Query 038963
Match_columns 117
No_of_seqs 158 out of 1067
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2klu_A T-cell surface glycopro 16.1 89 0.003 18.3 2.0 18 84-101 11-28 (70)
2 1rh5_B Preprotein translocase 15.5 1.9E+02 0.0066 16.9 3.6 19 82-100 36-54 (74)
3 2ww9_B Protein transport prote 13.8 2.3E+02 0.0079 16.9 3.6 19 82-100 49-67 (80)
4 2ari_A Envelope polyprotein GP 10.0 94 0.0032 16.1 0.7 17 88-104 4-20 (39)
5 1y29_A Huwentoxin-X; A double- 10.0 23 0.0008 17.0 -1.5 10 99-108 18-27 (28)
6 3mp7_B Preprotein translocase 9.5 2.9E+02 0.0099 15.5 3.6 19 82-100 32-50 (61)
7 2wwb_B SEC61gamma, protein tra 9.0 2.8E+02 0.0095 15.9 2.6 19 82-100 35-53 (68)
8 1v54_M VIIIB, IX, cytochrome C 7.2 3.2E+02 0.011 14.5 2.2 18 84-101 14-31 (46)
9 2l9x_A Uncharacterized protein 6.3 1.5E+02 0.005 14.1 0.4 9 96-104 6-14 (30)
10 2pjv_A Envelope glycoprotein; 5.7 75 0.0026 15.7 -0.8 14 89-102 4-17 (31)
No 1
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=16.15 E-value=89 Score=18.29 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038963 84 FIGVGVVLFVISCVGCIG 101 (117)
Q Consensus 84 li~~G~~~~~v~~~Gc~G 101 (117)
+++.|...-++.+.|.|-
T Consensus 11 LivlGg~~~lll~~glcI 28 (70)
T 2klu_A 11 LIVLGGVAGLLLFIGLGI 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 367777776666666543
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=15.52 E-value=1.9e+02 Score=16.93 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038963 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 36 ~iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888864
No 3
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=13.77 E-value=2.3e+02 Score=16.92 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038963 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 49 ~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 49 KIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888889999875
No 4
>2ari_A Envelope polyprotein GP160; HIV, fusion, peptide, domain, membrane, micelle, viral protein; NMR {Human immunodeficiency virus 1} PDB: 2jnr_B
Probab=9.96 E-value=94 Score=16.13 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038963 88 GVVLFVISCVGCIGATT 104 (117)
Q Consensus 88 G~~~~~v~~~Gc~Ga~~ 104 (117)
|...++++|+|-.|+..
T Consensus 4 ~lg~~fLGfLgaaGstm 20 (39)
T 2ari_A 4 GIGALFLGFLGAAGSTM 20 (39)
T ss_dssp STHHHHHHHHHHHHHHH
T ss_pred eeehHHhhhhhhhhccc
Confidence 44556778888777654
No 5
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=9.96 E-value=23 Score=16.99 Aligned_cols=10 Identities=40% Similarity=1.096 Sum_probs=5.5
Q ss_pred HHHhhhcccc
Q 038963 99 CIGATTRNGC 108 (117)
Q Consensus 99 c~Ga~~en~~ 108 (117)
|||++..|+|
T Consensus 18 CCG~Cs~nkC 27 (28)
T 1y29_A 18 CCGVCSHNKC 27 (28)
T ss_dssp BSSCBSSSCB
T ss_pred cccccccCcc
Confidence 5555555554
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=9.49 E-value=2.9e+02 Score=15.46 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038963 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-++++|++|+.
T Consensus 32 ~iak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 32 RAAKITGLGIILIGLIGML 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888864
No 7
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=8.97 E-value=2.8e+02 Score=15.95 Aligned_cols=19 Identities=5% Similarity=0.291 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038963 82 YLFIGVGVVLFVISCVGCI 100 (117)
Q Consensus 82 ~~li~~G~~~~~v~~~Gc~ 100 (117)
-+.-++|+-+.++|++|+.
T Consensus 35 ~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 35 KIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788888889998875
No 8
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=7.21 E-value=3.2e+02 Score=14.53 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038963 84 FIGVGVVLFVISCVGCIG 101 (117)
Q Consensus 84 li~~G~~~~~v~~~Gc~G 101 (117)
=.++|..++++++++=-|
T Consensus 14 E~aigl~v~f~~~L~Pag 31 (46)
T 1v54_M 14 EQAIGLSVTFLSFLLPAG 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 345677888888876443
No 9
>2l9x_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTH; NMR {Bacillus cereus 95}
Probab=6.26 E-value=1.5e+02 Score=14.07 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=5.5
Q ss_pred HHHHHHhhh
Q 038963 96 CVGCIGATT 104 (117)
Q Consensus 96 ~~Gc~Ga~~ 104 (117)
.+||.|++-
T Consensus 6 vigcigscv 14 (30)
T 2l9x_A 6 VIGCIGSCV 14 (30)
T ss_dssp HHHHTTHHH
T ss_pred EEeeeeeEE
Confidence 357777664
No 10
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=5.74 E-value=75 Score=15.68 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 038963 89 VVLFVISCVGCIGA 102 (117)
Q Consensus 89 ~~~~~v~~~Gc~Ga 102 (117)
.-.++++|+|-.|+
T Consensus 4 lGa~FLGFLgaAGS 17 (31)
T 2pjv_A 4 IGALFLGFLGAAGS 17 (31)
T ss_dssp HHHHHHTHHHHTCC
T ss_pred hhhHHHHHhhcccc
Confidence 34455666665543
Done!