BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038961
         (457 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
          Cys2his2 Zinc Finger Induces Structural Rearrangements
          Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
          From Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 30.4 bits (67), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 6  HVCKFCSKSFPCGRSLGGHMRSH 28
          + C FC + F   ++LGGHM  H
Sbjct: 7  YTCSFCKREFRSAQALGGHMNVH 29



 Score = 28.1 bits (61), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 369 KKHECPICLKVFPSGQALGGHKRSH 393
           + + C  C + F S QALGGH   H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 29.3 bits (64), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 21/58 (36%)

Query: 283 KFECATCNKIFHSYQALGGHRASHKKIKGCFATKIDSSENSIEAEHSPDPTADSKLIK 340
           +++C  C K F +YQ +  H                     I++ HS DP+ DSKL +
Sbjct: 78  RYQCLACGKSFINYQFMSSH---------------------IKSVHSQDPSGDSKLYR 114


>pdb|2XSJ|A Chain A, Structure Of Desulforubidin From Desulfomicrobium
           Norvegicum
 pdb|2XSJ|D Chain D, Structure Of Desulforubidin From Desulfomicrobium
           Norvegicum
          Length = 437

 Score = 29.3 bits (64), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 25/93 (26%)

Query: 373 CPICLKVFPSGQALGGHKRSHLLGGNEA----------RNSPAIVLENPIPEIRNFLDLN 422
           C  CL V P    +G  +   +L G +A             P I +E+P  EI+  ++  
Sbjct: 306 CMHCLNVMPRALRIGNDRGLSILVGAKAPILDGAQMGSLLVPFIKVEDPYDEIKEIIE-- 363

Query: 423 LPAPDEEDSNAHLGLQQWWISSSHKHEALVSLI 455
                        G+ +WW+      E L  LI
Sbjct: 364 -------------GIWEWWMEEGKNRERLGELI 383


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.125    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,409,574
Number of Sequences: 62578
Number of extensions: 458463
Number of successful extensions: 1010
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 22
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)