BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038977
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 119/140 (85%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLNDPEAT+ TID EG LHTGDIGY+D DDE+FIVDR+KE+IK+KGFQV PAE+EALL++
Sbjct: 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIA 455
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
HP I+DA VV KDE AGEVPVAFVV+S + TE+ IK+YI+KQV+FYKR+ +V F+ A
Sbjct: 456 HPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEA 515
Query: 121 IPKSPSGKILRKDLIAKLAS 140
IPK+PSGKILRK+L KLA
Sbjct: 516 IPKAPSGKILRKNLKEKLAG 535
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 179 bits (453), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 118/142 (83%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN+P ATA TID +G LHTGDIG +D DDE+FIVDR+KE+IK+KGFQV PAE+EALL+
Sbjct: 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG 502
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
HP I D VV K+E AGEVPVAFVV+S EL+E+ +K++++KQVVFYKR++KV F +
Sbjct: 503 HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTES 562
Query: 121 IPKSPSGKILRKDLIAKLASSM 142
IPK+PSGKILRKDL AKLA+ +
Sbjct: 563 IPKAPSGKILRKDLRAKLANGL 584
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT ID EG LHTGDIGY D + FIVDR+K +IK+KG+QVPPAE+E++LL
Sbjct: 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HPSI DA V D VAGE+P A VV +G +TE+ + +Y+A QV KRL V FV
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVD 522
Query: 120 AIPKSPSGKI 129
+PK +GKI
Sbjct: 523 EVPKGLTGKI 532
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT ID EG LHTGDIGY D + FIVDR+K +IK+KG+QVPPAE+E++LL
Sbjct: 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HPSI DA V D VAGE+P A VV +G +TE+ + +Y+A QV KRL V FV
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVD 522
Query: 120 AIPKSPSGKI 129
+PK +GKI
Sbjct: 523 EVPKGLTGKI 532
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT ID EG LHTGDIGY D + FIVDR+K +IK+KG+QVPPAE+E++LL
Sbjct: 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HPSI DA V D VAGE+P A VV +G +TE+ + +Y+A QV KRL V FV
Sbjct: 463 HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVD 522
Query: 120 AIPKSPSGKI 129
+PK +GKI
Sbjct: 523 EVPKGLTGKI 532
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 89/130 (68%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT+A ID +G LH+GDI Y D D FIVDR+K +IK+KG+QVPPAE+E++LL
Sbjct: 436 YVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQ 495
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HP I DA V D AGE+P A VV G +TE+ + +Y+A QV KRL V FV
Sbjct: 496 HPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVD 555
Query: 120 AIPKSPSGKI 129
+PK +GKI
Sbjct: 556 EVPKGLTGKI 565
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT A ID +G LH+GDI Y D D+ FIVDR+K +IK+KG+QV PAE+E++LL
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HP+I DA V D+ AGE+P A VV +G +TE+ I +Y+A QV K+L V FV
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 520
Query: 120 AIPKSPSGKI 129
+PK +GK+
Sbjct: 521 EVPKGLTGKL 530
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT A ID +G LH+GDI Y D D+ FIVDR+K +IK+KG+QV PAE+E++LL
Sbjct: 406 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 465
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HP+I DA V D+ AGE+P A VV +G +TE+ I +Y+A QV K+L V FV
Sbjct: 466 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 525
Query: 120 AIPKSPSGKI 129
+PK +GK+
Sbjct: 526 EVPKGLTGKL 535
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT A ID +G LH+GDI Y D D+ FIVDR+K +IK+KG+QV PAE+E++LL
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HP+I DA V D+ AGE+P A VV +G +TE+ I +Y+A QV K+L V FV
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 520
Query: 120 AIPKSPSGKI 129
+PK +GK+
Sbjct: 521 EVPKGLTGKL 530
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+N+PEAT A ID +G LH+GDI Y D D+ FIVDR+K +IK+KG QV PAE+E++LL
Sbjct: 406 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQ 465
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVH 119
HP+I DA V D+ AGE+P A VV +G +TE+ I +Y+A QV K+L V FV
Sbjct: 466 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD 525
Query: 120 AIPKSPSGKI 129
+PK +GK+
Sbjct: 526 EVPKGLTGKL 535
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV 76
TGD+G++D + + DRVKE+IK+KG+ + P E+EALL H ++ D V+ + DE
Sbjct: 417 FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEE 476
Query: 77 AGEVPVAFVVRSNGF--ELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
AGEVP AF+V + ++ EE I E++ +++ YKR+ +V FV +P++ SGK+LR+ L
Sbjct: 477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLL 536
Query: 135 IAKLA 139
K A
Sbjct: 537 REKEA 541
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y N PEAT D G TGDIG +D + ++I DR+K++I G V PAEIE++++
Sbjct: 376 YWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
P +++ V+ DE GE+ A VV ++ E++E+ I EY ++ YK KV F A
Sbjct: 435 VPGVSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEA 493
Query: 121 IPKSPSGKILRKDLIAKLASSMP 143
IP++P+GKIL+ L + ++++P
Sbjct: 494 IPRNPTGKILKTVLREQYSATVP 516
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 81.3 bits (199), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+++P+ TAA I + L GD G D D + R +II G+++ P+E+E L+
Sbjct: 419 YVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGF------ELTEEAIKEYIAKQVVFYKRLHK 114
HP++ + V+ D V GEV AFVV ++ F +LT+E +++++ YK K
Sbjct: 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVTAPYKYPRK 536
Query: 115 VHFVHAIPKSPSGKILRKDL 134
+ FV +PK+ +GKI R L
Sbjct: 537 IEFVLNLPKTVTGKIQRAKL 556
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 81.3 bits (199), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y+++P+ TAA I + L GD G D D + R +II G+++ P+E+E L+
Sbjct: 419 YVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGF------ELTEEAIKEYIAKQVVFYKRLHK 114
HP++ + V+ D V GEV AFVV ++ F +LT+E +++++ YK K
Sbjct: 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE-LQQHVKSVTAPYKYPRK 536
Query: 115 VHFVHAIPKSPSGKILRKDL 134
+ FV +PK+ +GKI R L
Sbjct: 537 IEFVLNLPKTVTGKIQRAKL 556
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV--KEIIKFKGFQVPPAEIEALL 58
Y N+ AT G HTGD+G D D +F R KE+IK G V PAE+E L
Sbjct: 361 YWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGAL 419
Query: 59 LSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
HP+IADA V+ D E A V G + +A+ E++A + YK+ V FV
Sbjct: 420 KQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFV 479
Query: 119 HAIPKSPSGKILR 131
A+PK G I R
Sbjct: 480 EALPKDAKGAIDR 492
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 2/136 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDR-VKEIIKFKGFQVPPAEIEALLL 59
YLN P+ATAA +G TGD+ D D V IV R ++IK G+++ EIE LL
Sbjct: 367 YLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL 426
Query: 60 SHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE-EAIKEYIAKQVVFYKRLHKVHFV 118
HP + +A V + D GE VA++V ++ + +++A ++ +KR V ++
Sbjct: 427 EHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYL 486
Query: 119 HAIPKSPSGKILRKDL 134
A+P++ GKI+++ L
Sbjct: 487 DAVPRNDMGKIMKRAL 502
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y DPE T T +G HTGD+ ++D D ++ V R +IIK G++V P E+E+ L+
Sbjct: 438 YGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFYKRLHKVHF 117
HP++ + + D V G+V A +V + + ++ +++++ YK + F
Sbjct: 497 HPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEF 556
Query: 118 VHAIPKSPSGKILRKDLIAKLASS 141
V +PK+ SGKI R ++ K S
Sbjct: 557 VPELPKTISGKIRRVEIRDKDQSQ 580
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 16 GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
G +TGDI +DH+ V I DR K++I G + P +IE + P I+DA V D+
Sbjct: 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDD 434
Query: 76 VAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
G+VP + V + ++++ + Y++K + YK V +P + +GK+ R L
Sbjct: 435 TWGQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 66.2 bits (160), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++AK++ +H+ ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y PE T + +G TGD+G +D V I+ R K+++ GF V P EIE+ + +
Sbjct: 361 YWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
P + ++ V+ GE A VVR G + E + + Q+ +K KV FV
Sbjct: 421 XPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDD 480
Query: 121 IPKSPSGKILRKDL 134
+P++ GK+ + L
Sbjct: 481 LPRNTXGKVQKNVL 494
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y + EAT + + +G TGDI D + V I DR+K++IK G + ++E L+
Sbjct: 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVH-FVH 119
HP + +A VV E P+A VV G + T E + E++ K +L + F
Sbjct: 457 HPKVKEAAVVAIPHPKWQERPLAVVV-PRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAE 515
Query: 120 AIPKSPSGKILRKDL 134
IP++ +GK L++ L
Sbjct: 516 EIPRTSAGKFLKRAL 530
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN P+ATA + +G T D+ + V I+ RV + I G + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGT 423
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
P + + V+ D+ G+ A VV G L+ +A+ + + ++ +KR + +
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
+PK+ K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++ K++ +H+ ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++ K++ +H+ ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++ K++ +H+ ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++ K++ +H+ ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++ K++ +H+ ++PK+ SGKI+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 63.2 bits (152), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y P+ A+ D G +GD+ +D + + + R K+ I G ++ EIE LLL
Sbjct: 396 YYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLR 455
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVH 119
HP++ A +V +DE+ GE A++V + ++ ++ +Q + +K +V V
Sbjct: 456 HPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQ--VRRFLREQGIAEFKLPDRVECVD 513
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
++P + GK+ +K L LAS
Sbjct: 514 SLPLTAVGKVDKKQLRQWLAS 534
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 63.2 bits (152), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN PEATA + +G T D+ + V I+ RV ++I G + P+EIE +L +
Sbjct: 365 YLNQPEATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
P + + V+ D+ G+ A VV G L+ +A+ + + ++ +KR + +
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
+PK+ K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 62.4 bits (150), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN P+ATA + +G T D+ + V I+ RV ++I G + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
P + + V+ D+ G+ A VV G L+ +A+ + + ++ +KR + +
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
+PK+ K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN P+ATA + +G T D+ + V I+ RV ++I G + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
P + + V+ D+ G+ A VV G L+ +A+ + + ++ +KR + +
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
+PK+ K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN P+ATA + +G T D+ + V I+ RV ++I G + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
P + + V+ D+ G+ A VV G L+ +A+ + + ++ +KR + +
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
+PK+ K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
+ + +GD D D +I RV +++ G ++ AEIE+ L++HP IA+A VV
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 75 EVAGEVPVAFVVRSNGFELTEE---AIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILR 131
+ G+ A+V ++G E + E ++ ++ K++ +H+ ++PK+ SG I+R
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMR 612
Query: 132 KDLIAKLAS 140
+ ++ K+A+
Sbjct: 613 R-ILRKIAA 620
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
YLN P+ATA + +G T D+ + V I+ RV ++I G + P+EIE +L +
Sbjct: 365 YLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGT 423
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYI-AKQVVFYKRLHKVHFVH 119
P + + V+ D+ G+ A VV G L+ +A+ + + ++ +KR + +
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILD 483
Query: 120 AIPKSPSGKILRKDLIAKLAS 140
+PK+ K+LR+ L+ +++S
Sbjct: 484 QLPKNALNKVLRRQLVQQVSS 504
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y PE + D + ++GD+ D + +V R+K+ I G ++ EIE L+L
Sbjct: 401 YYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILL 460
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVH 119
HP + A +V DE GE AF+V N EL ++ ++ + + YK ++ +
Sbjct: 461 HPEVMHAALVAIVDEQFGEKSCAFIVSRNP-ELKAVVLRRHLMELGIAQYKLPDQIKLIE 519
Query: 120 AIPKSPSGKILRKDLIAKLASS 141
++P + GK+ +K L + L +S
Sbjct: 520 SLPLTAVGKVDKKQLRSILNTS 541
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 16 GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDE 75
G TGD D D ++I+ RV +++ G ++ AEIEA ++ P +A+ VV D+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD 562
Query: 76 VAGEVPVAFVV---RSNGFELTEEAIKEYIAKQVVFYKRLHKVHF--------VHAIPKS 124
+ G+ AFVV +S+ T++ +++ I K +VF R F V +PK+
Sbjct: 563 LTGQAVAAFVVLKNKSSWSTATDDELQD-IKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 621
Query: 125 PSGKILRKDLIAKLAS 140
SGKI+R+ L LA
Sbjct: 622 RSGKIMRRILRKILAG 637
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y E AA+ +G TGDI + D + + R K+ I G +V E+E LL+
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVH 119
HP++ DA +V D+ GE F++ + E +K ++ ++ + YK +V FV
Sbjct: 452 HPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAE-LKAFLRERGLAAYKIPDRVEFVE 510
Query: 120 AIPKSPSGKILRKDL 134
+ P++ GK+ +K L
Sbjct: 511 SFPQTGVGKVSKKAL 525
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y E AA+ +G TGDI + D + + R K+ I G +V E+E LL+
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
HP++ DA V D+ GE F++ + E + + YK +V FV +
Sbjct: 452 HPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVES 511
Query: 121 IPKSPSGKILRKDL 134
P++ GK+ +K L
Sbjct: 512 FPQTGVGKVSKKAL 525
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
E + TGD+ D + V R + +K +GF+V P E+EA L+ HP++ A V+ Q
Sbjct: 445 ERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDS 504
Query: 75 EVAGEVPVAFVVRSNGFELTEEA-IKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKD 133
+ + VA+VV + A ++ ++A+ + Y + V +P++P+GK+ R+
Sbjct: 505 RLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRA 564
Query: 134 L 134
L
Sbjct: 565 L 565
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 13/147 (8%)
Query: 1 YLNDPEATAA---TIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
YLN+PE TA T + HTGDIG + D+ + R+ IK+ G+++ ++
Sbjct: 362 YLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQ 421
Query: 58 LLSHPSIADATVVPQKD-EVAGEVPVAFVVRSNG--------FELTEEAIKEYIAKQVVF 108
L P +A A VP+ + E + +A++V +G ELT +AIK + ++
Sbjct: 422 LNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELT-KAIKASVKDHMMS 480
Query: 109 YKRLHKVHFVHAIPKSPSGKILRKDLI 135
Y K + ++P +P+GKI K LI
Sbjct: 481 YMMPSKFLYRDSLPLTPNGKIDIKTLI 507
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y PE T + +G TGD+G +D V I+ R +++ GF V P EIE+ + +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
P + ++ V+ GE A VVR G + E + + Q+ + V FV
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDD 480
Query: 121 IPKSPSGKI 129
+P++ G +
Sbjct: 481 LPRNTMGAV 489
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 55.8 bits (133), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y PE T + +G TGD+G +D V I+ R +++ GF V P EIE+ + +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHA 120
P + ++ V+ GE AFVV F +E + + Q+ + V FV
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDD 480
Query: 121 IPKSPSGKI 129
+P++ G +
Sbjct: 481 LPRNTMGAV 489
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y PE T + +G TGD+G +D V I+ R +++ GF V P EIE+ + +
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 61 HPSIADATVVPQKDEVAGEVPVAFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKVHF 117
P + ++ V+ GE AFVV F E+ E + ++ ++ + V F
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIF 480
Query: 118 VHAIPKSPSGKI 129
V +P++ G +
Sbjct: 481 VDDLPRNTMGAV 492
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 1 YLNDPEATA---ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
YL PE T ID E TGD GYV+ + +F R+ IK G+++ EIE
Sbjct: 359 YLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHH 417
Query: 58 LLSHPSIADATVVPQKDEVAGEVPVAFVVRS-----NGFELTEEAIKEYIAKQVVFYKRL 112
L + + A +VP K + +A VV F+LT AIK+ + +++ Y
Sbjct: 418 LRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS-AIKKELNERLPNYMIP 476
Query: 113 HKVHFVHAIPKSPSGKILRKDLIAKLAS 140
K + +IP +P+GK+ RK L++++ +
Sbjct: 477 RKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 1 YLNDPEATA---ATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
YL PE T ID E TGD GYV+ + +F R+ IK G+++ EIE
Sbjct: 359 YLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHH 417
Query: 58 LLSHPSIADATVVPQKDEVAGEVPVAFVVRS-----NGFELTEEAIKEYIAKQVVFYKRL 112
L + + A +VP K + +A VV F+LT AIK+ + +++ Y
Sbjct: 418 LRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS-AIKKELNERLPNYMIP 476
Query: 113 HKVHFVHAIPKSPSGKILRKDLIAKLAS 140
K + +IP +P+GK+ RK L++++ +
Sbjct: 477 RKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 15 EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74
E L TGD+ D + R+ + +K +G ++ EIE L +P + DA VV +
Sbjct: 837 ETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRH 896
Query: 75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDL 134
E A++V N +L+ E +K ++ KQ+ Y F+ +P + +GK+ ++ L
Sbjct: 897 ESGDASINAYLV--NRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFI-VDRVKEIIKFKGFQVPPAEIEALLL 59
Y N+ E + AT E + +GD Y + ++ R +++K G V P E+E +L+
Sbjct: 392 YWNNREKSRATFLGE-WIRSGD-KYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV 449
Query: 60 SHPSIADATVVPQKDEVAGEVPV-AFVVRSNGF---ELTEEAIKEYIAKQVVFYKRLHKV 115
H ++ +A VV G V AFVV F E+ E +K ++ ++ +K +
Sbjct: 450 QHDAVLEAAVVGVDH--GGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDI 507
Query: 116 HFVHAIPKSPSGKILRKDL 134
FV +PK+ +GKI R L
Sbjct: 508 VFVDDLPKTATGKIQRFKL 526
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 1 YLNDPEATAAT------IDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEI 54
Y PE T+ + E L TGD D + + R+ +K +G +V E+
Sbjct: 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEV 445
Query: 55 EALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHK 114
E++LL H I++ V KD A+ V L E ++++ ++++ Y +
Sbjct: 446 ESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL--EQLRQFSSEELPTY--MIP 501
Query: 115 VHFVH--AIPKSPSGKILRKDL 134
+F+ +P + +GKI RK L
Sbjct: 502 SYFIQLDKMPLTSNGKIDRKQL 523
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 1 YLNDPEAT-AATIDVEGLL--HTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEAL 57
YL +PE T A EG TGD G++ D ++F R+ IK G+++ EIE
Sbjct: 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFH 416
Query: 58 LLSHPSIADATVVPQKDEVAGEVPVAFVVR-----SNGFELTEEAIKEYIAKQVVFYKRL 112
+ + A V+P + E +A +V F+LT AIK+ +A + Y
Sbjct: 417 VRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLT-SAIKKELAASLPAYMIP 475
Query: 113 HKVHFVHAIPKSPSGKILRKDL 134
K + I + +GKI RK +
Sbjct: 476 RKFIYQDHIQMTANGKIDRKRI 497
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60
Y D + + I G L TGD+GY+ D +++ R+K++I +G + P +IE +
Sbjct: 424 YFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQ 481
Query: 61 HPSI--ADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFV 118
P I DA E ++ + R + E + I A+ + + +
Sbjct: 482 EPEIHSGDAIAFVTAQE---KIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLL 538
Query: 119 --HAIPKSPSGKILRKD 133
H+IP++ SGK R +
Sbjct: 539 PPHSIPRTSSGKPARAE 555
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 1 YLNDPEAT----AATIDVEG----LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPA 52
Y N PE T A I + L TGD+G++ H++E+++ R+K++I G P
Sbjct: 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFL-HENELYVTGRIKDLIIIYGKNHYPQ 471
Query: 53 EIEALLLSHP 62
+IE L P
Sbjct: 472 DIEFSLXHSP 481
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVD 36
Y N PEAT D G TGDIG +D + ++I D
Sbjct: 362 YWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKD 396
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 32.7 bits (73), Expect = 0.080, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 14/149 (9%)
Query: 1 YLNDPEATAAT---IDVEGLL----HTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAE 53
Y ND T A+ + G L TGD D + + R +K G+++
Sbjct: 374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA 433
Query: 54 IEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH 113
+E P I D ++ ++ ++ A+ ++ +A + + +Q+ ++R H
Sbjct: 434 LEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA-------DASPQALLRQLPTWQRPH 486
Query: 114 KVHFVHAIPKSPSGKILRKDLIAKLASSM 142
V A+P + GK+ R L+ +L +
Sbjct: 487 ACVRVEALPLTAHGKLDRAALLRRLEEPL 515
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 93 LTEEAIKEYIAKQVVFYKRLHKVHFVH 119
L EE + Y+A+ V+ +H++H+VH
Sbjct: 172 LPEEMARFYLAEMVIAIDSVHQLHYVH 198
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei
Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei
Jf-1
Length = 132
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 29 DDEVFIVDRVKEIIKFKGFQVPPA 52
DD+ I+D K+I++F+G++V A
Sbjct: 10 DDDTAILDSTKQILEFEGYEVEIA 33
>pdb|3KN7|A Chain A, Crystal Structure Of Haemophilus Influenzae Y195a Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 21 GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80
G IGYV +++V + K KG +V ++ L + A +V Q E GEV
Sbjct: 131 GKIGYVSTSGA--FLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVE-NGEV 187
Query: 81 PVAFVVRSNGFELTEEAIKEYIAKQVVF 108
P A + + + L +E E + ++ F
Sbjct: 188 PAALINNAYWYNLAKEKGVENLKSRLYF 215
>pdb|2O69|A Chain A, Crystal Structure Of Haemophilus Influenzae N193l Mutant
Fbpa
Length = 309
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 21 GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80
G IGYV +++V + K KG +V ++ L + A +V Q E GEV
Sbjct: 131 GKIGYVSTSGA--FLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVE-NGEV 187
Query: 81 PVAFVVRSNGFELTEEAIKEYIAKQVVF 108
P A ++ + L +E E + ++ F
Sbjct: 188 PAALILNYYWYNLAKEKGVENLKSRLYF 215
>pdb|3L6I|A Chain A, Crystal Structure Of The Uncharacterized Lipoprotein Yceb
From E. Coli At The Resolution 2.0a. Northeast
Structural Genomics Consortium Target Er542
pdb|3L6I|B Chain B, Crystal Structure Of The Uncharacterized Lipoprotein Yceb
From E. Coli At The Resolution 2.0a. Northeast
Structural Genomics Consortium Target Er542
Length = 181
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 30 DEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSN 89
+ +F + +K K V E A+ L + DATV P+K + + + ++
Sbjct: 71 NSLFGSQKATXKLKLKALPVFDKEKGAIFLKEXEVVDATVQPEKXQTVXQTLLPYL---- 126
Query: 90 GFELTEEAIKEYIAKQVVFYKR 111
+A++ Y +Q + R
Sbjct: 127 -----NQALRNYFNQQPAYVLR 143
>pdb|3LQY|A Chain A, Crystal Structure Of Putative Isochorismatase Hydrolase
From Oleispira Antarctica
Length = 190
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 42 IKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG 78
++F G VP A++ A S S A A V + +AG
Sbjct: 153 LEFNGITVPAAQVHAAFXSALSFAYANVASADELIAG 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,342,214
Number of Sequences: 62578
Number of extensions: 169574
Number of successful extensions: 559
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 74
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)