224567888888887654
No 149
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=42.32 E-value=74 Score=24.99 Aligned_cols=134 Identities=9% Similarity=-0.089 Sum_probs=76.1
Q ss_pred hhHHHHHHHcCcHHHHHHHHHhccCcccCCCCCCCchHHHHHHhhChHHHHHHHHHHhhccCCCccccCCCchHHHHHHh
Q 038955 111 IELMYASAAFQMTDLVSILQDLFLYEAEDAPVEDVIPILVAAFHCQLNKLRFFCIQRIARSNLDNVCLEKELPDEVSREI 190 (380)
Q Consensus 111 ~~~L~~A~~~~~~~lv~~ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~lv~~l~~~~~~~~~~~~~~~g~t~l~~a~~~ 190 (380)
.+=+..|...|+.+....+.+..-+ ...+..+-..|...|+.++++.|..... |..+..-|+.+...
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND------SITWERLIQEALAQGNASLAEMIYQTQH-------SFDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC------HHHHHHHHHHHHHTTCHHHHHHHHHHTT-------CHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC------HHHHHHHHHHHHHcCChHHHHHHHHHhC-------CHHHHHHHHHHhCC
Confidence 3457889999999988776654422 3456777888999999999999987632 22232333332111
Q ss_pred hhhhhhhcccccccccCCCcCCcccchHHHHHHHcCCH-HHHHHHHHCCCCCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 038955 191 KSLRVKSNQESEANIAEVDPMHAKIVSRIHKALDSDDI-ELLKLLLDVSNVTLDDAYALHYAAAYCSPKVFKEVLNMGLA 269 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~g~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~a 269 (380)
..-...... +-....+-+.+++.+...|+. +.+++|++.|. -.-+...|-.+|..+....++..-|.
T Consensus 76 ~e~L~kla~--------iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 76 VNKLSKMQN--------IAQTREDFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAYAVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHH--------HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--------HHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHHHHHHHcCcHHHHHHHHHHhCC
Confidence 111000000 001122335567777777775 45666666541 11234566667777888777766433
No 150
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=40.70 E-value=22 Score=19.89 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.1
Q ss_pred HHHHHHcCCHHHHHHHH
Q 038955 219 IHKALDSDDIELLKLLL 235 (380)
Q Consensus 219 L~~A~~~~~~~~~~~Ll 235 (380)
+..||+.|+.+.++.|=
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 67889999999988773
No 151
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=39.54 E-value=18 Score=25.74 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=37.9
Q ss_pred eEEEEcCeeeeeeeeeeecccHHHHHHHhccCCCC-CCCCCCceeecCCcCCCcccHHHHHHHHHHHhcCccccC
Q 038955 13 AEIVVEGKSVAVNRSILSERSQFFRWLFNLRNDGS-VSEGKPKYLLTDLVPHGKVGYEAFNDILYYLYTGKTKAS 86 (380)
Q Consensus 13 ~~~~~~~~~~~~h~~iL~~~s~~f~~l~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~ly~g~~~~~ 86 (380)
|++.|+|..|...+..|..... ++|....... .+.....+-+ | -....|..+|.|+-+|++...
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-D------Rdp~~F~~ILnflR~g~l~~p 66 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-D------RDPDIFRHILNFYRTGKLHYP 66 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-C------SCTTTHHHHHHHHHHSCBCCC
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-e------CCcHHHHHHHHHHhcCCCCCC
Confidence 7899999999999888864322 1222210000 0001123333 2 345599999999999987543
No 152
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.52 E-value=69 Score=28.18 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=9.0
Q ss_pred ecccHHHHHHHhcc
Q 038955 30 SERSQFFRWLFNLR 43 (380)
Q Consensus 30 ~~~s~~f~~l~~~~ 43 (380)
+.||+-|..+=...
T Consensus 2 ~~~~~l~e~~r~~~ 15 (351)
T 3gvo_A 2 TGRSRLLEDFRNNR 15 (351)
T ss_dssp -CCCHHHHHHHTTC
T ss_pred CCccHHHHHHhCCC
Confidence 46888887766554
Done!