Query 038964
Match_columns 111
No_of_seqs 120 out of 587
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 93.6 0.38 1.3E-05 30.5 7.2 66 24-99 2-67 (152)
2 3hph_A Integrase, IN; protein- 90.2 1.2 4.2E-05 30.3 7.0 65 25-99 61-125 (219)
3 1c0m_A Protein (integrase); HI 87.8 3.4 0.00012 28.7 8.1 71 24-99 10-80 (238)
4 1cxq_A Avian sarcoma virus int 84.7 5.9 0.0002 25.4 7.9 71 24-99 11-81 (162)
5 3l3u_A POL polyprotein; DNA in 83.5 3 0.0001 26.7 5.7 64 24-97 9-72 (163)
6 1bco_A MUA domain II, bacterio 76.4 9.6 0.00033 27.8 6.9 73 22-97 14-94 (327)
7 2x78_A Integrase; viral protei 76.0 14 0.00048 24.3 7.8 70 24-99 13-83 (200)
8 3av9_A Integrase, IN; protein- 74.4 9.8 0.00033 25.0 6.1 67 22-98 27-93 (183)
9 3f9k_A Integrase; protein-prot 71.0 12 0.0004 25.1 5.9 64 24-97 59-122 (210)
10 1ex4_A Integrase; SH3-like dom 68.2 17 0.00059 24.9 6.4 65 25-99 10-74 (239)
11 2yhb_A QDE-2, post-transcripti 64.3 42 0.0014 26.0 8.4 82 26-107 159-272 (437)
12 1c6v_A Protein (SIV integrase) 61.7 26 0.0009 21.8 6.4 64 24-97 9-72 (164)
13 2yha_A Post-transcriptional ge 59.8 55 0.0019 24.8 8.5 81 26-107 159-272 (388)
14 2fcj_A Small toprim domain pro 59.0 12 0.00042 24.0 3.8 27 84-110 50-79 (119)
15 1k6y_A Integrase; HIV-1, domai 43.3 68 0.0023 21.1 6.3 65 23-97 57-121 (212)
16 3beg_B Splicing factor, argini 39.5 30 0.001 21.0 3.3 43 13-78 30-72 (115)
17 3gqe_A Non-structural protein 37.4 36 0.0012 22.9 3.6 37 73-109 126-162 (168)
18 2b3h_A Methionine aminopeptida 32.9 12 0.00042 27.7 0.7 49 53-103 179-227 (329)
19 1x4c_A Splicing factor, argini 29.9 29 0.00099 20.6 2.0 40 14-76 30-69 (108)
20 3oym_A PFV integrase, P42IN; p 28.4 1.7E+02 0.0058 21.2 7.9 71 24-99 125-195 (395)
21 3hot_A Transposable element ma 27.5 1.3E+02 0.0045 21.3 5.5 53 40-95 189-252 (345)
22 3cb6_A FACT complex subunit SP 25.3 26 0.0009 26.4 1.4 49 53-104 298-346 (444)
23 3mx6_A Methionine aminopeptida 24.9 22 0.00075 25.0 0.8 49 53-103 112-160 (262)
24 3kyj_B CHEY6 protein, putative 24.6 55 0.0019 19.7 2.7 23 83-105 11-33 (145)
25 3leq_A Uncharacterized protein 24.6 46 0.0016 21.0 2.3 17 67-83 2-18 (126)
26 1qxy_A Methionyl aminopeptidas 24.3 29 0.00098 24.1 1.3 49 53-103 107-156 (252)
27 1mus_A TN5 transposase; hairpi 24.2 1.8E+02 0.0062 22.8 6.0 60 38-97 122-193 (477)
28 3pzy_A MOG; ssgcid, seattle st 24.1 89 0.003 20.5 3.7 44 61-105 19-63 (164)
29 1o0x_A Methionine aminopeptida 23.5 21 0.0007 25.2 0.5 42 62-103 128-169 (262)
30 4f25_A Polyadenylate-binding p 23.5 54 0.0019 19.7 2.4 48 13-78 19-66 (115)
31 3biq_A FACT complex subunit SP 23.4 25 0.00084 26.9 0.9 49 53-104 305-354 (467)
32 3en2_A Probable primosomal rep 22.9 1.2E+02 0.0043 18.5 4.0 46 6-52 50-98 (101)
33 1chm_A Creatine amidinohydrola 22.5 33 0.0011 25.7 1.4 49 53-103 262-310 (401)
34 1di6_A MOGA, molybdenum cofact 22.4 1.6E+02 0.0056 19.9 5.0 44 61-104 15-61 (195)
35 1kp0_A Creatine amidinohydrola 22.1 34 0.0011 25.4 1.4 49 53-103 262-310 (402)
36 2gg2_A Methionine aminopeptida 21.5 21 0.00073 25.0 0.2 49 53-103 110-158 (263)
37 3ond_A Adenosylhomocysteinase; 21.0 52 0.0018 26.0 2.3 36 62-97 112-147 (488)
38 2nlw_A Eukaryotic translation 20.8 1.3E+02 0.0046 17.4 3.8 43 16-76 38-80 (105)
39 3s6b_A Methionine aminopeptida 20.7 23 0.00078 26.9 0.2 42 62-103 217-258 (368)
40 3h9u_A Adenosylhomocysteinase; 20.5 59 0.002 25.3 2.5 46 62-108 98-144 (436)
41 1j3w_A Giding PROTEIN-MGLB; gl 20.5 60 0.002 21.6 2.3 20 61-80 7-26 (163)
42 3tav_A Methionine aminopeptida 20.2 38 0.0013 24.2 1.3 44 62-105 146-193 (286)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=93.56 E-value=0.38 Score=30.51 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
+++..+|.|+..++ ..++-+|...+-. .+.. +.+++.+...-++..+....+ |++|.||+......
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQV-IPEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEE-eCCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 46788999988543 4556667666544 3443 456666666555555555444 99999999987754
No 2
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=90.16 E-value=1.2 Score=30.34 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=42.9
Q ss_pred CeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 25 DIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 25 dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
+++.+|.|+..++ ..++-+|...+-. .+. .+.+++.+...-++..+....+ |++|.||+......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~-~~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s 125 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAE-RVKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVA 125 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEE-EESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHS
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEE-EeCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhh
Confidence 6778999977554 4556667766654 333 3566666665555555555444 99999999988753
No 3
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=87.82 E-value=3.4 Score=28.69 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=46.1
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
++++.+|.||.....+. ...++-+|...+-.. |+.+ .+++.+...-+|+......+ .|++|.||+......
T Consensus 10 ~~~w~~D~~~~~~~~g~-~yl~~~iD~~Sr~i~-~~~~-~~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMAPR-SWLAVTVDTASSAIV-VTQH-GRVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGGCSS-CEEEEEEETTTCCEE-EEEE-SSCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHS
T ss_pred CCEEEEeeccccccCCC-EEEEEEEECCCCCEE-EEEc-cCCCHHHHHHHHHHHHHHhC--CCcEEEECCCCcccc
Confidence 46889999986654443 445666777665443 5544 36666666555555555444 488999999988743
No 4
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=84.72 E-value=5.9 Score=25.41 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=44.7
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
.+++.+|.||.....+. ....+.+|...+-. +|+.+ .+++.+...-+++...... ..|++|.||+......
T Consensus 11 ~~~~~~D~~~~~~~~g~-~yl~~~iD~~Sr~i-~~~~~-~~~~~~~v~~~l~~~~~~~--g~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAPR-SWLAVTVDTASSAI-VVTQH-GRVTSVAAQHHWATAIAVL--GRPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGGTTS-CEEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHH--CCCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccCCCC-EEEEEEEEcCCCeE-EEEEC-CCccHHHHHHHHHHHHHHH--CCCeEEEeCCchhhhh
Confidence 56889999986554444 44566777776644 34444 3555555444444444443 3588999999987743
No 5
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=83.48 E-value=3 Score=26.73 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIM 97 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~ 97 (111)
.+++.+|.||..++ ..++-+|...+-. .+.. +.+++.+...-++..+...++ +++|.||+....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f 72 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEV-IPAETGQETAYFLLKLAGRWP---VKTVHTDNGSNF 72 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEE-eCCCcHHHHHHHHHHHHHHcC---CcEEeecChHhh
Confidence 46788999998654 3556667766643 3443 456666666555555544443 589999998765
No 6
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=76.38 E-value=9.6 Score=27.80 Aligned_cols=73 Identities=5% Similarity=-0.173 Sum_probs=48.3
Q ss_pred hCCCeEEEecccccCC----CCC--ceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCce--EEEeeC
Q 038964 22 VFGDIPTFDTTYQTNA----YSK--PFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSL--RVIING 93 (111)
Q Consensus 22 ~f~dvv~~D~Ty~tn~----y~~--pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~--~iiTD~ 93 (111)
.-++++.+|.|+..-. .+. -....+-+|-..+. ++|+.+-..|+.++..-+|+...+..+ .|. .|.+|+
T Consensus 14 ~p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~-ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDn 90 (327)
T 1bco_A 14 DAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRK-ILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDN 90 (327)
T ss_dssp CTTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCC-EEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCC
T ss_pred CCCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCc-EEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeC
Confidence 5578999999975432 232 23345556766654 467777778888877666665555443 577 999999
Q ss_pred cHHH
Q 038964 94 DQIM 97 (111)
Q Consensus 94 d~a~ 97 (111)
-...
T Consensus 91 G~~f 94 (327)
T 1bco_A 91 TRGA 94 (327)
T ss_dssp TTST
T ss_pred chhh
Confidence 7543
No 7
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=75.98 E-value=14 Score=24.28 Aligned_cols=70 Identities=7% Similarity=-0.021 Sum_probs=43.0
Q ss_pred CCeEEEec-ccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 24 GDIPTFDT-TYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 24 ~dvv~~D~-Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
.+++.+|. ++.... +.-...++.+|...+-. +++.+ .+.+.+... +.+..+..-..|++|.||+......
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~---~~l~~~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATV---KSLNVLTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHH---HHHHHHTTTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHH---HHHHHHHHhCCCcEEEecCCcceeh
Confidence 46788997 555443 33455667777776544 34444 555554433 3344444446799999999987643
No 8
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=74.43 E-value=9.8 Score=25.01 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=40.4
Q ss_pred hCCCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHH
Q 038964 22 VFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMS 98 (111)
Q Consensus 22 ~f~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~ 98 (111)
.=++++.+|.|+..++| .++.+|...+-. ++. .+.+++.+...-++....... .+++|.||+.....
T Consensus 27 ~p~~~w~~D~~~~~g~~-----~l~~vD~~Sr~~-~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~ef~ 93 (183)
T 3av9_A 27 SSPGIWQLDCTHLEGKV-----ILVAVHVASGYI-EAE-VIPAETGQETAYFLLKLAGRW---PVKTVHTDNGSNFT 93 (183)
T ss_dssp CCTTEEEEEEEEETTEE-----EEEEEETTTTEE-EEE-EESSCCHHHHHHHHHHHHHHS---CCCEEECSSHHHHH
T ss_pred CCCCEEEEeccccCCcE-----EEEEEECCCCCE-EEE-EeCCccchHHHHHHHHHHHHc---CCcEEEecCchhcc
Confidence 34678899999884432 344457666654 444 445555555443333333333 35999999998774
No 9
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=71.03 E-value=12 Score=25.14 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=40.1
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIM 97 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~ 97 (111)
..++.+|.|+..++| .++-+|...+ ++.+. .+.+++.+...-++..+....+ +++|.||+....
T Consensus 59 ~~~w~~D~~~~~~~y-----~l~~vD~~sr-~~~~~-~~~~~~~~~~~~~l~~~~~~~g---~~~i~sDnG~~F 122 (210)
T 3f9k_A 59 LGTWQMDCTHLEGKI-----IIVAVHVASG-FIEAE-VIPQESGRQTALFLLKLASRWP---ITHLHTDNGANF 122 (210)
T ss_dssp TTEEEEEEEEETTEE-----EEEEEETTTT-EEEEE-EESSCCHHHHHHHHHHHHTTSC---CSEEEECCCTTT
T ss_pred CCeEeEeecccCCeE-----EEEEEEcCCC-cEEEE-EeCCcchHHHHHHHHHHHHHcC---CCEEEeCCCchh
Confidence 357789999886543 4566677766 34444 4555666666555444444333 456999998765
No 10
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=68.19 E-value=17 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=38.9
Q ss_pred CeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 25 DIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 25 dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
.++.+|.|+..++| .++.+|...+-. +++ .+.+++.....-++...... ..|++|.||+......
T Consensus 10 ~~w~~D~t~~~g~~-----~l~~vD~~Sr~i-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~i~sDnG~eF~s 74 (239)
T 1ex4_A 10 GIWQLDCTHLEGKV-----ILVAVHVASGYI-EAE-VIPAETGQETAYFLLKLAGR---WPVKTIHTDNGSNFTG 74 (239)
T ss_dssp GEEEEEEEEETTEE-----EEEEECTTTCCE-EEE-CCSSSSTTHHHHHHHHHHHH---SCCCEEEECCCHHHHC
T ss_pred CEEEEeccccCCeE-----EEEEEECCCCeE-EEE-EeCCCCHHHHHHHHHHHHHh---cCCcEEEecCcHHHHH
Confidence 47889999884332 344446665543 444 45556655554333333332 2479999999998853
No 11
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=64.27 E-value=42 Score=25.96 Aligned_cols=82 Identities=21% Similarity=0.163 Sum_probs=44.0
Q ss_pred eEEEecccccC------CCCCceeEEEEE--ccCCceEEEEeeecc---ccccchh----hHHHHHHHH--HhcCCCceE
Q 038964 26 IPTFDTTYQTN------AYSKPFVVIVGI--NQHIETISFLFGLLT---SETKYTN----TYLLETFLR--AMNRKNSLR 88 (111)
Q Consensus 26 vv~~D~Ty~tn------~y~~pl~~~~g~--n~~~~~~~~~~~ll~---~E~~es~----~W~l~~f~~--~~~~~~p~~ 88 (111)
+|.+|.|+..+ ..+.|-+..+.- |.+...+.-.+.+-. .|..+.+ .-+|+.|.+ ...+..|.-
T Consensus 159 iiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~r 238 (437)
T 2yhb_A 159 VVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPEN 238 (437)
T ss_dssp EEEEEECCCSCCCTTCCSTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGGTTCCCSE
T ss_pred EEEEEEeccccccCCCcCCCCCEEEEEEEecCCCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhhcCCCCce
Confidence 45589999872 334554433222 333333332222222 2233333 344555555 245678999
Q ss_pred EEeeCc---------------HHHHHHHHHhCCC
Q 038964 89 VIINGD---------------QIMSKAMATTFLD 107 (111)
Q Consensus 89 iiTD~d---------------~a~~~Ai~~vfP~ 107 (111)
||--|| ++|++|++++.|+
T Consensus 239 IiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~ 272 (437)
T 2yhb_A 239 ILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPA 272 (437)
T ss_dssp EEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCT
T ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 988776 3578888888664
No 12
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=61.69 E-value=26 Score=21.77 Aligned_cols=64 Identities=14% Similarity=0.035 Sum_probs=36.7
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIM 97 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~ 97 (111)
.+++.+|.++..++ ..++.+|...+-. ++. .+.+++.+...-++...... ..|++|.||+....
T Consensus 9 ~~~w~~D~~~~~g~-----~~l~~iD~~Sr~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~i~sDnG~~f 72 (164)
T 1c6v_A 9 LGTWQMDCTHLEGK-----IVIVAVHVASGFI-EAE-VIPQETGRQTALFLLKLAGR---WPITHLHTDNGANF 72 (164)
T ss_dssp TTEEEEEEEEETTE-----EEEEEECTTSCCE-EEE-ECSSCSHHHHHHHHHHHHTT---SCCCEEECCCCSST
T ss_pred CCEEEEeecccCCE-----EEEEEEEccCCEE-EEE-EcCCCchHHHHHHHHHHHHh---cCCCEEEeCCchhh
Confidence 45778999888322 2344477776643 344 34455555444333333322 24899999987654
No 13
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=59.76 E-value=55 Score=24.82 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=44.9
Q ss_pred eEEEecccccC------CCCCceeEEEEE--ccCCceEEEEeeeccc----cccch----hhHHHHHHHH--HhcCCCce
Q 038964 26 IPTFDTTYQTN------AYSKPFVVIVGI--NQHIETISFLFGLLTS----ETKYT----NTYLLETFLR--AMNRKNSL 87 (111)
Q Consensus 26 vv~~D~Ty~tn------~y~~pl~~~~g~--n~~~~~~~~~~~ll~~----E~~es----~~W~l~~f~~--~~~~~~p~ 87 (111)
+|.+|.|+..+ ..+.|-+..+.- |.+...+. |..-+.. |..+. +..+|+.|.+ ...+..|.
T Consensus 159 iiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~~~~~y~-~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~ 237 (388)
T 2yha_A 159 VVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWP-AMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPE 237 (388)
T ss_dssp EEEEEEECSCCCSSSSCCTTSCEEEEEEECCSTTCCCCC-EEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGGTTCCCS
T ss_pred EEEEEEecccccCCCCcCCCCCEEEEEEEEcCCCCCEEE-EEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 45589999872 344555433222 33333333 2222222 22233 3455566655 34567899
Q ss_pred EEEeeCc---------------HHHHHHHHHhCCC
Q 038964 88 RVIINGD---------------QIMSKAMATTFLD 107 (111)
Q Consensus 88 ~iiTD~d---------------~a~~~Ai~~vfP~ 107 (111)
-||--|| ++|++|++++.|+
T Consensus 238 rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~ 272 (388)
T 2yha_A 238 NILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPA 272 (388)
T ss_dssp EEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCT
T ss_pred eEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9988876 3667888887654
No 14
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=59.04 E-value=12 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCceEEEeeCcHH---HHHHHHHhCCCCCC
Q 038964 84 KNSLRVIINGDQI---MSKAMATTFLDSTH 110 (111)
Q Consensus 84 ~~p~~iiTD~d~a---~~~Ai~~vfP~~~H 110 (111)
...-.|+||.|.+ +++-|.+.+|++.|
T Consensus 50 ~r~VIi~TD~D~~GekIRk~i~~~lp~~~h 79 (119)
T 2fcj_A 50 GYDVYLLADADEAGEKLRRQFRRMFPEAEH 79 (119)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHCTTSEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHCCCCcE
Confidence 6777889999984 78999999999987
No 15
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=43.31 E-value=68 Score=21.08 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHH
Q 038964 23 FGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIM 97 (111)
Q Consensus 23 f~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~ 97 (111)
=.+++.+|.++..++| .++.+|...+-.. +. .+.+++.+...-++..+... ..+++|.||+....
T Consensus 57 p~~~w~~D~~~~~~~~-----~l~~vD~~Sr~~~-~~-~~~~~~~~~~~~~~~~~~~~---~~~~~i~sDnG~~f 121 (212)
T 1k6y_A 57 SPGIWQLDCTHLEGKV-----ILVAVHVASGYIE-AE-VIPAETGQETAYFLLKLAGR---WPVKTVHTDNGSNF 121 (212)
T ss_dssp CTTEEEEEEEEETTEE-----EEEEEETTTTEEE-EE-EESSCCHHHHHHHHHHHHHH---SCCCEEECCCSTTT
T ss_pred CCCeeeEEEecCCCeE-----EEEEEEccCCcEE-EE-EecCcchHHHHHHHHHHHHh---cCCeEEEcCCCccc
Confidence 3467889999873332 3444466655443 33 44555555544333333332 23599999998765
No 16
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=39.54 E-value=30 Score=20.97 Aligned_cols=43 Identities=16% Similarity=-0.005 Sum_probs=29.6
Q ss_pred chhchhhhhhCCCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHH
Q 038964 13 DRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFL 78 (111)
Q Consensus 13 ~~~~~~~~~~f~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~ 78 (111)
....+..|..||+|..++.-.. |+||+.=++.+.-.-+++.+-
T Consensus 30 ~~~l~~~F~~~G~v~~~~i~~~-----------------------g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 30 WQDLKDHMREAGDVCYADVYRD-----------------------GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp TTHHHHHHGGGSCEEEEEECTT-----------------------SEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEEecC-----------------------CEEEEEECCHHHHHHHHHHhC
Confidence 3445677889998876554211 788998888887777666554
No 17
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=37.43 E-value=36 Score=22.91 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCceEEEeeCcHHHHHHHHHhCCCCC
Q 038964 73 LLETFLRAMNRKNSLRVIINGDQIMSKAMATTFLDST 109 (111)
Q Consensus 73 ~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~vfP~~~ 109 (111)
.++.+++.+......++|...|+.+.+++++....-.
T Consensus 126 ~i~~~l~~~~~~~~~V~iv~fd~~~~~~~~~~~~~~~ 162 (168)
T 3gqe_A 126 SLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARRE 162 (168)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCCCeEEEEEcCHHHHHHHHHHHHhhh
Confidence 5677777777667789999999999999988765433
No 18
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Probab=32.88 E-value=12 Score=27.73 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=33.9
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
+|+.+|- ..+|..+-|+-.++....++....|-+-..|-+.++.+.+++
T Consensus 179 RT~~vG~--~~~~~~~l~~~v~~a~~~ai~~~kPG~~~~dI~~~~~~~~~~ 227 (329)
T 2b3h_A 179 ETFFVGE--VDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQA 227 (329)
T ss_dssp EEEECSS--CCHHHHHHHHHHHHHHHHHHHTCCTTCBTTHHHHHHHHHHHH
T ss_pred EEEEeCC--CCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 4555542 356666777777777777777777877778888877777665
No 19
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.94 E-value=29 Score=20.65 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=26.6
Q ss_pred hhchhhhhhCCCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHH
Q 038964 14 RGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLET 76 (111)
Q Consensus 14 ~~~~~~~~~f~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~ 76 (111)
...+..|..||+|..+..-.. |+||+.=++.+.-.-+++.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~-----------------------g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRD-----------------------GTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETT-----------------------TEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEeEEEEecC-----------------------CEEEEEECCHHHHHHHHHH
Confidence 345667889998875543211 7888888887776655553
No 20
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=28.41 E-value=1.7e+02 Score=21.16 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=39.2
Q ss_pred CCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHH
Q 038964 24 GDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSK 99 (111)
Q Consensus 24 ~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~ 99 (111)
..++.+|-+.---.-+.-...++.+|...+-. .+.. +.+.+.+...-++ .+.. .-..|++|+||+......
T Consensus 125 ~~~~~~D~~~~~~~~~g~~y~l~~vD~~sr~~-~~~~-~~~~~~~~~~~~l-~~~~--~~g~p~~i~sDnG~~f~s 195 (395)
T 3oym_A 125 FDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFT-WLYP-TKAPSTSATVKSL-NVLT--SIAIPKVIHSDQGAAFTS 195 (395)
T ss_dssp TSEEEEEEECCCSCBTTBCEEEEEEETTTCCE-EEEE-ESSSCHHHHHHHH-HHHT--TTCCCSEEEECSCHHHHS
T ss_pred ceEEEEEEecccCCCCCccEEEEEEecCCceE-EEEE-ecCCcHHHHHHHh-hHhh--ccCCceEEEeCCCCceec
Confidence 35777886642222233455566667666543 3333 3445544444444 2222 235689999999987753
No 21
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=27.55 E-value=1.3e+02 Score=21.30 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=29.8
Q ss_pred CceeEEEEEccCCceEEEEeeecc---ccccchhhHHHHHHHHHhcC--------CCceEEEeeCcH
Q 038964 40 KPFVVIVGINQHIETISFLFGLLT---SETKYTNTYLLETFLRAMNR--------KNSLRVIINGDQ 95 (111)
Q Consensus 40 ~pl~~~~g~n~~~~~~~~~~~ll~---~E~~es~~W~l~~f~~~~~~--------~~p~~iiTD~d~ 95 (111)
.-+....+++..| .++..++. .-+.+.|.-+|+.++..+.. ..+.+++.|...
T Consensus 189 ~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 189 KKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 3344445555555 34555665 34566666666666554321 235688999865
No 22
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Probab=25.32 E-value=26 Score=26.43 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=37.7
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHHh
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMATT 104 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~v 104 (111)
+|+.+| ..+|-.+-|.-.++....++..-.|-+-..|-+.+..+.+.+.
T Consensus 298 RT~~v~---~~~~~~~~y~~v~~a~~~~~~~~~pG~~~~~v~~~~~~~~~~~ 346 (444)
T 3cb6_A 298 RTYLFD---PDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAK 346 (444)
T ss_dssp EEEEES---CCHHHHHHHHHHHHHHHHHHHHCSTTCBHHHHHHHHHHHHHHH
T ss_pred EEEEec---CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHhh
Confidence 566665 4777788888888877777766678888888888888888775
No 23
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=24.85 E-value=22 Score=25.03 Aligned_cols=49 Identities=2% Similarity=-0.107 Sum_probs=32.2
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
+|+.+| =..+|-.+-|.-.++....++..-.|-+-..|-+.+..+.+++
T Consensus 112 RT~~vG--~~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~i~~~~~~~~~~ 160 (262)
T 3mx6_A 112 RMYYVG--DVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEK 160 (262)
T ss_dssp EEEECS--SCCHHHHHHHHHHHHHHHHHHHTCSTTCBHHHHHHHHHHHHHH
T ss_pred EEEEcC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 344443 3455666677777777766676667777777777777777665
No 24
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=24.63 E-value=55 Score=19.68 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=13.2
Q ss_pred CCCceEEEeeCcHHHHHHHHHhC
Q 038964 83 RKNSLRVIINGDQIMSKAMATTF 105 (111)
Q Consensus 83 ~~~p~~iiTD~d~a~~~Ai~~vf 105 (111)
++.|.++|.|-++.+...++..+
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L 33 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFI 33 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHH
Confidence 44555666666666655555544
No 25
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=24.56 E-value=46 Score=21.03 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=13.7
Q ss_pred cchhhHHHHHHHHHhcC
Q 038964 67 KYTNTYLLETFLRAMNR 83 (111)
Q Consensus 67 ~es~~W~l~~f~~~~~~ 83 (111)
.+.+.|+|+.|.+..++
T Consensus 2 ~~~l~~lL~~l~~~v~g 18 (126)
T 3leq_A 2 HSQLDQLLTGLVDRVAE 18 (126)
T ss_dssp CCHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHhcCCC
Confidence 46799999999986654
No 26
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A*
Probab=24.26 E-value=29 Score=24.10 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=31.4
Q ss_pred ceEEEEeeeccc-cccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 53 ETISFLFGLLTS-ETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 53 ~~~~~~~~ll~~-E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
+|+.+| =... |..+-|.-+++....++..-.|-+-..|-+.++.+.+++
T Consensus 107 RT~~vG--~~~~~~~~~~~~~~~~a~~~~i~~~kpG~~~~~i~~~~~~~~~~ 156 (252)
T 1qxy_A 107 ISFVVG--ESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQ 156 (252)
T ss_dssp EEEECS--CCSCTHHHHHHHHHHHHHHHHHTTCCTTCBTHHHHHHHHHHHHH
T ss_pred EEEEcC--CCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344443 2344 556667777777766666667777777777777776665
No 27
>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} SCOP: c.55.3.4 PDB: 1mur_A* 4dm0_A* 1mm8_A 1muh_A* 3ecp_A* 1b7e_A*
Probab=24.17 E-value=1.8e+02 Score=22.84 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=34.4
Q ss_pred CCCceeEEEEEcc-CCceEEEEeeecc--------ccccchhhHHHH--HHHHHhcCCC-ceEEEeeCcHHH
Q 038964 38 YSKPFVVIVGINQ-HIETISFLFGLLT--------SETKYTNTYLLE--TFLRAMNRKN-SLRVIINGDQIM 97 (111)
Q Consensus 38 y~~pl~~~~g~n~-~~~~~~~~~~ll~--------~E~~es~~W~l~--~f~~~~~~~~-p~~iiTD~d~a~ 97 (111)
.|+.+-....++. .+.++-+--.-+. -|..||+.|+-. .-.+..+... ..+.+-|+...+
T Consensus 122 ~G~~lHstLavtp~~g~pLGl~~~~~W~R~~~~~pieeKES~rWle~~~~~~~~~~~~~~rvV~V~DRE~Di 193 (477)
T 1mus_A 122 RGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADI 193 (477)
T ss_dssp EEEEEEEEEEEETTTCCEEEEEEEEEECCCSSGGGCSSCGGGHHHHHHHHHHHHHGGGGGGEEEEECGGGCC
T ss_pred cceEEEEEEEEcCCCCceeeeeeeeEeecccccCCcccchhHHHHHHHHHHHHhcCCCcceEEEEechhhhH
Confidence 4566667778887 6654332222221 456799999743 2222333333 567899998654
No 28
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.10 E-value=89 Score=20.54 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=30.6
Q ss_pred eccccccchhhHHHHHHHHHhcCC-CceEEEeeCcHHHHHHHHHhC
Q 038964 61 LLTSETKYTNTYLLETFLRAMNRK-NSLRVIINGDQIMSKAMATTF 105 (111)
Q Consensus 61 ll~~E~~es~~W~l~~f~~~~~~~-~p~~iiTD~d~a~~~Ai~~vf 105 (111)
++..+..++-...+..+++..+.. .-..++-|. .++.+|+++..
T Consensus 19 l~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 19 ASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp HHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 446677888888888888887653 455788999 99999988753
No 29
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=23.50 E-value=21 Score=25.22 Aligned_cols=42 Identities=7% Similarity=-0.032 Sum_probs=28.8
Q ss_pred ccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 62 LTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 62 l~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
..+|..+-|.-+++....++..-.|-+-..|-+.+..+.+++
T Consensus 128 ~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~v~~~~~~~~~~ 169 (262)
T 1o0x_A 128 TDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVES 169 (262)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTTSBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 455666667777777766666667777677777777776665
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=23.49 E-value=54 Score=19.69 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=31.9
Q ss_pred chhchhhhhhCCCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHHHH
Q 038964 13 DRGSLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLETFL 78 (111)
Q Consensus 13 ~~~~~~~~~~f~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~f~ 78 (111)
...-+..|..||+|..+..-. +. +. .-||||+.=++.++-.-+++.+-
T Consensus 19 e~~L~~~F~~~G~v~~v~i~~---------------d~-~~--~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 19 NKALYDTFSAFGNILSCKVVC---------------DE-NG--SKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp HHHHHHHHGGGSCEEEEEEEE---------------ET-TE--EEEEEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCEEEEEEee---------------cC-CC--CCceEEEEECCHHHHHHHHHHcC
Confidence 345567889999986543211 21 22 35889999999888877776553
No 31
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A*
Probab=23.43 E-value=25 Score=26.89 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=37.9
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcC-CCceEEEeeCcHHHHHHHHHh
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNR-KNSLRVIINGDQIMSKAMATT 104 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~-~~p~~iiTD~d~a~~~Ai~~v 104 (111)
+|+.+| ..+|-.+-|.-+++....++.. -.|-+-..|-+.+..+.+.+.
T Consensus 305 RT~~~g---~~~~~~~~~~~v~~a~~~~~~~~~~pG~~~~~v~~~~~~~~~~~ 354 (467)
T 3biq_A 305 RTFLID---PSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKT 354 (467)
T ss_dssp EEEEES---CCHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CCHHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHHHHh
Confidence 456665 4777888888888888877777 678888888888888887775
No 32
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=22.93 E-value=1.2e+02 Score=18.49 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=31.7
Q ss_pred eeEEEEec-hhchhhhhhCCCeEEEecccccCCC--CCceeEEEEEccCC
Q 038964 6 WETYFLYD-RGSLVNDEVFGDIPTFDTTYQTNAY--SKPFVVIVGINQHI 52 (111)
Q Consensus 6 l~~ifw~~-~~~~~~~~~f~dvv~~D~Ty~tn~y--~~pl~~~~g~n~~~ 52 (111)
|.-+.|.. ++....| .=|.-|.+++.-.+..| +.|.+++.|..+|.
T Consensus 50 i~vv~wGk~AE~~~~~-~kGs~V~VeGrL~trs~~s~~lvlhi~~~~~~~ 98 (101)
T 3en2_A 50 IEALGAGKMASVLDRI-APGTVLECVGFLARKHRSSKALVFHISGLEHHH 98 (101)
T ss_dssp EEEEEETHHHHHHTTS-CTTCEEEEEEEEEECC----CEEEEEEEEEEC-
T ss_pred EEEEEEhHHHHHHhhc-CCCCEEEEEEEEEeCcCCCCeeEEEEecccccc
Confidence 56677773 3333335 37999999998877665 66889999998875
No 33
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=22.51 E-value=33 Score=25.69 Aligned_cols=49 Identities=4% Similarity=-0.114 Sum_probs=33.9
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
+|+.+| =..+|-.+-|.-.++....++....|-+-..|-+.++.+.+++
T Consensus 262 RT~~~G--~~~~~~~~~y~~v~~a~~~~i~~~~pG~~~~~v~~~~~~~~~~ 310 (401)
T 1chm_A 262 RTLFLD--HCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLK 310 (401)
T ss_dssp EEEEES--CCCHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred EEEECC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 445543 4566777778888877777777667777777777777766665
No 34
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=22.39 E-value=1.6e+02 Score=19.89 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=28.3
Q ss_pred eccccccchhhHHHHHHHHHhcCC---CceEEEeeCcHHHHHHHHHh
Q 038964 61 LLTSETKYTNTYLLETFLRAMNRK---NSLRVIINGDQIMSKAMATT 104 (111)
Q Consensus 61 ll~~E~~es~~W~l~~f~~~~~~~---~p~~iiTD~d~a~~~Ai~~v 104 (111)
+...+..++-..++..+++..+.. .-..++-|.-..+.+|+++.
T Consensus 15 l~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a 61 (195)
T 1di6_A 15 ASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCEL 61 (195)
T ss_dssp -------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 455667788877788888877644 34578899988998888765
No 35
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=22.05 E-value=34 Score=25.43 Aligned_cols=49 Identities=4% Similarity=-0.144 Sum_probs=33.7
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
+|+.+| =..+|-.+-|.-.++....++....|-+-..|-+.+..+.+++
T Consensus 262 RT~~~G--~~~~~~~~~~~~v~~a~~~~~~~~~pG~~~~~i~~~~~~~~~~ 310 (402)
T 1kp0_A 262 RTLFLZ--ZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNBMYRZ 310 (402)
T ss_dssp EEEEES--CCCHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHH
T ss_pred EEEEcC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 455544 3566777777777777777766666777777777777777665
No 36
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ...
Probab=21.53 E-value=21 Score=25.04 Aligned_cols=49 Identities=8% Similarity=-0.119 Sum_probs=30.8
Q ss_pred ceEEEEeeeccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 53 ETISFLFGLLTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 53 ~~~~~~~~ll~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
+|+.+| =..+|..+-|.-.++....++..-.|-+-..|-+.++.+.+++
T Consensus 110 RT~~vG--~~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~v~~~~~~~~~~ 158 (263)
T 2gg2_A 110 KMFIVG--KPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEA 158 (263)
T ss_dssp EEEECS--SCCHHHHHHHHHHHHHHHHHHHHCSTTCBHHHHHHHHHHHHHH
T ss_pred EEEEcC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344443 3455666667777776666666666766667777777666654
No 37
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=20.97 E-value=52 Score=26.03 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=28.8
Q ss_pred ccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHH
Q 038964 62 LTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIM 97 (111)
Q Consensus 62 l~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~ 97 (111)
-..|+.|.|-|..++.+..-.+..|..|+=|.....
T Consensus 112 ~~ge~~~ey~~~~~~~l~~~~~~~p~~i~Ddggd~~ 147 (488)
T 3ond_A 112 WKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTT 147 (488)
T ss_dssp CTTCCHHHHHHHHHHHHCCCTTCCCSEEEESSSHHH
T ss_pred eCCCCHHHHHHHHHHHHhcccCCCCCEEEECchHHH
Confidence 578999999999999887645568988888886543
No 38
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=20.83 E-value=1.3e+02 Score=17.42 Aligned_cols=43 Identities=9% Similarity=-0.073 Sum_probs=26.9
Q ss_pred chhhhhhCCCeEEEecccccCCCCCceeEEEEEccCCceEEEEeeeccccccchhhHHHHH
Q 038964 16 SLVNDEVFGDIPTFDTTYQTNAYSKPFVVIVGINQHIETISFLFGLLTSETKYTNTYLLET 76 (111)
Q Consensus 16 ~~~~~~~f~dvv~~D~Ty~tn~y~~pl~~~~g~n~~~~~~~~~~~ll~~E~~es~~W~l~~ 76 (111)
-+..|..||.|..+..- + ..++ .-|+||+.=++.++-.-+++.
T Consensus 38 l~~~F~~~G~v~~v~i~-~---------------~~g~--~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 38 IHKIFSKFGKITNDFYP-E---------------EDGK--TKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp HHHHHGGGSCEEEEECC-C---------------BTTB--SCCEEEEEECSSSHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEee-C---------------CCCC--eeeEEEEEECCHHHHHHHHHH
Confidence 56678999998776433 1 1121 237788888887776555543
No 39
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum}
Probab=20.69 E-value=23 Score=26.91 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=27.1
Q ss_pred ccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHHHH
Q 038964 62 LTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAMAT 103 (111)
Q Consensus 62 l~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai~~ 103 (111)
...|..+-|.-.++....++..-.|-+-..|-+.++.+.+++
T Consensus 217 ~s~e~~~ly~~v~ea~~aai~~ikPG~~~~dI~~aa~~~i~~ 258 (368)
T 3s6b_A 217 VPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSK 258 (368)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCTTCBTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 344555566666666666666666777777777777766664
No 40
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=20.52 E-value=59 Score=25.33 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=31.4
Q ss_pred ccccccchhhHHHHHHH-HHhcCCCceEEEeeCcHHHHHHHHHhCCCC
Q 038964 62 LTSETKYTNTYLLETFL-RAMNRKNSLRVIINGDQIMSKAMATTFLDS 108 (111)
Q Consensus 62 l~~E~~es~~W~l~~f~-~~~~~~~p~~iiTD~d~a~~~Ai~~vfP~~ 108 (111)
-..|+.|.|-|.+++.+ ....+..|..|+-|... +..-+-+.+|+-
T Consensus 98 ~~ge~~~ey~~~~~~~l~~~~~~~~p~~ilDdGgd-l~~~~h~~~~~~ 144 (436)
T 3h9u_A 98 WKGETEEEYMWCMKQTLKGFSGDGYPNMLLDDGGD-LTNYVLDECKEL 144 (436)
T ss_dssp CTTCCHHHHHHHHHHTTSCBTTTBCCSEEEESSSH-HHHHHHHHC-CC
T ss_pred eCCCCHHHHHHHHHHHHHhcccCCCCceEeccccH-HHHHHHHHhHHH
Confidence 47899999999998877 54445688888766654 444455556643
No 41
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=20.51 E-value=60 Score=21.59 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=17.1
Q ss_pred eccccccchhhHHHHHHHHH
Q 038964 61 LLTSETKYTNTYLLETFLRA 80 (111)
Q Consensus 61 ll~~E~~es~~W~l~~f~~~ 80 (111)
.+..|..+.+.|+|+.+.+.
T Consensus 7 ~l~~e~~~~l~~lL~~L~~v 26 (163)
T 1j3w_A 7 VLYGAPYERAVEVLEETLRE 26 (163)
T ss_dssp CCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhcc
Confidence 46788889999999999973
No 42
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus}
Probab=20.23 E-value=38 Score=24.23 Aligned_cols=44 Identities=0% Similarity=-0.155 Sum_probs=31.6
Q ss_pred ccccccchhhHHHHHHHHHhcCCCceEEEeeCcHHHHHHH----HHhC
Q 038964 62 LTSETKYTNTYLLETFLRAMNRKNSLRVIINGDQIMSKAM----ATTF 105 (111)
Q Consensus 62 l~~E~~es~~W~l~~f~~~~~~~~p~~iiTD~d~a~~~Ai----~~vf 105 (111)
..+|-.+-|.-.++....++..-.|-+-..|-+.+..+.+ ++.+
T Consensus 146 ~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~i~~~~~~~~~~~~~~~~ 193 (286)
T 3tav_A 146 VIPSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFD 193 (286)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTTCBHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4455566677777776666766778888888888888888 6653
Done!