BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038973
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 45/250 (18%)
Query: 96 LSFDRPGYGESDPHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQ 155
++FD G G ++ T +T D L + L I V+G+SMGA+ + P+
Sbjct: 75 ITFDNRGIGATENAEGFTTQTMVADTAALIETLDIAPA-RVVGVSMGAFIAQELMVVAPE 133
Query: 156 RLAGASLV-----VPFVHYWWPCLPANLSREALQRLPVENQRTFRIAYYFPWLLNLWMS- 209
++ A L+ + ++ A L +Q P + R + + LN ++
Sbjct: 134 LVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLNDDVAV 193
Query: 210 QKWFPTLSIMSGNMDIFSPPDLEILKKLSESPSEGQEKILQQGIHESLYRDLKTGYAKWE 269
W S+ I S P L +L +P Q YR++
Sbjct: 194 GDWIAMFSMWP----IKSTPGLRC--QLDCAP---------QTNRLPAYRNIAAPV---- 234
Query: 270 FDPTDLINPFPDNEGSVHIWQGCEDRIIPSQINQFISEKLPWIQYHEVPDAGHLFIFERK 329
L+ F D D + P + + +++ LP +Y ++PDAGHL FER
Sbjct: 235 -----LVIGFAD------------DVVTPPYLGREVADALPNGRYLQIPDAGHLGFFERP 277
Query: 330 FCEAIIRALL 339
EA+ A+L
Sbjct: 278 --EAVNTAML 285
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 68 IIIHGF-GSSKDLNLPVSQELIEELKIYFLSFDRPGYGESD----PHPLRTVKTEACDVE 122
IIIHGF G S++ ++ QE + E+ + L D G+G+SD H L T V
Sbjct: 31 IIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVV 90
Query: 123 QLADKLQIGSKFYVIGISMGAYPV 146
A KL + Y+ G S G V
Sbjct: 91 DYAKKLDFVTDIYMAGHSQGGLSV 114
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 53 YREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQEL-IEELKIYFLSFDRPGYGESDPHPL 111
Y EAGV ++ ++++HG G S+ + + + L+ D+PGYG SD
Sbjct: 48 YHEAGVGNDQT---VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAE 104
Query: 112 RTV--KTEACDVEQLADKLQIGSKFYVIGISMGA 143
+ A ++ L D+L +G + ++G S+G
Sbjct: 105 HGQFNRYAAMALKGLFDQLGLG-RVPLVGNSLGG 137
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 47 DGRHVAYREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPGYGES 106
DG + +++ G K ++ HG+ D+ E + ++FDR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWLLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 107 D-PHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQ----RLAGAS 161
D P T A D+ QL + L + + ++G SMG V +YI + R+AG
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIARHGSARVAGLV 116
Query: 162 LV 163
L+
Sbjct: 117 LL 118
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 96 LSFDRPGYGESD-PHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIP 154
++FDR G+G SD P T A D+ QL + L + + ++G SMG V +YI
Sbjct: 50 IAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIA 105
Query: 155 Q----RLAGASLV 163
+ R+AG L+
Sbjct: 106 RHGSARVAGLVLL 118
>pdb|1T4K|A Chain A, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
pdb|1T4K|C Chain C, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
Length = 217
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 51 VAYREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFL--SFDRPGYG 104
+ RE+GVP G GS D L +S E+L IY+ S+D P +G
Sbjct: 57 ASTRESGVPDR--------FTGSGSGTDFTLTISSVQAEDLAIYYCKQSYDLPTFG 104
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 96 LSFDRPGYGESD-PHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIP 154
++FDR G+G SD P T A D+ QL + L + + ++G SMG V +YI
Sbjct: 50 IAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIA 105
Query: 155 Q----RLAGASLV 163
+ R+AG L+
Sbjct: 106 RHGSARVAGLVLL 118
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 47 DGRHVAYREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPGYGES 106
DG + +++ G K ++ HG+ D+ E + ++FDR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWPLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 107 D-PHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQ----RLAGAS 161
D P T A D+ QL + L + + ++G SMG V +YI + R+AG
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIARHGSARVAGLV 116
Query: 162 LV 163
L+
Sbjct: 117 LL 118
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 47 DGRHVAYREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPGYGES 106
DG + +++ G K ++ HG+ D+ E + ++FDR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWPLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 107 D-PHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQ----RLAGAS 161
D P T A D+ QL + L + + ++G SMG V +YI + R+AG
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDV---ARYIARHGSARVAGLV 116
Query: 162 LV 163
L+
Sbjct: 117 LL 118
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 53 YREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQEL-IEELKIYFLSFDRPGYGESDPHPL 111
Y EAGV ++ ++++HG G S+ + + + L+ D+PGYG SD
Sbjct: 28 YHEAGVGNDQT---VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAE 84
Query: 112 RTV--KTEACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQRLAGASLVVP 165
+ A ++ L D+L +G V G V L Y P R L+ P
Sbjct: 85 HGQFNRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDY-PARAGRLVLMGP 139
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 11/138 (7%)
Query: 60 KEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPGYGESDPHPLRTVKTEAC 119
K + N ++++HG+G + ++ + +EL ++ + D PG+G S ++ A
Sbjct: 9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV--DLPGFGRSRGFGALSLADXAE 66
Query: 120 DVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQRLAGASLVVP----FVHYWWPCLP 175
V Q Q K +G S+G P+R+ V WP +
Sbjct: 67 AVLQ-----QAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIK 121
Query: 176 ANLSREALQRLPVENQRT 193
++ Q+L + QRT
Sbjct: 122 PDVLAGFQQQLSDDQQRT 139
>pdb|3R0V|A Chain A, The Crystal Structure Of An AlphaBETA HYDROLASE FROM
SPHAEROBACTER Thermophilus Dsm 20745
Length = 262
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 43 IKLSDGRHVAYREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPG 102
+ SDG +A+ +G + ++++ G S++ P+++ L + + +DR G
Sbjct: 7 VPSSDGTPIAFERSG-----SGPPVVLVGGALSTRAGGAPLAERLAPHFTV--IXYDRRG 59
Query: 103 YGESDPHPLRTVKTEACDVEQLADKLQIGSKFYVIGISMGA 143
G+S P V+ E D+ + D +V G S GA
Sbjct: 60 RGDSGDTPPYAVEREIEDLAAIIDAAG--GAAFVFGXSSGA 98
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 60 KEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPGYGES 106
K + N ++++HG+G + ++ + +EL ++ + D PG+G S
Sbjct: 9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV--DLPGFGRS 53
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 43 IKLSDGRHVAYREAGVPKEEANHKIIIIHGFGSSKDLNLPVSQELIEELKIYFLSFDRPG 102
+ DG + + +G P + IHG G ++ P ++L + + L FD+ G
Sbjct: 19 LDTGDGHRIYWELSGNPN---GKPAVFIHG-GPGGGIS-PHHRQLFDPERYKVLLFDQRG 73
Query: 103 YGESDPHPLRTVKTE---ACDVEQLADKLQIGSKFYVIGISMGAYPVYGCLKYIPQRLA 158
G S PH T D+E+L + + ++ V G S G+ + P+R++
Sbjct: 74 CGRSRPHASLDNNTTWHLVADIERLREMAGV-EQWLVFGGSWGSTLALAYAQTHPERVS 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,012,267
Number of Sequences: 62578
Number of extensions: 480869
Number of successful extensions: 1212
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 23
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)