BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038957
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + G+ LH+A R
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHL 60
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNY 114
++V E+L + + + ++ G T L +AA+ G IV LL Y
Sbjct: 61 EIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + M G LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHL 60
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
++V+ +L + ++W G T L +AA G IV LL Y G + +
Sbjct: 61 EIVEVLLKHGADVNASDSW-GRTPLHLAATVGHLEIVEVLLEY------GADVNAQDKFG 113
Query: 132 MTEFEGNTSLHNG 144
T F+ S+ NG
Sbjct: 114 KTAFD--ISIDNG 124
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 27 ELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLR 86
+LL R + ++R+L ++ + +GN LH+A + ++V E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIV-EVLLKHGADVN 74
Query: 87 KNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNG 144
++ G T L +AA G IV LL K+G + + T F+ S+ NG
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLL------KHGADVNAQDKFGKTAFD--ISIDNG 124
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + M G LH+A + + H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGH 59
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
+ E+L + + + ++ G T L +AA G IV LL Y G + +
Sbjct: 60 LEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEY------GADVNAQDKFG 113
Query: 132 MTEFEGNTSLHNG 144
T F+ S+ NG
Sbjct: 114 KTAFD--ISIDNG 124
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + M G LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHL 60
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
++V+ +L + ++ W G T L +AA G IV LL Y G + +
Sbjct: 61 EIVEVLLKHGADVNARDIW-GRTPLHLAATVGHLEIVEVLLEY------GADVNAQDKFG 113
Query: 132 MTEFEGNTSLHNG 144
T F+ S+ NG
Sbjct: 114 KTAFD--ISIDNG 124
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + G LH+A R + H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGH 59
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
+ E+L + + + + G T L +AAR G IV LL K G + +
Sbjct: 60 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL------KAGAD------VN 107
Query: 132 MTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
+ +G T LH E +++ + L G V ++ K
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 76 EILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNY--VPAVKNGTEAEP 126
++ W ++L + G+T L IAAR G+ +IV LL+Y P + N + P
Sbjct: 267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 92 GETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR-MTE--FEGNTSLHNGVGEY 148
GETAL IAA L + + A EA PE + MT +EG T+LH V
Sbjct: 37 GETALHIAA----------LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86
Query: 149 FIKLYKSLHARGTGVFSKIKG 169
+ L ++L ARG V ++ G
Sbjct: 87 NVNLVRALLARGASVSARATG 107
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 27 ELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLR 86
+LL R + ++R+L ++ + G LH+A R + H + E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 87 KNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNGVG 146
+ G T L +AAR G IV LL K G + + + +G T LH
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLL------KAGAD------VNAKDKDGYTPLHLAAR 110
Query: 147 EYFIKLYKSLHARGTGVFSKIK 168
E +++ + L G V ++ K
Sbjct: 111 EGHLEIVEVLLKAGADVNAQDK 132
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 22/161 (13%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNI----FSTMSPRGNIVLHMAIR 67
+GS + + +LL R + ++R+L ++ F+ +P LH+A
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTP-----LHLAAH 56
Query: 68 FQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPE 127
F ++V E+L + + + + G T L +AAR G IV LL KNG +
Sbjct: 57 FGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL------KNGAD---- 105
Query: 128 SLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
+ ++ G T LH +++ + L G V ++ K
Sbjct: 106 --VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 27 ELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLR 86
+LL R + ++R+L ++ + G LH+A R + H + E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 87 KNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNGVG 146
+ G T L +AAR G IV LL K G + + + +G T LH
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLL------KAGAD------VNAKDKDGYTPLHLAAR 110
Query: 147 EYFIKLYKSLHARGTGVFSKIK 168
E +++ + L G V ++ K
Sbjct: 111 EGHLEIVEVLLKAGADVNAQDK 132
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 1 SFMAAEFGTDYKGSIMDQELP---TTMDHELLNVLRREDEH---------QIRLLAVRMQ 48
+ +A E D ++ ++EL TT+ E L + R D H R ++ R+
Sbjct: 41 ACLALEKYLDNPNALTERELKVAYTTVLQEWLRLACRSDAHPELVRRHLVTFRAMSARLL 100
Query: 49 N-IFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARA 102
+ + + GN LH ++ VVQ++L + + K N G + +++ A A
Sbjct: 101 DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + +G+ LH+A + H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLA-AWIGH 59
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNY 114
+ E+L + + + + G T L +AA G IV LL Y
Sbjct: 60 PEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + G LH+A + H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLA-AIKGH 59
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
+ E+L + + + + G+T L +AA G IV LL KNG + +
Sbjct: 60 LEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL------KNGAD------VN 107
Query: 132 MTEFEGNTSLH 142
T+ G T LH
Sbjct: 108 ATDTYGFTPLH 118
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPA 117
G+ LH+A + ++V E+L + + + + G T L +AA AG IV LL Y
Sbjct: 80 GDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY--- 135
Query: 118 VKNGTEAEPESLLRMTEFEGNTSLHNG 144
G + + T F+ S+ NG
Sbjct: 136 ---GADVNAQDKFGKTAFD--ISIDNG 157
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWR--QLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYV 115
G I LH ++ FQ H++ +L + ++L + G T IA G+ +V +L +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-- 93
Query: 116 PAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
+P+ L ++T +G T LH VG+ + ++ + L G V K K
Sbjct: 94 ------RPLKPD-LNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWR--QLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYV 115
G I LH ++ FQ H++ +L + ++L + G T IA G+ +V +L +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-- 93
Query: 116 PAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
+P+ L ++T +G T LH VG+ + ++ + L G V K K
Sbjct: 94 ------RPLKPD-LNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWR--QLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYV 115
G I LH ++ FQ H++ +L + ++L + G T IA G+ +V +L +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-- 93
Query: 116 PAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
+P+ L ++T +G T LH VG+ + ++ + L G V K K
Sbjct: 94 ------RPLKPD-LNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + + G LH+A H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLA-AVSGH 59
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
+ E+L + + + + G T L +AA G IV LL Y V +
Sbjct: 60 LEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV---------NAFD 110
Query: 132 MTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
MT G+T LH E +++ + L G V ++ K
Sbjct: 111 MT---GSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 44/158 (27%)
Query: 17 DQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQE 76
+ L TT H L++ RE + L + + + M+ +G LH+A ++ K +V +
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 77 ILWRQLS--------------LLRKNN------------------WKGETALLIAARAGD 104
+L R + NN W G T L IAA+
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224
Query: 105 PAIVSTLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLH 142
+ +LL Y G A ES+ +G T LH
Sbjct: 225 VEVARSLLQY------GGSANAESV------QGVTPLH 250
>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase
From Neisseria Meningitides Mc58
pdb|2AG8|A Chain A, Nadp Complex Of Pyrroline-5-Carboxylate Reductase From
Neisseria Meningitidis
Length = 263
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 105 PAIVSTLLNYV--PAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARG 160
PA V LL+ + A++ G + L + F+G +L GE F KL K++ ++G
Sbjct: 168 PAYVFYLLDALQNAAIRQGFDXAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKG 225
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ +T G LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHL 60
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNY 114
++V E+L + + + + G T L +AA G IV LL +
Sbjct: 61 EIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
>pdb|3FJN|A Chain A, The Crystal Structure Of 17-Alpha Hydroxysteroid
Dehydrogenase Y224d Mutant.
pdb|3FJN|B Chain B, The Crystal Structure Of 17-Alpha Hydroxysteroid
Dehydrogenase Y224d Mutant
Length = 323
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 7 FGTDYKGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAI 66
GT G +DQ P +D +L + ++ L+A+R Q RG +VL+ ++
Sbjct: 219 LGTQRDGGWVDQNSPVLLDEPVLGSMAKKYNRTPALIALRYQ------LQRGIVVLNTSL 272
Query: 67 RFQKHKVVQEILWRQLS 83
+ ++ K ++ QLS
Sbjct: 273 KEERIKENMQVFEFQLS 289
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 27 ELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLR 86
+LL R + ++R+L + + G LHMA ++V E+L R + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVN 62
Query: 87 KNNWKGETALLIAARAGDPAIVSTLLNYVPAV--KNGTEAEP 126
+ G T L +AA G IV LL Y V K+ T P
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITP 104
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 49 NIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIV 108
N + T+ G+ LH+A F ++V E+L + + + + G T L +AA G IV
Sbjct: 74 NAYDTL---GSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 109 STLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNG 144
LL Y G + + T F+ S++NG
Sbjct: 130 EVLLKY------GADVNAQDKFGKTAFD--ISINNG 157
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ +T G LH+A +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHL 60
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNY 114
++V E+L + + + + G T L +AA G IV LL +
Sbjct: 61 EIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
>pdb|2HE5|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE5|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE5|C Chain C, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE5|D Chain D, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Binary Complex With Nadp(H) In An Open Conformation
pdb|2HE8|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Its Apo- Form
pdb|2HE8|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Its Apo- Form
pdb|2HEJ|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp(H) In A Closed Conformation
pdb|2HEJ|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp(H) In A Closed Conformation
pdb|2P5N|A Chain A, Crystal Structure Of Mouse 17-Alpha Hydroxysteroid
Dehydrogenase In Complex With Coenzyme Nadph
pdb|2P5N|B Chain B, Crystal Structure Of Mouse 17-Alpha Hydroxysteroid
Dehydrogenase In Complex With Coenzyme Nadph
Length = 323
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 7 FGTDYKGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAI 66
GT G +DQ P +D +L + ++ L+A+R Q RG +VL+ ++
Sbjct: 219 LGTQRYGGWVDQNSPVLLDEPVLGSMAKKYNRTPALIALRYQ------LQRGIVVLNTSL 272
Query: 67 RFQKHKVVQEILWRQLS 83
+ ++ K ++ QLS
Sbjct: 273 KEERIKENMQVFEFQLS 289
>pdb|2IPG|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
Mutant K31a In Complex With Nadp+ And Epi-Testosterone
pdb|2IPG|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
Mutant K31a In Complex With Nadp+ And Epi-Testosterone
Length = 319
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 7 FGTDYKGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAI 66
GT G +DQ P +D +L + ++ L+A+R Q RG +VL+ ++
Sbjct: 215 LGTQRYGGWVDQNSPVLLDEPVLGSMAKKYNRTPALIALRYQ------LQRGIVVLNTSL 268
Query: 67 RFQKHKVVQEILWRQLS 83
+ ++ K ++ QLS
Sbjct: 269 KEERIKENMQVFEFQLS 285
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 52 STMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTL 111
+ M+P L +A F ++V E+L + + + N+ +G T L +AA G IV L
Sbjct: 79 AGMTP-----LRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 112 LNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNG 144
L KNG + + T F+ S+ NG
Sbjct: 133 L------KNGADVNAQDKFGKTAFD--ISIDNG 157
>pdb|2IPF|A Chain A, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp+ And Epi-Testosterone
pdb|2IPF|B Chain B, Crystal Structure Of 17alpha-Hydroxysteroid Dehydrogenase
In Complex With Nadp+ And Epi-Testosterone
Length = 318
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 7 FGTDYKGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAI 66
GT G +DQ P +D +L + ++ L+A+R Q RG +VL+ ++
Sbjct: 214 LGTQRYGGWVDQNSPVLLDEPVLGSMAKKYNRTPALIALRYQ------LQRGIVVLNTSL 267
Query: 67 RFQKHKVVQEILWRQLS 83
+ ++ K ++ QLS
Sbjct: 268 KEERIKENMQVFEFQLS 284
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 62 LHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNG 121
LH+A ++ H + E+L + + + +++G T L +AA G IV LL Y G
Sbjct: 84 LHLA-AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY------G 136
Query: 122 TEAEPESLLRMTEFEGNTSLHNG 144
+ + T F+ S+ NG
Sbjct: 137 ADVNAQDKFGKTAFD--ISIDNG 157
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%)
Query: 12 KGSIMDQELPTTMDHELLNVLRREDEHQIRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKH 71
+GS + + +LL R + ++R+L ++ + G LH+ + H
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAN-DWFGITPLHLVVN-NGH 59
Query: 72 KVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKNGTEAEPESLLR 131
+ E+L + + + ++ G T L +AA G IV LL Y V
Sbjct: 60 LEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV------------N 107
Query: 132 MTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVFSKIK 168
+++G T LH + +++ + L G V ++ K
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 60 IVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVK 119
+ LH+A + Q H V + L + K + G T L+ A G +V+ LL + ++
Sbjct: 121 VPLHLACQ-QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Query: 120 NGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGV 163
+ +GNT+LH V E + + + L G V
Sbjct: 180 ------------ASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 52 STMSPRGNIVLHMAIRFQKHKVVQEIL---WRQLSLLRKNNWKGETALLIAARAGDPAIV 108
S +GN L+ A+ + V+ + WR L K WK T+ A D +IV
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR-LXFYGKTGWK--TSFYHAVXLNDVSIV 145
Query: 109 STLLNYVPA 117
S L+ +P+
Sbjct: 146 SYFLSEIPS 154
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 62 LHMAIRFQKHKVVQEILWRQLSL-LRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKN 120
LH+A+ + ++ + +L LR +++G T L +A G A V L ++
Sbjct: 46 LHLAVITNQPEIAEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVL------TQS 97
Query: 121 GTEAEPESLLRMTEFEGNTSLH 142
T S+L+ T + G+T LH
Sbjct: 98 CTTPHLHSILKATNYNGHTCLH 119
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 62 LHMAIRFQKHKVVQEILWRQLSL-LRKNNWKGETALLIAARAGDPAIVSTLLNYVPAVKN 120
LH+A+ + ++ + +L LR +++G T L +A G A V L ++
Sbjct: 49 LHLAVITNQPEIAEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVL------TQS 100
Query: 121 GTEAEPESLLRMTEFEGNTSLH 142
T S+L+ T + G+T LH
Sbjct: 101 CTTPHLHSILKATNYNGHTCLH 122
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 51 FSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVST 110
+ ++ G LH A +H++ +L + K++++ TA+ AA G+ ++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHI 157
Query: 111 LLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVF 164
LL Y + + + EGNT LH E ++ K L ++G ++
Sbjct: 158 LLYYKAST------------NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 199
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTL 111
GN+ LH+A + +VV+ ++ S + N KG+TA +A G +VS +
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTL 111
GN+ LH+A + +VV+ ++ S + N KG+TA +A G +VS +
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 51 FSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVST 110
+ ++ G LH A +H++ +L + K++++ TA+ AA G+ ++
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRAAAKGNLKMIHI 158
Query: 111 LLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHARGTGVF 164
LL Y + + + EGNT LH E ++ K L ++G ++
Sbjct: 159 LLYYKAST------------NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 200
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTL 111
GN+ LH+A + +VV+ ++ S + N KG+TA +A G +VS +
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTL 111
GN+ LH+A + +VV+ ++ S + N KG+TA +A G +VS +
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTL 111
GN+ LH+A + +VV+ ++ S + N KG+TA +A G +VS +
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 58 GNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIAARAGDPAIVSTLLNYVPA 117
G LH+A H + E+L + + + +++G T L +AA G IV LL Y
Sbjct: 80 GATPLHLAAD-NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY--- 135
Query: 118 VKNGTEAEPESLLRMTEFEGNTSLHNG 144
G + + T F+ S+ NG
Sbjct: 136 ---GADVNAQDKFGKTAFD--ISIDNG 157
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 40 IRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIA 99
++ L V+ ++ + ++ G LH A +H++ +L + K+++ TA+ A
Sbjct: 89 VKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRA 146
Query: 100 ARAGDPAIVSTLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHAR 159
A G+ +V LL Y + + + EGNT LH E ++ K L +
Sbjct: 147 AAKGNLKMVHILLFYKAST------------NIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
Query: 160 GTGVF 164
G ++
Sbjct: 195 GASIY 199
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 40 IRLLAVRMQNIFSTMSPRGNIVLHMAIRFQKHKVVQEILWRQLSLLRKNNWKGETALLIA 99
++ L V+ ++ + ++ G LH A +H++ +L + K+++ TA+ A
Sbjct: 89 VKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRA 146
Query: 100 ARAGDPAIVSTLLNYVPAVKNGTEAEPESLLRMTEFEGNTSLHNGVGEYFIKLYKSLHAR 159
A G+ +V LL Y + + + EGNT LH E ++ K L +
Sbjct: 147 AAKGNLKMVHILLFYKAST------------NIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
Query: 160 GTGVF 164
G ++
Sbjct: 195 GASIY 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,693
Number of Sequences: 62578
Number of extensions: 185620
Number of successful extensions: 442
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 61
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)