BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038968
         (206 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6MCW1|SURE_PARUW 5'-nucleotidase SurE OS=Protochlamydia amoebophila (strain UWE25)
           GN=surE PE=3 SV=1
          Length = 261

 Score = 31.6 bits (70), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 131 PLHIKSLDWENPDGIKCALETTPITNLSMPLNVGTDRRLFVVASNVTRS 179
           PLHI+ +DW N      ++  TP   + + LNV   +R  ++ S + R 
Sbjct: 54  PLHIEKVDWLNAQADVWSVNGTPADCVKLALNVVLPKRPQLIVSGINRG 102


>sp|Q06FN6|RPAL3_PELHO Putative DNA-directed RNA polymerase subunit alpha-like 3
           OS=Pelargonium hortorum GN=rpoAL3-A PE=5 SV=1
          Length = 365

 Score = 31.2 bits (69), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 104 RVLKTWSKWV-----EQNVDPNRTTVFFGSTSPLHIKSLDWENPDGIKCALETTPITNLS 158
            +LK + K +     E+ V             PL+  ++D E P GIK  +ET  I  ++
Sbjct: 90  EILKNFGKIILTGKLEEFVGKGPFVAILDVRGPLNAMAVDIELPPGIKVEIETQHIATIT 149

Query: 159 MPLNVGTDRRLFVVAS 174
            P+    + R+ +V+S
Sbjct: 150 EPIPFVVELRIELVSS 165


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,768,844
Number of Sequences: 539616
Number of extensions: 3215766
Number of successful extensions: 6465
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6462
Number of HSP's gapped (non-prelim): 3
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)