BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038976
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 26/225 (11%)
Query: 9 DLGHHAGYYKLPHSHDAKMFYFFFESRNS-KKDPVVIWLTGGPGCSSELAVFYENGPFSI 67
++ + GY + D F++ FESRN KDPV++WL GGPGCSS +F+E GP SI
Sbjct: 13 NVTQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSI 71
Query: 68 ADNMSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSN------DLYDFL 121
++ + N + W+ + ++++DQP GFSY+ +GVSN D+Y+FL
Sbjct: 72 GPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSG--------SSGVSNTVAAGKDVYNFL 123
Query: 122 QAFFEEHPKLAE--NDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
+ FF++ P+ DF+I GESYAGHYIP FA+ + + + + NL IGNGLT
Sbjct: 124 ELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEI----LSHKDRNFNLTSVLIGNGLT 179
Query: 180 DPGVQYKAYPDYALDMG----IINKSQYNRISKIIPVCELAIKLC 220
DP QY Y A G ++ + + + + C I+ C
Sbjct: 180 DPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC 224
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 4 GVSVEDLGHHAGYYKLPHSHDAKMFYFFFES-RNSKKDPVVIWLTGGPGCSS-ELAVFYE 61
G D ++GY + +FY E+ +++ P+V+WL GGPGCSS E
Sbjct: 16 GQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASEE 75
Query: 62 NGPFSIADN-MSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDI-RHNENGVSNDLYD 119
G F + LV NE+ W+K +N+L++D P G GFSYT+ DI +N ++D Y
Sbjct: 76 LGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 135
Query: 120 FLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
FL +FE P DFYI GESYAGHY+P + VH ++K + INLKGF +GNGL
Sbjct: 136 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH---RSKNPV-INLKGFMVGNGLI 191
Query: 180 DPGVQYKAYPDYALDMGIINKSQYNRISKII---------PVCELAIKLC 220
D Y ++ + GI++ Y R+ + P C+ A +
Sbjct: 192 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 241
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 4 GVSVEDLGHHAGYYKLPHSHDAKMFYFFFES-RNSKKDPVVIWLTGGPGCSS-ELAVFYE 61
G D ++GY + +FY E+ +++ P+V+WL GGPGCSS E
Sbjct: 11 GQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASEE 70
Query: 62 NGPFSIADN-MSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDI-RHNENGVSNDLYD 119
G F + LV NE+ W+K +N+L++D P G GFSYT+ DI +N ++D Y
Sbjct: 71 LGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 130
Query: 120 FLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
FL +FE P DFYI GESYAGHY+P + VH ++K + INLKGF +GNGL
Sbjct: 131 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH---RSKNPV-INLKGFMVGNGLI 186
Query: 180 DPGVQYKAYPDYALDMGIINKSQYNRISKII---------PVCELAIKLC 220
D Y ++ + GI++ Y R+ + P C+ A +
Sbjct: 187 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 236
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 4 GVSVEDLGHHAGYYKLPHSHDAKMFYFFFES-RNSKKDPVVIWLTGGPGCSS-ELAVFYE 61
G D ++GY + +FY E+ +++ P+V+WL GGPGCSS E
Sbjct: 12 GQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASEE 71
Query: 62 NGPFSIADN-MSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDI-RHNENGVSNDLYD 119
G F + LV NE+ W+K +N+L++D P G GFSYT+ DI +N ++D Y
Sbjct: 72 LGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 131
Query: 120 FLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
FL +FE P DFYI GESYAGHY+P + VH ++K + INLKGF +GNGL
Sbjct: 132 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH---RSKNPV-INLKGFMVGNGLI 187
Query: 180 DPGVQYKAYPDYALDMGIINKSQYNRISKII---------PVCELAIKLC 220
D Y ++ + GI++ Y R+ + P C+ A +
Sbjct: 188 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 237
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 4 GVSVEDLGHHAGYYKLPHSHDAKMFYFFFES-RNSKKDPVVIWLTGGPGCSS-ELAVFYE 61
G D ++GY + +FY E+ +++ P+V+WL GGPGCSS E
Sbjct: 16 GQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASEE 75
Query: 62 NGPFSIAD-NMSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDI-RHNENGVSNDLYD 119
G F + LV NE+ W+K +N+L++D P G GFSYT+ DI +N ++D Y
Sbjct: 76 LGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 135
Query: 120 FLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
FL +FE P DFYI GESYAGHY+P + VH ++K + INLKGF +GNGL
Sbjct: 136 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVH---RSKNPV-INLKGFMVGNGLI 191
Query: 180 DPGVQYKAYPDYALDMGIINKSQYNRISKII---------PVCELAIKLC 220
D Y ++ + GI++ Y R+ + P C+ A +
Sbjct: 192 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVA 241
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 14/219 (6%)
Query: 9 DLGHHAGYYKLPHSHDAKMFYFFFESRNS-KKDPVVIWLTGGPGCSSELAVFYENGPFSI 67
++ + GY + D F++ FESRN KDPV++WL GGPGCSS +F+ GP SI
Sbjct: 13 NVTQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSI 71
Query: 68 ADNMSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEE 127
++ + N + W+ + ++++DQP GFSY+ N D+Y+FL+ FF++
Sbjct: 72 GPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLELFFDQ 129
Query: 128 HPKLAE--NDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLTDPGVQY 185
P+ DF+I G SYAGHYIP FA+ + + + + NL IGNGLTDP QY
Sbjct: 130 FPEYVNKGQDFHIAGASYAGHYIPVFASEI----LSHKDRNFNLTSVLIGNGLTDPLTQY 185
Query: 186 KAYPDYALDMG----IINKSQYNRISKIIPVCELAIKLC 220
Y A G ++ + + + + C I+ C
Sbjct: 186 NYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC 224
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 21/212 (9%)
Query: 13 HAGYYKLPHSHDAK------MFYFFFESRNSKKD-----PVVIWLTGGPGCSSELAVFYE 61
HAG+ L S DA + YFF++ N+ + P++IWL GGPGCSS E
Sbjct: 30 HAGHIPL-RSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVE 88
Query: 62 NGPFSIADNMSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDL---- 117
+GPF + + L NE W +LL++DQPTGTGFS +K + + ++N DL
Sbjct: 89 SGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVT 148
Query: 118 ---YDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAK--EGIHINLKGF 172
DFL+ +F+ P+ ++GESYAG YIP FA + N NK +G +LK
Sbjct: 149 KHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKAL 208
Query: 173 AIGNGLTDPGVQYKAYPDYALDMGIINKSQYN 204
IGNG DP Q +Y +A++ +I++S N
Sbjct: 209 LIGNGWIDPNTQSLSYLPFAMEKKLIDESNPN 240
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 12 HHAGYYKLPHSHDAKMFYFFFES-RNSKKDPVVIWLTGGPGCSSELAVFYENGPFSIA-D 69
++GY K S + Y+F ES ++ + PVV+WL GGPGCSS + E+GPF + D
Sbjct: 21 QYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPD 78
Query: 70 NMSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEEHP 129
++L +N + W+ +N+LY++ P G GFSY+ DK N+ V+ ++ LQ FF P
Sbjct: 79 GVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFP 137
Query: 130 KLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
+ N ++TGESYAG YIP A V + +NL+G A+GNGL+
Sbjct: 138 EYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSMNLQGLAVGNGLS 181
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 12 HHAGYYKLPHSHDAKMFYFFFES-RNSKKDPVVIWLTGGPGCSSELAVFYENGPFSIA-D 69
++GY K S + Y+F ES ++ + PVV+WL GGPGCSS + E+GPF + D
Sbjct: 23 QYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPD 80
Query: 70 NMSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEEHP 129
++L +N + W+ +N+LY++ P G GFSY+ DK N+ V+ ++ LQ FF P
Sbjct: 81 GVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFP 139
Query: 130 KLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGNGLT 179
+ N ++TGESYAG YIP A V + +NL+G A+GNGL+
Sbjct: 140 EYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSMNLQGLAVGNGLS 183
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 10 LGHHAGYYKLPHSHDAKMFYFFFESRNSKKDP--VVIWLTGGPGCSS-ELAVFYENGPFS 66
G + GY + ++ ++Y+F E+ + +V+WL GGPGCSS L E G F
Sbjct: 22 FGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLGAMQELGAFR 81
Query: 67 IADN-MSLVWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDLYDFLQAFF 125
+ N SL+ NE+ W+KA+N+L+ + P G GFSY++ D+ ++ ++ D Y FL +F
Sbjct: 82 VHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWF 141
Query: 126 EEHPKLAENDFYITGESYAGHYIPAFAARVH-NGNKAKEGIHINLKGFAIGNGLTD 180
E P +FYI GES GH+IP + V+ N N + IN +G + +GLT+
Sbjct: 142 ERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSP---FINFQGLLVSSGLTN 192
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ EHP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ EHP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ EHP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ EHP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ EHP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 22 SHDAKMFYFFFESRNSKKDPVV--------IWLTGGPGCSSELAVFYENGPFSIADNMSL 73
S +AK+ + + E+ ++ V + L G P S EL+ +
Sbjct: 91 SREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW------------- 137
Query: 74 VWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEEHPKLAE 133
++NE+ N +V Q TG + +K D+ + V+N + + + P +
Sbjct: 138 IFNEYP-SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNH-KVLGPPTPLILR 195
Query: 134 NDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGN 176
ND G Y P + A++G + L+ FA+GN
Sbjct: 196 ND------GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 22 SHDAKMFYFFFESRNSKKDPVV--------IWLTGGPGCSSELAVFYENGPFSIADNMSL 73
S +AK+ + + E+ ++ V + L G P S EL+ +
Sbjct: 90 SREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW------------- 136
Query: 74 VWNEHGWDKASNLLYVDQPTGTGFSYTSDKRDIRHNENGVSNDLYDFLQAFFEEHPKLAE 133
++NE+ N +V Q TG + +K D+ + V+N + + + P +
Sbjct: 137 IFNEYP-SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNH-KVLGPPTPLILR 194
Query: 134 NDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINLKGFAIGN 176
ND G Y P + A++G + L+ FA+GN
Sbjct: 195 ND------GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 231
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ EHP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ +HP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAQHPELVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 115 NDLYDFLQAFFEEHPKLAENDFYITGESYAGHYIPAFAARVHNGNKAKEGIHINL 169
+++YDF+ +HP+L G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAQHPELVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,966,438
Number of Sequences: 62578
Number of extensions: 364601
Number of successful extensions: 852
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 21
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)