Query 038975
Match_columns 398
No_of_seqs 81 out of 83
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 08:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 98.5 1.5E-07 5.2E-12 78.9 5.6 62 234-295 19-88 (118)
2 1am9_A Srebp-1A, protein (ster 98.4 2.5E-07 8.6E-12 73.0 5.3 46 248-293 16-62 (82)
3 1a0a_A BHLH, protein (phosphat 98.3 2.8E-07 9.7E-12 70.1 3.7 43 248-290 12-61 (63)
4 4h10_B Circadian locomoter out 98.3 6.5E-07 2.2E-11 70.4 5.5 46 248-293 18-64 (71)
5 4h10_A ARYL hydrocarbon recept 98.2 6.4E-07 2.2E-11 70.3 2.6 43 247-289 18-64 (73)
6 1an4_A Protein (upstream stimu 98.1 1.1E-06 3.8E-11 65.9 2.6 43 248-290 15-63 (65)
7 1nkp_B MAX protein, MYC proto- 97.9 1.2E-05 4.2E-10 62.7 5.4 45 248-292 12-58 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 97.7 3.6E-05 1.2E-09 61.7 5.5 45 248-292 16-63 (88)
9 1hlo_A Protein (transcription 97.7 3.3E-05 1.1E-09 60.2 5.0 46 248-293 22-69 (80)
10 3u5v_A Protein MAX, transcript 97.7 2.5E-05 8.4E-10 61.7 3.5 46 248-293 15-64 (76)
11 4f3l_A Mclock, circadian locom 97.2 0.00026 8.8E-09 65.9 4.7 46 246-291 20-66 (361)
12 4ath_A MITF, microphthalmia-as 97.0 0.0012 4E-08 53.8 5.8 45 250-294 4-52 (83)
13 1nlw_A MAD protein, MAX dimeri 96.9 0.0017 5.7E-08 51.4 5.8 46 248-293 11-59 (80)
14 1mdy_A Protein (MYOD BHLH doma 96.8 0.0015 5.2E-08 50.6 5.1 43 248-290 22-66 (68)
15 2ql2_B Neurod1, neurogenic dif 96.4 0.0047 1.6E-07 46.7 5.4 44 248-291 12-58 (60)
16 4f3l_B BMAL1B; BHLH, PAS, circ 96.4 0.0025 8.5E-08 60.3 4.4 44 247-290 22-69 (387)
17 2lfh_A DNA-binding protein inh 95.7 0.017 5.8E-07 45.5 5.6 42 247-288 23-67 (68)
18 4aya_A DNA-binding protein inh 88.2 0.58 2E-05 38.9 4.8 44 249-292 36-82 (97)
19 2c2a_A Sensor histidine kinase 40.9 4.9 0.00017 33.9 -0.4 22 373-394 211-232 (258)
20 4fpp_A Phosphotransferase; fou 39.6 4 0.00014 35.5 -1.2 22 373-394 212-233 (247)
21 1m5a_B Insulin B chain; alpha 36.0 10 0.00034 26.0 0.6 12 355-366 15-26 (30)
22 3ehh_A Sensor kinase (YOCF pro 30.8 7.8 0.00027 31.6 -0.8 22 373-394 181-202 (218)
23 3dhx_A Methionine import ATP-b 27.8 35 0.0012 27.1 2.6 31 368-398 38-70 (106)
24 1ysr_A Sensor-type histidine k 27.7 11 0.00038 29.1 -0.3 22 373-394 112-133 (150)
25 1bxd_A ENVZ(290-450), protein 27.2 14 0.00046 29.0 0.1 22 373-394 113-134 (161)
26 3ehg_A Sensor kinase (YOCF pro 26.6 10 0.00035 29.1 -0.7 22 373-394 91-112 (128)
27 2dhy_A CUE domain-containing p 24.5 82 0.0028 24.2 4.0 48 240-287 4-59 (67)
28 1id0_A PHOQ histidine kinase; 24.5 14 0.00046 28.4 -0.4 22 373-394 108-129 (152)
29 2qsw_A Methionine import ATP-b 24.4 45 0.0015 25.9 2.6 31 368-398 40-72 (100)
30 3jz3_A Sensor protein QSEC; he 23.6 11 0.00037 30.4 -1.1 22 372-393 179-200 (222)
31 1r62_A Nitrogen regulation pro 23.3 12 0.00039 28.8 -1.0 22 373-394 123-144 (160)
32 3ced_A Methionine import ATP-b 22.0 57 0.0019 25.7 2.8 31 368-398 37-69 (98)
33 3zxo_A Redox sensor histidine 22.0 12 0.00042 28.0 -1.0 22 373-394 90-111 (129)
34 2qrr_A Methionine import ATP-b 21.7 54 0.0018 25.5 2.6 31 368-398 40-72 (101)
35 3zxq_A Hypoxia sensor histidin 20.2 11 0.00036 28.3 -1.8 22 373-394 86-107 (124)
36 3hlu_A Uncharacterized protein 20.1 75 0.0026 25.1 3.1 31 366-396 19-52 (96)
37 3d9j_A RNA-binding protein 16; 20.1 95 0.0032 26.1 3.9 44 252-295 6-49 (145)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.47 E-value=1.5e-07 Score=78.95 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=43.7
Q ss_pred cccCCCCCCCCCCc----hhhhHHHHHHHHHhhcCCCCc----ccchhhhHHHHHHHHHHHHHhhhhhhh
Q 038975 234 KKRARPGESTRPRP----KDRQQIQDRLKELRDIIPNGA----KCSIDCLLDLTIKHMIFLKSITQCADK 295 (398)
Q Consensus 234 kkRar~Ge~~rPrp----kdRq~IqdR~KeLr~lVPNG~----KcsId~lLe~tI~~m~FLq~~~k~adK 295 (398)
+.+++.+....++. +||..|++++.+|+.|||+.. |.+-.++|++||.||++||.+.+....
T Consensus 19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555664 999999999999999999875 568999999999999999998776543
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.42 E-value=2.5e-07 Score=73.00 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHhhcCCCC-cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPNG-AKCSIDCLLDLTIKHMIFLKSITQCA 293 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPNG-~KcsId~lLe~tI~~m~FLq~~~k~a 293 (398)
+||+.|++++.+|+.|||++ .|.|-.++|++||.|+++||.+.+..
T Consensus 16 rRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 16 RYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999997 89999999999999999999887753
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.33 E-value=2.8e-07 Score=70.14 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHhhcCCCC-------cccchhhhHHHHHHHHHHHHHhh
Q 038975 248 KDRQQIQDRLKELRDIIPNG-------AKCSIDCLLDLTIKHMIFLKSIT 290 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPNG-------~KcsId~lLe~tI~~m~FLq~~~ 290 (398)
+||.+|++++++|+.|||+. .|-+..++|+.||+|+++||.+.
T Consensus 12 ~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 12 ARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999964 56679999999999999999754
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.32 E-value=6.5e-07 Score=70.41 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHhhcCCCC-cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPNG-AKCSIDCLLDLTIKHMIFLKSITQCA 293 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPNG-~KcsId~lLe~tI~~m~FLq~~~k~a 293 (398)
+||.+||++|.+|+.|||.+ .|.+-.++|+.||.|+++||..+...
T Consensus 18 rRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 18 KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 79999999999999999964 59999999999999999999887653
No 5
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.18 E-value=6.4e-07 Score=70.33 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=39.4
Q ss_pred chhhhHHHHHHHHHhhcCCCC----cccchhhhHHHHHHHHHHHHHh
Q 038975 247 PKDRQQIQDRLKELRDIIPNG----AKCSIDCLLDLTIKHMIFLKSI 289 (398)
Q Consensus 247 pkdRq~IqdR~KeLr~lVPNG----~KcsId~lLe~tI~~m~FLq~~ 289 (398)
.+||++||+++.+|+.|||.. .|.|-.++|+.||.||+.||..
T Consensus 18 RrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 18 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 389999999999999999975 7999999999999999999853
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.11 E-value=1.1e-06 Score=65.89 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHhhcCCCCc------ccchhhhHHHHHHHHHHHHHhh
Q 038975 248 KDRQQIQDRLKELRDIIPNGA------KCSIDCLLDLTIKHMIFLKSIT 290 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPNG~------KcsId~lLe~tI~~m~FLq~~~ 290 (398)
+||+.|++++.+|+.|||+.. |.|-.++|+.||.|+++||...
T Consensus 15 ~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 15 RRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999876 6799999999999999999754
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.92 E-value=1.2e-05 Score=62.73 Aligned_cols=45 Identities=29% Similarity=0.531 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSITQC 292 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~k~ 292 (398)
+||+.|++++.+|+.+||. +.|.|-.++|..||.|+++||...+.
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997 68999999999999999999976654
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.74 E-value=3.6e-05 Score=61.74 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHHhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKSITQC 292 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~~~k~ 292 (398)
+||..|++++..||.+||+ +.|.|-.++|.+||.|+.+||...+.
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997 46999999999999999999988664
No 9
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.73 E-value=3.3e-05 Score=60.18 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSITQCA 293 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~k~a 293 (398)
+||+.|++++.+||.+||. +.|.|-.++|..||.|+++||...+..
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997 479999999999999999999876653
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=97.67 E-value=2.5e-05 Score=61.66 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHhhcCCC---Cccc-chhhhHHHHHHHHHHHHHhhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPN---GAKC-SIDCLLDLTIKHMIFLKSITQCA 293 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPN---G~Kc-sId~lLe~tI~~m~FLq~~~k~a 293 (398)
+||+.|++++.+||.+||+ +.|. +-.+.|.+||.|+.+||.+.+..
T Consensus 15 ~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 15 KRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999996 5666 67789999999999999988753
No 11
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.20 E-value=0.00026 Score=65.94 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=41.6
Q ss_pred CchhhhHHHHHHHHHhhcCC-CCcccchhhhHHHHHHHHHHHHHhhh
Q 038975 246 RPKDRQQIQDRLKELRDIIP-NGAKCSIDCLLDLTIKHMIFLKSITQ 291 (398)
Q Consensus 246 rpkdRq~IqdR~KeLr~lVP-NG~KcsId~lLe~tI~~m~FLq~~~k 291 (398)
-.+||++||++|.+|+.||| +..|-|-.++|..||.|++-+|.+..
T Consensus 20 e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 20 EKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 35999999999999999999 66799999999999999999987754
No 12
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=96.96 E-value=0.0012 Score=53.79 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhhcCCC----CcccchhhhHHHHHHHHHHHHHhhhhhh
Q 038975 250 RQQIQDRLKELRDIIPN----GAKCSIDCLLDLTIKHMIFLKSITQCAD 294 (398)
Q Consensus 250 Rq~IqdR~KeLr~lVPN----G~KcsId~lLe~tI~~m~FLq~~~k~ad 294 (398)
|--|++|||||..|||. ..|-+-.++|-+||.|+.+||....++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~ 52 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 52 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999995 2567899999999999999998665543
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=96.87 E-value=0.0017 Score=51.42 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHhhcCCCC---cccchhhhHHHHHHHHHHHHHhhhhh
Q 038975 248 KDRQQIQDRLKELRDIIPNG---AKCSIDCLLDLTIKHMIFLKSITQCA 293 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPNG---~KcsId~lLe~tI~~m~FLq~~~k~a 293 (398)
+||..|++++-.||.+||++ .|.|-..+|.+|+.|+.+||...+..
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l 59 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999965 67888999999999999999887644
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=96.81 E-value=0.0015 Score=50.56 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHhhcCCC--CcccchhhhHHHHHHHHHHHHHhh
Q 038975 248 KDRQQIQDRLKELRDIIPN--GAKCSIDCLLDLTIKHMIFLKSIT 290 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPN--G~KcsId~lLe~tI~~m~FLq~~~ 290 (398)
+|++.|++....||.+||. +.|-|--..|..||.|+.|||.+.
T Consensus 22 ~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 22 RRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999997 578999999999999999999764
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=96.43 E-value=0.0047 Score=46.67 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHHhhh
Q 038975 248 KDRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKSITQ 291 (398)
Q Consensus 248 kdRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~~~k 291 (398)
+|++.|++....||.+||. +.|.|--..|..||.|+.+||.+..
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999986 5588999999999999999998754
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=96.37 E-value=0.0025 Score=60.28 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=40.0
Q ss_pred chhhhHHHHHHHHHhhcCC----CCcccchhhhHHHHHHHHHHHHHhh
Q 038975 247 PKDRQQIQDRLKELRDIIP----NGAKCSIDCLLDLTIKHMIFLKSIT 290 (398)
Q Consensus 247 pkdRq~IqdR~KeLr~lVP----NG~KcsId~lLe~tI~~m~FLq~~~ 290 (398)
.+||.+||++|.||+.||| ...|-|--++|..||.|++.||...
T Consensus 22 k~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 22 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred hcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 4899999999999999999 7889999999999999999998543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.70 E-value=0.017 Score=45.55 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=37.1
Q ss_pred chhhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHH
Q 038975 247 PKDRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKS 288 (398)
Q Consensus 247 pkdRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~ 288 (398)
.+|++.+|+.+.+||++||+ +.|.|--..|..||.|+.+||.
T Consensus 23 R~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 23 LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp SCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 35778999999999999974 5788989999999999999995
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=88.23 E-value=0.58 Score=38.94 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHhhcCCC---CcccchhhhHHHHHHHHHHHHHhhhh
Q 038975 249 DRQQIQDRLKELRDIIPN---GAKCSIDCLLDLTIKHMIFLKSITQC 292 (398)
Q Consensus 249 dRq~IqdR~KeLr~lVPN---G~KcsId~lLe~tI~~m~FLq~~~k~ 292 (398)
|-+.+|+-...||++||. +.|-|--..|..||.|+.+||.+...
T Consensus 36 Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 36 LLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 556799999999999985 56888888899999999999988765
No 19
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=40.92 E-value=4.9 Score=33.94 Aligned_cols=22 Identities=36% Similarity=0.743 Sum_probs=20.1
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|-+++.++++||..
T Consensus 211 ~GLGL~i~~~iv~~~gG~i~v~ 232 (258)
T 2c2a_A 211 TGLGLAITKEIVELHGGRIWVE 232 (258)
T ss_dssp CCCTHHHHHHHHHHTTCEEEEE
T ss_pred cchHHHHHHHHHHHcCCEEEEE
Confidence 4899999999999999999864
No 20
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=39.63 E-value=4 Score=35.46 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=20.3
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|.++|.++++||..
T Consensus 212 ~GLGLai~~~iv~~hGG~i~v~ 233 (247)
T 4fpp_A 212 PWVQAAYLNALVRAAGGQIAVE 233 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccHHHHHHHHHHHHcCCEEEEE
Confidence 4899999999999999999974
No 21
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=36.03 E-value=10 Score=25.99 Aligned_cols=12 Identities=50% Similarity=1.248 Sum_probs=9.8
Q ss_pred HhhhhhccchhH
Q 038975 355 IEMVCEDRGFFL 366 (398)
Q Consensus 355 iEMlCee~g~FL 366 (398)
..++|++||||.
T Consensus 15 L~~vCgdRGF~~ 26 (30)
T 1m5a_B 15 LYLVCGERGFFY 26 (30)
T ss_dssp HHHHHGGGCEEE
T ss_pred HHHHhccCcccc
Confidence 458899999983
No 22
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=30.76 E-value=7.8 Score=31.64 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.3
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|.+++.+++++|..
T Consensus 181 ~GlGL~~~~~~v~~~gG~i~~~ 202 (218)
T 3ehh_A 181 KGHGLLGMRERLEFANGSLHID 202 (218)
T ss_dssp --CHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHcCCEEEEe
Confidence 6999999999999999999863
No 23
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=27.77 E-value=35 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=24.8
Q ss_pred HHHhhhccc--ceeeehhhheeCCceEEEeeeC
Q 038975 368 ITDMIRGFG--LNIWKGVMERREDKIWARFIVE 398 (398)
Q Consensus 368 IAd~Irglg--LtILKGvmE~r~~k~Wa~F~VE 398 (398)
|++++|.+| .+||.|-++.=.+...-+++||
T Consensus 38 Is~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~ 70 (106)
T 3dhx_A 38 LSETARRFNVNNNIISAQMDYAGGVKFGIMLTE 70 (106)
T ss_dssp HHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEE
Confidence 567777666 6899999999888888887774
No 24
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=27.74 E-value=11 Score=29.07 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.2
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|-+++..++++|..
T Consensus 112 ~GlGL~i~~~~~~~~gG~i~~~ 133 (150)
T 1ysr_A 112 SGLGLALVAQQAQLHGGTASLE 133 (150)
T ss_dssp --CCCHHHHHHHHHTTCEEEEE
T ss_pred CCcCHHHHHHHHHHcCCEEEEe
Confidence 5899999999999999998864
No 25
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=27.23 E-value=14 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.4
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|-+++..++++|..
T Consensus 113 ~GlGL~i~~~~~~~~gG~i~~~ 134 (161)
T 1bxd_A 113 TGLGLAIVQRIVDNHNGMLELG 134 (161)
T ss_dssp CSCCCCTTHHHHHHHTSEEEEE
T ss_pred cccCHHHHHHHHHHcCCEEEEE
Confidence 5899999999999999988764
No 26
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=26.60 E-value=10 Score=29.08 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.9
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|..++.++++++..
T Consensus 91 ~GlGL~~~~~~~~~~gG~i~~~ 112 (128)
T 3ehg_A 91 KGHGLLGMRERLEFANGSLHID 112 (128)
T ss_dssp TTSHHHHHHHHHHHTTCEEEEE
T ss_pred CCccHHHHHHHHHHcCCEEEEE
Confidence 5899999999999999888753
No 27
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.55 E-value=82 Score=24.25 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=32.0
Q ss_pred CCCCCCCc-hhhhHHHHHHHHHhhcCCCCcccchhhhH-------HHHHHHHHHHH
Q 038975 240 GESTRPRP-KDRQQIQDRLKELRDIIPNGAKCSIDCLL-------DLTIKHMIFLK 287 (398)
Q Consensus 240 Ge~~rPrp-kdRq~IqdR~KeLr~lVPNG~KcsId~lL-------e~tI~~m~FLq 287 (398)
|.+.||-. ..+.-.++.++.|+++.|+=.+--|...| |.||+-++-|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 4 GSSGRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp SCCCCCCCCCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCcchhccCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 34444433 44556778899999999998877776665 45666665554
No 28
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=24.52 E-value=14 Score=28.43 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.2
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|-+++..++++|..
T Consensus 108 ~GlGL~i~~~~~~~~gG~i~~~ 129 (152)
T 1id0_A 108 QGVGLAVAREITEQYEGKIVAG 129 (152)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEE
T ss_pred cccCHHHHHHHHHHcCCEEEEE
Confidence 5899999999999999888864
No 29
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=24.42 E-value=45 Score=25.95 Aligned_cols=31 Identities=10% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHhhh--cccceeeehhhheeCCceEEEeeeC
Q 038975 368 ITDMIR--GFGLNIWKGVMERREDKIWARFIVE 398 (398)
Q Consensus 368 IAd~Ir--glgLtILKGvmE~r~~k~Wa~F~VE 398 (398)
|++++| ++.++||.|-++.-.+..--+++||
T Consensus 40 is~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~ 72 (100)
T 2qsw_A 40 ISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQ 72 (100)
T ss_dssp HHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEE
Confidence 566666 4567999999999877777777664
No 30
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=23.62 E-value=11 Score=30.41 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.1
Q ss_pred hhcccceeeehhhheeCCceEE
Q 038975 372 IRGFGLNIWKGVMERREDKIWA 393 (398)
Q Consensus 372 IrglgLtILKGvmE~r~~k~Wa 393 (398)
=.||||.|.|-+++..+++||.
T Consensus 179 g~GlGL~i~~~i~~~~gG~i~i 200 (222)
T 3jz3_A 179 GSGLGLSIVQRIAKLHGMNVEF 200 (222)
T ss_dssp ---CTHHHHHHHHHHTTCEEEC
T ss_pred cccccHHHHHHHHHHcCCEEEE
Confidence 3599999999999999999985
No 31
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=23.31 E-value=12 Score=28.76 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.8
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|-+++..++++|..
T Consensus 123 ~GlGL~i~~~~~~~~gG~l~i~ 144 (160)
T 1r62_A 123 TGLGLSIARNLIDQHSGKIEFT 144 (160)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEE
T ss_pred CccCHHHHHHHHHHCCCeEEEE
Confidence 6899999999999999988863
No 32
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=22.05 E-value=57 Score=25.67 Aligned_cols=31 Identities=6% Similarity=0.247 Sum_probs=23.9
Q ss_pred HHHhhh--cccceeeehhhheeCCceEEEeeeC
Q 038975 368 ITDMIR--GFGLNIWKGVMERREDKIWARFIVE 398 (398)
Q Consensus 368 IAd~Ir--glgLtILKGvmE~r~~k~Wa~F~VE 398 (398)
|++++| ++.++||.|-++.-.+..--+++||
T Consensus 37 Is~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~ 69 (98)
T 3ced_A 37 VSSLSTAYDIKINILEANIKNTKNGTVGFLVLH 69 (98)
T ss_dssp HHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEE
Confidence 677777 4567999999999877777777663
No 33
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=22.00 E-value=12 Score=28.03 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.0
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
.||||.|.|-+++..+++++..
T Consensus 90 ~GlGL~i~~~~~~~~gG~i~~~ 111 (129)
T 3zxo_A 90 TGSGLTNLRQRAEQAGGEFTLA 111 (129)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcCHHHHHHHHHHcCCEEEEe
Confidence 7999999999999988888754
No 34
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=21.74 E-value=54 Score=25.51 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=23.0
Q ss_pred HHHhhhcc--cceeeehhhheeCCceEEEeeeC
Q 038975 368 ITDMIRGF--GLNIWKGVMERREDKIWARFIVE 398 (398)
Q Consensus 368 IAd~Irgl--gLtILKGvmE~r~~k~Wa~F~VE 398 (398)
|++++|.+ ..+||.|-++.-.+..--+++||
T Consensus 40 is~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~ 72 (101)
T 2qrr_A 40 MSQISRKYNIDVSILSSDLDYAGGVKFGMMVAE 72 (101)
T ss_dssp HHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEE
Confidence 56666654 46899999999877777777664
No 35
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.15 E-value=11 Score=28.34 Aligned_cols=22 Identities=9% Similarity=0.047 Sum_probs=19.0
Q ss_pred hcccceeeehhhheeCCceEEE
Q 038975 373 RGFGLNIWKGVMERREDKIWAR 394 (398)
Q Consensus 373 rglgLtILKGvmE~r~~k~Wa~ 394 (398)
+||||.|.|-+++..+++++..
T Consensus 86 ~GlGL~~~~~~~~~~gG~i~~~ 107 (124)
T 3zxq_A 86 TESGLRNLRQRADDAGGEFTVE 107 (124)
T ss_dssp SHHHHHHHHHHHHHHTCEEEEE
T ss_pred cccCHHHHHHHHHHhCCEEEEE
Confidence 4999999999999998888764
No 36
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=20.10 E-value=75 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHhhh---cccceeeehhhheeCCceEEEee
Q 038975 366 LEITDMIR---GFGLNIWKGVMERREDKIWARFI 396 (398)
Q Consensus 366 LEIAd~Ir---glgLtILKGvmE~r~~k~Wa~F~ 396 (398)
-||++.|+ +.|.|+|+|.=-..+++-..-|+
T Consensus 19 eeI~~~I~~~l~rGvT~~~g~G~Ys~~~~~vl~~ 52 (96)
T 3hlu_A 19 KIIADRMLQELDLGVTMLQAVGAYKNNETEVIMC 52 (96)
T ss_dssp HHHHHHHHHHSCCCCEEEECEESSSSSCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEEEEcccCCCEEEEEE
Confidence 58888887 67999999975544444444443
No 37
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.08 E-value=95 Score=26.09 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhHHHHHHHHHHHHHhhhhhhh
Q 038975 252 QIQDRLKELRDIIPNGAKCSIDCLLDLTIKHMIFLKSITQCADK 295 (398)
Q Consensus 252 ~IqdR~KeLr~lVPNG~KcsId~lLe~tI~~m~FLq~~~k~adK 295 (398)
.....|++|.++=|+.++-.|.+|=.-|++|+++-..+++..++
T Consensus 6 ~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~ 49 (145)
T 3d9j_A 6 TFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEK 49 (145)
T ss_dssp HHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888898999999999999999999887777666544
Done!