Query 038977
Match_columns 145
No_of_seqs 106 out of 1096
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 2.1E-35 7.1E-40 224.9 15.2 141 1-141 361-501 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3.2E-35 1.1E-39 225.2 14.8 139 1-139 396-534 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 5.4E-35 1.8E-39 223.2 15.3 141 1-143 376-516 (517)
4 1t5h_X 4-chlorobenzoyl COA lig 100.0 1E-34 3.5E-39 221.0 16.2 138 1-139 365-503 (504)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.1E-34 3.8E-39 222.4 15.0 141 1-142 392-533 (539)
6 2d1s_A Luciferase, luciferin 4 100.0 2.3E-34 8E-39 221.1 14.2 143 1-143 403-546 (548)
7 3nyq_A Malonyl-COA ligase; A/B 100.0 6.8E-34 2.3E-38 216.7 14.4 136 1-136 367-504 (505)
8 3etc_A AMP-binding protein; ad 100.0 4.6E-34 1.6E-38 220.8 13.5 139 1-140 438-579 (580)
9 3g7s_A Long-chain-fatty-acid-- 100.0 5.1E-34 1.8E-38 219.1 10.1 141 1-141 397-543 (549)
10 3rg2_A Enterobactin synthase c 100.0 6.8E-33 2.3E-37 215.5 16.1 138 1-140 396-534 (617)
11 1v25_A Long-chain-fatty-acid-C 100.0 2.4E-34 8.2E-39 220.7 6.8 142 1-143 397-539 (541)
12 1pg4_A Acetyl-COA synthetase; 100.0 9.5E-33 3.3E-37 215.9 15.0 141 1-141 477-622 (652)
13 3fce_A D-alanine--poly(phospho 100.0 1.3E-32 4.5E-37 209.6 14.5 141 1-142 359-506 (512)
14 3l8c_A D-alanine--poly(phospho 100.0 5.7E-33 2E-37 211.9 11.9 142 1-142 362-514 (521)
15 3c5e_A Acyl-coenzyme A synthet 100.0 1.4E-32 4.9E-37 212.1 13.7 139 1-140 419-562 (570)
16 3o83_A Peptide arylation enzym 100.0 4E-34 1.4E-38 219.6 4.3 140 1-141 401-541 (544)
17 3e7w_A D-alanine--poly(phospho 100.0 6.5E-32 2.2E-36 205.8 16.4 140 1-141 358-504 (511)
18 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-32 5.6E-37 208.5 12.4 136 1-140 362-497 (501)
19 1amu_A GRSA, gramicidin synthe 100.0 1.8E-32 6.2E-37 211.2 12.3 136 1-138 386-527 (563)
20 3ivr_A Putative long-chain-fat 100.0 5E-34 1.7E-38 217.3 2.9 140 1-141 361-502 (509)
21 1ry2_A Acetyl-coenzyme A synth 100.0 2.9E-32 9.9E-37 213.5 11.0 141 1-141 486-638 (663)
22 3rix_A Luciferase, luciferin 4 100.0 1.2E-33 4.2E-38 217.0 3.0 142 1-142 401-543 (550)
23 3tsy_A Fusion protein 4-coumar 100.0 2.9E-33 1E-37 226.7 4.0 142 1-142 443-584 (979)
24 4gr5_A Non-ribosomal peptide s 100.0 4.2E-33 1.4E-37 214.9 2.4 137 1-137 423-568 (570)
25 2v7b_A Benzoate-coenzyme A lig 100.0 3.7E-31 1.3E-35 202.3 11.9 134 1-136 392-528 (529)
26 4dg8_A PA1221; ANL superfamily 100.0 3E-31 1E-35 206.5 8.4 134 1-141 374-514 (620)
27 2vsq_A Surfactin synthetase su 100.0 2.5E-30 8.7E-35 214.3 13.0 135 1-137 817-957 (1304)
28 3ite_A SIDN siderophore synthe 100.0 4.6E-31 1.6E-35 203.1 2.6 140 1-140 388-543 (562)
29 4gs5_A Acyl-COA synthetase (AM 100.0 8.1E-29 2.8E-33 181.7 10.8 127 13-141 225-355 (358)
30 3gqw_A Fatty acid AMP ligase; 100.0 6.5E-29 2.2E-33 191.1 10.7 138 1-142 425-565 (576)
31 3kxw_A Saframycin MX1 syntheta 100.0 2.3E-29 7.9E-34 194.3 6.6 140 1-142 413-569 (590)
32 3qov_A Phenylacetate-coenzyme 99.9 3.9E-24 1.3E-28 160.1 8.7 122 8-132 292-429 (436)
33 2y4o_A Phenylacetate-coenzyme 99.9 3.5E-24 1.2E-28 160.6 7.9 125 8-133 299-437 (443)
34 2y27_A Phenylacetate-coenzyme 99.9 9.6E-24 3.3E-28 158.0 6.4 124 8-133 297-432 (437)
35 3gxs_A Phenylacetate-coenzyme 99.8 3.2E-18 1.1E-22 105.7 8.6 94 36-131 1-101 (109)
36 3lax_A Phenylacetate-coenzyme 99.8 5.6E-18 1.9E-22 104.5 8.9 95 36-131 1-101 (109)
37 4b2g_A GH3-1 auxin conjugating 97.7 9E-05 3.1E-09 57.6 6.8 44 17-60 411-458 (609)
38 4eql_A 4-substituted benzoates 97.5 4.6E-05 1.6E-09 59.0 3.2 45 17-61 399-447 (581)
39 4epl_A Jasmonic acid-amido syn 97.5 0.00038 1.3E-08 53.9 8.3 44 17-60 406-453 (581)
40 4dcz_A DNAJ-like protein Mg200 45.4 33 0.0011 19.2 3.5 15 22-36 54-68 (92)
41 3pur_A Lysine-specific demethy 39.7 40 0.0014 26.0 4.4 42 18-60 370-411 (528)
42 1smp_I Erwinia chrysanthemi in 39.2 52 0.0018 19.3 4.0 31 13-43 54-86 (101)
43 2cqa_A RUVB-like 2; TIP48, TIP 35.7 35 0.0012 19.8 2.8 22 18-39 63-85 (95)
44 3kv4_A PHD finger protein 8; e 34.7 70 0.0024 24.0 5.0 42 17-59 304-345 (447)
45 3k3o_A PHF8, PHD finger protei 32.9 49 0.0017 24.2 3.8 43 17-60 220-262 (371)
46 3pua_A GRC5, PHD finger protei 32.5 48 0.0016 24.5 3.7 44 17-61 247-290 (392)
47 3kv5_D JMJC domain-containing 30.5 64 0.0022 24.5 4.2 42 17-59 339-380 (488)
48 3kv9_A JMJC domain-containing 30.0 58 0.002 24.1 3.8 42 17-59 248-289 (397)
49 3hhe_A Ribose-5-phosphate isom 29.7 74 0.0025 22.0 4.1 51 15-72 182-233 (255)
50 2jwk_A Protein TOLR; periplasm 28.6 68 0.0023 16.7 3.9 30 24-61 7-39 (74)
51 1z9i_A Epidermal growth factor 28.2 28 0.00097 17.7 1.4 16 120-135 21-37 (53)
52 2hiy_A Hypothetical protein; C 27.7 46 0.0016 21.6 2.7 34 41-75 13-47 (183)
53 2pfu_A Biopolymer transport EX 27.4 65 0.0022 18.0 3.1 23 39-61 29-51 (99)
54 2ra9_A Uncharacterized protein 24.5 92 0.0032 19.6 3.5 32 19-61 20-53 (150)
55 1ghh_A DINI, DNA-damage-induci 23.4 48 0.0017 18.5 1.9 44 96-139 23-68 (81)
56 1m0s_A Ribose-5-phosphate isom 22.6 85 0.0029 21.0 3.3 45 17-71 156-200 (219)
57 2ejy_A 55 kDa erythrocyte memb 22.3 88 0.003 17.7 3.0 23 39-61 59-84 (97)
58 1jiw_I Proteinase inhibitor; p 21.7 1.3E+02 0.0043 17.8 3.6 28 13-40 57-86 (106)
59 2yu1_A JMJC domain-containing 20.8 1.2E+02 0.0041 22.8 4.1 40 18-58 270-309 (451)
60 1o8b_A Ribose 5-phosphate isom 20.8 1.1E+02 0.0039 20.4 3.6 45 17-71 155-199 (219)
61 2ypd_A Probable JMJC domain-co 20.7 1.9E+02 0.0065 21.4 5.0 42 18-60 297-338 (392)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.1e-35 Score=224.85 Aligned_cols=141 Identities=29% Similarity=0.449 Sum_probs=135.0
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 361 Y~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 440 (503)
T 4fuq_A 361 YWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEG 440 (503)
T ss_dssp BTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCce
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
++++++...+...+.+++.+.++++|+.+++|..++++++||+|++||++|++|++++.+-
T Consensus 441 ~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 441 VTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred eEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9999998888788889999999999999999999999999999999999999999998754
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.2e-35 Score=225.21 Aligned_cols=139 Identities=71% Similarity=1.110 Sum_probs=132.1
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~ 475 (536)
T 3ni2_A 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEV 475 (536)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCce
Confidence 89999999999988999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA 139 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~ 139 (145)
++++++...+...+.+++.++++++++.+++|..++++++||+|++||++|++|++++.
T Consensus 476 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 476 PVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 99999988877788899999999999999999999999999999999999999998775
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.4e-35 Score=223.22 Aligned_cols=141 Identities=38% Similarity=0.648 Sum_probs=132.6
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|. +|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 376 Y~~~p~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~ 454 (517)
T 3r44_A 376 YWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEI 454 (517)
T ss_dssp ETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred hCCChhhhHhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCce
Confidence 8999999999995 999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMP 143 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~ 143 (145)
+++++ ...+...+.+++.++++++|+.+++|..++++++||+|++||++|++|++++.+.++
T Consensus 455 ~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 455 AAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 77777 555566788999999999999999999999999999999999999999999998875
No 4
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1e-34 Score=220.96 Aligned_cols=138 Identities=28% Similarity=0.492 Sum_probs=131.4
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.| .+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 365 Y~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~ 443 (504)
T 1t5h_X 365 YLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443 (504)
T ss_dssp BTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEE
T ss_pred ecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcE
Confidence 899999999999 4899999999999999999999999999999999999999999999999999999999999888899
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLA 139 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~ 139 (145)
+++++++..+...+.+++.+++++ +|+.+++|+.++++++||+|++||++|++|++++.
T Consensus 444 ~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 444 VTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 999999887766788899999998 99999999999999999999999999999999874
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.1e-34 Score=222.41 Aligned_cols=141 Identities=28% Similarity=0.497 Sum_probs=131.9
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|++.|..+|||+|||+|++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 392 Y~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~ 471 (539)
T 1mdb_A 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGER 471 (539)
T ss_dssp CTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCce
Confidence 99999999999987999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhc-cccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQ-VVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
+++++++.. ...+.+++.+.++++ |+.+++|..++++++||+|++||++|++|++++.+.+
T Consensus 472 ~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 472 SCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp EEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred EEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 888888763 356778999999997 9999999999999999999999999999999987654
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.3e-34 Score=221.07 Aligned_cols=143 Identities=51% Similarity=0.804 Sum_probs=135.0
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|..+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 403 Y~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~ 482 (548)
T 2d1s_A 403 YVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL 482 (548)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCee
Confidence 89999999999987999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCce-EEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVHAIPKSPSGKILRKDLIAKLASSMP 143 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~ 143 (145)
+++++++..+...+.+++.++++++++.+++|+ .+.+++++|+|++||++|++|++++.+.+.
T Consensus 483 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 483 PGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred eEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence 899998887766788999999999999999999 999999999999999999999999987663
No 7
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.8e-34 Score=216.67 Aligned_cols=136 Identities=34% Similarity=0.543 Sum_probs=115.8
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeec-CCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCc
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV-KEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGE 79 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~-d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~ 79 (145)
||++|+.|++.|..+|||+|||++++|++|.++++||+ |++||++|.+|+|.+||+.|.++|.|.++++++.++...++
T Consensus 367 Y~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~ 446 (505)
T 3nyq_A 367 YLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGE 446 (505)
T ss_dssp ETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEE
T ss_pred hCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCc
Confidence 89999999999988999999999999999999999998 69999999999999999999999999999999999988888
Q ss_pred eeEEEEEeCC-CCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977 80 VPVAFVVRSN-GFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA 136 (145)
Q Consensus 80 ~~~~~v~~~~-~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~ 136 (145)
.+++++++.. ....+.+++.++++++|+.+++|..++++++||+|++||++|++|++
T Consensus 447 ~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 447 RIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999998875 34567789999999999999999999999999999999999999986
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.6e-34 Score=220.81 Aligned_cols=139 Identities=32% Similarity=0.563 Sum_probs=111.9
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|++.|. +|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 438 Y~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~ 516 (580)
T 3etc_A 438 YGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV 516 (580)
T ss_dssp ETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred ccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcE
Confidence 8999999999996 999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred eEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977 81 PVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS 140 (145)
Q Consensus 81 ~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~ 140 (145)
+.+++++..+.... .+++.+.+++.++.+++|+.+.++++||+|++||++|++|++++.+
T Consensus 517 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 517 IKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 99999988765443 3689999999999999999999999999999999999999998765
No 9
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.1e-34 Score=219.09 Aligned_cols=141 Identities=38% Similarity=0.670 Sum_probs=92.3
Q ss_pred CCCChhhhhcccC--CCC--eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC
Q 038977 1 YLNDPEATAATID--VEG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV 76 (145)
Q Consensus 1 Y~~~~~~t~~~~~--~~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~ 76 (145)
||++|+.|.+.|. .+| ||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++..
T Consensus 397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 476 (549)
T 3g7s_A 397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE 476 (549)
T ss_dssp ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence 8999999999982 466 999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeEEEEEeCCC--CccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 77 AGEVPVAFVVRSNG--FELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 77 ~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
.++.+++++++..+ ...+.+++.++++++|+.+++|..+.++++||+|++||++|++|++.+.+.
T Consensus 477 ~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp ----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------
T ss_pred cCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence 88899999988776 456789999999999999999999999999999999999999999987654
No 10
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6.8e-33 Score=215.45 Aligned_cols=138 Identities=29% Similarity=0.498 Sum_probs=129.4
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
|||+|+.|++.|..++||+|||+++++++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 396 Y~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 475 (617)
T 3rg2_A 396 YYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEK 475 (617)
T ss_dssp CTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCee
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999988878888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS 140 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~ 140 (145)
++++++... ..+..++.+.+++ .++.+++|..+++++.||+|++||++|++|++.+..
T Consensus 476 ~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 476 SCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp EEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred EEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 888888765 3567889999998 699999999999999999999999999999998754
No 11
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.4e-34 Score=220.65 Aligned_cols=142 Identities=30% Similarity=0.454 Sum_probs=94.6
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|++.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++..+++.
T Consensus 397 Y~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~ 476 (541)
T 1v25_A 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 476 (541)
T ss_dssp CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred ccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCce
Confidence 99999999999987999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccCC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSMP 143 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~~ 143 (145)
+++++++. +...+.+++.+++.+ +|+.+++|..++++++||+|++||++|++|++.+.+.+.
T Consensus 477 ~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 477 PLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred EEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 88888765 334556788999998 899999999999999999999999999999999877653
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9.5e-33 Score=215.89 Aligned_cols=141 Identities=28% Similarity=0.448 Sum_probs=130.1
Q ss_pred CCCChhhhhccc--CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977 1 YLNDPEATAATI--DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG 78 (145)
Q Consensus 1 Y~~~~~~t~~~~--~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~ 78 (145)
||++|+.+.+.| ..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus 477 Y~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g 556 (652)
T 1pg4_A 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556 (652)
T ss_dssp ETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTE
T ss_pred hcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCC
Confidence 899999988776 248999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEEeCCCCccC---HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 79 EVPVAFVVRSNGFELT---EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 79 ~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
+.+++++++..+...+ .+++.+++++.++.+++|..+++++.||+|++||++|+.|++.+..+
T Consensus 557 ~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 557 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred eEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 8999999988765443 47899999999999999999999999999999999999999998775
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-32 Score=209.60 Aligned_cols=141 Identities=30% Similarity=0.430 Sum_probs=127.6
Q ss_pred CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977 1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA 77 (145)
Q Consensus 1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~ 77 (145)
||++|+.|.+.| +++|||+|||++++ ++|.+++.||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...
T Consensus 359 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 437 (512)
T 3fce_A 359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEK 437 (512)
T ss_dssp BTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTE
T ss_pred hcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCC
Confidence 999999999998 45789999999999 89999999999999999999999999999999999999999999988888
Q ss_pred CceeEEEEEeCCCCccCH----HHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977 78 GEVPVAFVVRSNGFELTE----EAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
++.+++++++........ +++.+.++++|+.+++|..+++++++|+|++||++|++|++.+.++-
T Consensus 438 ~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 438 YDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp EEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred ceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 888888888876544332 57889999999999999999999999999999999999999987653
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.7e-33 Score=211.91 Aligned_cols=142 Identities=28% Similarity=0.467 Sum_probs=118.7
Q ss_pred CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCC-
Q 038977 1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEV- 76 (145)
Q Consensus 1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~- 76 (145)
||++|+.|++.| +++|||+|||+|++|++|++++.||+||+||++|.+|+|.+||+.|.++|.|.++++++..+..
T Consensus 362 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 362 YLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp BTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSC
T ss_pred hcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCC
Confidence 999999999998 5678999999999999999999999999999999999999999999999999999999877543
Q ss_pred CCceeEEEEEeCCCCccC-------HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977 77 AGEVPVAFVVRSNGFELT-------EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~-------~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
.++.+++++++..+.... .+++.+.++++|+.+++|..++++++||+|++||++|++|++++.++-
T Consensus 442 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp C---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 456788888887764321 467889999999999999999999999999999999999999886653
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.4e-32 Score=212.08 Aligned_cols=139 Identities=32% Similarity=0.536 Sum_probs=127.4
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|. +|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 419 Y~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~ 497 (570)
T 3c5e_A 419 YVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497 (570)
T ss_dssp ETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred ccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeE
Confidence 8999999999995 899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCc-----cCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977 81 PVAFVVRSNGFE-----LTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS 140 (145)
Q Consensus 81 ~~~~v~~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~ 140 (145)
+++++++..+.. ...+++.+.+++.++.+++|..+.++++||+|++||++|++|++.+..
T Consensus 498 ~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 498 VKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 888888765431 124688899999999999999999999999999999999999998754
No 16
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4e-34 Score=219.56 Aligned_cols=140 Identities=29% Similarity=0.473 Sum_probs=38.3
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|++.|..+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 401 Y~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~ 480 (544)
T 3o83_A 401 YYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK 480 (544)
T ss_dssp CTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------
T ss_pred hcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCce
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHh-ccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAK-QVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
++++++... ...+..++.+.+.+ .++.+++|..++++++||+|++||++|++|++++.+.
T Consensus 481 ~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 481 SCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 888887665 34556778888888 7999999999999999999999999999999988764
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6.5e-32 Score=205.81 Aligned_cols=140 Identities=26% Similarity=0.350 Sum_probs=126.3
Q ss_pred CCCChhhhhccc---CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCC
Q 038977 1 YLNDPEATAATI---DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVA 77 (145)
Q Consensus 1 Y~~~~~~t~~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~ 77 (145)
||++|+.|++.| ++.+||+|||++++ ++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...
T Consensus 358 Y~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp BTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSS
T ss_pred hCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCC
Confidence 999999999998 22337999999999 69999999999999999999999999999999999999999999988888
Q ss_pred CceeEEEEEeCCCCccC----HHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 78 GEVPVAFVVRSNGFELT----EEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 78 ~~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
++.+++++++..+.... .+++.+.++++|+.+++|..++++++||+|++||++|++|++.+...
T Consensus 437 ~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 437 VEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp CCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred ceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 88889988887765444 36788899999999999999999999999999999999999988653
No 18
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.6e-32 Score=208.55 Aligned_cols=136 Identities=29% Similarity=0.505 Sum_probs=110.2
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.. | .+|||+|||++++|++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 362 Y~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~ 439 (501)
T 3ipl_A 362 YLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQV 439 (501)
T ss_dssp CSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred hCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCce
Confidence 8999999988 6 4899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHc
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLAS 140 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~ 140 (145)
++++++... ..+.+++.++++++|+.+++|..++++++||+|++||++|++|++...+
T Consensus 440 ~~a~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 440 PKLYFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEEEEEeCC--CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 888887643 4677899999999999999999999999999999999999999987654
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.98 E-value=1.8e-32 Score=211.21 Aligned_cols=136 Identities=25% Similarity=0.360 Sum_probs=125.2
Q ss_pred CCCChhhhhcccC------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977 1 YLNDPEATAATID------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74 (145)
Q Consensus 1 Y~~~~~~t~~~~~------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~ 74 (145)
||++|+.|++.|. +++||+|||+|++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 8999999999983 3469999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHH
Q 038977 75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKL 138 (145)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~ 138 (145)
...++.++++++... ..+.+++.++++++|+.+++|..++++++||+|++||++|++|++..
T Consensus 466 ~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 466 HQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp TTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 888888888888764 35678999999999999999999999999999999999999997643
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.98 E-value=5e-34 Score=217.32 Aligned_cols=140 Identities=36% Similarity=0.522 Sum_probs=36.1
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeec--CCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRV--KEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG 78 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~--d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~ 78 (145)
||++|+.|.+.|. +|||+|||++++|++|+++++||. +|+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus 361 Y~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~ 439 (509)
T 3ivr_A 361 YWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS 439 (509)
T ss_dssp ETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC------------------------------------------
T ss_pred ccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccC
Confidence 8999999999996 999999999999999999999999 9999999999999999999999999999999999998888
Q ss_pred ceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 79 EVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
+.+++++++.++...+.+++.+.++++|+.+++|..++++++||+|++||++|++|++++.+.
T Consensus 440 ~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 440 EAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ---------------------------------------------------------------
T ss_pred cEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 888888888777667778999999999999999999999999999999999999999988764
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.97 E-value=2.9e-32 Score=213.53 Aligned_cols=141 Identities=28% Similarity=0.412 Sum_probs=125.3
Q ss_pred CCCChhhhhcccC--CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977 1 YLNDPEATAATID--VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG 78 (145)
Q Consensus 1 Y~~~~~~t~~~~~--~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~ 78 (145)
||++|+.+.+.|. .+|||+|||++++|++|+++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...+
T Consensus 486 y~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g 565 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 565 (663)
T ss_dssp ETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTS
T ss_pred cccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCC
Confidence 8999999988763 38999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEEeCCCCc---c-------CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 79 EVPVAFVVRSNGFE---L-------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 79 ~~~~~~v~~~~~~~---~-------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
+.++++|++..+.. . ..+++.+.+++.++.+++|..+++++.||+|++||++|+.|++.+..+
T Consensus 566 ~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 566 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 89999998876543 2 247899999999999999999999999999999999999999877654
No 22
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.97 E-value=1.2e-33 Score=217.02 Aligned_cols=142 Identities=48% Similarity=0.772 Sum_probs=34.2
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 401 Y~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~ 480 (550)
T 3rix_A 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 480 (550)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------------------
T ss_pred hcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCce
Confidence 89999999999988999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCce-EEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLH-KVHFVHAIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
+++++++..+...+.+++.++++++++.+..|. .++++++||+|++||++|++|++++.+..
T Consensus 481 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 481 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 899988887767777899999999999887665 69999999999999999999999987654
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.97 E-value=2.9e-33 Score=226.69 Aligned_cols=142 Identities=66% Similarity=1.077 Sum_probs=39.3
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|++.|..+|||+|||++++|++|.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.
T Consensus 443 Y~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~ 522 (979)
T 3tsy_A 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEV 522 (979)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------
T ss_pred ccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcE
Confidence 89999999999988999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHccC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
++++++...+...+.+++.++++++++.+++|..++++++||+|++||++|++|++++.+++
T Consensus 523 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 523 PVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 88888877766677789999999999999999999999999999999999999999987654
No 24
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.97 E-value=4.2e-33 Score=214.88 Aligned_cols=137 Identities=28% Similarity=0.472 Sum_probs=34.3
Q ss_pred CCCChhhhhcccCC--------CCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEee
Q 038977 1 YLNDPEATAATIDV--------EGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQ 72 (145)
Q Consensus 1 Y~~~~~~t~~~~~~--------~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~ 72 (145)
||++|+.|+++|.. +|||+|||+|++|++|.++++||+||+||++|++|+|.+||+.|.++|.|.++++++.
T Consensus 423 Y~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~ 502 (570)
T 4gr5_A 423 YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ 502 (570)
T ss_dssp ETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----------------------------------
T ss_pred cCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEe
Confidence 89999999999843 3799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCC-CccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977 73 KDEVAGEVPVAFVVRSNG-FELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK 137 (145)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~ 137 (145)
++..+++.++++++.... ...+.+++.++++++++.+++|..++++++||+|++||++|++|++.
T Consensus 503 ~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 503 DSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ------------------------------------------------------------------
T ss_pred eCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 888788888888776543 34566889999999999999999999999999999999999999864
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.97 E-value=3.7e-31 Score=202.33 Aligned_cols=134 Identities=28% Similarity=0.374 Sum_probs=117.9
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.|.+.|. +|||+|||+++++++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++++++. +...++.
T Consensus 392 Y~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~ 469 (529)
T 2v7b_A 392 YWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVK 469 (529)
T ss_dssp BTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEE
T ss_pred cCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceE
Confidence 8999999999996 8999999999999999999999999999999999999999999999999999999998 5556677
Q ss_pred eEEEEEeCCCCcc---CHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHH
Q 038977 81 PVAFVVRSNGFEL---TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIA 136 (145)
Q Consensus 81 ~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~ 136 (145)
+++++++..+... ..+++.++++++|+.+++|..++++++||+|++||++|++|++
T Consensus 470 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 470 TRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 8888887665321 3467999999999999999999999999999999999999985
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.97 E-value=3e-31 Score=206.45 Aligned_cols=134 Identities=22% Similarity=0.340 Sum_probs=110.8
Q ss_pred CCCChhhhhcccCCC-------CeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeec
Q 038977 1 YLNDPEATAATIDVE-------GLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQK 73 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~-------~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~ 73 (145)
|||+|+.|++.|..+ +||+|||++++++||.++++||+||+||++|.+|+|.+||+.|.++|.|.++++++.+
T Consensus 374 Y~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~ 453 (620)
T 4dg8_A 374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE 453 (620)
T ss_dssp ETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred cCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEe
Confidence 899999999999532 7999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 74 DEVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
+...+..++.++ ... ..+.+.+.++|+.+++|..+++++.+|+|++||++|++|++.+.+.
T Consensus 454 ~~~~~~lv~~~~-~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 454 RNGVKQLLCAWT-GKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp ETTEEEEEEEEE-ECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred CCCceEEEEEEe-cCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 764444444433 221 1234556778999999999999999999999999999999877553
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.97 E-value=2.5e-30 Score=214.34 Aligned_cols=135 Identities=26% Similarity=0.399 Sum_probs=124.3
Q ss_pred CCCChhhhhcccC------CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecC
Q 038977 1 YLNDPEATAATID------VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKD 74 (145)
Q Consensus 1 Y~~~~~~t~~~~~------~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~ 74 (145)
|||+|+.|+++|. +++||+|||++++++||.++++||+|++||++|.+|+|.+||..|.++|+|.++++++.++
T Consensus 817 Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~ 896 (1304)
T 2vsq_A 817 YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRH 896 (1304)
T ss_dssp BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEec
Confidence 9999999999993 3569999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCceeEEEEEeCCCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHH
Q 038977 75 EVAGEVPVAFVVRSNGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAK 137 (145)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~ 137 (145)
..++..++++++... ..+.+++.+++++.||.|++|..+++++.||+|++||++|++|.+.
T Consensus 897 ~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 897 ESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp SSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred CCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 877788888887654 4567899999999999999999999999999999999999988653
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.96 E-value=4.6e-31 Score=203.06 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCCChhhhhcccC-CCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC-CCcceEEEEeecCCCCC
Q 038977 1 YLNDPEATAATID-VEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH-PSIADATVVPQKDEVAG 78 (145)
Q Consensus 1 Y~~~~~~t~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~-~~v~~~~~~~~~~~~~~ 78 (145)
||++|+.|...+. +++||+|||++++|++|+++++||+||+||++|.+|+|.+||+.|.++ +.+.+++++...++..+
T Consensus 388 Y~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~ 467 (562)
T 3ite_A 388 YLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTS 467 (562)
T ss_dssp ESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred hCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCc
Confidence 8999999987763 234999999999999999999999999999999999999999999998 77788888877777666
Q ss_pred ceeEEEEEeCCCCcc-------------CHHHHHHHHHhccccccCceEEEEeccCCCC-CCCcccHHHHHHHHHc
Q 038977 79 EVPVAFVVRSNGFEL-------------TEEAIKEYIAKQVVFYKRLHKVHFVHAIPKS-PSGKILRKDLIAKLAS 140 (145)
Q Consensus 79 ~~~~~~v~~~~~~~~-------------~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t-~~gK~~r~~l~~~~~~ 140 (145)
+..+++++...+... ..+++.++++++|+.+++|+.++++++||+| ++||++|++|++++.+
T Consensus 468 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 468 KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 655544443322221 1347899999999999999999999999998 9999999999998864
No 29
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.96 E-value=8.1e-29 Score=181.75 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=108.3
Q ss_pred CCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHh---cCCCcceEEEE-eecCCCCCceeEEEEEeC
Q 038977 13 DVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL---SHPSIADATVV-PQKDEVAGEVPVAFVVRS 88 (145)
Q Consensus 13 ~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~---~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~ 88 (145)
..+|||+|||++++|++| ++++||+||+||++|++|+|.+||+.|. .+|.|.+++++ ..++...++.+++++...
T Consensus 225 ~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~ 303 (358)
T 4gs5_A 225 TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENA 303 (358)
T ss_dssp GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESC
T ss_pred ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECC
Confidence 458999999999999988 6677999999999999999999998775 46889887765 666777777877777654
Q ss_pred CCCccCHHHHHHHHHhccccccCceEEEEeccCCCCCCCcccHHHHHHHHHcc
Q 038977 89 NGFELTEEAIKEYIAKQVVFYKRLHKVHFVHAIPKSPSGKILRKDLIAKLASS 141 (145)
Q Consensus 89 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~~~ 141 (145)
. .....+++.++++++|+.+++|+.++++++||+|++||++|++|++++.+.
T Consensus 304 ~-~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 304 M-PEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp C-CHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred C-CCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 3 344567899999999999999999999999999999999999999988764
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.96 E-value=6.5e-29 Score=191.14 Aligned_cols=138 Identities=20% Similarity=0.347 Sum_probs=116.8
Q ss_pred CCCChhhhhcccCCCCeeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCce
Q 038977 1 YLNDPEATAATIDVEGLLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEV 80 (145)
Q Consensus 1 Y~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~ 80 (145)
||++|+.+...+ .+|||+|||++++ ++|.++++||.||+||++|.+|+|.+||+.|.++|.|.++.+++...... .
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~--~ 500 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE--K 500 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTS--C
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCc--c
Confidence 899999998877 4899999999999 79999999999999999999999999999999999999877776665532 3
Q ss_pred eEEEEEeCCCCccCHHHHHHHHHhcc-ccccCceEEEEec--cCCCCCCCcccHHHHHHHHHccC
Q 038977 81 PVAFVVRSNGFELTEEAIKEYIAKQV-VFYKRLHKVHFVH--AIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 81 ~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~~~v~--~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
..+++...........++.+.+.+.+ +.++.|..+.+++ .||+|++||++|++|++++.+.+
T Consensus 501 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 565 (576)
T 3gqw_A 501 IILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAY 565 (576)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHH
T ss_pred EEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHh
Confidence 44444444433445567888888888 7899999988887 89999999999999999998765
No 31
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.95 E-value=2.3e-29 Score=194.29 Aligned_cols=140 Identities=24% Similarity=0.342 Sum_probs=118.1
Q ss_pred CCCChhhhhcccCC------CC--eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHH-hcCCCcc--eEEE
Q 038977 1 YLNDPEATAATIDV------EG--LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL-LSHPSIA--DATV 69 (145)
Q Consensus 1 Y~~~~~~t~~~~~~------~~--~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l-~~~~~v~--~~~~ 69 (145)
||++|+.|++.|.. +| ||+|||+|++| +|.++++||+||+||++|.+|+|.+||+.| ..++.|. ++.+
T Consensus 413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v 491 (590)
T 3kxw_A 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAA 491 (590)
T ss_dssp BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEE
T ss_pred ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEE
Confidence 99999999999953 14 99999999998 999999999999999999999999999999 7789998 7888
Q ss_pred EeecCCCCCceeEEEEEeCCCC--ccCHHHHHHHHHhcccc-ccCce-EEEEe--ccCCCCCCCcccHHHHHHHHHccC
Q 038977 70 VPQKDEVAGEVPVAFVVRSNGF--ELTEEAIKEYIAKQVVF-YKRLH-KVHFV--HAIPKSPSGKILRKDLIAKLASSM 142 (145)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~~~~v--~~~p~t~~gK~~r~~l~~~~~~~~ 142 (145)
++.++.. ++.++++++...+. ..+.+++.+.+++.++. +..|. .+.++ +.||+|++||++|++|++++.++.
T Consensus 492 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~ 569 (590)
T 3kxw_A 492 FVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKT 569 (590)
T ss_dssp EEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTC
T ss_pred EEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCC
Confidence 8887665 56777777776653 34567888999998885 77775 56665 799999999999999999997653
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.90 E-value=3.9e-24 Score=160.10 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=100.7
Q ss_pred hhcccCCCCeeecCceEEEcCCC------e---EEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCC
Q 038977 8 TAATIDVEGLLHTGDIGYVDHDD------E---VFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAG 78 (145)
Q Consensus 8 t~~~~~~~~~~~TGDl~~~~~~g------~---l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~ 78 (145)
+...| ..+||+|||+++++++| . ++++||.||+||++|.+|+|.+||+.|.++|.|.++++++..+...+
T Consensus 292 ~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~ 370 (436)
T 3qov_A 292 DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ 370 (436)
T ss_dssp SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence 34455 47899999999999998 4 69999999999999999999999999999999999999988887777
Q ss_pred ceeEEEEEeCCCCccC----HHHHHHHHHhccccc-cCceEEEEec--cCCCCCCCcccHH
Q 038977 79 EVPVAFVVRSNGFELT----EEAIKEYIAKQVVFY-KRLHKVHFVH--AIPKSPSGKILRK 132 (145)
Q Consensus 79 ~~~~~~v~~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~v~--~~p~t~~gK~~r~ 132 (145)
+.+++++++. +...+ .+++.+.+++.++.+ +.|..+.+++ .||+|+ ||++|.
T Consensus 371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred cEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 8888998887 55444 578899999999999 8999999998 999999 999874
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.90 E-value=3.5e-24 Score=160.62 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=104.8
Q ss_pred hhcccCCCCeeecCceEEEcCC-CeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCcee
Q 038977 8 TAATIDVEGLLHTGDIGYVDHD-DEV-----FIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVP 81 (145)
Q Consensus 8 t~~~~~~~~~~~TGDl~~~~~~-g~l-----~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~ 81 (145)
|...| ..+||+|||+++++++ |.+ ++.||.||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.+
T Consensus 299 t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~ 377 (443)
T 2y4o_A 299 TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRL 377 (443)
T ss_dssp SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEE
T ss_pred CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceE
Confidence 34455 4789999999999999 986 8999999999999999999999999999999999888877666556778
Q ss_pred EEEEEeCC--C---CccCHHHHHHHHHhcccccc-CceEEEEe--ccCCCCCCCcccHHH
Q 038977 82 VAFVVRSN--G---FELTEEAIKEYIAKQVVFYK-RLHKVHFV--HAIPKSPSGKILRKD 133 (145)
Q Consensus 82 ~~~v~~~~--~---~~~~~~~l~~~l~~~l~~~~-~p~~~~~v--~~~p~t~~gK~~r~~ 133 (145)
++++++.. + ...+.+++.+.+++.++.++ .|..+.++ ++||+|++||++|..
T Consensus 378 ~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 378 DLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 88887764 2 22345788999999998874 88888888 599999999999864
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.89 E-value=9.6e-24 Score=158.01 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=104.6
Q ss_pred hhcccCCCCeeecCceEEEcC-CCeE-----EEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCcee
Q 038977 8 TAATIDVEGLLHTGDIGYVDH-DDEV-----FIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVP 81 (145)
Q Consensus 8 t~~~~~~~~~~~TGDl~~~~~-~g~l-----~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~ 81 (145)
|.+.| ..+||+|||++++++ +|.+ ++.||.||+|+++|.+|+|.+||+.|.++|.|.++++++.++...++.+
T Consensus 297 t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l 375 (437)
T 2y27_A 297 TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL 375 (437)
T ss_dssp SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEE
T ss_pred CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceE
Confidence 34455 478999999999999 6985 9999999999999999999999999999999998888877766666788
Q ss_pred EEEEEeCCCCc---cCHHHHHHHHHhccccc-cCceEEEEe--ccCCCCCCCcccHHH
Q 038977 82 VAFVVRSNGFE---LTEEAIKEYIAKQVVFY-KRLHKVHFV--HAIPKSPSGKILRKD 133 (145)
Q Consensus 82 ~~~v~~~~~~~---~~~~~l~~~l~~~l~~~-~~p~~~~~v--~~~p~t~~gK~~r~~ 133 (145)
++++++..+.. .+.+++.+.+++.++.+ ..|..+.++ ++||+|+ ||++|..
T Consensus 376 ~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 376 TLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 88888776543 34478899999999988 588888888 5999999 9999853
No 35
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.76 E-value=3.2e-18 Score=105.68 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=71.4
Q ss_pred eecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCc----cCHHHHHHHHHhccc-ccc
Q 038977 36 DRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFE----LTEEAIKEYIAKQVV-FYK 110 (145)
Q Consensus 36 GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~l~~~l~-~~~ 110 (145)
||.||+|+++|.+|+|.+||+.+.++|+|..+++++.++..+++.+.+++++ .+.. .+.+++.+.+.+.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998887777766677788888887 5432 234566666666654 344
Q ss_pred CceEEEEec--cCCCCCCCcccH
Q 038977 111 RLHKVHFVH--AIPKSPSGKILR 131 (145)
Q Consensus 111 ~p~~~~~v~--~~p~t~~gK~~r 131 (145)
.+..+.+++ .||+| +||++|
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCC
T ss_pred CceEEEEECCCCccCC-CCceEE
Confidence 455788886 89999 999986
No 36
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.75 E-value=5.6e-18 Score=104.53 Aligned_cols=95 Identities=24% Similarity=0.323 Sum_probs=72.9
Q ss_pred eecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEeecCCCCCceeEEEEEeCCCCccCH---HHHHHHHHhccccc-cC
Q 038977 36 DRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQKDEVAGEVPVAFVVRSNGFELTE---EAIKEYIAKQVVFY-KR 111 (145)
Q Consensus 36 GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~-~~ 111 (145)
.|+||||+++|.||+|.+||+.+.++|+|.++.+++.++..+++.+.+++....+...+. +++.+.+.+.+... ..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 389999999999999999999999999999999999988888888888888877654443 45555666655443 23
Q ss_pred ceEEEEe--ccCCCCCCCcccH
Q 038977 112 LHKVHFV--HAIPKSPSGKILR 131 (145)
Q Consensus 112 p~~~~~v--~~~p~t~~gK~~r 131 (145)
+..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 4456666 579999 799987
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.69 E-value=9e-05 Score=57.61 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=39.8
Q ss_pred eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977 17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60 (145)
Q Consensus 17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~ 60 (145)
-|++||+++++. ...+.|.||.++++++.|+++++.+|++++.+
T Consensus 411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 389999999963 46899999999999999999999999999884
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.54 E-value=4.6e-05 Score=59.02 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=40.6
Q ss_pred eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q 038977 17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH 61 (145)
Q Consensus 17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~ 61 (145)
.|++||+++++. ...+.|.||.++++++.|+++++.++++++.+.
T Consensus 399 RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 399 RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 489999999975 357999999999999999999999999999854
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.54 E-value=0.00038 Score=53.88 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=39.4
Q ss_pred eeecCceEEEcC----CCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977 17 LLHTGDIGYVDH----DDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60 (145)
Q Consensus 17 ~~~TGDl~~~~~----~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~ 60 (145)
.|++||+++++. ...+.|.||.++++++.|+++++.+|++++..
T Consensus 406 RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 406 RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 499999999964 25799999999999999999999999999875
No 40
>4dcz_A DNAJ-like protein Mg200; dimer, intra-domain symmetry AXIS, unknown function; 2.90A {Mycoplasma genitalium}
Probab=45.38 E-value=33 Score=19.18 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=6.7
Q ss_pred ceEEEcCCCeEEEEe
Q 038977 22 DIGYVDHDDEVFIVD 36 (145)
Q Consensus 22 Dl~~~~~~g~l~~~G 36 (145)
+.|++|++|.+...|
T Consensus 54 ~YGyYDe~GEWVW~G 68 (92)
T 4dcz_A 54 RYGYFDETGDWSWKG 68 (92)
T ss_dssp TTEEECTTSCEEESE
T ss_pred ccccccCCCCEEEEe
Confidence 344455555444333
No 41
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=39.74 E-value=40 Score=25.95 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=37.2
Q ss_pred eecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977 18 LHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60 (145)
Q Consensus 18 ~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~ 60 (145)
..-||..++ |.|+++.+-...|.|-++|-.++...|+..+.-
T Consensus 370 l~pGEtlfI-PsGW~HaV~tleDSIaiggNFl~~~nl~~qlri 411 (528)
T 3pur_A 370 IKEGQTLLI-PAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRV 411 (528)
T ss_dssp EETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHH
T ss_pred ECCCCEEEe-cCCceEEEecCCCeEEEcCcccchhhHHHHHHH
Confidence 457999999 999999999999999999999998888887763
No 42
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=39.22 E-value=52 Score=19.26 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCCCeeecCceEEE-cCCC-eEEEEeecCCeEE
Q 038977 13 DVEGLLHTGDIGYV-DHDD-EVFIVDRVKEIIK 43 (145)
Q Consensus 13 ~~~~~~~TGDl~~~-~~~g-~l~~~GR~d~~i~ 43 (145)
...+|+-|+|=..+ +.+| .+.|..|.++.-.
T Consensus 54 ~p~~W~ptPDGi~L~~~dGs~l~ff~r~~~~y~ 86 (101)
T 1smp_I 54 APVGWRPTPDGLTLTQADGSAVAFFSRNRDRYE 86 (101)
T ss_dssp CCCEEEECSSEEEEECTTSCEEEEEEEETTEEE
T ss_pred CCcccccCCCEEEEEcCCCCEEEEecccCCcce
Confidence 34789999998887 5555 5888899988433
No 43
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=35.71 E-value=35 Score=19.76 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.0
Q ss_pred eecCceEEEcCC-CeEEEEeecC
Q 038977 18 LHTGDIGYVDHD-DEVFIVDRVK 39 (145)
Q Consensus 18 ~~TGDl~~~~~~-g~l~~~GR~d 39 (145)
..-||..++|.+ |.+.-+||.+
T Consensus 63 V~~GDVI~Id~~sG~V~klGRs~ 85 (95)
T 2cqa_A 63 VQAGDVITIDKATGKISKLGRSF 85 (95)
T ss_dssp CCTTSEEEEETTTTEEEEEECCC
T ss_pred ceeCCEEEEEccCCEEEEEEEee
Confidence 567999999886 8999999985
No 44
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=34.67 E-value=70 Score=24.04 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=36.8
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL 59 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~ 59 (145)
-...||..++ |.|+++.+--.++.|-++|-.++...|+..+.
T Consensus 304 ~l~pGetlfI-PsGWwH~V~nledsIai~~NF~~~~nl~~~l~ 345 (447)
T 3kv4_A 304 SVKQGQTLFI-PTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 345 (447)
T ss_dssp EEETTCEEEE-CTTCEEEEEESSCEEEEEEEECCSTTHHHHHH
T ss_pred EECCCcEEec-CCCCeEEEecCCCEEEEccccccccCHHHHHH
Confidence 3678999999 99999999999999999999988887777665
No 45
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=32.88 E-value=49 Score=24.23 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=37.5
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~ 60 (145)
-...||..++ |.|+++.+--.++.|-++|-.++...++..+..
T Consensus 220 ~l~pGEtLfI-PsGWwH~V~nledSIai~~NFl~~~nl~~~l~~ 262 (371)
T 3k3o_A 220 SVKQGQTLFI-PTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKA 262 (371)
T ss_dssp EEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHH
T ss_pred EECCCcEEEe-CCCCeEEEecCCCeEEECCcccchhhHHHHHHH
Confidence 3568999999 999999999899999999999998888887763
No 46
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=32.51 E-value=48 Score=24.48 Aligned_cols=44 Identities=9% Similarity=0.224 Sum_probs=37.9
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH 61 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~ 61 (145)
-...||..++ |.|+++.+--.+|.|-++|-.++...|+..+...
T Consensus 247 ~l~pGEtlfI-PsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~ 290 (392)
T 3pua_A 247 IVKQGQTLFI-PSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAY 290 (392)
T ss_dssp EEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHH
T ss_pred EECCCcEEee-CCCceEEEecCCCEEEEcCcccChhhHHHHHHHH
Confidence 3568999999 9999999999999999999999988888877643
No 47
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=30.51 E-value=64 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=36.9
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL 59 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~ 59 (145)
-..-||..++ |.|+++.+--.++.|-++|-.++...|+..+.
T Consensus 339 ~l~pGe~lfI-PsGWwH~V~nledsIai~~NF~~~~nl~~~l~ 380 (488)
T 3kv5_D 339 VVKQGHTLFV-PTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 380 (488)
T ss_dssp EEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHH
T ss_pred eeCCCCEEEe-CCCceEEeeCCCCeEEEccccCCccCHHHHHH
Confidence 3578999999 99999999999999999999998888887765
No 48
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=29.96 E-value=58 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=36.3
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHh
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLL 59 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~ 59 (145)
-...||..++ |.|+++.+--.++.|-++|-.++...++..+.
T Consensus 248 ~l~pGe~lfI-PsGW~H~V~nledSIai~~NFl~~~nl~~~l~ 289 (397)
T 3kv9_A 248 VVKQGHTLFV-PTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 289 (397)
T ss_dssp EEETTCEEEE-CTTCEEEEEEEEEEEEEEEEECCSTTHHHHHH
T ss_pred EECCCCEEEe-CCCCeEEccCCcCeEEECCcccCchhHHHHHH
Confidence 3578999999 99999999988999999999998888877664
No 49
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=29.70 E-value=74 Score=21.96 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCeeec-CceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEee
Q 038977 15 EGLLHT-GDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVPQ 72 (145)
Q Consensus 15 ~~~~~T-GDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~ 72 (145)
.-++|. +|-..++++|++-+.-+-.. --.|.+++..|...|+|.+..++..
T Consensus 182 ~~~lR~~~~gp~vTDnGN~IlD~~f~~-------i~dp~~l~~~l~~i~GVVe~GLF~~ 233 (255)
T 3hhe_A 182 EITLRMNGDDPFKTDGGHFIFDAFWGR-------ILQPKLLSEALLAIPGVVEHGLFLG 233 (255)
T ss_dssp CEEECEETTEECCCTTSCEEEEECCSC-------CSCHHHHHHHHHTSTTEEEESEECS
T ss_pred eEEEeeCCCCcEEcCCCCEEEEeeCCC-------cCCHHHHHHHHhcCCCEeeeccccc
Confidence 446775 55566788888777544332 2378999999999999998888754
No 50
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=28.56 E-value=68 Score=16.70 Aligned_cols=30 Identities=13% Similarity=-0.044 Sum_probs=19.8
Q ss_pred EEEcCCCeEEEEeecCCeEEeCc---EEeChHHHHHHHhcC
Q 038977 24 GYVDHDDEVFIVDRVKEIIKFKG---FQVPPAEIEALLLSH 61 (145)
Q Consensus 24 ~~~~~~g~l~~~GR~d~~i~~~G---~~v~~~~ie~~l~~~ 61 (145)
..++.+|.+++- ..| ..++..+++..|.+.
T Consensus 7 v~I~~dG~~~~~--------~~~~~~~~v~~~~L~~~l~~~ 39 (74)
T 2jwk_A 7 LEVAGIGKYAIS--------IGGERQEGLTEEMVTQLSRQE 39 (74)
T ss_dssp EEECSSSCEEEE--------ETTEEEEEECHHHHHHHHHHH
T ss_pred EEEecCccEEEe--------cCCCcCcccCHHHHHHHHHHH
Confidence 345666766652 126 888989998888654
No 51
>1z9i_A Epidermal growth factor receptor; juxtamembrane structure EGFR micelle, transferase; NMR {Homo sapiens}
Probab=28.18 E-value=28 Score=17.74 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=11.3
Q ss_pred cCCCCCCC-cccHHHHH
Q 038977 120 AIPKSPSG-KILRKDLI 135 (145)
Q Consensus 120 ~~p~t~~g-K~~r~~l~ 135 (145)
.-|++||| |.+...|+
T Consensus 21 ~EPL~Psg~~pN~a~lR 37 (53)
T 1z9i_A 21 VEPLTPSGEAPNQALLR 37 (53)
T ss_dssp SSSSCSSSSCHHHHHHH
T ss_pred cCcCCcCCCCcchHHHh
Confidence 34999998 66666655
No 52
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=27.70 E-value=46 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=24.9
Q ss_pred eEEeCcE-EeChHHHHHHHhcCCCcceEEEEeecCC
Q 038977 41 IIKFKGF-QVPPAEIEALLLSHPSIADATVVPQKDE 75 (145)
Q Consensus 41 ~i~~~G~-~v~~~~ie~~l~~~~~v~~~~~~~~~~~ 75 (145)
-|+++|. +|...++.+.+... +..++..+.++.+
T Consensus 13 GINVGG~nkv~MadLr~~l~~l-Gf~~V~TyI~SGN 47 (183)
T 2hiy_A 13 GINVGGKNKVVMAELRQELTNL-GLEKVESYINSGN 47 (183)
T ss_dssp SCSCC-CCCCCHHHHHHHHHHH-TCEEEEEETTTTE
T ss_pred ceecCCCCcccHHHHHHHHHHc-CCccceEEEecCC
Confidence 4778874 69999999999987 5677777755444
No 53
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=27.44 E-value=65 Score=17.98 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=16.7
Q ss_pred CCeEEeCcEEeChHHHHHHHhcC
Q 038977 39 KEIIKFKGFQVPPAEIEALLLSH 61 (145)
Q Consensus 39 d~~i~~~G~~v~~~~ie~~l~~~ 61 (145)
++.+.++|..+...+++..|.+.
T Consensus 29 dg~i~~~~~~v~~~~L~~~l~~~ 51 (99)
T 2pfu_A 29 DNSMFIGNDPVTDETMITALNAL 51 (99)
T ss_dssp TTEEEETTEEECSSSHHHHHHHH
T ss_pred CCCEEECCEecCHHHHHHHHHHH
Confidence 33444578889988898888764
No 54
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=24.52 E-value=92 Score=19.61 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=22.6
Q ss_pred ecCce--EEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcC
Q 038977 19 HTGDI--GYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSH 61 (145)
Q Consensus 19 ~TGDl--~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~ 61 (145)
..||+ .+++.||.+++ .|..|.. .+...+.++
T Consensus 20 ~cgd~dli~I~~dG~W~y----------~G~pI~r-~lVrLFssi 53 (150)
T 2ra9_A 20 LCSEVPLFDINALGDWTY----------LGTSLPA-KFAKLFASI 53 (150)
T ss_dssp --CCCCSEEECTTSCEEE----------TTEECCH-HHHHHHHTT
T ss_pred CccCcCceEECCCCcEEE----------CCccccH-HHHHHHHHh
Confidence 35664 58999999998 5677775 677777765
No 55
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=23.37 E-value=48 Score=18.53 Aligned_cols=44 Identities=7% Similarity=-0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHhccccc--cCceEEEEeccCCCCCCCcccHHHHHHHHH
Q 038977 96 EAIKEYIAKQVVFY--KRLHKVHFVHAIPKSPSGKILRKDLIAKLA 139 (145)
Q Consensus 96 ~~l~~~l~~~l~~~--~~p~~~~~v~~~p~t~~gK~~r~~l~~~~~ 139 (145)
++|.+.+.+++|.. .+-.+.-.-+.+..+...|-++..+.+.++
T Consensus 23 ~EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV~g~~k~dKe~i~eiLq 68 (81)
T 1ghh_A 23 GELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKQRISEILQ 68 (81)
T ss_dssp HHHHHHHHHHCSSSCCEEEEEEESSCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCceEEEeecCCCceeecCCChhHHHHHHHHHH
Confidence 56677777777765 222222223566666666667777666554
No 56
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=22.60 E-value=85 Score=20.99 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=33.2
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEe
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVP 71 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~ 71 (145)
-+|.| .++++|++-+.-+-. .--.|..++..|...|+|.+..++.
T Consensus 156 ~~R~g---~vTdnGn~IlD~~~~-------~i~~p~~l~~~l~~i~GVve~GlF~ 200 (219)
T 1m0s_A 156 EYREG---VVTDNGNVILDVHNF-------SILNPVEIEKELNNVAGVVTNGIFA 200 (219)
T ss_dssp EECTT---CCCTTSCEEEEEESC-------CCSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EeeCc---eEcCCCCEEEEecCC-------CCCCHHHHHHHHhcCCCeeeeccEe
Confidence 35554 677888876644432 2237999999999999999998886
No 57
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=22.31 E-value=88 Score=17.69 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=17.5
Q ss_pred CCeEEeCcEEeC---hHHHHHHHhcC
Q 038977 39 KEIIKFKGFQVP---PAEIEALLLSH 61 (145)
Q Consensus 39 d~~i~~~G~~v~---~~~ie~~l~~~ 61 (145)
|.++.++|..|. ..++.+.+...
T Consensus 59 D~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 59 DEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 445556999997 78888888765
No 58
>1jiw_I Proteinase inhibitor; pseudomonas aeruginosa alkaline protease inhibitor, hydrolase/hyrolase inhibitor complex; 1.74A {Pseudomonas aeruginosa} SCOP: b.61.2.1 PDB: 2rn4_A
Probab=21.74 E-value=1.3e+02 Score=17.76 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=21.9
Q ss_pred CCCCeeecCceEEE-cCCC-eEEEEeecCC
Q 038977 13 DVEGLLHTGDIGYV-DHDD-EVFIVDRVKE 40 (145)
Q Consensus 13 ~~~~~~~TGDl~~~-~~~g-~l~~~GR~d~ 40 (145)
...+|+-|+|=..+ +.+| .+.|..|.++
T Consensus 57 ~p~~W~ptPdGi~L~~~dGs~l~ff~r~~~ 86 (106)
T 1jiw_I 57 EPRAWRPTPAGIALLERGGLTLMLLGRQGE 86 (106)
T ss_dssp CCCEEEEETTEEEEECTTSCEEEEEEEEET
T ss_pred CCcccccCCCeEEEEcCCCCEEEeeeecCC
Confidence 44789999998887 4455 5888889887
No 59
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=20.82 E-value=1.2e+02 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=32.8
Q ss_pred eecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHH
Q 038977 18 LHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALL 58 (145)
Q Consensus 18 ~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l 58 (145)
..-||+.++ |.|+++.+--.++.|-++|-.++...+...+
T Consensus 270 l~pGE~LfI-PsGWwH~V~nledsIait~NF~~~~nl~~~l 309 (451)
T 2yu1_A 270 LKQGYTFVI-PSGWIHAVYTPTDTLVFGGNFLHSFNIPMQL 309 (451)
T ss_dssp ECTTCEEEE-CTTCEEEEECSSCEEEEEEEECCSSSHHHHH
T ss_pred ECCCcEEEe-CCCceEEEecCCCeEEEeeeeCCcccHHHHH
Confidence 558999999 9999999988889999988888766655544
No 60
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=20.76 E-value=1.1e+02 Score=20.39 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=33.0
Q ss_pred eeecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhcCCCcceEEEEe
Q 038977 17 LLHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLSHPSIADATVVP 71 (145)
Q Consensus 17 ~~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~ 71 (145)
-+|.| .++++|++-+.-+-. .--.|..++..|...|+|.+..++.
T Consensus 155 ~~R~g---~vTdnGn~IlD~~~~-------~i~~p~~l~~~l~~i~GVve~GlF~ 199 (219)
T 1o8b_A 155 EYRQG---VVTDNGNVILDVHGM-------EILDPIAMENAINAIPGVVTVGLFA 199 (219)
T ss_dssp EECTT---CCCTTSCEEEEEESC-------CBSCHHHHHHHHHTSTTEEEESEEC
T ss_pred EeeCc---eEeCCCCEEEEeeCC-------CCCCHHHHHHHHhcCCCcceeeeEe
Confidence 35554 677888876644432 2236999999999999999988886
No 61
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=20.73 E-value=1.9e+02 Score=21.35 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=37.0
Q ss_pred eecCceEEEcCCCeEEEEeecCCeEEeCcEEeChHHHHHHHhc
Q 038977 18 LHTGDIGYVDHDDEVFIVDRVKEIIKFKGFQVPPAEIEALLLS 60 (145)
Q Consensus 18 ~~TGDl~~~~~~g~l~~~GR~d~~i~~~G~~v~~~~ie~~l~~ 60 (145)
-..||.+++ |.|+.+=+--..+-|++.--.++|..|...+.-
T Consensus 297 Q~~Geavfi-PaG~~HQV~Nl~~~i~va~df~spe~~~~c~~l 338 (392)
T 2ypd_A 297 QFLGDAIVL-PAGALHQVQNFHSCIQVTEDFVSPEHLVESFHL 338 (392)
T ss_dssp EETTCEEEE-CTTCEEEEEESSEEEEEEEEECCGGGHHHHHHH
T ss_pred EcCCCEEEe-cCCCHHHHhcccchhhHhhhhcChhhHHHHHHH
Confidence 468999999 999988887778899999999999999998754
Done!