BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038964
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 10 FLYDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYT 69
F D ++++ FGD TFDTTY++N Y PF G+N H + I F + +ET+ +
Sbjct: 283 FWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEAS 342
Query: 70 NTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFLDSTHK 111
+L T+L AM+ + + + D ++ A+ F + H+
Sbjct: 343 FVWLFNTWLAAMSAHPPVSITTDHDAVIRAAIMHVFPGARHR 384
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12
PE=2 SV=1
Length = 788
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 23 FGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMN 82
FGD FDT+Y+ +YS PF I+G N H + + ++ E+K +L +T+LRAM+
Sbjct: 396 FGDSVVFDTSYRKGSYSVPFATIIGFNHHRQPVLLGCAMVADESKEAFLWLFQTWLRAMS 455
Query: 83 RKNSLRVIINGDQIMSKAMATTFLDSTHK 111
+ ++ + D + +A+ F + H+
Sbjct: 456 GRRPRSIVADQDLPIQQALVQVFPGAHHR 484
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
GN=FHY3 PE=1 SV=1
Length = 839
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 10 FLYDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYT 69
F D S N F D+ + DTTY N Y P + VG+NQH + + L++ E+ T
Sbjct: 268 FWVDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCALISDESAAT 327
Query: 70 NTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFLDSTH 110
++L+ET+LRA+ + +I D +M+ + F ++ H
Sbjct: 328 YSWLMETWLRAIGGQAPKVLITELDVVMNSIVPEIFPNTRH 368
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7
PE=2 SV=1
Length = 764
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 23 FGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMN 82
FGD FDT+Y+ YS PF +G N H + + L+ E+K ++L +T+LRAM+
Sbjct: 372 FGDAVVFDTSYRKGDYSVPFATFIGFNHHRQPVLLGGALVADESKEAFSWLFQTWLRAMS 431
Query: 83 RKNSLRVIINGDQIMSKAMATTFLDSTHK 111
+ ++ + D + +A+A F + H+
Sbjct: 432 GRRPRSMVADQDLPIQQAVAQVFPGTHHR 460
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 10 FLYDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYT 69
F D S V FGD T DT Y+ N + PF G+N H + I F L+ E+ +
Sbjct: 230 FWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESDTS 289
Query: 70 NTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTFLDSTH 110
+L +TFL AM + + ++ + D+ + A F + H
Sbjct: 290 FIWLFKTFLTAMRDQPPVSLVTDQDRAIQIAAGQVFPGARH 330
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4
PE=2 SV=2
Length = 732
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 10 FLYDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYT 69
F D + + + F D+ +F+T+Y + Y P V+ VG+N H++ + GLL +T YT
Sbjct: 196 FWVDAKGIEDYKSFSDVVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYT 255
Query: 70 NTYLLETFLRAM 81
+L++++L AM
Sbjct: 256 YVWLMQSWLVAM 267
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8
PE=2 SV=2
Length = 725
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 44/89 (49%)
Query: 23 FGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMN 82
FGD+ FDTT +NAY P V VGIN H +TI GLL ++ T +L +L M
Sbjct: 318 FGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQSFETYVWLFRAWLTCML 377
Query: 83 RKNSLRVIINGDQIMSKAMATTFLDSTHK 111
+ I + M A++ F + H+
Sbjct: 378 GRPPQIFITEQCKAMRTAVSEVFPRAHHR 406
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9
PE=2 SV=2
Length = 545
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 5 DWETYFLYDRGSLVNDEVFGDIPTFDTTYQTNA-YSKPFVVIVGINQHIETISFLFGLLT 63
D F D +N FGD FDTTY+ Y PF G N H + + F L+
Sbjct: 42 DCGNVFWADPTCRLNYTYFGDTLVFDTTYRRGKRYQVPFAAFTGFNHHGQPVLFGCALIL 101
Query: 64 SETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATTF 105
+E++ + +L +T+L+AM+ + + D+++ A++ F
Sbjct: 102 NESESSFAWLFQTWLQAMSAPPPPSITVEPDRLIQVAVSRVF 143
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
PE=2 SV=1
Length = 807
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 23 FGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMN 82
F D+ FDT Y N Y PF +G++ H + + L+ ++ T ++L T+L+A+
Sbjct: 216 FSDVVLFDTFYVRNGYRIPFAPFIGVSHHRQYVLLGCALIGEVSESTYSWLFRTWLKAVG 275
Query: 83 RKNSLRVIINGDQIMSKAMATTFLDSTH 110
+ +I + D+++S + F D H
Sbjct: 276 GQAPGVMITDQDKLLSDIVVEVFPDVRH 303
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 23 FGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMN 82
F D+ +FDTTY P + +G+N H + + L+ E+ T +L++T+LRAM
Sbjct: 272 FNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESMETFVWLIKTWLRAMG 331
Query: 83 RKNSLRVIINGDQIMSKAMATTFLDSTH 110
+ ++ + D+ + A++ ++ H
Sbjct: 332 GRAPKVILTDQDKFLMSAVSELLPNTRH 359
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 10 FLYDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYT 69
F D S V+ FGD+ D++Y + + P V G+N H +T G L ET +
Sbjct: 281 FWADAFSKVSCSYFGDVIFIDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMES 340
Query: 70 NTYLLETFLRAMNR 83
+LL+ +L M R
Sbjct: 341 YHWLLKVWLSVMKR 354
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11
PE=2 SV=1
Length = 680
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 16 SLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLE 75
S+ + E+FGD FDTT++ +A P + VG+N + F LL E + ++ L+
Sbjct: 267 SIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRSWSWALQ 326
Query: 76 TFLRAMNRKNSLRVIINGDQIMSKAMATTFLDSTH 110
F MN K ++ + + + +A+A + H
Sbjct: 327 AFTGFMNGKAPQTILTDHNMCLKEAIAGEMPATKH 361
>sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana
GN=FRS10 PE=2 SV=2
Length = 685
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 22 VFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAM 81
+FGD+ FDT+Y++ Y V GI+ + + + LL E+ + T+ L+TF+R M
Sbjct: 288 LFGDVVVFDTSYRSVPYGLLLGVFFGIDNNGKAMLLGCVLLQDESCRSFTWALQTFVRFM 347
Query: 82 NRKNSLRVIINGDQIMSKAMATTFLDSTH 110
++ ++ + D + A+ ++ H
Sbjct: 348 RGRHPQTILTDIDTGLKDAIGREMPNTNH 376
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 24 GDIPTFDTTYQTNAYSKPFVVIVGIN---QHIETISFLFGLLTSETKYTNTYLLETFLRA 80
G F ++ S P+++I+GI QHI IS GLLT+ + + + FLR
Sbjct: 99 GSFSEFRYLFKWLQKSLPYILILGIKLVMQHITGISLGIGLLTTFMYANKSIVNQVFLR- 157
Query: 81 MNRKNSLR 88
R + LR
Sbjct: 158 -ERSSKLR 164
>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2
Length = 4731
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 2 KRIDWETYFLYDRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGIN 49
K +D F+ SL N EVFG P D TYQ+N S I I
Sbjct: 4399 KTLDQYFEFIQSLPSLDNPEVFGLHPNADITYQSNTASDVLETITNIQ 4446
>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2
Length = 4490
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 7 ETYFLYDRG--SLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGIN 49
+ YF Y + SL N EVFG P D TYQ+N S I I
Sbjct: 4161 DQYFEYIQSLPSLDNPEVFGLHPNADITYQSNTASAVLETITNIQ 4205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,810,452
Number of Sequences: 539616
Number of extensions: 1308647
Number of successful extensions: 2738
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2722
Number of HSP's gapped (non-prelim): 17
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)