BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038957
SFMAAEFGTDYKGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNI
VLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKN
GTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIKG

High Scoring Gene Products

Symbol, full name Information P value
AT2G01680 protein from Arabidopsis thaliana 2.3e-05
AT4G05040 protein from Arabidopsis thaliana 0.00099

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038957
        (169 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2065434 - symbol:AT2G01680 "AT2G01680" species...   118  2.3e-05   1
TAIR|locus:2138391 - symbol:AT4G05040 "AT4G05040" species...   107  0.00099   1


>TAIR|locus:2065434 [details] [associations]
            symbol:AT2G01680 "AT2G01680" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0005886
            "plasma membrane" evidence=IDA] InterPro:IPR002110 Pfam:PF00023
            PROSITE:PS50088 SMART:SM00248 GO:GO:0016021 GO:GO:0005886
            EMBL:CP002685 GenomeReviews:CT485783_GR eggNOG:COG0666
            Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
            PROSITE:PS50297 HSSP:Q8TDY4 EMBL:AC006069 InterPro:IPR027001
            PANTHER:PTHR24177 EMBL:AY084921 IPI:IPI00528679 PIR:G84427
            RefSeq:NP_565274.1 UniGene:At.26721 ProteinModelPortal:Q9ZU96
            SMR:Q9ZU96 PRIDE:Q9ZU96 EnsemblPlants:AT2G01680.1 GeneID:814697
            KEGG:ath:AT2G01680 TAIR:At2g01680 HOGENOM:HOG000234376
            InParanoid:Q9ZU96 OMA:VVNKLMW PhylomeDB:Q9ZU96
            ProtClustDB:CLSN2682034 Genevestigator:Q9ZU96 InterPro:IPR027002
            InterPro:IPR026961 PANTHER:PTHR24177:SF1 Pfam:PF13962
            Uniprot:Q9ZU96
        Length = 532

 Score = 118 (46.6 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 28/95 (29%), Positives = 47/95 (49%)

Query:    40 IRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIA 99
             ++ L  +   I      +G   LHMA++ +  +VV+EIL    ++L + + KG TAL IA
Sbjct:   178 VKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIA 237

Query:   100 ARAGDPAIVSTLLNYVPAVKNGTEAEPESLLRMTE 134
              R   P I S LL +     N    + E+ + + +
Sbjct:   238 TRKARPQITSLLLTFTAIEVNAINNQKETAMDLAD 272


>TAIR|locus:2138391 [details] [associations]
            symbol:AT4G05040 "AT4G05040" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR002110 Pfam:PF00023
            PROSITE:PS50088 SMART:SM00248 EMBL:CP002687 Gene3D:1.25.40.20
            InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297
            InterPro:IPR026961 Pfam:PF13962 EMBL:AY049276 EMBL:BT030351
            EMBL:AK317522 IPI:IPI00526626 RefSeq:NP_001031584.1
            RefSeq:NP_001190679.1 RefSeq:NP_001190680.1 RefSeq:NP_567285.1
            RefSeq:NP_974514.1 UniGene:At.4061 ProteinModelPortal:Q94A85
            SMR:Q94A85 STRING:Q94A85 PRIDE:Q94A85 EnsemblPlants:AT4G05040.1
            EnsemblPlants:AT4G05040.2 EnsemblPlants:AT4G05040.3
            EnsemblPlants:AT4G05040.4 EnsemblPlants:AT4G05040.5 GeneID:825846
            KEGG:ath:AT4G05040 InParanoid:Q94A85 ProtClustDB:CLSN2689356
            Genevestigator:Q94A85 Uniprot:Q94A85
        Length = 572

 Score = 107 (42.7 bits), Expect = 0.00099, P = 0.00099
 Identities = 37/136 (27%), Positives = 66/136 (48%)

Query:    24 MDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLS 83
             M+ E+ + L   D+  + +L      +    S RG+ VLH+A R+   ++V+ I+     
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHLAARWGHLELVKNIISECPC 140

Query:    84 LLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR---MTEFEGNTS 140
             L+ + N+K +  L +AA AG  AIV  L+  V    +    E    L    + +  GNT+
Sbjct:   141 LVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVLRDKYGNTA 200

Query:   141 LHNGVGEYFIKLYKSL 156
             LH  +   ++++  SL
Sbjct:   201 LHLAIEGRYMEMAASL 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       169   0.00082  108 3  11 22  0.38    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.16u 0.11s 16.27t   Elapsed:  00:00:00
  Total cpu time:  16.16u 0.11s 16.27t   Elapsed:  00:00:00
  Start:  Fri May 10 02:31:50 2013   End:  Fri May 10 02:31:50 2013

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