BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038964
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 57 FLFGLLTSETKYTNTYLLETFLRAMNRKNSL 87
FLF +L +T + L+ T+ + M+ KNSL
Sbjct: 268 FLFEMLVGDTPFYADSLVGTYSKIMDHKNSL 298
>pdb|4GEL|A Chain A, Crystal Structure Of Zucchini
pdb|4GEL|B Chain B, Crystal Structure Of Zucchini
Length = 220
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 68 YTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFL 106
+T+ +L ++ RA+ R +R+I +G+ + SK + L
Sbjct: 81 FTSLFLADSIKRALQRGVIIRIISDGEMVYSKGSQISML 119
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 57 FLFGLLTSETKYTNTYLLETFLRAMNRKNSL 87
FL+ +L +T + L+ T+ + MN KNSL
Sbjct: 267 FLYEMLVGDTPFYADSLVGTYSKIMNHKNSL 297
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 57 FLFGLLTSETKYTNTYLLETFLRAMNRKNSL 87
FL+ +L +T + L+ T+ + MN KNSL
Sbjct: 262 FLYEMLVGDTPFYADSLVGTYSKIMNHKNSL 292
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 57 FLFGLLTSETKYTNTYLLETFLRAMNRKNSL 87
FL+ +L +T + L+ T+ + MN KNSL
Sbjct: 267 FLYEMLVGDTPFYADSLVGTYSKIMNHKNSL 297
>pdb|4GEM|A Chain A, Crystal Structure Of Zucchini (K171a)
pdb|4GEM|B Chain B, Crystal Structure Of Zucchini (K171a)
Length = 220
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 68 YTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFL 106
+T+ +L ++ RA+ R +R+I +G+ + SK + L
Sbjct: 81 FTSLFLADSIKRALQRGVIIRIISDGEMVYSKGSQISML 119
>pdb|4GEN|A Chain A, Crystal Structure Of Zucchini (Monomer)
Length = 169
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 68 YTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFL 106
+T+ +L ++ RA+ R +R+I +G+ + SK + L
Sbjct: 33 FTSLFLADSIKRALQRGVIIRIISDGEXVYSKGSQISXL 71
>pdb|4H4A|A Chain A, Crystal Structure Of The C-Terminal Domain Of Drosophila
Melanogaster Zucchini
Length = 169
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 68 YTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFL 106
+T+ +L ++ RA+ R +R+I +G+ + SK + L
Sbjct: 30 FTSLFLADSIKRALQRGVIIRIISDGEXVYSKGSQISXL 68
>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
Length = 352
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 43 VVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMA 102
+ VG +H I+ +G T Y N ++E L+A + K +V+I G + + A A
Sbjct: 194 IFAVGSRKHCCDIALEYGA-TDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQA 252
Query: 103 TTFL 106
+
Sbjct: 253 VKMI 256
>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|B Chain B, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|C Chain C, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|D Chain D, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
Length = 360
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 43 VVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMA 102
+ VG +H I+ +G T Y N ++E L+A + K +V+I G + + A A
Sbjct: 194 IFAVGSRKHCCDIALEYGA-TDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQA 252
Query: 103 TTFL 106
+
Sbjct: 253 VKMI 256
>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
pdb|1Y9A|C Chain C, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
Length = 360
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 43 VVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMA 102
+ VG +H I+ +G T Y N ++E L+A + K +V+I G + + A A
Sbjct: 194 IFAVGSRKHCCDIALEYGA-TDIINYKNGDIVEQILKATDGKGVDKVVIAGGXVHTFAQA 252
Query: 103 TTFL 106
+
Sbjct: 253 VKMI 256
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 35 TNAYSKPFVVI--VGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIIN 92
T +S P + I +G+ + + +L + S ++L+T+ R NRKNSL + ++
Sbjct: 84 TTLFSDPVLEISDLGVQRFLVYQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLD 143
Query: 93 GDQ 95
+
Sbjct: 144 SSK 146
>pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 300
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 12 YDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVV-IVGINQHIETISFLFGLLTSETKYTN 70
YD S E+ DIP + + + V+ I IN+H TI L L + KY
Sbjct: 105 YDGASRFASEI-SDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKYAR 163
Query: 71 TYLLETFLRAMNR 83
T + + LR + R
Sbjct: 164 T--VNSLLRILTR 174
>pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate
Transcarbamoylase From The Extremely Thermophilic
Archaeon Sulfolobus Acidocaldarius
Length = 299
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 12 YDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVV-IVGINQHIETISFLFGLLTSETKYTN 70
YD S E+ DIP + + + V+ I IN+H TI L L + KY
Sbjct: 104 YDGASRFASEI-SDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKYAR 162
Query: 71 TYLLETFLRAMNR 83
T + + LR + R
Sbjct: 163 T--VNSLLRILTR 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,072,637
Number of Sequences: 62578
Number of extensions: 107150
Number of successful extensions: 203
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 15
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)