BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038974
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 2 LPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
LPPG F+PT+++ V YL K +G I ++ L + +PW+L A +
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQR--LPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 61 YFTHLRSRY-HSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVKT 115
+FT +Y + R A G+WK G + + G+ + +KK+L +Y + VKT
Sbjct: 73 FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKT 131
Query: 116 QWLM 119
W+M
Sbjct: 132 DWIM 135
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 2 LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
LPPG F PT+E+ V YL K +G+ I +I L + +PW L + A ++
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFDPWVLPNKAL-FGEKEW 76
Query: 61 YFTHLRSRYH--SEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
YF R R + R A G+WK G I+ +G + V +KK+L +Y K K
Sbjct: 77 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTK 135
Query: 115 TQWLM 119
T W+M
Sbjct: 136 TNWIM 140
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 2 LPPGVVFNPTEED-RVSYLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQM 60
LPPG F PT+E+ V YL K +G+ I +I L + +PW L + A ++
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFDPWVLPNKAL-FGEKEW 73
Query: 61 YFTHLRSRYH--SEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYY----KKDVK 114
YF R R + R A G+WK G I+ +G + V +KK+L +Y K K
Sbjct: 74 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTK 132
Query: 115 TQWLM 119
T W+M
Sbjct: 133 TNWIM 137
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 66 RSRYHSEMVYREAVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYKKDVKTQWL 118
RS Y +E+V E +C + G+ + D GG ++KD +W+
Sbjct: 142 RSAYGNELVANEEICAGYDTGGVDTCQGDSGGP---------MFRKDNADEWI 185
>pdb|1ZLQ|A Chain A, Crystallographic And Spectroscopic Evidence For High
Affinity Binding Of Fe Edta (h2o)- To The Periplasmic
Nickel Transporter Nika
pdb|1ZLQ|B Chain B, Crystallographic And Spectroscopic Evidence For High
Affinity Binding Of Fe Edta (h2o)- To The Periplasmic
Nickel Transporter Nika
pdb|3DP8|A Chain A, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Nickel Butane-1,2,4- Tricarboxylate Form)
pdb|3DP8|B Chain B, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Nickel Butane-1,2,4- Tricarboxylate Form)
pdb|3DP8|C Chain C, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Nickel Butane-1,2,4- Tricarboxylate Form)
pdb|3E3K|A Chain A, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Butane-1,2,4-Tricarboxylate Without Nickel Form)
pdb|3E3K|B Chain B, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Butane-1,2,4-Tricarboxylate Without Nickel Form)
pdb|3E3K|C Chain C, Structural Characterization Of A Putative Endogenous Metal
Chelator In The Periplasmic Nickel Transporter Nika
(Butane-1,2,4-Tricarboxylate Without Nickel Form)
pdb|3MVW|A Chain A, X-Ray Structure Of A "nika+iron Complex" Hybrid, Nika1
pdb|3MVW|B Chain B, X-Ray Structure Of A "nika+iron Complex" Hybrid, Nika1
pdb|3MVX|A Chain A, X-Ray Structure Of The Reduced Nika1 HYBRID, NIKA1-Red
pdb|3MVX|B Chain B, X-Ray Structure Of The Reduced Nika1 HYBRID, NIKA1-Red
pdb|3MVY|A Chain A, X-Ray Structure Of The Diatomic Oxo-Intermediate
Nika1-Int', Prior Hydroxylation
pdb|3MVY|B Chain B, X-Ray Structure Of The Diatomic Oxo-Intermediate
Nika1-Int', Prior Hydroxylation
pdb|3MVZ|A Chain A, X-Ray Structure Of The (Hydro)peroxo Intermediate
Nika1-Int", After Monohydroxylation Of The Iron Complex
pdb|3MVZ|B Chain B, X-Ray Structure Of The (Hydro)peroxo Intermediate
Nika1-Int", After Monohydroxylation Of The Iron Complex
pdb|3MW0|A Chain A, X-Ray Structure Of The Doubly Hydroxylated Iron
Complex-Nika Species, Nika1O2
pdb|3MW0|B Chain B, X-Ray Structure Of The Doubly Hydroxylated Iron
Complex-Nika Species, Nika1O2
pdb|3MZ9|A Chain A, X-Ray Structure Of Nika In Complex With Hbed
pdb|3MZ9|B Chain B, X-Ray Structure Of Nika In Complex With Hbed
pdb|4DCX|A Chain A, X-Ray Structure Of Nika In Complex With
Fe(1r,2r)-N,N'-Bis(2-
Pyridylmethyl)-N,N'-Dicarboxymethyl-1,
2-Cyclohexanediamine
pdb|4DCX|B Chain B, X-Ray Structure Of Nika In Complex With
Fe(1r,2r)-N,N'-Bis(2-
Pyridylmethyl)-N,N'-Dicarboxymethyl-1,
2-Cyclohexanediamine
pdb|4DCY|A Chain A, X-Ray Structure Of Nika In Complex With
Fe(1s,2s)-N,N-Kappa-Bis(2-
Pyridylmethyl)-N-Carboxymethyl-N-Kappa-Methyl-1,
2-Cyclohexanediamine
pdb|4DCY|B Chain B, X-Ray Structure Of Nika In Complex With
Fe(1s,2s)-N,N-Kappa-Bis(2-
Pyridylmethyl)-N-Carboxymethyl-N-Kappa-Methyl-1,
2-Cyclohexanediamine
pdb|4I8C|A Chain A, X-ray Structure Of Nika In Complex With Ni-(l-his)2
pdb|4I8C|B Chain B, X-ray Structure Of Nika In Complex With Ni-(l-his)2
pdb|4I8C|C Chain C, X-ray Structure Of Nika In Complex With Ni-(l-his)2
Length = 502
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 22 KVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVY 75
+V H D + D L + E E+L+ HD +Q + + +R H E VY
Sbjct: 412 RVPSHADFQAQQGLADKPLIDKEIGEVLA-THDETQRQALYRDILTRLHDEAVY 464
>pdb|1UIU|A Chain A, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Unliganded Form)
pdb|1UIU|B Chain B, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Unliganded Form)
pdb|1UIV|A Chain A, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Liganded Form)
pdb|1UIV|B Chain B, Crystal Structures Of The Liganded And Unliganded Nickel
Binding Protein Nika From Escherichia Coli (Nickel
Liganded Form)
Length = 502
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 22 KVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVY 75
+V H D + D L + E E+L+ HD +Q + + +R H E VY
Sbjct: 412 RVPSHADFQAQQGLADKPLIDKEIGEVLA-THDETQRQALYRDILTRLHDEAVY 464
>pdb|3MZB|A Chain A, X-Ray Structure Of Nika In Complex With The Doubly
Hydroxylated Iron Complex, 1-O2
pdb|3MZB|B Chain B, X-Ray Structure Of Nika In Complex With The Doubly
Hydroxylated Iron Complex, 1-O2
Length = 501
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 22 KVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVY 75
+V H D + D L + E E+L+ HD +Q + + +R H E VY
Sbjct: 412 RVPSHADFQAQQGLADKPLIDKEIGEVLA-THDETQRQALYRDILTRLHDEAVY 464
>pdb|2NOO|A Chain A, Crystal Structure Of Mutant Nika
Length = 502
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 22 KVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVY 75
+V H D + D L + E E+L+ HD +Q + + +R H E VY
Sbjct: 412 RVPSHADFQAQQGLADKPLIDKEIGEVLA-THDETQRQALYRDILTRLHDEAVY 464
>pdb|4DYY|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin
Variant Mic1
pdb|4DYZ|A Chain A, Crystal Structure Of The Apo Form Of Human H-ferritin
Variant Mic1
Length = 172
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 30 GGSYFIQDIQLCEHEPWE 47
GG F+QDIQ + + WE
Sbjct: 73 GGRIFLQDIQKADEDDWE 90
>pdb|4DZ0|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin
Variant Mic1 Labeled With A Dansyl Fluorophore
Length = 172
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 30 GGSYFIQDIQLCEHEPWE 47
GG F+QDIQ + + WE
Sbjct: 73 GGRIFLQDIQKADEDDWE 90
>pdb|4H4J|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacuni_02947)
From Bacteroides Uniformis Atcc 8492 At 1.15 A
Resolution
Length = 240
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 15 RVSYLIGKVSGHT-----------DGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMY 61
++ Y GK+ G+T +G + F+QD+ E LS+++ H Q+Y
Sbjct: 73 KIRYRDGKIDGYTSRLHYIADWINNGVRNGFLQDVTGAXSPDTERLSISYXSSHPQLY 130
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 5 GVVFNPTEEDRVSYLIGKVSGHTDGGGSYFIQDIQLCEHE 44
G FN E + L+G+++G++ +YFI D + E++
Sbjct: 225 GTPFNLAEGAALLTLVGRLTGYSPRWFTYFIGDAHIYENQ 264
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 20 IGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCH 57
+G+VS + +GG Y +Q I+ E + L +A DC H
Sbjct: 167 LGQVSDYFEGGQKY-LQYIKQTVEEDFSGLHIALDCAH 203
>pdb|3L6N|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Ind-7
Length = 219
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 29 GGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSRYHSEMVYREAVCGFWKNLGL 88
GG Y + L + L + + Q ++ R++ +V A G
Sbjct: 25 GGKEYSANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGD 84
Query: 89 SSYINDKGGKPVAVKKSLNYYKKDVKT 115
S+ N+KG K A K+ + KKD K
Sbjct: 85 LSFFNNKGIKTYATAKTNEFLKKDGKA 111
>pdb|3V89|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 904
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 63 THLRSRYHSEMVYREAVCGFW----------KNLGLSSYI---------NDKGGKPVAVK 103
TH +SRY E VY A W + +GL ++ +DK +P A
Sbjct: 391 THTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPSA-D 449
Query: 104 KSLNYYKKD 112
K +YYK D
Sbjct: 450 KPFSYYKSD 458
>pdb|3V8X|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 904
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 63 THLRSRYHSEMVYREAVCGFW----------KNLGLSSYI---------NDKGGKPVAVK 103
TH +SRY E VY A W + +GL ++ +DK +P A
Sbjct: 391 THTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPSA-D 449
Query: 104 KSLNYYKKD 112
K +YYK D
Sbjct: 450 KPFSYYKSD 458
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,544,989
Number of Sequences: 62578
Number of extensions: 177414
Number of successful extensions: 917
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 19
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)