Query 038974
Match_columns 134
No_of_seqs 104 out of 820
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.3E-51 2.2E-55 301.5 11.9 125 1-129 14-145 (174)
2 1ut7_A No apical meristem prot 100.0 2.3E-50 7.8E-55 298.0 11.7 124 1-128 16-146 (171)
3 1ldd_A APC2WHB, anaphase promo 70.3 2.6 8.8E-05 26.3 2.1 24 3-26 37-61 (74)
4 3dct_B Nuclear receptor coacti 52.2 6.5 0.00022 18.3 1.2 14 9-22 2-15 (21)
5 1cmb_A Met APO-repressor; DNA- 32.3 48 0.0016 21.3 3.3 37 9-52 50-88 (104)
6 3fyr_A Sporulation inhibitor S 30.4 35 0.0012 19.3 2.2 17 10-26 6-23 (48)
7 3nr5_A MAF1, repressor of RNA 23.4 18 0.0006 25.8 0.1 14 35-48 119-132 (164)
8 3g1g_A GAG polyprotein, capsid 22.9 51 0.0017 21.0 2.2 18 9-26 62-79 (87)
9 2c4b_A Barnase mcoeeti fusion; 22.7 1E+02 0.0034 21.4 3.8 32 11-47 4-38 (143)
10 3pp4_P B-lymphocyte antigen CD 22.4 33 0.0011 16.8 0.9 12 39-50 1-12 (25)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.3e-51 Score=301.50 Aligned_cols=125 Identities=31% Similarity=0.593 Sum_probs=112.3
Q ss_pred CCCCCceEcCChHHHHH-HHHHhHcCCCCCCCCCceEeccCCCCCCcccchhcccCCCccEEEEeeccc-cCCCC-ceee
Q 038974 1 MLPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSR-YHSEM-VYRE 77 (134)
Q Consensus 1 ~LP~G~rF~PtDeELi~-YL~~k~~g~~~~~~~~~I~~~Dvy~~~Pw~L~~~~~~~~~~~~yFF~~~~~-~~~g~-~~R~ 77 (134)
.|||||||+|||||||. ||++|+.+. +++..+|.++|||++|||+||+.+..++ .+||||+++.+ +++|. .+|+
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~--~~~~~~I~evDvy~~~Pw~Lp~~~~~g~-~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQ--RLPVPIIAEVDLYKFDPWDLPERALFGA-REWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTC--CCSSSCCEECCGGGSCGGGSGGGCSSCS-SEEEEEEECCC-----CCSCEE
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCC--CCCcCeeeecccccCCchhhhhhhccCC-ceEEEEeccccccCCCCCceee
Confidence 48999999999999999 999999999 8888999999999999999999887665 89999999998 89888 8999
Q ss_pred eccceeeecCCCceEeCCCCceEEEEEEEEEEe----cCCCCCeEEEEEEeCCCCC
Q 038974 78 AVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKTQWLMTCTHFCTITS 129 (134)
Q Consensus 78 ~~~G~Wk~~g~~~~i~~~~g~~iG~kk~~~fy~----~~~kt~W~M~Ey~l~~~~~ 129 (134)
+++|+||++|++++|.+ +|++||+||+|+||. ++.||+|+||||+|.++..
T Consensus 91 t~~G~WkatG~dk~I~~-~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~ 145 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGR 145 (174)
T ss_dssp ETTEEEEECSCCEEECC-SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-
T ss_pred cCCceEccCCCCcEEee-CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCC
Confidence 99999999999999987 589999999999998 5789999999999998754
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.3e-50 Score=298.00 Aligned_cols=124 Identities=34% Similarity=0.569 Sum_probs=111.2
Q ss_pred CCCCCceEcCChHHHHH-HHHHhHcCCCCCCCCCceEeccCCCCCCcccchhcccCCCccEEEEeeccc-cCCCC-ceee
Q 038974 1 MLPPGVVFNPTEEDRVS-YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLAHDCCHQQMYFTHLRSR-YHSEM-VYRE 77 (134)
Q Consensus 1 ~LP~G~rF~PtDeELi~-YL~~k~~g~~~~~~~~~I~~~Dvy~~~Pw~L~~~~~~~~~~~~yFF~~~~~-~~~g~-~~R~ 77 (134)
.|||||||+|||||||. ||++|+.+. +++..+|+++|||.+|||+||+.+..++ ++||||+++.+ +++|. .+|+
T Consensus 16 ~lPpGfRF~PTDeELv~~YL~~K~~g~--~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~-~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 16 SLPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDPWVLPNKALFGE-KEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp CCCTTEEECCCHHHHHHHTHHHHHTTC--CCSSCCSEECCGGGSCGGGHHHHSSSCS-SEEEEEEECCC-------CCEE
T ss_pred CCCCcceeCCChHHHHHHHHHHHhcCC--CCCCCeEeecccccCChhHhhchhhcCC-ccEEEEeccccccCCCCccccc
Confidence 48999999999999999 999999999 8888899999999999999999876655 89999999998 89888 8999
Q ss_pred eccceeeecCCCceEeCCCCceEEEEEEEEEEe----cCCCCCeEEEEEEeCCCC
Q 038974 78 AVCGFWKNLGLSSYINDKGGKPVAVKKSLNYYK----KDVKTQWLMTCTHFCTIT 128 (134)
Q Consensus 78 ~~~G~Wk~~g~~~~i~~~~g~~iG~kk~~~fy~----~~~kt~W~M~Ey~l~~~~ 128 (134)
+++|+||++|++++|.+ +|++||+||+|+||. ++.||+|+||||+|.+++
T Consensus 93 t~~G~Wk~tG~~k~I~~-~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 93 AGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS 146 (171)
T ss_dssp ETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred CCCCEEeccCCCceEEe-cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCc
Confidence 99999999999999997 579999999999999 578999999999999875
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=70.25 E-value=2.6 Score=26.26 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCCceEcC-ChHHHHHHHHHhHcCC
Q 038974 3 PPGVVFNP-TEEDRVSYLIGKVSGH 26 (134)
Q Consensus 3 P~G~rF~P-tDeELi~YL~~k~~g~ 26 (134)
|.|+.|.. |++||-.||-.++...
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~ 61 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEG 61 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCC
Confidence 67899998 9999999999999888
No 4
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=52.21 E-value=6.5 Score=18.30 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=10.7
Q ss_pred cCChHHHHHHHHHh
Q 038974 9 NPTEEDRVSYLIGK 22 (134)
Q Consensus 9 ~PtDeELi~YL~~k 22 (134)
.+.|.+|+.||..|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 36788999988755
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=32.31 E-value=48 Score=21.32 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=29.0
Q ss_pred cCChHHHHH--HHHHhHcCCCCCCCCCceEeccCCCCCCcccchhc
Q 038974 9 NPTEEDRVS--YLIGKVSGHTDGGGSYFIQDIQLCEHEPWELLSLA 52 (134)
Q Consensus 9 ~PtDeELi~--YL~~k~~g~~~~~~~~~I~~~Dvy~~~Pw~L~~~~ 52 (134)
|-|..||++ ||. -..|+ |+|. +.|+-...|.++|..+
T Consensus 50 HATNSELLCEAFLH-A~TGQ--PLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLH-AFTGQ--PLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHH-HHHCC--CCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHH-HhcCC--CCCC----chhhhhcCCccchHHH
Confidence 568889999 665 46789 8885 5788888899998865
No 6
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=30.43 E-value=35 Score=19.32 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.2
Q ss_pred CChHHHHH-HHHHhHcCC
Q 038974 10 PTEEDRVS-YLIGKVSGH 26 (134)
Q Consensus 10 PtDeELi~-YL~~k~~g~ 26 (134)
=||+.||. |.+.+-.+-
T Consensus 6 LSDe~LiesY~~A~el~L 23 (48)
T 3fyr_A 6 LSDELLIESYFKATEMNL 23 (48)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred hcHHHHHHHHHHHHHhCC
Confidence 48999999 998877665
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=23.39 E-value=18 Score=25.81 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=11.5
Q ss_pred eEeccCCCCCCccc
Q 038974 35 IQDIQLCEHEPWEL 48 (134)
Q Consensus 35 I~~~Dvy~~~Pw~L 48 (134)
+.++|||++.|..-
T Consensus 119 l~dC~IYsY~Pd~~ 132 (164)
T 3nr5_A 119 LAECDIYSYNPDLD 132 (164)
T ss_dssp GGGCEEEEECCCGG
T ss_pred ccCCeEEEEcCCCC
Confidence 67889999999843
No 8
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=22.94 E-value=51 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=12.7
Q ss_pred cCChHHHHHHHHHhHcCC
Q 038974 9 NPTEEDRVSYLIGKVSGH 26 (134)
Q Consensus 9 ~PtDeELi~YL~~k~~g~ 26 (134)
-|+.+|||.|+..|....
T Consensus 62 ~~~~~e~Ik~~l~~~~~~ 79 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTA 79 (87)
T ss_dssp CCSHHHHHHHHHHHHC--
T ss_pred CCChHHHHHHHHHHhhcC
Confidence 377899999887776665
No 9
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=22.73 E-value=1e+02 Score=21.40 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=19.2
Q ss_pred ChHHHHH-HHHHhHcCCCCCCCCCceEecc--CCCCCCcc
Q 038974 11 TEEDRVS-YLIGKVSGHTDGGGSYFIQDIQ--LCEHEPWE 47 (134)
Q Consensus 11 tDeELi~-YL~~k~~g~~~~~~~~~I~~~D--vy~~~Pw~ 47 (134)
|+.+-|. ||.. .. .||+.+|.-.. --+-+|.+
T Consensus 4 t~~~~V~~yl~~---~~--~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YH--KLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HS--SCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hC--cCCcccccHHHHHHcCCCCCc
Confidence 4455555 9887 23 47888776653 34556643
No 10
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=22.43 E-value=33 Score=16.77 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=7.9
Q ss_pred cCCCCCCcccch
Q 038974 39 QLCEHEPWELLS 50 (134)
Q Consensus 39 Dvy~~~Pw~L~~ 50 (134)
|||.++|..-.+
T Consensus 1 nIynCE~a~pse 12 (25)
T 3pp4_P 1 NIYNCEPANPSE 12 (26)
T ss_dssp -CCCCSCSSGGG
T ss_pred CccccccCCccc
Confidence 689999865444
Done!