BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038975
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XIN0|LHW_ARATH Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1
Length = 650
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 135/198 (68%), Gaps = 15/198 (7%)
Query: 201 SQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKEL 260
SQ+ W++ ++S+ E + + + ++KR +PGE+ RPRPKDRQ IQDR+KEL
Sbjct: 419 SQISSWVEQAHSLKREGSPRMVNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKEL 478
Query: 261 RDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGG 320
R+IIPNGAKCSID LL+ TIKHM+FL+++++ +DK+K+ E K++ ++
Sbjct: 479 REIIPNGAKCSIDALLERTIKHMLFLQNVSKHSDKLKQTGESKIMKED------------ 526
Query: 321 HSGGGCATWACEVEGPTLSCPIIVQDLSTPRQMLIEMVCEDRGFFLEITDMIRGFGLNIW 380
GG ATWA EV ++ CPI+V+D++ PR +EM+CE RGFFLEI D IR GL I
Sbjct: 527 ---GGGATWAFEVGSKSMVCPIVVEDINPPRIFQVEMLCEQRGFFLEIADWIRSLGLTIL 583
Query: 381 KGVMERREDKIWARFIVE 398
KGV+E R DKIWARF VE
Sbjct: 584 KGVIETRVDKIWARFTVE 601
>sp|Q7XJU0|LHWL2_ARATH Transcription factor bHLH157 OS=Arabidopsis thaliana GN=BHLH157
PE=2 SV=1
Length = 527
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 165/285 (57%), Gaps = 52/285 (18%)
Query: 114 PCKGLFSELRLEELLRSSTNPSTIAKCSLEDQFFSPKRRKLESSSSNGNEVQRIKLPCSA 173
P KGLFSEL + L ++T S++ KRRKL++SS++ + +
Sbjct: 266 PPKGLFSEL-ISSSLSNNTCSSSLTNVQEYSGVNQSKRRKLDTSSAHSSSL--------- 315
Query: 174 GSISLVQDVHNKQNTNNLVWKKDVLPKSQVGLWIDDSYSINAENAVAVSPQKPEKHMKLS 233
++ V +S LWIDD + +++ + +KP + +
Sbjct: 316 -----------------FPQEETVTSRS---LWIDD----DERSSIGGNWKKPHEE-GVK 350
Query: 234 KKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCA 293
KKRA+ GES RPRPKDRQ IQDR+KELR +IPNGAKCSID LLDLTIKHM+F++S+ + A
Sbjct: 351 KKRAKAGESRRPRPKDRQMIQDRIKELRGMIPNGAKCSIDTLLDLTIKHMVFMQSLAKYA 410
Query: 294 DKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTPRQM 353
+++K+ E KL+ KE E TWA EV + CPI+V++L+ +M
Sbjct: 411 ERLKQPYESKLV-KEKE----------------RTWALEVGEEGVVCPIMVEELNREGEM 453
Query: 354 LIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
IEMVCE+R FLEI ++RG GL I KGVME R+ +IWA FIV+
Sbjct: 454 QIEMVCEEREEFLEIGQVVRGLGLKILKGVMETRKGQIWAHFIVQ 498
>sp|P0C7P8|LHWL1_ARATH Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444
PE=2 SV=1
Length = 734
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 6/168 (3%)
Query: 231 KLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSIT 290
K +KKRA+PGES+RPRP+DRQ IQDR+KELR+++PNG+KCSID LL+ TIKHM+FL+S++
Sbjct: 546 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIKHMLFLQSVS 605
Query: 291 QCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTP 350
Q ADK+ ++ K+ K+ + ++ G ++WA E+ G C I+V++L
Sbjct: 606 QHADKLTKSASSKMQHKDTGTLGISSTEQG------SSWAVEIGGHLQVCSIMVENLDKE 659
Query: 351 RQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
MLIEM+CE+ FLEI ++IR L I +G E++ +K W F+VE
Sbjct: 660 GVMLIEMLCEECSHFLEIANVIRSLELIILRGTTEKQGEKTWICFVVE 707
>sp|Q58G01|LHWL3_ARATH Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155
PE=2 SV=1
Length = 720
Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 13/168 (7%)
Query: 231 KLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSIT 290
K +KKRA+PGES+RPRP+DRQ IQDR+KELR+++PNG+KCSID LL+ TIKHM+FL+++T
Sbjct: 538 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMLFLQNVT 597
Query: 291 QCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACEVEGPTLSCPIIVQDLSTP 350
+ A+K+ ++ K+ KE G G CA EV G IIV++L+
Sbjct: 598 KHAEKLSKSANEKMQQKET----------GMQGSSCAV---EVGGHLQVSSIIVENLNKQ 644
Query: 351 RQMLIEMVCEDRGFFLEITDMIRGFGLNIWKGVMERREDKIWARFIVE 398
+LIEM+CE+ G FLEI ++IR L I +G E + +K W F+ E
Sbjct: 645 GMVLIEMLCEECGHFLEIANVIRSLDLVILRGFTETQGEKTWICFVTE 692
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 226 PEKHMKLS-KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTI 280
P K + L+ K RA G +T P+ K R++I +RL+ L++++PNG K I +L+ +
Sbjct: 256 PSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAV 315
Query: 281 KHMIFLK 287
++ FL+
Sbjct: 316 HYVKFLQ 322
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLK 287
K RA G +T P+ K R++I +RLK L++++PNG K I +L+ + ++ FL+
Sbjct: 166 KTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 210 SYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRP----KDRQQIQDRLKELRDIIP 265
S S VA PQ +K RAR G++T P R++I +R+K L++++P
Sbjct: 119 SASTATGGTVAAPPQS------RTKIRARRGQATDPHSIAERLRRERIAERMKALQELVP 172
Query: 266 NGAKCSIDCLLDLTIKHMIFLK 287
NG K +LD I ++ FL+
Sbjct: 173 NGNKTDKASMLDEIIDYVKFLQ 194
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLK 287
K RA G +T P+ K R++I +RL+ L+ ++PNG K I +L+ ++++ FL+
Sbjct: 236 KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQ 293
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 218 AVAVSP--QKPEKH-MKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDC 274
A+ V P +KP K K + R P + R+++ R LR ++PN +K
Sbjct: 389 AIVVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKAS 448
Query: 275 LLDLTIKHMIFLKSITQCADKIKEAEEPKLIDKENEVVLKDNSTGGHSGGGCATWACE 332
LL I ++ LKS Q A+ KE + KL E G++G GC + A E
Sbjct: 449 LLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKE---------GNNGKGCGSRAKE 497
>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139
PE=4 SV=1
Length = 223
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLK 287
K +A G ++ P+ K R++I DRLK L+ ++PNG K I +L+ + ++ FL+
Sbjct: 131 KAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLK 287
K RAR G++T P R++I +R+K L++++PNG K +LD I ++ FL+
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQ 186
>sp|Q9C707|BH083_ARATH Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2
SV=1
Length = 298
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 27/80 (33%)
Query: 235 KRARPGESTRPR------------------PKD---------RQQIQDRLKELRDIIPNG 267
KR+ GEST+P PKD R++I +RLK L++++PNG
Sbjct: 172 KRSHTGESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNG 231
Query: 268 AKCSIDCLLDLTIKHMIFLK 287
K + +L+ I ++ FL+
Sbjct: 232 TKVDLVTMLEKAISYVKFLQ 251
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2
SV=1
Length = 297
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 201 SQVGLWIDDSYSINAENAVAVSPQKPEKHMKLSKKRARPGESTRPRP----KDRQQIQDR 256
SQ GL + S + V QKP + RAR G++T P R++I +R
Sbjct: 75 SQEGLQPQGTVSTTSAPVVR---QKP-------RVRARRGQATDPHSIAERLRRERIAER 124
Query: 257 LKELRDIIPNGAKCSIDCLLDLTIKHMIFLK 287
+K L++++PN K +LD I+++ FL+
Sbjct: 125 MKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155
>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana
GN=BHLH86 PE=4 SV=2
Length = 307
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 14/74 (18%)
Query: 228 KHMKLSKK-------RARPGESTRPR-PKD------RQQIQDRLKELRDIIPNGAKCSID 273
++ +LSKK + +P +T P+ P+ R++I +RLK L++++PNG K +
Sbjct: 184 ENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLV 243
Query: 274 CLLDLTIKHMIFLK 287
+L+ I ++ FL+
Sbjct: 244 TMLEKAIGYVKFLQ 257
>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128
PE=1 SV=1
Length = 362
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAK-CSIDCLLDLTIKHMIFLKS 288
K RA+ G +T PR + R +I +LK+L+D++PN K S +LDL ++H+ L+
Sbjct: 282 KIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQH 341
Query: 289 ITQCADKIKE 298
Q K +E
Sbjct: 342 QLQNLKKDQE 351
>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140
PE=4 SV=1
Length = 912
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 250 RQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKS 288
R +I DR K L+ ++P GAK +LD I ++ FLK+
Sbjct: 56 RHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKA 94
>sp|Q8L5W7|PIF6_ARATH Transcription factor PIF6 OS=Arabidopsis thaliana GN=PIF6 PE=1 SV=1
Length = 363
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 223 PQKPEKHMKLSKKRARPGES-TRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIK 281
PQ P + K KR R E+ P R I +++ L++++PN K + +LD I
Sbjct: 173 PQVPARTRKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAIN 232
Query: 282 HMIFLK 287
+M L+
Sbjct: 233 YMTNLQ 238
>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica
GN=LAX PE=1 SV=1
Length = 215
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 250 RQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKS 288
R +I DR + LR ++P G+K +L+ I ++ FLK+
Sbjct: 53 RHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKA 91
>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129
PE=2 SV=2
Length = 297
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGAK-CSIDCLLDLTIKHMIFLK 287
+ RA+ G +T PR + R +I +LK+L++++PN K S +LDL ++H+ L+
Sbjct: 232 RARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQ 290
>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3
Length = 198
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 248 KDRQQIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLK 287
+ R++I ++++ L+ I+P GAK +LD I++ FLK
Sbjct: 129 RRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168
>sp|P46014|P2C70_ARATH Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2
Length = 581
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 82 DYIKPAVSGDHSAISTHMSECITELDVGSASGPCKGLFSELRLEELLRSSTNPSTIAKCS 141
D +P +S D + I SE E D+ A GL E PS+ S
Sbjct: 51 DLQRPLISDDGNLIQGQTSEVTREYDLEGACYQNDGLLHSSLTEGRFYKQRLPSSSPHFS 110
Query: 142 LEDQFFSPKRRKLESSSSNGNEVQRIKLPCSAGSISLVQ--DVHNKQNTN 189
+ F + S N Q +KLP GS++ VQ D N +N N
Sbjct: 111 QGESFV---LEVISEPSDNALVGQTLKLPAEKGSLAEVQTYDWQNNRNEN 157
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 219 VAVSPQKPEKHMKLSKKRARPGESTRPRPKDRQQIQDRLKELRDIIPNGAKCSIDCLLDL 278
VAV + ++ K + R P + R+++ R LR ++PN +K LL
Sbjct: 430 VAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGD 489
Query: 279 TIKHMIFLKSITQCADKIKEAEEPKLIDKEN--EVVL-----KDNSTGGHSGGGCAT 328
I ++ LKS K+ + E KL K EV L K +++GG C++
Sbjct: 490 AIAYINELKS------KVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSS 540
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,357,194
Number of Sequences: 539616
Number of extensions: 6359687
Number of successful extensions: 17027
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 16997
Number of HSP's gapped (non-prelim): 48
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)