Query 038963
Match_columns 117
No_of_seqs 158 out of 1067
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.7 2.1E-17 4.5E-22 122.6 6.9 85 3-117 5-89 (237)
2 PF00335 Tetraspannin: Tetrasp 99.1 1.6E-11 3.4E-16 87.3 0.0 82 6-117 1-82 (221)
3 PF05915 DUF872: Eukaryotic pr 67.6 10 0.00022 25.5 3.7 25 12-36 44-68 (115)
4 cd07912 Tweety_N N-terminal do 58.4 16 0.00035 29.9 3.9 29 87-115 215-243 (418)
5 PF11297 DUF3098: Protein of u 56.0 16 0.00036 22.4 2.8 25 14-38 6-30 (69)
6 PF04156 IncA: IncA protein; 55.5 18 0.00038 25.7 3.4 23 12-34 5-27 (191)
7 PF15345 TMEM51: Transmembrane 54.9 26 0.00055 26.5 4.3 16 82-97 62-77 (233)
8 KOG4433 Tweety transmembrane/c 54.4 21 0.00045 30.0 4.0 31 86-116 215-245 (526)
9 PF04906 Tweety: Tweety; Inte 51.8 17 0.00038 29.4 3.2 27 89-115 194-220 (406)
10 PF04103 CD20: CD20-like famil 50.1 5.3 0.00012 26.7 0.0 29 87-115 37-65 (150)
11 PF01601 Corona_S2: Coronaviru 46.3 6.6 0.00014 33.5 0.0 16 78-93 547-562 (610)
12 PRK11901 hypothetical protein; 46.2 25 0.00053 27.9 3.1 24 82-105 37-60 (327)
13 PF10176 DUF2370: Protein of u 43.6 36 0.00078 25.7 3.6 32 77-108 193-224 (233)
14 PF05640 NKAIN: Na,K-Atpase In 41.2 34 0.00074 25.3 3.0 38 75-115 30-67 (200)
15 KOG4556 Predicted membrane pro 36.2 54 0.0012 24.0 3.3 47 66-115 18-64 (205)
16 PF11014 DUF2852: Protein of u 32.0 41 0.00089 22.7 2.1 23 10-32 13-36 (115)
17 PF06724 DUF1206: Domain of Un 30.4 53 0.0011 19.6 2.2 20 16-35 48-67 (73)
18 PF15048 OSTbeta: Organic solu 30.2 79 0.0017 21.7 3.2 28 8-35 36-63 (125)
19 PF04854 DUF624: Protein of un 28.1 66 0.0014 19.2 2.4 19 12-30 2-23 (77)
20 COG2149 Predicted membrane pro 26.7 1E+02 0.0023 20.9 3.3 25 15-39 60-84 (120)
21 PF11127 DUF2892: Protein of u 26.7 65 0.0014 18.8 2.2 23 82-104 34-56 (66)
22 PRK07946 putative monovalent c 25.4 48 0.001 23.7 1.6 20 15-34 4-23 (163)
23 TIGR01167 LPXTG_anchor LPXTG-m 25.2 68 0.0015 16.0 1.8 19 17-35 12-30 (34)
24 PF13706 PepSY_TM_3: PepSY-ass 24.8 1.2E+02 0.0025 15.9 3.3 24 82-105 10-33 (37)
25 PF13179 DUF4006: Family of un 24.3 1.1E+02 0.0024 18.6 2.8 26 82-107 15-40 (66)
26 PF15471 TMEM171: Transmembran 24.3 61 0.0013 25.3 2.1 22 12-33 112-133 (319)
27 PF06166 DUF979: Protein of un 23.9 1.4E+02 0.003 23.6 3.9 27 15-41 2-28 (308)
28 PRK01844 hypothetical protein; 23.7 1.8E+02 0.0038 18.0 3.7 21 83-103 5-26 (72)
29 PF11381 DUF3185: Protein of u 23.2 59 0.0013 19.3 1.4 17 82-98 42-58 (59)
30 PRK00523 hypothetical protein; 22.8 2E+02 0.0043 17.8 3.8 22 83-104 6-28 (72)
31 PF03729 DUF308: Short repeat 21.7 88 0.0019 17.8 2.1 23 83-105 24-46 (72)
32 PRK12585 putative monovalent c 21.4 1.3E+02 0.0029 22.2 3.2 19 81-99 9-27 (197)
33 PF03597 CcoS: Cytochrome oxid 21.0 1.7E+02 0.0036 16.3 3.7 26 82-107 4-29 (45)
34 PRK01741 cell division protein 20.7 53 0.0012 26.1 1.2 26 14-39 3-33 (332)
35 PF10724 DUF2516: Protein of u 20.4 2.6E+02 0.0057 18.2 5.8 31 9-39 3-33 (100)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.71 E-value=2.1e-17 Score=122.64 Aligned_cols=85 Identities=32% Similarity=0.569 Sum_probs=71.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhheeEEecccccCCCCcCCCCCCCcccccCcchhhhhhhhhhhcccCChhHHHH
Q 038963 3 CRGCLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIY 82 (117)
Q Consensus 3 c~~~lk~~L~~~N~lf~i~G~~li~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (117)
|.+|+||.++.+|+++|++|++++++|+|++.++....+.... . .+.+ ++
T Consensus 5 ~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~-------------~--------------~~~~---~~ 54 (237)
T KOG3882|consen 5 GSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLES-------------D--------------FLVP---AY 54 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhcccc-------------c--------------hhcc---hh
Confidence 4589999999999999999999999999999998765532210 0 0122 37
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcC
Q 038963 83 LFIGVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117 (117)
Q Consensus 83 ~li~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~~l 117 (117)
+++++|++++++|++||+||.|||||+|.+|++++
T Consensus 55 ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l 89 (237)
T KOG3882|consen 55 ILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILL 89 (237)
T ss_pred hhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.09 E-value=1.6e-11 Score=87.31 Aligned_cols=82 Identities=34% Similarity=0.699 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhheeEEecccccCCCCcCCCCCCCcccccCcchhhhhhhhhhhcccCChhHHHHHHH
Q 038963 6 CLECLLKLLNFLLTIVGLAMVGYGIYLFVEYKRADNSGTVSPVSGDEGFVQLGRPMLMAVSLADSIFDKLPKAWFIYLFI 85 (117)
Q Consensus 6 ~lk~~L~~~N~lf~i~G~~li~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 85 (117)
|+|+.++++|+++++.|++++++|+|.+...+......+ .......++++
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~i 50 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSS------------------------------SFISYVIIILI 50 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc------------------------------cchhHHHHHHH
Confidence 789999999999999999999999999422111110000 00011236778
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhhhcC
Q 038963 86 GVGVVLFVISCVGCIGATTRNGCCLTCVSLVL 117 (117)
Q Consensus 86 ~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~~l 117 (117)
.+|.++++++++||+|+.||||+++..|.+++
T Consensus 51 ~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~~~ 82 (221)
T PF00335_consen 51 FIGIFILIISFLGCIGACRKNRCLLIIYIILL 82 (221)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 89999999999999999999999999998753
No 3
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=67.61 E-value=10 Score=25.53 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhheeEEec
Q 038963 12 KLLNFLLTIVGLAMVGYGIYLFVEY 36 (117)
Q Consensus 12 ~~~N~lf~i~G~~li~~G~w~~~~~ 36 (117)
+.+-+.++++|..++..|..+....
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455677899999999998887653
No 4
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=58.36 E-value=16 Score=29.89 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhhh
Q 038963 87 VGVVLFVISCVGCIGATTRNGCCLTCVSL 115 (117)
Q Consensus 87 ~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~ 115 (117)
+=++.+++..++|+|..|.|||.+..+++
T Consensus 215 lL~~~lviC~~~l~gl~r~Sr~~li~~s~ 243 (418)
T cd07912 215 LLSLLLVICLVLLVGLARHSRCLLIVFSV 243 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33456677888899999999999998854
No 5
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=56.01 E-value=16 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhheeEEeccc
Q 038963 14 LNFLLTIVGLAMVGYGIYLFVEYKR 38 (117)
Q Consensus 14 ~N~lf~i~G~~li~~G~w~~~~~~~ 38 (117)
-|.++..+|++++.+|-+...-..+
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~~s 30 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGGGS 30 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCCCC
Confidence 4889999999999999998876443
No 6
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.53 E-value=18 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.688 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhheeEE
Q 038963 12 KLLNFLLTIVGLAMVGYGIYLFV 34 (117)
Q Consensus 12 ~~~N~lf~i~G~~li~~G~w~~~ 34 (117)
.+.+++..++|+++++.|+-.+.
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777766643
No 7
>PF15345 TMEM51: Transmembrane protein 51
Probab=54.94 E-value=26 Score=26.53 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 038963 82 YLFIGVGVVLFVISCV 97 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~ 97 (117)
|+++++|+.+++++++
T Consensus 62 yVLVG~Gv~LLLLSIC 77 (233)
T PF15345_consen 62 YVLVGSGVALLLLSIC 77 (233)
T ss_pred EehhhHHHHHHHHHHH
Confidence 7999999999999994
No 8
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=54.45 E-value=21 Score=29.96 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhhhhc
Q 038963 86 GVGVVLFVISCVGCIGATTRNGCCLTCVSLV 116 (117)
Q Consensus 86 ~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~~ 116 (117)
..=.+.+++-++++.|-.|+|||.+..|.++
T Consensus 215 ~lL~l~LvvC~v~vlglak~Skc~li~fsv~ 245 (526)
T KOG4433|consen 215 LLLTLLLVVCLVLVLGLAKRSKCLLIVFSVC 245 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 3445677888999999999999999998763
No 9
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=51.82 E-value=17 Score=29.36 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhhhh
Q 038963 89 VVLFVISCVGCIGATTRNGCCLTCVSL 115 (117)
Q Consensus 89 ~~~~~v~~~Gc~Ga~~en~~lL~~y~~ 115 (117)
.+.+++.++++.|..|+|||.+..+.+
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v 220 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSV 220 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeee
Confidence 466678888999999999999987665
No 10
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=50.10 E-value=5.3 Score=26.74 Aligned_cols=29 Identities=10% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhhh
Q 038963 87 VGVVLFVISCVGCIGATTRNGCCLTCVSL 115 (117)
Q Consensus 87 ~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~ 115 (117)
.|...++.|.+|.....|.+++++..+.+
T Consensus 37 ~G~~fiisG~l~i~s~k~~~~~lv~~~l~ 65 (150)
T PF04103_consen 37 GGIFFIISGILGIASEKKPTKCLVIASLV 65 (150)
T ss_dssp -----------------------------
T ss_pred HHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence 47777888888988888888888766543
No 11
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=46.34 E-value=6.6 Score=33.51 Aligned_cols=16 Identities=25% Similarity=0.856 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 038963 78 AWFIYLFIGVGVVLFV 93 (117)
Q Consensus 78 ~~~~~~li~~G~~~~~ 93 (117)
||++|+.|+++.+.++
T Consensus 547 PWyVWL~i~~~li~~~ 562 (610)
T PF01601_consen 547 PWYVWLAIILALIAFA 562 (610)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788888887766543
No 12
>PRK11901 hypothetical protein; Reviewed
Probab=46.20 E-value=25 Score=27.94 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 038963 82 YLFIGVGVVLFVISCVGCIGATTR 105 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~e 105 (117)
+++|++|++++++=++|...|+|.
T Consensus 37 h~MiGiGilVLlLLIi~IgSALks 60 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALKS 60 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Confidence 689999999999999999999873
No 13
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=43.64 E-value=36 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.464 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 038963 77 KAWFIYLFIGVGVVLFVISCVGCIGATTRNGC 108 (117)
Q Consensus 77 ~~~~~~~li~~G~~~~~v~~~Gc~Ga~~en~~ 108 (117)
.+|..|+++++|.++++-++.+.+=+.|--|.
T Consensus 193 ~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~ 224 (233)
T PF10176_consen 193 NPWLAYILMAFGWFIFIRSIIDYWRVKRMERL 224 (233)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777999999999999999999988875553
No 14
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=41.19 E-value=34 Score=25.28 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhh
Q 038963 75 LPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSL 115 (117)
Q Consensus 75 ~~~~~~~~~li~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~ 115 (117)
+...|.|++.-..-++. -++|..||.+-++..+..|.+
T Consensus 30 LGyqWaPIl~NF~hIi~---vIlGlFG~~QyR~ryi~~Y~v 67 (200)
T PF05640_consen 30 LGYQWAPILANFLHIIF---VILGLFGAIQYRPRYIIVYAV 67 (200)
T ss_pred HhhhHHHHHHHHHHHHH---HHHHHhhheeecchHHHHHHH
Confidence 33345445544444444 466677788888888888864
No 15
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=36.24 E-value=54 Score=24.00 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=27.2
Q ss_pred hhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhh
Q 038963 66 SLADSIFDKLPKAWFIYLFIGVGVVLFVISCVGCIGATTRNGCCLTCVSL 115 (117)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~li~~G~~~~~v~~~Gc~Ga~~en~~lL~~y~~ 115 (117)
+++.+.+|.+...|.+++.=.+=+++. ++|-.|+....+..+.+|..
T Consensus 18 ~l~RqvFDflGyqWapilanFvhIiiv---IlGLFGtiQyR~ryl~~y~~ 64 (205)
T KOG4556|consen 18 SLERQVFDFLGYQWAPILANFVHIIIV---ILGLFGTIQYRRRYLYTYAS 64 (205)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHhhhhhhcchhHHHHHHH
Confidence 344455554544454455545554444 45566778777777877753
No 16
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=32.03 E-value=41 Score=22.70 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=17.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhee
Q 038963 10 LLKLLNF-LLTIVGLAMVGYGIYL 32 (117)
Q Consensus 10 ~L~~~N~-lf~i~G~~li~~G~w~ 32 (117)
.+.++-+ +||=+|++++++-+|-
T Consensus 13 a~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 13 AAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 4799999999999997
No 17
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=30.37 E-value=53 Score=19.65 Aligned_cols=20 Identities=55% Similarity=1.152 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhheeEEe
Q 038963 16 FLLTIVGLAMVGYGIYLFVE 35 (117)
Q Consensus 16 ~lf~i~G~~li~~G~w~~~~ 35 (117)
.+.+++|+.++++|+|...+
T Consensus 48 ~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999997643
No 18
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=30.25 E-value=79 Score=21.65 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhheeEEe
Q 038963 8 ECLLKLLNFLLTIVGLAMVGYGIYLFVE 35 (117)
Q Consensus 8 k~~L~~~N~lf~i~G~~li~~G~w~~~~ 35 (117)
+|.+..+.++..++|+++++-++-+...
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~ANRn 63 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQANRN 63 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhccc
Confidence 6889999999999999999999887544
No 19
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=28.11 E-value=66 Score=19.20 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.5
Q ss_pred HHHHHHHH---HHHHHHHHHhh
Q 038963 12 KLLNFLLT---IVGLAMVGYGI 30 (117)
Q Consensus 12 ~~~N~lf~---i~G~~li~~G~ 30 (117)
..+|++++ +.|+.++++|-
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigP 23 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGP 23 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 46787777 77777766664
No 20
>COG2149 Predicted membrane protein [Function unknown]
Probab=26.73 E-value=1e+02 Score=20.90 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhheeEEecccc
Q 038963 15 NFLLTIVGLAMVGYGIYLFVEYKRA 39 (117)
Q Consensus 15 N~lf~i~G~~li~~G~w~~~~~~~~ 39 (117)
-.+..+.|++.++.|.|-+.+.++.
T Consensus 60 g~fii~~gil~~a~g~~r~~~~~~a 84 (120)
T COG2149 60 GVFLILVGILLAALGALRWQRVERA 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888876654443
No 21
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=26.67 E-value=65 Score=18.78 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038963 82 YLFIGVGVVLFVISCVGCIGATT 104 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~ 104 (117)
++...+|+..+..++.|.|...+
T Consensus 34 ~~~~~~g~~ll~~g~~g~Cp~~~ 56 (66)
T PF11127_consen 34 WLLGFVGAMLLVTGITGFCPLYA 56 (66)
T ss_pred HHHHHHHHHHHHHHHHCcCHhHH
Confidence 57888999999999999988764
No 22
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.42 E-value=48 Score=23.72 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhheeEE
Q 038963 15 NFLLTIVGLAMVGYGIYLFV 34 (117)
Q Consensus 15 N~lf~i~G~~li~~G~w~~~ 34 (117)
|++..+...+++++|+|+..
T Consensus 4 ~l~~~i~~gvL~~~G~Ylll 23 (163)
T PRK07946 4 NLGLLVAIGVLTSAGVYLLL 23 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555544
No 23
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=25.19 E-value=68 Score=15.96 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhheeEEe
Q 038963 17 LLTIVGLAMVGYGIYLFVE 35 (117)
Q Consensus 17 lf~i~G~~li~~G~w~~~~ 35 (117)
.+.+.|+++++.+.|....
T Consensus 12 ~~~~~G~~l~~~~~~~~~~ 30 (34)
T TIGR01167 12 LLLLLGLLLLGLGGLLLRK 30 (34)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 4456677777777766544
No 24
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=24.84 E-value=1.2e+02 Score=15.87 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 038963 82 YLFIGVGVVLFVISCVGCIGATTR 105 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~e 105 (117)
++=+.+|.+++++.+-|.....++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 577889999999999998887754
No 25
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=24.32 E-value=1.1e+02 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 038963 82 YLFIGVGVVLFVISCVGCIGATTRNG 107 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~en~ 107 (117)
-.++++-.++.+++++|++|..-+..
T Consensus 15 G~LIAvvLLLsIl~~lt~~ai~~Qq~ 40 (66)
T PF13179_consen 15 GMLIAVVLLLSILAFLTYWAIKVQQE 40 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888899999999999999775543
No 26
>PF15471 TMEM171: Transmembrane protein family 171
Probab=24.30 E-value=61 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhheeE
Q 038963 12 KLLNFLLTIVGLAMVGYGIYLF 33 (117)
Q Consensus 12 ~~~N~lf~i~G~~li~~G~w~~ 33 (117)
.+|.|+|...|.++-.+|+|+-
T Consensus 112 LIFGFLFLTSGmLISvLGiWVP 133 (319)
T PF15471_consen 112 LIFGFLFLTSGMLISVLGIWVP 133 (319)
T ss_pred HHHHHHHHhhhhhhhhheeeec
Confidence 4568899999999999999985
No 27
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=23.85 E-value=1.4e+02 Score=23.60 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhheeEEecccccC
Q 038963 15 NFLLTIVGLAMVGYGIYLFVEYKRADN 41 (117)
Q Consensus 15 N~lf~i~G~~li~~G~w~~~~~~~~~~ 41 (117)
+.+++++|+.++..+...+.|+++-.+
T Consensus 2 e~~Y~l~Gl~~~~~a~~~~~Dk~np~R 28 (308)
T PF06166_consen 2 EIFYILIGLVFIITAVRSLRDKTNPKR 28 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 568899999999999999988765443
No 28
>PRK01844 hypothetical protein; Provisional
Probab=23.67 E-value=1.8e+02 Score=18.02 Aligned_cols=21 Identities=43% Similarity=0.376 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHhh
Q 038963 83 LFIGVGVVLFVISCV-GCIGAT 103 (117)
Q Consensus 83 ~li~~G~~~~~v~~~-Gc~Ga~ 103 (117)
+.|.++++.+++|.+ |.++|-
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544 666664
No 29
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.20 E-value=59 Score=19.29 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038963 82 YLFIGVGVVLFVISCVG 98 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~G 98 (117)
+..++.|++..++|+.+
T Consensus 42 ~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 42 IWYLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHHHhHHHHHHHHHhh
Confidence 45778888888888754
No 30
>PRK00523 hypothetical protein; Provisional
Probab=22.84 E-value=2e+02 Score=17.81 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhh
Q 038963 83 LFIGVGVVLFVISCV-GCIGATT 104 (117)
Q Consensus 83 ~li~~G~~~~~v~~~-Gc~Ga~~ 104 (117)
+.|.++++.+++|.+ |.+.|-|
T Consensus 6 l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555656554 6666643
No 31
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.69 E-value=88 Score=17.81 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 038963 83 LFIGVGVVLFVISCVGCIGATTR 105 (117)
Q Consensus 83 ~li~~G~~~~~v~~~Gc~Ga~~e 105 (117)
.....|..+++.|......+.++
T Consensus 24 ~~~i~g~~~i~~Gi~~l~~~~~~ 46 (72)
T PF03729_consen 24 LAIILGIWLIISGIFQLISAFRR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666666666666666653
No 32
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.43 E-value=1.3e+02 Score=22.17 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038963 81 IYLFIGVGVVLFVISCVGC 99 (117)
Q Consensus 81 ~~~li~~G~~~~~v~~~Gc 99 (117)
..+++.+|++.+++|.+|.
T Consensus 9 ~~vLLliG~~f~ligaIGL 27 (197)
T PRK12585 9 ISIMILIGGLLSILAAIGV 27 (197)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578888988888887774
No 33
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=21.04 E-value=1.7e+02 Score=16.26 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 038963 82 YLFIGVGVVLFVISCVGCIGATTRNG 107 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~Ga~~en~ 107 (117)
++++.++.++..++...+.=|.|..+
T Consensus 4 ~~lip~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 4 YILIPVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 56777777777777777777776553
No 34
>PRK01741 cell division protein ZipA; Provisional
Probab=20.72 E-value=53 Score=26.14 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=15.8
Q ss_pred HHHHHHHHHHH----HHHHhheeE-Eecccc
Q 038963 14 LNFLLTIVGLA----MVGYGIYLF-VEYKRA 39 (117)
Q Consensus 14 ~N~lf~i~G~~----li~~G~w~~-~~~~~~ 39 (117)
+|.++.|+|++ +++-|+|.. .+|+.|
T Consensus 3 Ln~iliILg~lal~~Lv~hgiWsnRrEKSqy 33 (332)
T PRK01741 3 LNTILIILGILALVALVAHGIWSNRREKSQY 33 (332)
T ss_pred ceehHHHHHHHHHHHHHHhhhhhhhhHHHHh
Confidence 35566555543 667899984 444444
No 35
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=20.41 E-value=2.6e+02 Score=18.24 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeEEecccc
Q 038963 9 CLLKLLNFLLTIVGLAMVGYGIYLFVEYKRA 39 (117)
Q Consensus 9 ~~L~~~N~lf~i~G~~li~~G~w~~~~~~~~ 39 (117)
.+.-+.+.+++++..+..++++|.+.+--..
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~aa~~ 33 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVDAARR 33 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455677888899999999999999875433
Done!