Query 038978
Match_columns 260
No_of_seqs 186 out of 744
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 5.8E-53 1.3E-57 406.4 19.1 254 2-257 121-460 (464)
2 PF03016 Exostosin: Exostosin 100.0 1.8E-48 3.9E-53 352.0 15.1 200 9-208 26-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 99.9 1E-21 2.2E-26 187.5 10.5 212 26-251 220-525 (907)
4 KOG1022 Acetylglucosaminyltran 99.7 6.2E-16 1.3E-20 147.5 11.3 197 17-222 118-383 (691)
5 cd03814 GT1_like_2 This family 96.6 0.0051 1.1E-07 55.0 6.6 87 142-231 266-353 (364)
6 cd03820 GT1_amsD_like This fam 96.5 0.0072 1.6E-07 53.0 6.6 88 142-231 252-340 (348)
7 cd03801 GT1_YqgM_like This fam 96.5 0.0077 1.7E-07 52.9 6.6 87 142-231 275-363 (374)
8 cd03822 GT1_ecORF704_like This 96.3 0.01 2.2E-07 53.2 6.6 86 142-231 267-355 (366)
9 PF00534 Glycos_transf_1: Glyc 96.3 0.0045 9.8E-08 50.6 3.7 78 142-222 92-170 (172)
10 cd03809 GT1_mtfB_like This fam 95.7 0.026 5.6E-07 50.5 6.3 85 142-231 272-357 (365)
11 PLN02871 UDP-sulfoquinovose:DA 95.6 0.03 6.5E-07 54.0 6.7 89 142-233 331-423 (465)
12 cd03808 GT1_cap1E_like This fa 95.5 0.042 9.2E-07 48.3 6.9 86 142-230 263-350 (359)
13 cd03794 GT1_wbuB_like This fam 95.4 0.039 8.4E-07 49.1 6.4 87 142-231 294-387 (394)
14 TIGR03449 mycothiol_MshA UDP-N 95.4 0.046 1E-06 51.0 7.0 89 142-233 302-391 (405)
15 cd03819 GT1_WavL_like This fam 95.4 0.047 1E-06 49.2 6.8 87 142-231 263-353 (355)
16 cd04962 GT1_like_5 This family 95.3 0.052 1.1E-06 49.4 7.0 87 142-231 270-358 (371)
17 cd03800 GT1_Sucrose_synthase T 95.2 0.038 8.3E-07 50.6 5.8 87 142-231 302-390 (398)
18 PF13524 Glyco_trans_1_2: Glyc 95.1 0.059 1.3E-06 40.0 5.6 81 146-231 2-84 (92)
19 cd03818 GT1_ExpC_like This fam 95.1 0.067 1.4E-06 50.1 7.0 87 142-231 300-388 (396)
20 TIGR03088 stp2 sugar transfera 95.0 0.064 1.4E-06 49.4 6.7 88 142-232 272-361 (374)
21 cd03821 GT1_Bme6_like This fam 94.9 0.054 1.2E-06 48.1 5.8 85 142-231 281-367 (375)
22 cd05844 GT1_like_7 Glycosyltra 94.9 0.11 2.3E-06 47.3 7.7 87 142-231 264-358 (367)
23 cd03823 GT1_ExpE7_like This fa 94.7 0.071 1.5E-06 47.3 6.0 81 142-225 262-344 (359)
24 cd03798 GT1_wlbH_like This fam 94.6 0.047 1E-06 48.1 4.5 87 142-231 278-364 (377)
25 cd03807 GT1_WbnK_like This fam 94.6 0.073 1.6E-06 47.0 5.7 85 142-231 268-354 (365)
26 PRK09814 beta-1,6-galactofuran 94.6 0.057 1.2E-06 49.8 5.1 82 142-229 225-317 (333)
27 TIGR02149 glgA_Coryne glycogen 94.5 0.088 1.9E-06 48.5 6.1 87 142-231 280-374 (388)
28 cd03799 GT1_amsK_like This is 94.4 0.13 2.7E-06 46.2 6.9 87 142-231 255-349 (355)
29 cd03817 GT1_UGDG_like This fam 94.1 0.17 3.7E-06 44.9 7.2 84 142-229 278-362 (374)
30 cd03825 GT1_wcfI_like This fam 93.9 0.2 4.4E-06 45.0 7.2 86 142-230 264-351 (365)
31 cd04949 GT1_gtfA_like This fam 93.7 0.13 2.8E-06 47.2 5.7 88 142-231 278-366 (372)
32 cd04951 GT1_WbdM_like This fam 93.7 0.22 4.8E-06 44.7 7.0 85 142-231 262-348 (360)
33 TIGR02472 sucr_P_syn_N sucrose 93.3 0.21 4.5E-06 47.8 6.4 86 144-232 342-429 (439)
34 PRK15484 lipopolysaccharide 1, 93.2 0.26 5.6E-06 46.3 6.8 88 142-232 276-366 (380)
35 cd03805 GT1_ALG2_like This fam 93.0 0.31 6.8E-06 44.9 7.1 86 142-231 299-386 (392)
36 cd03804 GT1_wbaZ_like This fam 92.7 0.18 3.8E-06 46.0 4.9 63 142-208 261-323 (351)
37 PRK10307 putative glycosyl tra 92.3 0.098 2.1E-06 49.2 2.7 89 142-233 303-397 (412)
38 TIGR03087 stp1 sugar transfera 92.0 0.52 1.1E-05 44.1 7.3 85 142-232 297-385 (397)
39 PRK15427 colanic acid biosynth 91.9 0.52 1.1E-05 44.8 7.2 87 142-231 298-393 (406)
40 PF00852 Glyco_transf_10: Glyc 91.0 0.14 3.1E-06 48.0 2.3 61 142-208 227-295 (349)
41 cd03806 GT1_ALG11_like This fa 90.9 0.91 2E-05 43.4 7.7 86 142-231 324-414 (419)
42 cd04946 GT1_AmsK_like This fam 90.8 0.77 1.7E-05 43.5 7.1 82 147-231 315-399 (407)
43 cd03811 GT1_WabH_like This fam 90.2 1.3 2.8E-05 38.6 7.5 83 142-227 263-350 (353)
44 cd03802 GT1_AviGT4_like This f 90.1 1.1 2.3E-05 40.0 7.0 62 142-208 243-305 (335)
45 cd03792 GT1_Trehalose_phosphor 90.1 1 2.2E-05 41.6 7.1 86 142-232 273-360 (372)
46 PHA01633 putative glycosyl tra 90.1 0.63 1.4E-05 43.6 5.7 33 142-175 223-255 (335)
47 PRK14099 glycogen synthase; Pr 89.5 0.99 2.2E-05 44.2 6.8 87 142-233 369-468 (485)
48 cd04955 GT1_like_6 This family 89.4 1.2 2.6E-05 40.1 6.9 83 142-231 267-352 (363)
49 TIGR02468 sucrsPsyn_pln sucros 88.6 1.2 2.6E-05 47.7 7.0 85 145-232 574-659 (1050)
50 cd03793 GT1_Glycogen_synthase_ 88.5 0.55 1.2E-05 47.2 4.2 103 142-245 474-588 (590)
51 cd03813 GT1_like_3 This family 88.2 1.1 2.5E-05 43.3 6.2 86 142-230 370-463 (475)
52 PRK09922 UDP-D-galactose:(gluc 87.6 2.9 6.3E-05 38.5 8.3 82 142-225 257-341 (359)
53 PHA01630 putative group 1 glyc 87.3 1.6 3.4E-05 40.6 6.3 32 142-174 209-240 (331)
54 cd03812 GT1_CapH_like This fam 87.1 1.4 3.1E-05 39.5 5.8 63 142-208 266-328 (358)
55 TIGR02095 glgA glycogen/starch 86.7 1.8 3.8E-05 41.8 6.5 86 142-232 365-461 (473)
56 PF13692 Glyco_trans_1_4: Glyc 86.7 0.69 1.5E-05 36.0 3.1 62 142-208 70-132 (135)
57 PLN02949 transferase, transfer 86.2 1.4 3.1E-05 42.9 5.6 87 142-231 354-444 (463)
58 cd03796 GT1_PIG-A_like This fa 86.0 1.1 2.3E-05 42.1 4.5 91 142-237 269-361 (398)
59 PRK14098 glycogen synthase; Pr 85.8 1.9 4.2E-05 42.2 6.3 89 142-233 381-475 (489)
60 PRK00654 glgA glycogen synthas 85.7 2.4 5.2E-05 41.0 6.9 86 142-232 356-451 (466)
61 TIGR02918 accessory Sec system 83.2 3.7 8E-05 40.5 7.0 87 142-231 392-487 (500)
62 cd03795 GT1_like_4 This family 83.0 3.7 8.1E-05 36.6 6.5 86 142-230 263-353 (357)
63 cd03816 GT1_ALG1_like This fam 81.9 3.5 7.6E-05 39.2 6.2 78 142-225 314-399 (415)
64 cd03791 GT1_Glycogen_synthase_ 79.7 4.5 9.8E-05 38.7 6.2 85 142-231 370-464 (476)
65 PLN02939 transferase, transfer 73.8 11 0.00024 40.2 7.4 89 142-234 856-957 (977)
66 PLN00142 sucrose synthase 72.8 10 0.00023 39.7 6.9 87 144-233 668-760 (815)
67 PRK15490 Vi polysaccharide bio 72.7 9.3 0.0002 38.5 6.3 57 142-201 472-528 (578)
68 TIGR01133 murG undecaprenyldip 67.6 11 0.00024 34.0 5.3 77 142-223 250-334 (348)
69 PF00919 UPF0004: Uncharacteri 67.4 6.2 0.00013 30.3 3.0 35 15-49 9-43 (98)
70 PLN02316 synthase/transferase 66.3 9.4 0.0002 41.1 5.1 91 142-234 919-1024(1036)
71 cd04950 GT1_like_1 Glycosyltra 65.1 7.1 0.00015 36.3 3.6 59 142-207 273-336 (373)
72 KOG2619 Fucosyltransferase [Ca 64.3 10 0.00022 36.3 4.4 70 142-216 250-323 (372)
73 KOG1387 Glycosyltransferase [C 62.1 21 0.00046 34.1 6.0 83 142-229 356-444 (465)
74 TIGR02470 sucr_synth sucrose s 61.1 23 0.0005 37.1 6.7 87 144-233 645-737 (784)
75 PRK05749 3-deoxy-D-manno-octul 60.4 18 0.0004 34.0 5.5 82 142-227 319-405 (425)
76 cd03788 GT1_TPS Trehalose-6-Ph 57.9 12 0.00026 36.3 3.8 82 142-228 360-446 (460)
77 COG0438 RfaG Glycosyltransfera 55.4 28 0.0006 29.5 5.4 87 142-231 276-364 (381)
78 PRK10125 putative glycosyl tra 52.7 42 0.00091 31.9 6.6 59 142-204 306-364 (405)
79 PLN02605 monogalactosyldiacylg 52.3 40 0.00086 31.5 6.3 72 142-223 282-361 (382)
80 KOG3185 Translation initiation 47.9 15 0.00032 32.1 2.3 32 142-173 20-51 (245)
81 PRK00726 murG undecaprenyldiph 47.2 44 0.00096 30.4 5.6 77 142-223 252-337 (357)
82 TIGR02400 trehalose_OtsA alpha 45.0 61 0.0013 31.6 6.4 77 142-225 355-438 (456)
83 cd01635 Glycosyltransferase_GT 43.1 27 0.00059 28.4 3.3 33 142-175 181-213 (229)
84 PRK13608 diacylglycerol glucos 42.1 69 0.0015 30.1 6.2 77 142-227 273-355 (391)
85 PRK15179 Vi polysaccharide bio 35.9 86 0.0019 32.5 6.1 84 142-231 591-681 (694)
86 PRK00025 lpxB lipid-A-disaccha 33.1 1.2E+02 0.0026 27.8 6.2 80 142-228 261-359 (380)
87 cd03785 GT1_MurG MurG is an N- 31.0 1.3E+02 0.0027 27.0 5.9 77 142-224 252-338 (350)
88 PF07038 DUF1324: Protein of u 30.0 34 0.00073 23.0 1.4 37 142-181 8-45 (59)
89 COG3651 Uncharacterized protei 28.8 81 0.0018 24.8 3.5 43 117-172 60-102 (125)
90 PF09413 DUF2007: Domain of un 27.9 1.6E+02 0.0035 20.1 4.7 48 159-208 15-65 (67)
91 PF02444 HEV_ORF1: Hepatitis E 26.2 52 0.0011 25.5 2.0 33 142-174 15-47 (114)
92 PRK14335 (dimethylallyl)adenos 25.5 73 0.0016 31.0 3.5 34 15-49 10-44 (455)
93 PLN03063 alpha,alpha-trehalose 25.4 1.6E+02 0.0034 31.0 6.1 81 142-227 375-461 (797)
94 TIGR01639 P_fal_TIGR01639 Plas 24.8 1.3E+02 0.0028 20.9 3.7 41 185-225 2-42 (61)
95 COG2355 Zn-dependent dipeptida 24.8 37 0.0008 31.7 1.2 72 150-222 145-216 (313)
96 cd02133 PA_C5a_like PA_C5a_lik 24.4 2.4E+02 0.0053 22.5 5.9 65 142-206 47-113 (143)
97 cd04936 ACT_AKii-LysC-BS-like_ 24.1 1.3E+02 0.0029 19.4 3.7 43 156-207 17-59 (63)
98 PF09671 Spore_GerQ: Spore coa 24.1 38 0.00082 25.2 0.9 11 82-92 45-55 (81)
99 COG4641 Uncharacterized protei 23.8 2E+02 0.0044 27.5 5.9 70 156-231 277-349 (373)
100 TIGR02728 spore_gerQ spore coa 22.9 41 0.00089 25.0 0.9 10 83-92 44-53 (82)
101 PRK14340 (dimethylallyl)adenos 22.4 90 0.002 30.3 3.4 34 15-49 16-50 (445)
102 PRK14336 (dimethylallyl)adenos 22.2 93 0.002 29.9 3.4 35 15-49 11-45 (418)
103 COG1519 KdtA 3-deoxy-D-manno-o 22.1 1.4E+02 0.003 29.1 4.5 85 147-248 327-415 (419)
104 PRK11865 pyruvate ferredoxin o 22.0 1.5E+02 0.0032 27.5 4.5 79 144-228 208-295 (299)
105 COG0621 MiaB 2-methylthioadeni 22.0 1E+02 0.0022 30.1 3.7 40 210-249 278-322 (437)
106 PRK14333 (dimethylallyl)adenos 21.8 93 0.002 30.1 3.4 34 15-49 16-50 (448)
107 PF07522 DRMBL: DNA repair met 21.4 1.4E+02 0.003 22.9 3.7 20 33-52 4-23 (110)
108 PRK14338 (dimethylallyl)adenos 21.1 1E+02 0.0022 30.0 3.5 34 15-49 30-64 (459)
109 COG0757 AroQ 3-dehydroquinate 20.8 63 0.0014 26.7 1.7 26 146-171 71-96 (146)
110 PF14760 Rnk_N: Rnk N-terminus 20.7 84 0.0018 20.2 1.9 34 190-224 3-39 (42)
111 smart00672 CAP10 Putative lipo 20.4 4.1E+02 0.0088 23.8 7.0 82 142-227 145-231 (256)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=5.8e-53 Score=406.41 Aligned_cols=254 Identities=31% Similarity=0.558 Sum_probs=214.4
Q ss_pred CCCCCCcccCCCCCCCCcchhHHHHHHHHh--cCCcccCCcCCcceEEEecccccccCCC--CC--------HHHHHHHH
Q 038978 2 RKWRGNSSYQTPWKLKRKFAIEGYFFKKIR--ESRFLTTDPAKAHLFFIPVSCHKMRGKF--YN--------WLMVTLKL 69 (260)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~y~~E~~f~~~l~--~s~~~T~dP~eA~lF~vP~~~~~~~~~~--~~--------~~~l~~~~ 69 (260)
.+|++++++.++|+.++||++|.+||++++ .++|||.||+|||+||||||+++...+. .. .+.+++++
T Consensus 121 ~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 200 (464)
T KOG1021|consen 121 HEGNKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDERVNAILRSILQDYI 200 (464)
T ss_pred cCCCCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCcccchHHHHHHHHHH
Confidence 356789999999999999999999999995 7899999999999999999999977431 11 23457788
Q ss_pred HHHHhcCccccCCCCCCeeeecccCCCCcccc--------chhhhhhcceeeee-cCC-CceecCCCCC-----------
Q 038978 70 ISLILKYPYLNRTQGADHFFVTCYDIGVRATE--------GFHNLWKNSIRVLC-SRH-KGVSLPQIIP----------- 128 (260)
Q Consensus 70 ~~l~~~~PyWnR~~G~DH~~~~~~d~g~~~~~--------~~~~~~~~si~~~~-~~~-kDv~iP~~~~----------- 128 (260)
..++++||||||++|+|||++++|+|+..... .++++.+++..... ... +||+||++..
T Consensus 201 ~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~~~~~~~~~~~~ 280 (464)
T KOG1021|consen 201 VALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPYPTIPHPLSPPENSW 280 (464)
T ss_pred HHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCcccCCCccCcCccCcccccc
Confidence 77889999999999999999999999976432 12233332222222 235 9999999841
Q ss_pred ----------CccccCCC-CCC--C------------------------------------CCceEEeecCCCCCCchhH
Q 038978 129 ----------PFLLYAGG-NDF--E------------------------------------DRSKFCICPGGSLGNFAQI 159 (260)
Q Consensus 129 ----------~l~~f~gg-~~~--~------------------------------------~~S~FCl~p~G~~~~s~rl 159 (260)
.|++|+|+ ... + .+|+|||||+|++++|.|+
T Consensus 281 ~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~ 360 (464)
T KOG1021|consen 281 QGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDTPTSPRL 360 (464)
T ss_pred ccCCCCCCCceEEEEeccccCCcHHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeEEECCCCCCcccHhH
Confidence 25678876 210 0 0999999999999999999
Q ss_pred HHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHH-HHHHhcCCChHHHHHHHHHHHh-hhccceecC--CCC
Q 038978 160 VDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRL-NLILKGIISKGKFINSHKNTFK-AQKQFEWNT--PPI 235 (260)
Q Consensus 160 ~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l-~~~L~~i~~~~~~~~mr~~l~~-~~~~~~y~~--~~~ 235 (260)
||||.+|||||||+|++.+||++++||++|||+|++++++++ .++|.++ +.+++.+||+++.+ +.++|.++. +.+
T Consensus 361 fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i-~~~~~~~m~~~v~~~v~r~~~~~~~~~~~ 439 (464)
T KOG1021|consen 361 FDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSI-PEEEVLRMRENVIRLVPRHFLKKPPGPPK 439 (464)
T ss_pred HHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhc-CHHHHHHHHHHHHHHHHhhEEeCCCCCCC
Confidence 999999999999999999999999999999999999999998 9999999 99999999999995 999999998 888
Q ss_pred CccHHHHHHHHHHHHHHhhccc
Q 038978 236 KYGTTFHMVVYELWLRRYFLKY 257 (260)
Q Consensus 236 ~~D~af~~~~~~l~~R~~~~~~ 257 (260)
.+| ||+++++++|+|+++.+.
T Consensus 440 ~~d-a~~~~~~~v~~r~~~~~~ 460 (464)
T KOG1021|consen 440 RGD-AFHMILHSLWRRLHKLRS 460 (464)
T ss_pred cch-hHHHHHhhhhhccccccc
Confidence 899 999999999999998763
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=1.8e-48 Score=352.01 Aligned_cols=200 Identities=35% Similarity=0.610 Sum_probs=164.9
Q ss_pred ccCCCCCCCCcchhHHHHHHHHhcCCcccCCcCCcceEEEeccccccc----CCC-C--CHHHHHHHHHHHHhcCccccC
Q 038978 9 SYQTPWKLKRKFAIEGYFFKKIRESRFLTTDPAKAHLFFIPVSCHKMR----GKF-Y--NWLMVTLKLISLILKYPYLNR 81 (260)
Q Consensus 9 ~~~~~~~~~~~y~~E~~f~~~l~~s~~~T~dP~eA~lF~vP~~~~~~~----~~~-~--~~~~l~~~~~~l~~~~PyWnR 81 (260)
..+..++.+++|++|.+|++.|++|+++|.||+|||+||||+++++.. +.. . ..+.+.+++..+++++|||||
T Consensus 26 ~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~r 105 (302)
T PF03016_consen 26 DEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGSPNSGADRDSLSDALRHLLASYPYWNR 105 (302)
T ss_pred cccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCCccchhhHHHHHHHHHHHHhcCchhhc
Confidence 356778899999999999999999999999999999999999999882 111 1 123457788888999999999
Q ss_pred CCCCCeeeecccCCCCccccchhhhhhcceeee---------ec-CCCceecCCCCC-------------------Cccc
Q 038978 82 TQGADHFFVTCYDIGVRATEGFHNLWKNSIRVL---------CS-RHKGVSLPQIIP-------------------PFLL 132 (260)
Q Consensus 82 ~~G~DH~~~~~~d~g~~~~~~~~~~~~~si~~~---------~~-~~kDv~iP~~~~-------------------~l~~ 132 (260)
++|+||||++++|+|.+.......+.++++.+. |+ +++||++|+... .+++
T Consensus 106 ~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~ 185 (302)
T PF03016_consen 106 SGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPPFVPPSSLPDWRPWPQRPPARRPYLLF 185 (302)
T ss_pred cCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeeccccccccccCCccccccCCccCCceEEE
Confidence 999999999999988876554445555544433 22 399999998752 1234
Q ss_pred cCCCCCC---------C--------------------------------CCceEEeecCCCCCCchhHHHHHhhCceeEE
Q 038978 133 YAGGNDF---------E--------------------------------DRSKFCICPGGSLGNFAQIVDSIHCGCVPVI 171 (260)
Q Consensus 133 f~gg~~~---------~--------------------------------~~S~FCl~p~G~~~~s~rl~dal~~GCIPVi 171 (260)
|+|+... + .+|+|||+|+|+++++.||+|||.+||||||
T Consensus 186 f~g~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVi 265 (302)
T PF03016_consen 186 FAGTIRPSSNDYSGGVRQRLLDECKSDPDFRCSDGSETCPSPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVI 265 (302)
T ss_pred EeeeccccccccchhhhhHHHHhcccCCcceeeecccccccchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEE
Confidence 4442100 0 0899999999999999999999999999999
Q ss_pred eeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 172 ISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 172 i~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
|+|++.|||+++|||++|||+|+++++++|+++|++|
T Consensus 266 i~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 266 ISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred ecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.86 E-value=1e-21 Score=187.51 Aligned_cols=212 Identities=16% Similarity=0.315 Sum_probs=149.0
Q ss_pred HHHHHhcCCcccCCcCCcceEEEecccccccCC-CCCHHHHHHHHHHHHhcCccccCCCCCCeeeecccCCC--Cc----
Q 038978 26 FFKKIRESRFLTTDPAKAHLFFIPVSCHKMRGK-FYNWLMVTLKLISLILKYPYLNRTQGADHFFVTCYDIG--VR---- 98 (260)
Q Consensus 26 f~~~l~~s~~~T~dP~eA~lF~vP~~~~~~~~~-~~~~~~l~~~~~~l~~~~PyWnR~~G~DH~~~~~~d~g--~~---- 98 (260)
|.+.+.+.-|.|+||+.||++++-+-. +... ......|. . +-..|||.. +|+||++++...-. .+
T Consensus 220 fq~t~~~n~~~ve~pd~ACiyi~lvge--~q~P~~l~p~ele----k-lyslp~w~~-dg~Nhvl~Nl~r~s~~~n~lyn 291 (907)
T KOG2264|consen 220 FQETIPNNVYLVETPDKACIYIHLVGE--IQSPVVLTPAELE----K-LYSLPHWRT-DGFNHVLFNLGRPSDTQNLLYN 291 (907)
T ss_pred HHHhcccceeEeeCCCccEEEEEEecc--ccCCCcCChHhhh----h-hhcCccccC-CCcceEEEEccCccccccceeE
Confidence 445555778999999999999986543 2222 12233332 2 347899965 89999999864321 00
Q ss_pred cccchhhhhhcceeeeec-CCCceecCCCCC-----------C--------ccccCCC--------------------CC
Q 038978 99 ATEGFHNLWKNSIRVLCS-RHKGVSLPQIIP-----------P--------FLLYAGG--------------------ND 138 (260)
Q Consensus 99 ~~~~~~~~~~~si~~~~~-~~kDv~iP~~~~-----------~--------l~~f~gg--------------------~~ 138 (260)
...+.++..+.++-.... +|+|+++|+..+ + +.++.|. ..
T Consensus 292 ~~t~raivvQssf~~~q~RpgfDl~V~pv~h~~~e~~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp 371 (907)
T KOG2264|consen 292 FQTGRAIVVQSSFYTVQIRPGFDLPVDPVNHIAVEKNFVELTPLVPFQRKYLITLQGKIESDNSSLNEFSAFSEELSADP 371 (907)
T ss_pred eccCceEEEeecceeeeeccCCCcccCcccccccCccceecCcccchhhheeEEEEeeecccccccchhhhhHHHhccCC
Confidence 011222333444333333 499999997652 1 1222220 00
Q ss_pred CC-----------------------------------------CCceEEee-cCCCCC-----CchhHHHHHhhCceeEE
Q 038978 139 FE-----------------------------------------DRSKFCIC-PGGSLG-----NFAQIVDSIHCGCVPVI 171 (260)
Q Consensus 139 ~~-----------------------------------------~~S~FCl~-p~G~~~-----~s~rl~dal~~GCIPVi 171 (260)
.+ +.|||||+ |+|++- ...|+++|++.||||||
T Consensus 372 ~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPvi 451 (907)
T KOG2264|consen 372 SRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVI 451 (907)
T ss_pred cccccccCceEEEEEeeccccCCCCCcchhhhccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEE
Confidence 00 09999986 778753 24799999999999999
Q ss_pred eeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCCChHHHHHHHHHHHhhhccceecCCCCCccHHHHHHHHHHHHH
Q 038978 172 ISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGIISKGKFINSHKNTFKAQKQFEWNTPPIKYGTTFHMVVYELWLR 251 (260)
Q Consensus 172 i~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~~mr~~l~~~~~~~~y~~~~~~~D~af~~~~~~l~~R 251 (260)
+++...|||+|.|||++.++++|.+.+.+++-+|+++ .+.++.+||++++-.|..+. ..-|..+++++..|+.|
T Consensus 452 Lg~~~~LPyqd~idWrraal~lPkaR~tE~HFllrs~-~dsDll~mRRqGRl~wEtYl-----s~~~~~~~tvlA~lR~r 525 (907)
T KOG2264|consen 452 LGNSQLLPYQDLIDWRRAALRLPKARLTEAHFLLRSF-EDSDLLEMRRQGRLFWETYL-----SDRHLLARTVLAALRYR 525 (907)
T ss_pred eccccccchHHHHHHHHHhhhCCccccchHHHHHHhc-chhhHHHHHhhhhhhHHHHh-----hHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 99999999999976665532 34455888899888854
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.65 E-value=6.2e-16 Score=147.46 Aligned_cols=197 Identities=18% Similarity=0.170 Sum_probs=139.9
Q ss_pred CCcchhHHH-HHHHHhcCCcccCCcCCcceEEEecccccccCCCCCHHHHHHHHHHHHhcCccccCCCCCCeeeecccCC
Q 038978 17 KRKFAIEGY-FFKKIRESRFLTTDPAKAHLFFIPVSCHKMRGKFYNWLMVTLKLISLILKYPYLNRTQGADHFFVTCYDI 95 (260)
Q Consensus 17 ~~~y~~E~~-f~~~l~~s~~~T~dP~eA~lF~vP~~~~~~~~~~~~~~~l~~~~~~l~~~~PyWnR~~G~DH~~~~~~d~ 95 (260)
....+.|.. +.+....|.++|.|+.+||+|..... .++++.++. ++ -...+.+.-.|.| |.||..++.-..
T Consensus 118 ~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~Ps~d--~lnQn~l~~-kl---~~~ala~l~~wdr--g~nH~~fnmLpG 189 (691)
T KOG1022|consen 118 GATWSPEYIALLEAWHLSFYYTFNYNGACLFMPSSD--ELNQNPLSW-KL---EKVALAKLLVWDR--GVNHEGFNMLPG 189 (691)
T ss_pred cccccHHHHHHHHHHHhccceecCCCceEEEecchh--hhccCcchH-HH---HHHHHhcccchhc--ccceeeEeeccC
Confidence 344555544 77888899999999999999975332 244333331 22 2223456669999 999999987555
Q ss_pred CCccccchhhhhhcceee------ee--cCCCceecCCCCCCcc----c------cCC-------CCCCC----------
Q 038978 96 GVRATEGFHNLWKNSIRV------LC--SRHKGVSLPQIIPPFL----L------YAG-------GNDFE---------- 140 (260)
Q Consensus 96 g~~~~~~~~~~~~~si~~------~~--~~~kDv~iP~~~~~l~----~------f~g-------g~~~~---------- 140 (260)
|.....+..+..+--+.. ++ ..|+||.+|...+-.. . +.+ |++.+
T Consensus 190 g~p~yntaldv~~d~a~~~gggf~tW~yr~g~dv~ipv~Sp~~v~~~~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh 269 (691)
T KOG1022|consen 190 GDPTYNTALDVGQDEAWYSGGGFGTWKYRKGNDVYIPVRSPGNVGRAFLYDGSRYRVLQDCQENYGPRIRVSLIELLSKH 269 (691)
T ss_pred CCCCccccccCCcceeEEecCCcCcccccCCCccccccccccccCccccCCccceeeeeccccccchHhHHhHHHHHhhc
Confidence 543212211222111111 22 2399999998773110 0 000 11100
Q ss_pred ---------------------------------CCceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCC
Q 038978 141 ---------------------------------DRSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWN 187 (260)
Q Consensus 141 ---------------------------------~~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~ 187 (260)
+..+||+.-++.+.+..-+.+-+.+||+|||..|.+.+||++++||.
T Consensus 270 ~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~ 349 (691)
T KOG1022|consen 270 EERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWI 349 (691)
T ss_pred cceEEecchhccccccccchhhcccccccccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhce
Confidence 17899999999988899999999999999999999999999999999
Q ss_pred ceEEEEccccHhHHHHHHhcCCChHHHHHHHHHHH
Q 038978 188 KLSMIIREDDVHRLNLILKGIISKGKFINSHKNTF 222 (260)
Q Consensus 188 ~fsv~i~~~~~~~l~~~L~~i~~~~~~~~mr~~l~ 222 (260)
..||+++|..+..+.+.|+++ +...+-+||.+..
T Consensus 350 ~aSv~~~e~~~~~v~~~l~~i-~~~~i~sl~~r~~ 383 (691)
T KOG1022|consen 350 VASVWCMEYYAGKVMDALLNI-ETAGICSLQLRRI 383 (691)
T ss_pred eeeEEeehhhHHHHHHHhhcc-hhcchhhhhhhhh
Confidence 999999999999999999999 9999999887764
No 5
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.63 E-value=0.0051 Score=54.96 Aligned_cols=87 Identities=11% Similarity=0.197 Sum_probs=63.6
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.|..|+.|.........++|||.+|| |||.++.-. ..+++.=....+.++..+..++.+.+..+. .++...+|.++
T Consensus 266 ~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 342 (364)
T cd03814 266 SADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAAR 342 (364)
T ss_pred hCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 88999999887666788999999999 788777432 334444445667777777776666666653 57788889888
Q ss_pred HHhhhccceec
Q 038978 221 TFKAQKQFEWN 231 (260)
Q Consensus 221 l~~~~~~~~y~ 231 (260)
..+..+.+.|.
T Consensus 343 ~~~~~~~~~~~ 353 (364)
T cd03814 343 ARAEAERRSWE 353 (364)
T ss_pred HHHHHhhcCHH
Confidence 88776666654
No 6
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=96.49 E-value=0.0072 Score=52.99 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=62.9
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-CChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-ISKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~~~~~~~~mr~~ 220 (260)
++.+++.|.........++||+.+||- ||.++....+ +++++-....+.++..++.++.+.+..+ ..++...+|.++
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~ 329 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGAN 329 (348)
T ss_pred hCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 788888887665556889999999985 5555532222 2334444567778888887777777766 367888899998
Q ss_pred HHhhhccceec
Q 038978 221 TFKAQKQFEWN 231 (260)
Q Consensus 221 l~~~~~~~~y~ 231 (260)
.++..+.|.|.
T Consensus 330 ~~~~~~~~~~~ 340 (348)
T cd03820 330 ARESAERFSIE 340 (348)
T ss_pred HHHHHHHhCHH
Confidence 88888777664
No 7
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.46 E-value=0.0077 Score=52.86 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=64.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-CChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-ISKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~~~~~~~~mr~~ 220 (260)
.|.+.++|.-.+..+..++||+.+|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ ..++...+|.++
T Consensus 275 ~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 351 (374)
T cd03801 275 AADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEA 351 (374)
T ss_pred hcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHH
Confidence 78888888766666788999999997 6777765 3355666657778888888888887777775 256677888888
Q ss_pred HH-hhhccceec
Q 038978 221 TF-KAQKQFEWN 231 (260)
Q Consensus 221 l~-~~~~~~~y~ 231 (260)
.+ .+.+.+.|+
T Consensus 352 ~~~~~~~~~~~~ 363 (374)
T cd03801 352 ARERVAERFSWD 363 (374)
T ss_pred HHHHHHHhcCHH
Confidence 77 456665554
No 8
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.32 E-value=0.01 Score=53.19 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=63.0
Q ss_pred CceEEeecCCCC--CCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHH
Q 038978 142 RSKFCICPGGSL--GNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSH 218 (260)
Q Consensus 142 ~S~FCl~p~G~~--~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr 218 (260)
.+.+++.|.... ..+..+.||+.+|| |||.++.-. .+.+.+ ....+.++..+..++.+.|..+. .++...+|+
T Consensus 267 ~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~ 342 (366)
T cd03822 267 AADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALR 342 (366)
T ss_pred hcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHH
Confidence 788888888766 66788999999999 999887432 333333 34456677777877777777663 457888899
Q ss_pred HHHHhhhccceec
Q 038978 219 KNTFKAQKQFEWN 231 (260)
Q Consensus 219 ~~l~~~~~~~~y~ 231 (260)
++.++..+.+.|+
T Consensus 343 ~~~~~~~~~~s~~ 355 (366)
T cd03822 343 ARAREYARAMSWE 355 (366)
T ss_pred HHHHHHHhhCCHH
Confidence 9888877766665
No 9
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.26 E-value=0.0045 Score=50.62 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=49.2
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.|.+.++|......+..+.||+.+|| |||+++. -.+.+++.=..-.+.++..++.++.+.+..+. .++....|.++
T Consensus 92 ~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~ 168 (172)
T PF00534_consen 92 SSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKN 168 (172)
T ss_dssp HTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 57888898887778899999999999 6667762 12223332223446677778888887777772 33445555555
Q ss_pred HH
Q 038978 221 TF 222 (260)
Q Consensus 221 l~ 222 (260)
.+
T Consensus 169 ~~ 170 (172)
T PF00534_consen 169 AR 170 (172)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 10
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=95.69 E-value=0.026 Score=50.49 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=61.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-CChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-ISKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~~~~~~~~mr~~ 220 (260)
.+.+++.|.-....+..++||+.+|| |||.++.- ...+++ .+..+.++..+..++.+.|..+ ..++...+|.++
T Consensus 272 ~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 346 (365)
T cd03809 272 GARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPALREELRER 346 (365)
T ss_pred hhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77888888654444677999999997 77777642 233444 3456677777888888777774 367788888888
Q ss_pred HHhhhccceec
Q 038978 221 TFKAQKQFEWN 231 (260)
Q Consensus 221 l~~~~~~~~y~ 231 (260)
.+++.+.+.|+
T Consensus 347 ~~~~~~~~sw~ 357 (365)
T cd03809 347 GLARAKRFSWE 357 (365)
T ss_pred HHHHHHhCCHH
Confidence 88877887775
No 11
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.58 E-value=0.03 Score=53.97 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=67.3
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCC---CceEEEEccccHhHHHHHHhcCC-ChHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDW---NKLSMIIREDDVHRLNLILKGII-SKGKFINS 217 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw---~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~m 217 (260)
.+..++.|...+....-++|||.+| +|||.++.- ...++++- .+..+.++..|...+.+.+..+. .++...+|
T Consensus 331 ~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~ 407 (465)
T PLN02871 331 SGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERM 407 (465)
T ss_pred HCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 7788888887666678899999999 899988743 23444443 67777888888888887777663 56778889
Q ss_pred HHHHHhhhccceecCC
Q 038978 218 HKNTFKAQKQFEWNTP 233 (260)
Q Consensus 218 r~~l~~~~~~~~y~~~ 233 (260)
.++.++..+.|.|...
T Consensus 408 ~~~a~~~~~~fsw~~~ 423 (465)
T PLN02871 408 GAAAREEVEKWDWRAA 423 (465)
T ss_pred HHHHHHHHHhCCHHHH
Confidence 9998887777777654
No 12
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=95.51 E-value=0.042 Score=48.31 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=59.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+.+++.|.........++||+.+|| |||.++.-. ..+.+.=....+.++..+...+.+.+..+. .++...+|.++
T Consensus 263 ~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 339 (359)
T cd03808 263 AADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQA 339 (359)
T ss_pred hccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 78888888776666788999999996 778776432 234443345566777777777777766642 56777777777
Q ss_pred HHhh-hcccee
Q 038978 221 TFKA-QKQFEW 230 (260)
Q Consensus 221 l~~~-~~~~~y 230 (260)
.++. .++|.+
T Consensus 340 ~~~~~~~~~s~ 350 (359)
T cd03808 340 ARKRAEEEFDE 350 (359)
T ss_pred HHHHHHHhcCH
Confidence 6664 555544
No 13
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.43 E-value=0.039 Score=49.13 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=58.9
Q ss_pred CceEEeecCCCCCC-----chhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHH
Q 038978 142 RSKFCICPGGSLGN-----FAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFI 215 (260)
Q Consensus 142 ~S~FCl~p~G~~~~-----s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~ 215 (260)
.+.++++|...+.. ...++||+.+|| |||.++.-.. .+.+.=....+.++..+..++.+.|..+. .+++..
T Consensus 294 ~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~ 370 (394)
T cd03794 294 AADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGES--AELVEEAGAGLVVPPGDPEALAAAILELLDDPEERA 370 (394)
T ss_pred hhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCc--hhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHH
Confidence 78888888765532 556899999997 7888764322 22222225566777777777777776663 677788
Q ss_pred HHHHHHHhhhc-cceec
Q 038978 216 NSHKNTFKAQK-QFEWN 231 (260)
Q Consensus 216 ~mr~~l~~~~~-~~~y~ 231 (260)
+|.++.++..+ +|.|.
T Consensus 371 ~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 371 EMGENGRRYVEEKFSRE 387 (394)
T ss_pred HHHHHHHHHHHHhhcHH
Confidence 88888776554 66654
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.39 E-value=0.046 Score=50.97 Aligned_cols=89 Identities=11% Similarity=0.178 Sum_probs=61.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+..++.|.-......-+.|||.+|| |||.++.- ...+++.=....+.++..|...+.+.+..+. .++...+|.++
T Consensus 302 ~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 302 AADVVAVPSYNESFGLVAMEAQACGT-PVVAARVG--GLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred hCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCC--CcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 67777777654445578999999996 88887742 2234454345566778788877776665552 55677889888
Q ss_pred HHhhhccceecCC
Q 038978 221 TFKAQKQFEWNTP 233 (260)
Q Consensus 221 l~~~~~~~~y~~~ 233 (260)
.++..+.|.|...
T Consensus 379 ~~~~~~~fsw~~~ 391 (405)
T TIGR03449 379 AVEHAAGFSWAAT 391 (405)
T ss_pred HHHHHHhCCHHHH
Confidence 8887777777643
No 15
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.36 E-value=0.047 Score=49.21 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=60.1
Q ss_pred CceEEeecC-CCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHh-cCC-ChHHHHHHH
Q 038978 142 RSKFCICPG-GSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILK-GII-SKGKFINSH 218 (260)
Q Consensus 142 ~S~FCl~p~-G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~-~i~-~~~~~~~mr 218 (260)
.|..+++|. -......-++||+.+|| |||.++. -+..+++.-....+.++..+...+.+.+. .+. ++++..+|.
T Consensus 263 ~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 339 (355)
T cd03819 263 LADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMF 339 (355)
T ss_pred hCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHH
Confidence 677778876 33334578999999999 7887763 34456666565677788888888777763 321 677888888
Q ss_pred HHHHhhh-ccceec
Q 038978 219 KNTFKAQ-KQFEWN 231 (260)
Q Consensus 219 ~~l~~~~-~~~~y~ 231 (260)
++.++.. .+|.|.
T Consensus 340 ~~a~~~~~~~f~~~ 353 (355)
T cd03819 340 AKARMCVETLFSYD 353 (355)
T ss_pred HHHHHHHHHhhhhc
Confidence 8877644 445543
No 16
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.31 E-value=0.052 Score=49.43 Aligned_cols=87 Identities=11% Similarity=0.262 Sum_probs=61.5
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+..+++|.-.......+.|||.+| +|||.++.- ...+++.-..-...++..+..++.+.+..+. .++...+|+++
T Consensus 270 ~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 346 (371)
T cd04962 270 IADLFLLPSEKESFGLAALEAMACG-VPVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRA 346 (371)
T ss_pred hcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 7888888875555567899999999 688888753 2345554444556677778877776665542 56778889988
Q ss_pred HHhh-hccceec
Q 038978 221 TFKA-QKQFEWN 231 (260)
Q Consensus 221 l~~~-~~~~~y~ 231 (260)
.++. .++|.|.
T Consensus 347 ~~~~~~~~fs~~ 358 (371)
T cd04962 347 ARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHhCCHH
Confidence 8875 5666654
No 17
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.23 E-value=0.038 Score=50.64 Aligned_cols=87 Identities=13% Similarity=0.249 Sum_probs=61.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.|..+++|.-.......++||+.+| +|||.++.- ...+++.-....+.++..+...+.+.+..+. .++...+|.++
T Consensus 302 ~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 378 (398)
T cd03800 302 AADVFVNPALYEPFGLTALEAMACG-LPVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRA 378 (398)
T ss_pred hCCEEEecccccccCcHHHHHHhcC-CCEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 7888888876555567799999999 599988732 2334454445667778778877777666653 56778888888
Q ss_pred HHhhh-ccceec
Q 038978 221 TFKAQ-KQFEWN 231 (260)
Q Consensus 221 l~~~~-~~~~y~ 231 (260)
.++.. ++|.|.
T Consensus 379 a~~~~~~~~s~~ 390 (398)
T cd03800 379 GLRRARARYTWE 390 (398)
T ss_pred HHHHHHHhCCHH
Confidence 87655 777664
No 18
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.13 E-value=0.059 Score=39.95 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=47.2
Q ss_pred EeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-CChHHHHHHHHHHHh-
Q 038978 146 CICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-ISKGKFINSHKNTFK- 223 (260)
Q Consensus 146 Cl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~~~~~~~~mr~~l~~- 223 (260)
||.|.-.+..+.|++|++.+||.. |..+. ..+.+.++..+-.+.++ +..++.+.+..+ ..+++.++|.++..+
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~v-i~~~~--~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPV-ISDDS--PGLREIFEDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeE-EECCh--HHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 455543344578999999999864 44433 11223345555555554 444444444443 267788888888765
Q ss_pred hhccceec
Q 038978 224 AQKQFEWN 231 (260)
Q Consensus 224 ~~~~~~y~ 231 (260)
+.+++.|.
T Consensus 77 v~~~~t~~ 84 (92)
T PF13524_consen 77 VLKRHTWE 84 (92)
T ss_pred HHHhCCHH
Confidence 44355543
No 19
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=95.05 E-value=0.067 Score=50.10 Aligned_cols=87 Identities=11% Similarity=0.162 Sum_probs=59.6
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.|..++.|.-....+..++|||++|| |||.++.- +..+++.-..-.+.++..|...+.+.+..+. .++...+|.++
T Consensus 300 ~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ 376 (396)
T cd03818 300 VSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRA 376 (396)
T ss_pred hCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--CchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 56666666544444567999999999 78877642 4566666566677888888877776666552 55677888888
Q ss_pred HHhhh-ccceec
Q 038978 221 TFKAQ-KQFEWN 231 (260)
Q Consensus 221 l~~~~-~~~~y~ 231 (260)
.++.. ++|.|.
T Consensus 377 ar~~~~~~fs~~ 388 (396)
T cd03818 377 ARRTALRYDLLS 388 (396)
T ss_pred HHHHHHHhccHH
Confidence 77644 446654
No 20
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.01 E-value=0.064 Score=49.40 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=60.4
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+..+++|.-......-++|||.+|| |||.+|.- ...+++.-......++..+..++.+.|..+. .++...+|.++
T Consensus 272 ~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~ 348 (374)
T TIGR03088 272 ALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAA 348 (374)
T ss_pred hcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 66666677554445678999999996 99998842 2345565556677888888887777776652 45566677766
Q ss_pred HHhh-hccceecC
Q 038978 221 TFKA-QKQFEWNT 232 (260)
Q Consensus 221 l~~~-~~~~~y~~ 232 (260)
.++. .+.|.|..
T Consensus 349 a~~~~~~~fs~~~ 361 (374)
T TIGR03088 349 GRARAEQQFSINA 361 (374)
T ss_pred HHHHHHHhCCHHH
Confidence 6554 45666653
No 21
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=94.93 E-value=0.054 Score=48.06 Aligned_cols=85 Identities=18% Similarity=0.439 Sum_probs=54.5
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+.++++|.-....+..++|||.+|| |||.++.- ...+.+.- ...+.++.+ ...+.+.+..+. .++...+|.++
T Consensus 281 ~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~ 355 (375)
T cd03821 281 DADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQRLKAMGEN 355 (375)
T ss_pred hCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHHHHHHHHHH
Confidence 78888888776556788999999997 88887643 22333322 344444443 355555554442 34678888888
Q ss_pred HHhh-hccceec
Q 038978 221 TFKA-QKQFEWN 231 (260)
Q Consensus 221 l~~~-~~~~~y~ 231 (260)
.++. .++|.|.
T Consensus 356 ~~~~~~~~~s~~ 367 (375)
T cd03821 356 GRALVEERFSWT 367 (375)
T ss_pred HHHHHHHhcCHH
Confidence 7775 6666654
No 22
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=94.86 E-value=0.11 Score=47.28 Aligned_cols=87 Identities=14% Similarity=0.265 Sum_probs=58.7
Q ss_pred CceEEeecCCC------CCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHH
Q 038978 142 RSKFCICPGGS------LGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKF 214 (260)
Q Consensus 142 ~S~FCl~p~G~------~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~ 214 (260)
.|..+++|.-. ......++|||.+|| |||.++.-. ..+.+.=....+.++..+..++.+.+..+. +++..
T Consensus 264 ~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~ 340 (367)
T cd05844 264 RARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLR 340 (367)
T ss_pred hCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHH
Confidence 55665665421 223578999999996 999887532 334444456677888888888877776653 55667
Q ss_pred HHHHHHHHh-hhccceec
Q 038978 215 INSHKNTFK-AQKQFEWN 231 (260)
Q Consensus 215 ~~mr~~l~~-~~~~~~y~ 231 (260)
.+|.++.++ +.++|.|.
T Consensus 341 ~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 341 ARMGAAGRRRVEERFDLR 358 (367)
T ss_pred HHHHHHHHHHHHHHCCHH
Confidence 788877766 44667664
No 23
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=94.73 E-value=0.071 Score=47.31 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=57.5
Q ss_pred CceEEeecCC-CCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHH
Q 038978 142 RSKFCICPGG-SLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHK 219 (260)
Q Consensus 142 ~S~FCl~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~ 219 (260)
.+..+++|.- .+.....++|||.+| +|||.++.- ...+.++.....+.++..|..++.+.+..+. .++...+|++
T Consensus 262 ~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03823 262 EIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRA 338 (359)
T ss_pred hCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHH
Confidence 8889999863 344567899999999 677777632 2345566666678888888887777776663 4677777777
Q ss_pred HHHhhh
Q 038978 220 NTFKAQ 225 (260)
Q Consensus 220 ~l~~~~ 225 (260)
+.++..
T Consensus 339 ~~~~~~ 344 (359)
T cd03823 339 GIEPPR 344 (359)
T ss_pred hHHHhh
Confidence 765543
No 24
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=94.60 E-value=0.047 Score=48.13 Aligned_cols=87 Identities=14% Similarity=0.307 Sum_probs=56.5
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCCChHHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGIISKGKFINSHKNT 221 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~~mr~~l 221 (260)
++.++++|...+..+..++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+..+.+....+++.
T Consensus 278 ~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 354 (377)
T cd03798 278 AADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAAR 354 (377)
T ss_pred hcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHH
Confidence 88999999876666788999999998 677766321 223344444456778878877666666652222224444455
Q ss_pred Hhhhccceec
Q 038978 222 FKAQKQFEWN 231 (260)
Q Consensus 222 ~~~~~~~~y~ 231 (260)
..+.+.+.|.
T Consensus 355 ~~~~~~~s~~ 364 (377)
T cd03798 355 RRVAERFSWE 364 (377)
T ss_pred HHHHHHhhHH
Confidence 5566666664
No 25
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=94.57 E-value=0.073 Score=47.01 Aligned_cols=85 Identities=13% Similarity=0.225 Sum_probs=56.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+..+++|......+.-+.||+.+|| |||.++.-. ..+.+.= ..+.++..+..++.+.+..+. .++...+|.++
T Consensus 268 ~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 268 ALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred hCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHH
Confidence 78888998877666788999999996 788776321 1222221 456677777776766666552 34667777776
Q ss_pred HHh-hhccceec
Q 038978 221 TFK-AQKQFEWN 231 (260)
Q Consensus 221 l~~-~~~~~~y~ 231 (260)
.++ +.+.|.|+
T Consensus 343 ~~~~~~~~~s~~ 354 (365)
T cd03807 343 ARERIEENFSIE 354 (365)
T ss_pred HHHHHHHhCCHH
Confidence 665 44556664
No 26
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=94.57 E-value=0.057 Score=49.83 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=60.2
Q ss_pred CceEEeecCCCC-----------CCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCCC
Q 038978 142 RSKFCICPGGSL-----------GNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGIIS 210 (260)
Q Consensus 142 ~S~FCl~p~G~~-----------~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~ 210 (260)
++.|+|++.+++ .....++++|++| +|||+++.-.+ .+++.=....+.++ ++.++.+.|.++ +
T Consensus 225 ~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G-~PVI~~~~~~~--~~~V~~~~~G~~v~--~~~el~~~l~~~-~ 298 (333)
T PRK09814 225 SKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG-LPVIVWSKAAI--ADFIVENGLGFVVD--SLEELPEIIDNI-T 298 (333)
T ss_pred hcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCC-CCEEECCCccH--HHHHHhCCceEEeC--CHHHHHHHHHhc-C
Confidence 558888877651 1234588889988 59999875332 24444456666666 567899999999 9
Q ss_pred hHHHHHHHHHHHhhhccce
Q 038978 211 KGKFINSHKNTFKAQKQFE 229 (260)
Q Consensus 211 ~~~~~~mr~~l~~~~~~~~ 229 (260)
++++.+|+++.+++.+.+.
T Consensus 299 ~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 299 EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887754
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=94.46 E-value=0.088 Score=48.49 Aligned_cols=87 Identities=15% Similarity=0.271 Sum_probs=58.3
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccH------hHHHHHHhcCC-ChHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDV------HRLNLILKGII-SKGKF 214 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~------~~l~~~L~~i~-~~~~~ 214 (260)
.|..+++|.-......-++||+.+|| |||.++.-. ..+++.=....+.++..+. ..+.+.|..+. ++++.
T Consensus 280 ~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~ 356 (388)
T TIGR02149 280 NAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELA 356 (388)
T ss_pred hCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHH
Confidence 67888888655555577899999998 888887432 3344433444566666665 66666666552 56777
Q ss_pred HHHHHHHHh-hhccceec
Q 038978 215 INSHKNTFK-AQKQFEWN 231 (260)
Q Consensus 215 ~~mr~~l~~-~~~~~~y~ 231 (260)
.+|.++.++ +.+.|.|.
T Consensus 357 ~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 357 KKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HHHHHHHHHHHHHhCCHH
Confidence 888887776 44667765
No 28
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=94.41 E-value=0.13 Score=46.21 Aligned_cols=87 Identities=9% Similarity=0.170 Sum_probs=57.6
Q ss_pred CceEEeecCCC------CCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHH
Q 038978 142 RSKFCICPGGS------LGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKF 214 (260)
Q Consensus 142 ~S~FCl~p~G~------~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~ 214 (260)
++.++++|... ......++||+.+||-. |.++.- ...+++.=..-...+++.+..++.+.|..+. .+++.
T Consensus 255 ~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pv-i~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~ 331 (355)
T cd03799 255 AADLFVLPSVTAADGDREGLPVVLMEAMAMGLPV-ISTDVS--GIPELVEDGETGLLVPPGDPEALADAIERLLDDPELR 331 (355)
T ss_pred hCCEEEecceecCCCCccCccHHHHHHHHcCCCE-EecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHH
Confidence 78888888654 34468899999999854 555432 2345554444566777777777776666652 55667
Q ss_pred HHHHHHHHhh-hccceec
Q 038978 215 INSHKNTFKA-QKQFEWN 231 (260)
Q Consensus 215 ~~mr~~l~~~-~~~~~y~ 231 (260)
.+|.++.++. ...|.|.
T Consensus 332 ~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 332 REMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHHHHHHHHHHHHhcCHH
Confidence 8888887654 4556554
No 29
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.15 E-value=0.17 Score=44.88 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=54.2
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.|.+.++|......+..++||+.+|| |||.++.- .+.+.+.-....+.++..+. ++.+.+..+. .++...+|+++
T Consensus 278 ~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~ 353 (374)
T cd03817 278 AADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKN 353 (374)
T ss_pred HcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHH
Confidence 78899999876666788999999986 56666532 23444444445556666553 4444444442 45566788888
Q ss_pred HHhhhccce
Q 038978 221 TFKAQKQFE 229 (260)
Q Consensus 221 l~~~~~~~~ 229 (260)
.++..+.+.
T Consensus 354 ~~~~~~~~~ 362 (374)
T cd03817 354 AEESAEKFS 362 (374)
T ss_pred HHHHHHHHH
Confidence 887666543
No 30
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=93.89 E-value=0.2 Score=45.03 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=59.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.|.+++.|........-++||+.+|| |||.++. -+..+++.=....+.++..+...+.+.|..+. .++...+|.++
T Consensus 264 ~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 340 (365)
T cd03825 264 AADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEA 340 (365)
T ss_pred hCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 78899999876666788999999997 5666653 23445554445666777777777776666552 45567888888
Q ss_pred HHhhh-cccee
Q 038978 221 TFKAQ-KQFEW 230 (260)
Q Consensus 221 l~~~~-~~~~y 230 (260)
.++.. +.|.|
T Consensus 341 ~~~~~~~~~s~ 351 (365)
T cd03825 341 ARELAENEFDS 351 (365)
T ss_pred HHHHHHHhcCH
Confidence 77644 44444
No 31
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=93.73 E-value=0.13 Score=47.21 Aligned_cols=88 Identities=13% Similarity=0.266 Sum_probs=59.6
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+..++.|.-.......+.|||.+|| |||.++.-.-| .+.+.=.+..+.++..+..++.+.|..+. .++...+|+++
T Consensus 278 ~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 355 (372)
T cd04949 278 KAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEA 355 (372)
T ss_pred hhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 67777777654445678999999998 77776521111 23343345666778778777777666653 56788899998
Q ss_pred HHhhhccceec
Q 038978 221 TFKAQKQFEWN 231 (260)
Q Consensus 221 l~~~~~~~~y~ 231 (260)
.++..+.|.|.
T Consensus 356 a~~~~~~~s~~ 366 (372)
T cd04949 356 AYENAERYSEE 366 (372)
T ss_pred HHHHHHHhhHH
Confidence 88777776654
No 32
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=93.66 E-value=0.22 Score=44.73 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=53.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC--CChHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI--ISKGKFINSHK 219 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~~~~~~~mr~ 219 (260)
.+.+.+.|.........++||+.+|| |||.+|.- ...+++.= ....++..+...+.+.+..+ .+++....|.+
T Consensus 262 ~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~ 336 (360)
T cd04951 262 AADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGA 336 (360)
T ss_pred hhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67777778766555688999999999 88887742 12233321 33455666776666555554 15566666666
Q ss_pred HHHhhhccceec
Q 038978 220 NTFKAQKQFEWN 231 (260)
Q Consensus 220 ~l~~~~~~~~y~ 231 (260)
+-..+.+.|.|.
T Consensus 337 ~~~~~~~~~s~~ 348 (360)
T cd04951 337 RRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHhcCHH
Confidence 644455666654
No 33
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.25 E-value=0.21 Score=47.82 Aligned_cols=86 Identities=13% Similarity=0.304 Sum_probs=57.9
Q ss_pred eEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHHHH
Q 038978 144 KFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKNTF 222 (260)
Q Consensus 144 ~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~l~ 222 (260)
..++.|.-......-+.|||.+|| |||.++.- ...++++=.+-.+.++..|...+.+.+..+. +++...+|.++.+
T Consensus 342 Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 342 GIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred CEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 344455544444577999999999 99999842 2345555455677788888887776665552 5566677777776
Q ss_pred h-hhccceecC
Q 038978 223 K-AQKQFEWNT 232 (260)
Q Consensus 223 ~-~~~~~~y~~ 232 (260)
+ +.++|.|..
T Consensus 419 ~~~~~~fsw~~ 429 (439)
T TIGR02472 419 EGVRRHYSWDA 429 (439)
T ss_pred HHHHHhCCHHH
Confidence 4 566777753
No 34
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=93.18 E-value=0.26 Score=46.27 Aligned_cols=88 Identities=8% Similarity=0.146 Sum_probs=55.7
Q ss_pred CceEEeecCCC-CCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEE-EEccccHhHHHHHHhcCCChHHHHHHHH
Q 038978 142 RSKFCICPGGS-LGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSM-IIREDDVHRLNLILKGIISKGKFINSHK 219 (260)
Q Consensus 142 ~S~FCl~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv-~i~~~~~~~l~~~L~~i~~~~~~~~mr~ 219 (260)
.|..+++|... .....-++|||++| +|||.++.-- ..+++.-..... .++..+...+.+.+..+.++.+..+|.+
T Consensus 276 ~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~ 352 (380)
T PRK15484 276 LADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAE 352 (380)
T ss_pred hCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 67788888753 44456799999999 6899887522 334443233332 4566677777666655434444567777
Q ss_pred HHHh-hhccceecC
Q 038978 220 NTFK-AQKQFEWNT 232 (260)
Q Consensus 220 ~l~~-~~~~~~y~~ 232 (260)
+.++ +.++|.|..
T Consensus 353 ~ar~~~~~~fsw~~ 366 (380)
T PRK15484 353 QAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHHHhCCHHH
Confidence 7764 567777764
No 35
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=93.03 E-value=0.31 Score=44.86 Aligned_cols=86 Identities=7% Similarity=-0.012 Sum_probs=54.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~ 220 (260)
.+.++++|.........++|||.+| +|||.++.-- -.+.+.-..-.+.++. +...+.+.+..+. .++...+|+++
T Consensus 299 ~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~ 374 (392)
T cd03805 299 SARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGG--PLETVVDGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAA 374 (392)
T ss_pred hCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCC--cHHHhccCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHH
Confidence 7888888876655567789999999 5777776421 1233333333444554 5666655555442 45668888887
Q ss_pred HHh-hhccceec
Q 038978 221 TFK-AQKQFEWN 231 (260)
Q Consensus 221 l~~-~~~~~~y~ 231 (260)
.++ +.+.|.|.
T Consensus 375 a~~~~~~~~s~~ 386 (392)
T cd03805 375 GRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHhcCHH
Confidence 776 45666664
No 36
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=92.73 E-value=0.18 Score=46.01 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=42.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
.+..+++|.-.+ .....+|||.+|| |||.++.-. ..+++.=....+.++..+...+.+.+..+
T Consensus 261 ~ad~~v~ps~e~-~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 261 RARAFLFPAEED-FGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred hCCEEEECCcCC-CCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 777778776533 3466899999998 999887422 23444334556777777777666666555
No 37
>PRK10307 putative glycosyl transferase; Provisional
Probab=92.28 E-value=0.098 Score=49.18 Aligned_cols=89 Identities=7% Similarity=0.090 Sum_probs=60.0
Q ss_pred CceEEeecCCCCC----CchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHH
Q 038978 142 RSKFCICPGGSLG----NFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFIN 216 (260)
Q Consensus 142 ~S~FCl~p~G~~~----~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~ 216 (260)
.+..++.|.-.+. ....++|+|.+| +|||.++.--....+++. ...+.++..|..++.+.|..+. .++...+
T Consensus 303 ~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~ 379 (412)
T PRK10307 303 MADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPK 379 (412)
T ss_pred hcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHH
Confidence 6666666643222 234589999999 588888642223335555 4577778888888888887762 5667788
Q ss_pred HHHHHHh-hhccceecCC
Q 038978 217 SHKNTFK-AQKQFEWNTP 233 (260)
Q Consensus 217 mr~~l~~-~~~~~~y~~~ 233 (260)
|+++.++ +.++|.|..-
T Consensus 380 ~~~~a~~~~~~~fs~~~~ 397 (412)
T PRK10307 380 LGTVAREYAERTLDKENV 397 (412)
T ss_pred HHHHHHHHHHHHcCHHHH
Confidence 9888887 4457877643
No 38
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=92.04 E-value=0.52 Score=44.13 Aligned_cols=85 Identities=8% Similarity=0.164 Sum_probs=54.1
Q ss_pred CceEEeecC--CCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHH
Q 038978 142 RSKFCICPG--GSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSH 218 (260)
Q Consensus 142 ~S~FCl~p~--G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr 218 (260)
.+..+++|. +.|. ...+.|||.+|| |||.++.- .+.+..=....+.++ .+..++.+.+..+. .++...+|.
T Consensus 297 ~adv~v~Ps~~~eG~-~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~ 370 (397)
T TIGR03087 297 HAAVAVAPLRIARGI-QNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANPAEREELG 370 (397)
T ss_pred hCCEEEecccccCCc-ccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHH
Confidence 677777774 3343 457999999998 99988742 222211123345555 66776766666552 556678888
Q ss_pred HHHHh-hhccceecC
Q 038978 219 KNTFK-AQKQFEWNT 232 (260)
Q Consensus 219 ~~l~~-~~~~~~y~~ 232 (260)
++.++ +.+.|.|..
T Consensus 371 ~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 371 QAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHHHHHhCCHHH
Confidence 88876 456777763
No 39
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=91.94 E-value=0.52 Score=44.81 Aligned_cols=87 Identities=14% Similarity=0.264 Sum_probs=58.8
Q ss_pred CceEEeecCCC------CCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-C-ChHH
Q 038978 142 RSKFCICPGGS------LGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-I-SKGK 213 (260)
Q Consensus 142 ~S~FCl~p~G~------~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~-~~~~ 213 (260)
.+..++.|.-. .....-+.|||.+|| |||.++.-- ..+++.=..-.+.+++.|...+.+.+..+ . +++.
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g--~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~ 374 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSG--IPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDE 374 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCC--chhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHH
Confidence 67777777421 222467999999996 999887432 23555545567778888888777776665 2 5567
Q ss_pred HHHHHHHHHh-hhccceec
Q 038978 214 FINSHKNTFK-AQKQFEWN 231 (260)
Q Consensus 214 ~~~mr~~l~~-~~~~~~y~ 231 (260)
..+|.++.++ +.++|.|.
T Consensus 375 ~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 375 LAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 8888888775 44566554
No 40
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=90.99 E-value=0.14 Score=48.01 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=42.1
Q ss_pred CceEEeecC---CCCCCchhHHHHHhhCceeEEee--C-ce--ecCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 142 RSKFCICPG---GSLGNFAQIVDSIHCGCVPVIIS--D-FH--DLPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 142 ~S~FCl~p~---G~~~~s~rl~dal~~GCIPVii~--d-~~--~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
+=+|.|+.. ..+..+-.+++|+.+|||||+++ . ++ .+|=...|+.++|. .+.+|.+.|+.+
T Consensus 227 ~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La~yl~~l 295 (349)
T PF00852_consen 227 KYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELADYLKYL 295 (349)
T ss_dssp TEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHHHHHHHH
Confidence 778888754 34566889999999999999999 3 22 35556677777664 467788888887
No 41
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=90.88 E-value=0.91 Score=43.36 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=52.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCC---CCceEEEEccccHhHHHHHHhcCC--ChHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILD---WNKLSMIIREDDVHRLNLILKGII--SKGKFIN 216 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~id---w~~fsv~i~~~~~~~l~~~L~~i~--~~~~~~~ 216 (260)
.|..++.|.-......-++|||++||.||. ++. --|.++++. -..-.+.+. +...+.+.+..+. +++....
T Consensus 324 ~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-~~~-ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~ 399 (419)
T cd03806 324 TASIGLHTMWNEHFGIGVVEYMAAGLIPLA-HAS-GGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLR 399 (419)
T ss_pred hCeEEEECCccCCcccHHHHHHHcCCcEEE-EcC-CCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHH
Confidence 778888876555556889999999997664 442 135566653 222332232 4544444443331 5556666
Q ss_pred HHHHHHhhhccceec
Q 038978 217 SHKNTFKAQKQFEWN 231 (260)
Q Consensus 217 mr~~l~~~~~~~~y~ 231 (260)
|+++.+++.++|.|+
T Consensus 400 ~~~~~~~~~~~fs~~ 414 (419)
T cd03806 400 IRRAARSSVKRFSDE 414 (419)
T ss_pred HHHHHHHHHHhhCHH
Confidence 777777787777664
No 42
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=90.82 E-value=0.77 Score=43.52 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=53.1
Q ss_pred eecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEcc-ccHhHHHHHHhcCC-ChHHHHHHHHHHHhh
Q 038978 147 ICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIRE-DDVHRLNLILKGII-SKGKFINSHKNTFKA 224 (260)
Q Consensus 147 l~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~-~~~~~l~~~L~~i~-~~~~~~~mr~~l~~~ 224 (260)
+.|.........+.|||++|+ |||.++.-- ..++++=..-.+.++. .+..++.+.|..+. +++...+|+++.++.
T Consensus 315 v~~S~~Eg~p~~llEAma~G~-PVIas~vgg--~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 315 VNLSESEGLPVSIMEAMSFGI-PVIATNVGG--TPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred EeCCccccccHHHHHHHHcCC-CEEeCCCCC--cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344443344678999999995 999887332 2345544444555554 46777777776663 578888999888875
Q ss_pred h-ccceec
Q 038978 225 Q-KQFEWN 231 (260)
Q Consensus 225 ~-~~~~y~ 231 (260)
+ ++|.+.
T Consensus 392 ~~~~f~~~ 399 (407)
T cd04946 392 WEENFNAS 399 (407)
T ss_pred HHHHcCHH
Confidence 5 455443
No 43
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=90.19 E-value=1.3 Score=38.58 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=52.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHH----HHHHhcCCChHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRL----NLILKGIISKGKFINS 217 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l----~~~L~~i~~~~~~~~m 217 (260)
.+.++++|.........++||+.+||. ||.++.- ...+++.=....+.++.++...+ ..++.....++...+|
T Consensus 263 ~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 339 (353)
T cd03811 263 AADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERL 339 (353)
T ss_pred hCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHH
Confidence 788999987655556789999999985 5666543 23345555566677888887765 3333333244556666
Q ss_pred HH-HHHhhhcc
Q 038978 218 HK-NTFKAQKQ 227 (260)
Q Consensus 218 r~-~l~~~~~~ 227 (260)
.+ +...+.++
T Consensus 340 ~~~~~~~~~~~ 350 (353)
T cd03811 340 AAAARERVARE 350 (353)
T ss_pred HHHHHHHHHHH
Confidence 66 33334433
No 44
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=90.10 E-value=1.1 Score=39.96 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=39.0
Q ss_pred CceEEeecCC-CCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 142 RSKFCICPGG-SLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 142 ~S~FCl~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
.+.+++.|.- .......++|||.+|+ |||.+|.-- ..++++-..-.+.++. +..+.+.|+.+
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~--~~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGA--VPEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCC--chhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 7888888864 2334578999999997 999988532 2344433322333343 55566555554
No 45
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=90.09 E-value=1 Score=41.61 Aligned_cols=86 Identities=10% Similarity=0.078 Sum_probs=51.4
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHH-hcCCChHHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLIL-KGIISKGKFINSHKN 220 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L-~~i~~~~~~~~mr~~ 220 (260)
.+..++.|........-+.||+.+| +|||.++.-.++ ++|.-....+.++..+ .+.+.+ +-+.+++...+|.++
T Consensus 273 ~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~--~~a~~i~~ll~~~~~~~~~~~~ 347 (372)
T cd03792 273 ASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVE--EAAVRILYLLRDPELRRKMGAN 347 (372)
T ss_pred hCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcH--HHHHHHHHHHcCHHHHHHHHHH
Confidence 6677777766555567899999999 599998743322 3333333333344322 222222 222256677888888
Q ss_pred HHhh-hccceecC
Q 038978 221 TFKA-QKQFEWNT 232 (260)
Q Consensus 221 l~~~-~~~~~y~~ 232 (260)
.++. .+.|.|..
T Consensus 348 a~~~~~~~~s~~~ 360 (372)
T cd03792 348 AREHVRENFLITR 360 (372)
T ss_pred HHHHHHHHcCHHH
Confidence 8774 56777653
No 46
>PHA01633 putative glycosyl transferase group 1
Probab=90.06 E-value=0.63 Score=43.62 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=25.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCc
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDF 175 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~ 175 (260)
.+.+.+.|.-......-+.|||.+|| |||.++-
T Consensus 223 ~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 223 AMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred hCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 56666677655556688999999999 9998864
No 47
>PRK14099 glycogen synthase; Provisional
Probab=89.52 E-value=0.99 Score=44.19 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=57.5
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCC-CCCCC--------ceEEEEccccHhHHHHHHhc----C
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFND-ILDWN--------KLSMIIREDDVHRLNLILKG----I 208 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~-~idw~--------~fsv~i~~~~~~~l~~~L~~----i 208 (260)
.+.+.+.|.-..+...-..|||.+||+||+ ++.=-+ .| ++|.. .-.+.++..+...|.+.|.. +
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGL--ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALF 445 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCc--cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHh
Confidence 478888887777777889999999999988 442111 12 22332 34677788888777766653 2
Q ss_pred CChHHHHHHHHHHHhhhccceecCC
Q 038978 209 ISKGKFINSHKNTFKAQKQFEWNTP 233 (260)
Q Consensus 209 ~~~~~~~~mr~~l~~~~~~~~y~~~ 233 (260)
..++...+|+++.. .+.|.|...
T Consensus 446 ~d~~~~~~l~~~~~--~~~fSw~~~ 468 (485)
T PRK14099 446 ADPVAWRRLQRNGM--TTDVSWRNP 468 (485)
T ss_pred cCHHHHHHHHHHhh--hhcCChHHH
Confidence 24567778887764 356777654
No 48
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.45 E-value=1.2 Score=40.07 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=48.2
Q ss_pred CceEEeecCCC-CCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHH
Q 038978 142 RSKFCICPGGS-LGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHK 219 (260)
Q Consensus 142 ~S~FCl~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~ 219 (260)
.+..++.|.-. +.....++|||.+|| |||.++.- +..+++.-. ...++..+. +.+.+..+. .++.+.+|.+
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDD--LASLLEELEADPEEVSAMAK 339 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchH--HHHHHHHHHhCHHHHHHHHH
Confidence 56666666544 444577999999999 77777632 234444432 233344442 333333331 3467777888
Q ss_pred HHHhhh-ccceec
Q 038978 220 NTFKAQ-KQFEWN 231 (260)
Q Consensus 220 ~l~~~~-~~~~y~ 231 (260)
+.++.. +.|.|+
T Consensus 340 ~~~~~~~~~fs~~ 352 (363)
T cd04955 340 AARERIREKYTWE 352 (363)
T ss_pred HHHHHHHHhCCHH
Confidence 777644 346664
No 49
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=88.63 E-value=1.2 Score=47.73 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=61.0
Q ss_pred EEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHHHHHHHHHh
Q 038978 145 FCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFINSHKNTFK 223 (260)
Q Consensus 145 FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~mr~~l~~ 223 (260)
.++.|.-..+...-+.|||++|+ |||.++.- ...++|.-..-.+.++..|...|.+.|..+. .++...+|.++.++
T Consensus 574 VFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 574 VFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred eeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 44456544555688999999995 99998742 3345555556677889888888887776653 56778889998887
Q ss_pred hhccceecC
Q 038978 224 AQKQFEWNT 232 (260)
Q Consensus 224 ~~~~~~y~~ 232 (260)
..+.|.|..
T Consensus 651 ~v~~FSWe~ 659 (1050)
T TIGR02468 651 NIHLFSWPE 659 (1050)
T ss_pred HHHHCCHHH
Confidence 777777764
No 50
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=88.52 E-value=0.55 Score=47.16 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=62.2
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecC-C-CCCC-CCCceEEEEc-------cccHhHHHHHHhcCCCh
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLP-F-NDIL-DWNKLSMIIR-------EDDVHRLNLILKGIISK 211 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lP-f-~~~i-dw~~fsv~i~-------~~~~~~l~~~L~~i~~~ 211 (260)
.+.-++.|.-..++..-..||+.+| +|||.++.--++ + .+++ +-....+.|. .+.+.+|.+.|..+...
T Consensus 474 g~dl~v~PS~yE~fG~~~lEAma~G-~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 474 GCHLGVFPSYYEPWGYTPAECTVMG-IPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL 552 (590)
T ss_pred hceEEEeccccCCCCcHHHHHHHcC-CCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC
Confidence 5666677776667678899999999 599999864432 0 1233 3334566665 23345666666654222
Q ss_pred HHHHHHHHH--HHhhhccceecCCCCCccHHHHHHH
Q 038978 212 GKFINSHKN--TFKAQKQFEWNTPPIKYGTTFHMVV 245 (260)
Q Consensus 212 ~~~~~mr~~--l~~~~~~~~y~~~~~~~D~af~~~~ 245 (260)
+..++|.++ ..+..+.|.|..-...|..|.++++
T Consensus 553 ~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 553 SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 333334443 3478888999875444433666655
No 51
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.22 E-value=1.1 Score=43.32 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=56.7
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCC------CceEEEEccccHhHHHHHHhcCC-ChHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDW------NKLSMIIREDDVHRLNLILKGII-SKGKF 214 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw------~~fsv~i~~~~~~~l~~~L~~i~-~~~~~ 214 (260)
.+..++.|.-......-++|||.+|| |||.+|.-- ..++++= ....+.++..|...+.+.+..+. +++..
T Consensus 370 ~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~--~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~ 446 (475)
T cd03813 370 KLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGS--CRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELR 446 (475)
T ss_pred hCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCC--hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHH
Confidence 56666666544444578999999998 888876321 2233322 24677888888887777776653 66778
Q ss_pred HHHHHHHHh-hhcccee
Q 038978 215 INSHKNTFK-AQKQFEW 230 (260)
Q Consensus 215 ~~mr~~l~~-~~~~~~y 230 (260)
.+|.++.++ +.+.|.|
T Consensus 447 ~~~~~~a~~~v~~~~s~ 463 (475)
T cd03813 447 RAMGEAGRKRVERYYTL 463 (475)
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 888887776 4444444
No 52
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=87.64 E-value=2.9 Score=38.51 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=50.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCCChH---HHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGIISKG---KFINSH 218 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~---~~~~mr 218 (260)
.+..++.|........-++|||++| +|||.++..-- ..+++.=..-.+.++..|..++.+.+..+..+. ....++
T Consensus 257 ~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~ 334 (359)
T PRK09922 257 NVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIP 334 (359)
T ss_pred cCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHH
Confidence 3566677766555568899999999 58888872211 224454344556668888887776666652222 234555
Q ss_pred HHHHhhh
Q 038978 219 KNTFKAQ 225 (260)
Q Consensus 219 ~~l~~~~ 225 (260)
+++++..
T Consensus 335 ~~~~~~~ 341 (359)
T PRK09922 335 NSIERFY 341 (359)
T ss_pred HHHHHhh
Confidence 5554433
No 53
>PHA01630 putative group 1 glycosyl transferase
Probab=87.31 E-value=1.6 Score=40.64 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=23.3
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeC
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISD 174 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d 174 (260)
.+..++.|.-......-+.|||++|| |||.++
T Consensus 209 ~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~ 240 (331)
T PHA01630 209 GCDILFYPVRGGAFEIPVIEALALGL-DVVVTE 240 (331)
T ss_pred hCCEEEECCccccCChHHHHHHHcCC-CEEEeC
Confidence 66777776544444577999999997 677776
No 54
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=87.10 E-value=1.4 Score=39.50 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=40.5
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
++.++++|.-......-+.|||.+|| |||.++.-. ..+++.- ........++..++.+.+..+
T Consensus 266 ~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 266 AMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred hcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 88888998776666789999999998 555665322 2233332 334445555556666655555
No 55
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=86.70 E-value=1.8 Score=41.78 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=53.4
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCC-CCC-----ceEEEEccccHhHHHHHHhcC----C-C
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDIL-DWN-----KLSMIIREDDVHRLNLILKGI----I-S 210 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~-----~fsv~i~~~~~~~l~~~L~~i----~-~ 210 (260)
.+.++++|.-..+...-..|||.+||.||. ++.- ...+++ |.+ ...+.+++.+...+.+.+..+ . .
T Consensus 365 ~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~ 441 (473)
T TIGR02095 365 GADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD 441 (473)
T ss_pred hCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC
Confidence 788899998777767788999999996654 4422 122222 221 456677777776665554443 1 3
Q ss_pred hHHHHHHHHHHHhhhccceecC
Q 038978 211 KGKFINSHKNTFKAQKQFEWNT 232 (260)
Q Consensus 211 ~~~~~~mr~~l~~~~~~~~y~~ 232 (260)
++...+|.++.. .+.|.|..
T Consensus 442 ~~~~~~~~~~~~--~~~fsw~~ 461 (473)
T TIGR02095 442 PSLWEALQKNAM--SQDFSWDK 461 (473)
T ss_pred HHHHHHHHHHHh--ccCCCcHH
Confidence 455667766553 34566653
No 56
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=86.68 E-value=0.69 Score=35.98 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=33.3
Q ss_pred CceEEeecCC-CCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 142 RSKFCICPGG-SLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 142 ~S~FCl~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
++.++++|.- +...+..++|++.+|| |||.++. ++++.+.-....+.+ ..+..++.+.|..+
T Consensus 70 ~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~~l 132 (135)
T PF13692_consen 70 AADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIERL 132 (135)
T ss_dssp C-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHHHHHH
T ss_pred hCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHHHHHH
Confidence 4677777753 2235689999999998 5565655 445444335566666 66666666665543
No 57
>PLN02949 transferase, transferring glycosyl groups
Probab=86.24 E-value=1.4 Score=42.94 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=50.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCC-CCC-ceEEEEccccHhHHHHHHhcCC--ChHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDIL-DWN-KLSMIIREDDVHRLNLILKGII--SKGKFINS 217 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~-~fsv~i~~~~~~~l~~~L~~i~--~~~~~~~m 217 (260)
++.+++.|.-+.....-..|||.+||+||.-... =|-++++ ++. .-.-++. .++..+.+.+..+. ++++..+|
T Consensus 354 ~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~~~~~r~~m 430 (463)
T PLN02949 354 GAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRMRETERLEI 430 (463)
T ss_pred hCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHHHHHHHHHHhCCHHHHHHH
Confidence 5677776665554557899999999877665322 1333332 111 1111122 25555555554441 45677789
Q ss_pred HHHHHhhhccceec
Q 038978 218 HKNTFKAQKQFEWN 231 (260)
Q Consensus 218 r~~l~~~~~~~~y~ 231 (260)
+++.++..++|.|.
T Consensus 431 ~~~ar~~~~~FS~e 444 (463)
T PLN02949 431 AAAARKRANRFSEQ 444 (463)
T ss_pred HHHHHHHHHHcCHH
Confidence 99888777777765
No 58
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=85.96 E-value=1.1 Score=42.07 Aligned_cols=91 Identities=13% Similarity=0.206 Sum_probs=50.6
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC--ChHHHHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII--SKGKFINSHK 219 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~--~~~~~~~mr~ 219 (260)
.+..++.|.-.......+.|||.+|| |||.++.-- ..+++.-.. .+.++. +...+.+.|..+. ..++...+++
T Consensus 269 ~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~~-~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~ 343 (398)
T cd03796 269 QGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPDM-ILLAEP-DVESIVRKLEEAISILRTGKHDPWS 343 (398)
T ss_pred hCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCCc-eeecCC-CHHHHHHHHHHHHhChhhhhhHHHH
Confidence 56667777544444578999999997 667776432 234444332 344443 5555444444331 2233233455
Q ss_pred HHHhhhccceecCCCCCc
Q 038978 220 NTFKAQKQFEWNTPPIKY 237 (260)
Q Consensus 220 ~l~~~~~~~~y~~~~~~~ 237 (260)
...++.++|.|.....++
T Consensus 344 ~~~~~~~~fs~~~~~~~~ 361 (398)
T cd03796 344 FHNRVKKMYSWEDVAKRT 361 (398)
T ss_pred HHHHHHhhCCHHHHHHHH
Confidence 556677888887554343
No 59
>PRK14098 glycogen synthase; Provisional
Probab=85.76 E-value=1.9 Score=42.19 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=54.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecC--CCCCCCCCceEEEEccccHhHHHHHHhcC----CChHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLP--FNDILDWNKLSMIIREDDVHRLNLILKGI----ISKGKFI 215 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lP--f~~~idw~~fsv~i~~~~~~~l~~~L~~i----~~~~~~~ 215 (260)
.+.++++|.-..+...-..|||.+||+||+...+- ++ ..+...-..-.+.++..+...+.+.|..+ ..+++..
T Consensus 381 ~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~ 459 (489)
T PRK14098 381 GLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-IVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWE 459 (489)
T ss_pred hCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-CceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHH
Confidence 78888898877666678899999999998765321 11 01111113345667777777666655432 1455666
Q ss_pred HHHHHHHhhhccceecCC
Q 038978 216 NSHKNTFKAQKQFEWNTP 233 (260)
Q Consensus 216 ~mr~~l~~~~~~~~y~~~ 233 (260)
+|+++. +.+.|.|...
T Consensus 460 ~~~~~~--~~~~fsw~~~ 475 (489)
T PRK14098 460 ELVLEA--MERDFSWKNS 475 (489)
T ss_pred HHHHHH--hcCCCChHHH
Confidence 665543 3356666543
No 60
>PRK00654 glgA glycogen synthase; Provisional
Probab=85.73 E-value=2.4 Score=40.96 Aligned_cols=86 Identities=10% Similarity=0.248 Sum_probs=53.3
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCC-CC-----CceEEEEccccHhHHHHHHhcC----CCh
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDIL-DW-----NKLSMIIREDDVHRLNLILKGI----ISK 211 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw-----~~fsv~i~~~~~~~l~~~L~~i----~~~ 211 (260)
.+.+++.|.=..+...-..|||.+||+||+ ++.-- ..|.+ |. +.-.+.++..+...+.+.|..+ ..+
T Consensus 356 ~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-~~~gG--~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~ 432 (466)
T PRK00654 356 GADMFLMPSRFEPCGLTQLYALRYGTLPIV-RRTGG--LADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQP 432 (466)
T ss_pred hCCEEEeCCCCCCchHHHHHHHHCCCCEEE-eCCCC--ccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCH
Confidence 788888887777777889999999998876 43211 12222 22 1446677887877666555443 124
Q ss_pred HHHHHHHHHHHhhhccceecC
Q 038978 212 GKFINSHKNTFKAQKQFEWNT 232 (260)
Q Consensus 212 ~~~~~mr~~l~~~~~~~~y~~ 232 (260)
+...+|.++.. .+.|.|..
T Consensus 433 ~~~~~~~~~~~--~~~fsw~~ 451 (466)
T PRK00654 433 PLWRALQRQAM--AQDFSWDK 451 (466)
T ss_pred HHHHHHHHHHh--ccCCChHH
Confidence 45666666553 25566653
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=83.23 E-value=3.7 Score=40.49 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=50.5
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCc-eecCCCCCCCCCceEEEEc----cc---c-HhHHHHHHhcCCChH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDF-HDLPFNDILDWNKLSMIIR----ED---D-VHRLNLILKGIISKG 212 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~-~~lPf~~~idw~~fsv~i~----~~---~-~~~l~~~L~~i~~~~ 212 (260)
.+.-++.|.-......-+.|||.+|| |||.+|- +-. .++|.=..-.+.++ +. + +..+.+.+..+..++
T Consensus 392 ~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 392 DYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred hCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChH
Confidence 34444444433334578999999997 7777762 221 23333333333444 12 2 455555444442566
Q ss_pred HHHHHHHHHHhhhccceec
Q 038978 213 KFINSHKNTFKAQKQFEWN 231 (260)
Q Consensus 213 ~~~~mr~~l~~~~~~~~y~ 231 (260)
...+|.++..+..+.|.|.
T Consensus 469 ~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 469 DIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 7889999998887776654
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.97 E-value=3.7 Score=36.62 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=56.4
Q ss_pred CceEEeecCC--CCCCchhHHHHHhhCceeEEeeCceecCCCCCC-CCCceEEEEccccHhHHHHHHhcCC-ChHHHHHH
Q 038978 142 RSKFCICPGG--SLGNFAQIVDSIHCGCVPVIISDFHDLPFNDIL-DWNKLSMIIREDDVHRLNLILKGII-SKGKFINS 217 (260)
Q Consensus 142 ~S~FCl~p~G--~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~m 217 (260)
.+..+++|.- .......+.||+.+|| |||.++.-..+ +.+ +.......++..+...+.+.+..+. .+++..+|
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~ 339 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERL 339 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHH
Confidence 6888888752 1223467999999985 77776632221 222 2355667778888887777777663 67788899
Q ss_pred HHHHHhhh-cccee
Q 038978 218 HKNTFKAQ-KQFEW 230 (260)
Q Consensus 218 r~~l~~~~-~~~~y 230 (260)
+++.++.. +.|.|
T Consensus 340 ~~~~~~~~~~~~s~ 353 (357)
T cd03795 340 GEAARERAEEEFTA 353 (357)
T ss_pred HHHHHHHHHHhcch
Confidence 99888754 55554
No 63
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=81.94 E-value=3.5 Score=39.15 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=46.9
Q ss_pred CceEEeecC----CCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-C---hHH
Q 038978 142 RSKFCICPG----GSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-S---KGK 213 (260)
Q Consensus 142 ~S~FCl~p~----G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~---~~~ 213 (260)
.+..+++|. |.+ ...-++|||.+|+ |||.++.-. ..+++.-..-.+.++ +...|.+.+..+. . +++
T Consensus 314 ~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PVI~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~ 387 (415)
T cd03816 314 SADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PVCALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGK 387 (415)
T ss_pred hCCEEEEccccccccC-CcHHHHHHHHcCC-CEEEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHH
Confidence 555555432 333 3567999999998 999987432 224443333333443 5655555554441 2 678
Q ss_pred HHHHHHHHHhhh
Q 038978 214 FINSHKNTFKAQ 225 (260)
Q Consensus 214 ~~~mr~~l~~~~ 225 (260)
..+|.++.++..
T Consensus 388 ~~~m~~~~~~~~ 399 (415)
T cd03816 388 LNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHHHhh
Confidence 888888887655
No 64
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=79.67 E-value=4.5 Score=38.68 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=51.2
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCC-CCCC-----ceEEEEccccHhHHHHHHhcC----CCh
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDI-LDWN-----KLSMIIREDDVHRLNLILKGI----ISK 211 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~-idw~-----~fsv~i~~~~~~~l~~~L~~i----~~~ 211 (260)
.+.+.+.|.-..+......|||.+||.||.-..+ ...+. .|.. .-.+.++..+...+.+.+..+ ..+
T Consensus 370 ~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~ 446 (476)
T cd03791 370 GADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDP 446 (476)
T ss_pred hCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCH
Confidence 6788888877666677889999999988753321 11222 2332 145667777776666555443 134
Q ss_pred HHHHHHHHHHHhhhccceec
Q 038978 212 GKFINSHKNTFKAQKQFEWN 231 (260)
Q Consensus 212 ~~~~~mr~~l~~~~~~~~y~ 231 (260)
+...+|.++..+ ..|.|+
T Consensus 447 ~~~~~~~~~~~~--~~fsw~ 464 (476)
T cd03791 447 EAWRKLQRNAMA--QDFSWD 464 (476)
T ss_pred HHHHHHHHHHhc--cCCChH
Confidence 666666666533 345554
No 65
>PLN02939 transferase, transferring glycosyl groups
Probab=73.84 E-value=11 Score=40.22 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=55.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCC--------ceEEEEccccHhHHHHHHhc----C-
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWN--------KLSMIIREDDVHRLNLILKG----I- 208 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~--------~fsv~i~~~~~~~l~~~L~~----i- 208 (260)
.|.++++|.=..+...-..+||.+||+||+...+= + -+-+.|++ .-.+.++..+...+.+.|.. +
T Consensus 856 aADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L-~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~ 933 (977)
T PLN02939 856 ASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-L-NDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYK 933 (977)
T ss_pred hCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-C-cceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhc
Confidence 78888888777777788999999999998753311 1 11122321 23455666676655544432 2
Q ss_pred CChHHHHHHHHHHHhhhccceecCCC
Q 038978 209 ISKGKFINSHKNTFKAQKQFEWNTPP 234 (260)
Q Consensus 209 ~~~~~~~~mr~~l~~~~~~~~y~~~~ 234 (260)
..++...+|+++. +.+.|.|....
T Consensus 934 ~dpe~~~~L~~~a--m~~dFSWe~~A 957 (977)
T PLN02939 934 RKPEVWKQLVQKD--MNIDFSWDSSA 957 (977)
T ss_pred cCHHHHHHHHHHH--HHhcCCHHHHH
Confidence 1467777887754 34667776543
No 66
>PLN00142 sucrose synthase
Probab=72.80 E-value=10 Score=39.74 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=56.3
Q ss_pred eEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHH----hcC-CChHHHHHHH
Q 038978 144 KFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLIL----KGI-ISKGKFINSH 218 (260)
Q Consensus 144 ~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L----~~i-~~~~~~~~mr 218 (260)
..+++|.-..+...-+.|||.+|| |||.++.--+ .++|.-..-.+.|+..+...+.+.| +.+ ..++...+|.
T Consensus 668 DVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg 744 (815)
T PLN00142 668 GAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKIS 744 (815)
T ss_pred CEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344567655555688999999996 7887764222 2344445566778877776554443 322 2677778888
Q ss_pred HHHH-hhhccceecCC
Q 038978 219 KNTF-KAQKQFEWNTP 233 (260)
Q Consensus 219 ~~l~-~~~~~~~y~~~ 233 (260)
++.+ ++.++|.|...
T Consensus 745 ~~Ar~rv~e~FSWe~~ 760 (815)
T PLN00142 745 DAGLQRIYECYTWKIY 760 (815)
T ss_pred HHHHHHHHHhCCHHHH
Confidence 8764 46678888653
No 67
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.66 E-value=9.3 Score=38.51 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=37.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRL 201 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l 201 (260)
.+..++.|.-......-+.|||.+|| |||.++.--. .++|.-..-.+.++..|...+
T Consensus 472 aADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 472 KMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhH
Confidence 55555556555556789999999998 9998874322 244444455566777665443
No 68
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=67.56 E-value=11 Score=33.99 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=45.9
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCC-----CCCCCCceEEEEcccc--HhHHHHHHhcCC-ChHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFN-----DILDWNKLSMIIREDD--VHRLNLILKGII-SKGK 213 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~-----~~idw~~fsv~i~~~~--~~~l~~~L~~i~-~~~~ 213 (260)
.+..++.+.| ..-++||+.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ...|.+.|+.+. .++.
T Consensus 250 ~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~ 324 (348)
T TIGR01133 250 AADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPAN 324 (348)
T ss_pred hCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHH
Confidence 6777777765 246899999995 7777531100001 1233345555666554 666666666552 5666
Q ss_pred HHHHHHHHHh
Q 038978 214 FINSHKNTFK 223 (260)
Q Consensus 214 ~~~mr~~l~~ 223 (260)
..+|.++.++
T Consensus 325 ~~~~~~~~~~ 334 (348)
T TIGR01133 325 LEAMAEAARK 334 (348)
T ss_pred HHHHHHHHHh
Confidence 7778777754
No 69
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=67.37 E-value=6.2 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=24.2
Q ss_pred CCCCcchhHHHHHHHHhcCCcccCCcCCcceEEEe
Q 038978 15 KLKRKFAIEGYFFKKIRESRFLTTDPAKAHLFFIP 49 (260)
Q Consensus 15 ~~~~~y~~E~~f~~~l~~s~~~T~dP~eA~lF~vP 49 (260)
|..++|.+|.+.-..-...--.|.+|++||+++|=
T Consensus 9 C~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 9 CQMNQYDSERIASILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred CcccHHHHHHHHHHHHhcCCeeecccccCCEEEEE
Confidence 44577777765443333334689999999999884
No 70
>PLN02316 synthase/transferase
Probab=66.31 E-value=9.4 Score=41.11 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=54.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCC------------CceEEEEccccHhHHHHHHhcCC
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDW------------NKLSMIIREDDVHRLNLILKGII 209 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw------------~~fsv~i~~~~~~~l~~~L~~i~ 209 (260)
.+.+.++|.=..+...-..+||.+||+||+-..+ -+| +-+.|+ ..--+.++..+...|...|....
T Consensus 919 aADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL 996 (1036)
T PLN02316 919 GADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAI 996 (1036)
T ss_pred hCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHH
Confidence 7888888887777778899999999999995332 111 112233 13456677777765444433320
Q ss_pred C--hHHHHHHHHHHHh-hhccceecCCC
Q 038978 210 S--KGKFINSHKNTFK-AQKQFEWNTPP 234 (260)
Q Consensus 210 ~--~~~~~~mr~~l~~-~~~~~~y~~~~ 234 (260)
. .+....|++..++ +.+.|.|....
T Consensus 997 ~~~~~~~~~~~~~~r~~m~~dFSW~~~A 1024 (1036)
T PLN02316 997 SAWYDGRDWFNSLCKRVMEQDWSWNRPA 1024 (1036)
T ss_pred hhhhhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 1 2233334544444 34668887653
No 71
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=65.09 E-value=7.1 Score=36.33 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=35.0
Q ss_pred CceEEeecCCCC-----CCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhc
Q 038978 142 RSKFCICPGGSL-----GNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKG 207 (260)
Q Consensus 142 ~S~FCl~p~G~~-----~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~ 207 (260)
.+..|++|.-.. .....++|+|++|+ |||.++ +.++.+...-.+.+ ..+..++.+.++.
T Consensus 273 ~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 273 GFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred hCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 788999985422 22357999999996 788654 23333333333333 3456555555554
No 72
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=64.35 E-value=10 Score=36.25 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=46.3
Q ss_pred CceEEeecCC---CCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEcc-ccHhHHHHHHhcCCChHHHHH
Q 038978 142 RSKFCICPGG---SLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIRE-DDVHRLNLILKGIISKGKFIN 216 (260)
Q Consensus 142 ~S~FCl~p~G---~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~-~~~~~l~~~L~~i~~~~~~~~ 216 (260)
.=||-|.-.. ...-+-.|+.|+.+|.|||+++......| ++ .+.-|.|+. ..+.+|.+.|+.+ .+.+.+-
T Consensus 250 ~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~ylk~L-~~n~~~Y 323 (372)
T KOG2619|consen 250 HYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYLKKL-DKNPAAY 323 (372)
T ss_pred cceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHHHHh-hcCHHHH
Confidence 6677776432 34557889999999999999998554444 34 444445443 3456888889888 5444433
No 73
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=62.12 E-value=21 Score=34.10 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=52.6
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeC-----ceecCCCCCCCCCceEEEEccccHhHHHHHHhcCC-ChHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISD-----FHDLPFNDILDWNKLSMIIREDDVHRLNLILKGII-SKGKFI 215 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d-----~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~ 215 (260)
++++.+.-.=+...-...+|+|++|.|||.=.. +++.|++. +-.=+..+++......+|+-+. +.++..
T Consensus 356 ~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G-----~~tGFla~t~~EYaE~iLkIv~~~~~~r~ 430 (465)
T KOG1387|consen 356 KATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDG-----ETTGFLAPTDEEYAEAILKIVKLNYDERN 430 (465)
T ss_pred cceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCC-----ccceeecCChHHHHHHHHHHHHcCHHHHH
Confidence 777777665555556889999999999987533 35555532 2333455555544444444432 556677
Q ss_pred HHHHHHHhhhccce
Q 038978 216 NSHKNTFKAQKQFE 229 (260)
Q Consensus 216 ~mr~~l~~~~~~~~ 229 (260)
.||++-+...-+|.
T Consensus 431 ~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 431 MMRRNARKSLARFG 444 (465)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888877665643
No 74
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=61.13 E-value=23 Score=37.13 Aligned_cols=87 Identities=9% Similarity=0.152 Sum_probs=57.4
Q ss_pred eEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-----CChHHHHHHH
Q 038978 144 KFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-----ISKGKFINSH 218 (260)
Q Consensus 144 ~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-----~~~~~~~~mr 218 (260)
..+++|.-..+...-+.|||.+|| |||.++.=-+ .++|.-..-.+.|+..|...+.+.|..+ ..++...+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 355667666666788999999997 5666653211 2334445566778888877665554432 2677788888
Q ss_pred HHHHh-hhccceecCC
Q 038978 219 KNTFK-AQKQFEWNTP 233 (260)
Q Consensus 219 ~~l~~-~~~~~~y~~~ 233 (260)
++.++ +.++|.|...
T Consensus 722 ~~a~~rV~~~FSW~~~ 737 (784)
T TIGR02470 722 QGGLQRIYEKYTWKIY 737 (784)
T ss_pred HHHHHHHHHhCCHHHH
Confidence 88654 6788988753
No 75
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=60.41 E-value=18 Score=34.05 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=45.2
Q ss_pred CceEEeecCCC-CCCchhHHHHHhhCceeEEeeCceecCCCCCC---CCCceEEEEccccHhHHHHHHhcCC-ChHHHHH
Q 038978 142 RSKFCICPGGS-LGNFAQIVDSIHCGCVPVIISDFHDLPFNDIL---DWNKLSMIIREDDVHRLNLILKGII-SKGKFIN 216 (260)
Q Consensus 142 ~S~FCl~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i---dw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~~ 216 (260)
.+..|+++... ..+..-+.||+.+|| |||.++... -+.++. .-..+.+. ..|...|.+.|..+. .++...+
T Consensus 319 ~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~~--~~d~~~La~~l~~ll~~~~~~~~ 394 (425)
T PRK05749 319 IADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAIQ--VEDAEDLAKAVTYLLTDPDARQA 394 (425)
T ss_pred hCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeEE--ECCHHHHHHHHHHHhcCHHHHHH
Confidence 55655554221 112345899999996 888865421 122211 11233333 445666666555542 4677788
Q ss_pred HHHHHHhhhcc
Q 038978 217 SHKNTFKAQKQ 227 (260)
Q Consensus 217 mr~~l~~~~~~ 227 (260)
|.++.++....
T Consensus 395 m~~~a~~~~~~ 405 (425)
T PRK05749 395 YGEAGVAFLKQ 405 (425)
T ss_pred HHHHHHHHHHh
Confidence 88887765544
No 76
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=57.88 E-value=12 Score=36.32 Aligned_cols=82 Identities=9% Similarity=0.070 Sum_probs=50.2
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCce---eEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-C-ChHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCV---PVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-I-SKGKFIN 216 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCI---PVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~-~~~~~~~ 216 (260)
.+.-++.|.-......-..|||.+||= |||+++.--.+-+ ..-.+.|+..|...+.+.|..+ . ++++..+
T Consensus 360 ~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~ 434 (460)
T cd03788 360 AADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRALTMPLEERRE 434 (460)
T ss_pred hccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 444555554333334678899999996 6899874322211 2336778888887776655443 1 5667777
Q ss_pred HHHHHHhhhccc
Q 038978 217 SHKNTFKAQKQF 228 (260)
Q Consensus 217 mr~~l~~~~~~~ 228 (260)
|.++.++....+
T Consensus 435 ~~~~~~~~v~~~ 446 (460)
T cd03788 435 RHRKLREYVRTH 446 (460)
T ss_pred HHHHHHHHHHhC
Confidence 777766655443
No 77
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=55.40 E-value=28 Score=29.50 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=43.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCCC-hHHHHHHHH-
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGIIS-KGKFINSHK- 219 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~-~~~~~~mr~- 219 (260)
.+...+.|.-......-+.||+.+| +|||.++.- .. .+.+.-....+.+...+...+.+.+..+.. .+...++.+
T Consensus 276 ~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~~-~~-~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 352 (381)
T COG0438 276 SADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDVG-GI-PEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEA 352 (381)
T ss_pred hCCEEEeccccccchHHHHHHHhcC-CcEEECCCC-Ch-HHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4777777743322224489999999 999887643 11 222222212223333355555544444411 223444443
Q ss_pred HHHhhhccceec
Q 038978 220 NTFKAQKQFEWN 231 (260)
Q Consensus 220 ~l~~~~~~~~y~ 231 (260)
....+...+.|.
T Consensus 353 ~~~~~~~~~~~~ 364 (381)
T COG0438 353 ARERVEEEFSWE 364 (381)
T ss_pred HHHHHHHhcCHH
Confidence 233333455554
No 78
>PRK10125 putative glycosyl transferase; Provisional
Probab=52.66 E-value=42 Score=31.93 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=39.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLI 204 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~ 204 (260)
.+...+.|.-......-+.|||++|| |||.+|.=-. .++++-. -.+.++..|...|.+.
T Consensus 306 ~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~--~Eiv~~~-~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 306 QMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAA--REVLQKS-GGKTVSEEEVLQLAQL 364 (405)
T ss_pred hCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCCh--HHhEeCC-cEEEECCCCHHHHHhc
Confidence 35555566555555688999999995 8988874332 3345433 5778889898777753
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=52.33 E-value=40 Score=31.46 Aligned_cols=72 Identities=17% Similarity=0.356 Sum_probs=42.3
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCC------CCCCceEEEEccccHhHHHHHHhcCC-C-hHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDI------LDWNKLSMIIREDDVHRLNLILKGII-S-KGK 213 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~------idw~~fsv~i~~~~~~~l~~~L~~i~-~-~~~ 213 (260)
.|...+.+.|. .-+.||+.+|| |||+.+. .|-+++ ++ ....+.+ .+...|.+.+..+. . ++.
T Consensus 282 aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~ll~~~~~~ 351 (382)
T PLN02605 282 ACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEWFGDKSDE 351 (382)
T ss_pred hCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHHHcCCHHH
Confidence 56666666652 24899999996 7887763 233332 22 3444443 45555555555442 3 667
Q ss_pred HHHHHHHHHh
Q 038978 214 FINSHKNTFK 223 (260)
Q Consensus 214 ~~~mr~~l~~ 223 (260)
.++|+++.++
T Consensus 352 ~~~m~~~~~~ 361 (382)
T PLN02605 352 LEAMSENALK 361 (382)
T ss_pred HHHHHHHHHH
Confidence 7788777754
No 80
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=47.89 E-value=15 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.435 Sum_probs=28.4
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEee
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIIS 173 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~ 173 (260)
..+|||+..|.+..-...||+=..+.|||+=.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 67899999998888899999999999999854
No 81
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=47.16 E-value=44 Score=30.43 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=45.3
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCc-eecC-----CCCCCCCCceEEEEcccc--HhHHHHHHhcCC-ChH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDF-HDLP-----FNDILDWNKLSMIIREDD--VHRLNLILKGII-SKG 212 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~-~~lP-----f~~~idw~~fsv~i~~~~--~~~l~~~L~~i~-~~~ 212 (260)
.+..+++..| ..-++||+.+|+ |||+... .... ..+.+--....+.++.++ ...|.+.++.+. .++
T Consensus 252 ~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~ 326 (357)
T PRK00726 252 AADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPE 326 (357)
T ss_pred hCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHH
Confidence 6777777665 255899999997 5555432 1110 011222234567777766 567777666653 456
Q ss_pred HHHHHHHHHHh
Q 038978 213 KFINSHKNTFK 223 (260)
Q Consensus 213 ~~~~mr~~l~~ 223 (260)
...+|+++.++
T Consensus 327 ~~~~~~~~~~~ 337 (357)
T PRK00726 327 RLEAMAEAARA 337 (357)
T ss_pred HHHHHHHHHHh
Confidence 66777777643
No 82
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=44.95 E-value=61 Score=31.57 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=46.9
Q ss_pred CceEEeecC-CCCCCchhHHHHHhhCcee----EEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcC-C-ChHHH
Q 038978 142 RSKFCICPG-GSLGNFAQIVDSIHCGCVP----VIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGI-I-SKGKF 214 (260)
Q Consensus 142 ~S~FCl~p~-G~~~~s~rl~dal~~GCIP----Vii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~-~~~~~ 214 (260)
.+.-|++|. .++. ..-..|||++|+ | ||+++.--.+ +.+. -++.|+..|...+.+.|..+ . ++++.
T Consensus 355 aaDv~vv~S~~EG~-~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er 427 (456)
T TIGR02400 355 AADVGLVTPLRDGM-NLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARALTMPLEER 427 (456)
T ss_pred hCcEEEECcccccc-CccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHH
Confidence 555566554 4454 477999999996 8 8888743211 1222 36778888887766655443 1 55555
Q ss_pred HHHHHHHHhhh
Q 038978 215 INSHKNTFKAQ 225 (260)
Q Consensus 215 ~~mr~~l~~~~ 225 (260)
.++.+++++..
T Consensus 428 ~~r~~~~~~~v 438 (456)
T TIGR02400 428 EERHRAMMDKL 438 (456)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 83
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=43.09 E-value=27 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=26.8
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCc
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDF 175 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~ 175 (260)
.|..+++|......+..++||+.+|| |||.++.
T Consensus 181 ~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~~ 213 (229)
T cd01635 181 AADVFVLPSLREGFGLVVLEAMACGL-PVIATDV 213 (229)
T ss_pred cCCEEEecccccCcChHHHHHHhCCC-CEEEcCC
Confidence 48999999887778899999999986 5555553
No 84
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=42.14 E-value=69 Score=30.08 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=46.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCC-----CCCceEEEEccccHhHHHHHHhcCC-ChHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDIL-----DWNKLSMIIREDDVHRLNLILKGII-SKGKFI 215 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-----dw~~fsv~i~~~~~~~l~~~L~~i~-~~~~~~ 215 (260)
.|.+++..+| ..-+.||+.+|+ |||+.+.. |-++.. .=..+.+.+. +..++.+.+..+. .++.+.
T Consensus 273 ~aDl~I~k~g----g~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~ll~~~~~~~ 343 (391)
T PRK13608 273 SSQLMITKPG----GITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIAD--TPEEAIKIVASLTNGNEQLT 343 (391)
T ss_pred hhhEEEeCCc----hHHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHHhcCHHHHH
Confidence 6677666444 235899999995 88887632 333321 1233444432 4445555555442 567888
Q ss_pred HHHHHHHhhhcc
Q 038978 216 NSHKNTFKAQKQ 227 (260)
Q Consensus 216 ~mr~~l~~~~~~ 227 (260)
+|+++..+..+.
T Consensus 344 ~m~~~~~~~~~~ 355 (391)
T PRK13608 344 NMISTMEQDKIK 355 (391)
T ss_pred HHHHHHHHhcCC
Confidence 999988776554
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.88 E-value=86 Score=32.46 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccH------hHHHHHHhcCCChHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDV------HRLNLILKGIISKGKFI 215 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~------~~l~~~L~~i~~~~~~~ 215 (260)
.+...+.|.-......-++|||.+|| |||.++.-- ..++|.-..-.+.++..+. ..|.+++... .. -.
T Consensus 591 aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l-~~--~~ 664 (694)
T PRK15179 591 QFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC-AA--DP 664 (694)
T ss_pred hcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh-hc--cH
Confidence 34444455444445788999999995 888877422 2344444444556665543 2444444443 21 13
Q ss_pred HHHHHHHh-hhccceec
Q 038978 216 NSHKNTFK-AQKQFEWN 231 (260)
Q Consensus 216 ~mr~~l~~-~~~~~~y~ 231 (260)
+|+++.++ +.+.|.|.
T Consensus 665 ~l~~~ar~~a~~~FS~~ 681 (694)
T PRK15179 665 GIARKAADWASARFSLN 681 (694)
T ss_pred HHHHHHHHHHHHhCCHH
Confidence 45555544 44566654
No 86
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=33.11 E-value=1.2e+02 Score=27.82 Aligned_cols=80 Identities=10% Similarity=0.094 Sum_probs=43.9
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCC----CCCCCce------------E--EEEccccHhHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFND----ILDWNKL------------S--MIIREDDVHRLNL 203 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~----~idw~~f------------s--v~i~~~~~~~l~~ 203 (260)
.+..++++.|. -..||+.+|| |||+.... -||.. .+....+ . +..++.+..+|.+
T Consensus 261 ~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (380)
T PRK00025 261 AADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLAR 333 (380)
T ss_pred hCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHH
Confidence 67777777652 2459999996 77776432 12220 0001111 1 1223334455655
Q ss_pred HHhcCC-ChHHHHHHHHHHHhhhccc
Q 038978 204 ILKGII-SKGKFINSHKNTFKAQKQF 228 (260)
Q Consensus 204 ~L~~i~-~~~~~~~mr~~l~~~~~~~ 228 (260)
.+..+. .++...+|.++..++.+.+
T Consensus 334 ~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 334 ALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 555542 5677778888887776654
No 87
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.97 E-value=1.3e+02 Score=27.04 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=44.7
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCcee-------cCCCCCCCCCceEEEEccc--cHhHHHHHHhcCC-Ch
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHD-------LPFNDILDWNKLSMIIRED--DVHRLNLILKGII-SK 211 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~-------lPf~~~idw~~fsv~i~~~--~~~~l~~~L~~i~-~~ 211 (260)
.+.+.+++.| ..-+.|||.+|+ |||+.+.-. .+.+.+.+ ....+.++.. +...|.+.++.+. ++
T Consensus 252 ~ad~~v~~sg----~~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 252 AADLVISRAG----ASTVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred hcCEEEECCC----HhHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 5666666665 244899999996 566543210 01112222 3456666655 6667776666552 55
Q ss_pred HHHHHHHHHHHhh
Q 038978 212 GKFINSHKNTFKA 224 (260)
Q Consensus 212 ~~~~~mr~~l~~~ 224 (260)
+...+|+++.++.
T Consensus 326 ~~~~~~~~~~~~~ 338 (350)
T cd03785 326 ERLKAMAEAARSL 338 (350)
T ss_pred HHHHHHHHHHHhc
Confidence 6777787776543
No 88
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.95 E-value=34 Score=23.02 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=26.2
Q ss_pred CceEEeecCCC-CCCchhHHHHHhhCceeEEeeCceecCCC
Q 038978 142 RSKFCICPGGS-LGNFAQIVDSIHCGCVPVIISDFHDLPFN 181 (260)
Q Consensus 142 ~S~FCl~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~ 181 (260)
+|+||+.|-.. +..|+|-|-.-..||----+ -.||.+
T Consensus 8 qsrfcifpltfkssasprkfltnvtgccsatv---trlpls 45 (59)
T PF07038_consen 8 QSRFCIFPLTFKSSASPRKFLTNVTGCCSATV---TRLPLS 45 (59)
T ss_pred eeeeEEEEeeeccCCChHHHhhcccceeeeeE---Eeccch
Confidence 58999999764 44578888888889975443 245554
No 89
>COG3651 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.84 E-value=81 Score=24.78 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCCceecCCCCCCccccCCCCCCCCCceEEeecCCCCCCchhHHHHHhhCceeEEe
Q 038978 117 RHKGVSLPQIIPPFLLYAGGNDFEDRSKFCICPGGSLGNFAQIVDSIHCGCVPVII 172 (260)
Q Consensus 117 ~~kDv~iP~~~~~l~~f~gg~~~~~~S~FCl~p~G~~~~s~rl~dal~~GCIPVii 172 (260)
+|+|+++|.+.-.++...- ..++|||. .|.-||+.+|--|-++
T Consensus 60 ~GNDLSt~rP~~~fpglkp------gdrwclca-------arwqealdagmap~v~ 102 (125)
T COG3651 60 RGNDLSTPRPPYWFPGLKP------GDRWCLCA-------ARWQEALDAGMAPPVI 102 (125)
T ss_pred cCCCCCCCCCcccCCCCCC------CCeeeeeH-------HHHHHHHhcCCCCcee
Confidence 4999999986633332211 37899996 5778999999887655
No 90
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=27.86 E-value=1.6e+02 Score=20.12 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHhhCceeEEeeCcee---cCCCCCCCCCceEEEEccccHhHHHHHHhcC
Q 038978 159 IVDSIHCGCVPVIISDFHD---LPFNDILDWNKLSMIIREDDVHRLNLILKGI 208 (260)
Q Consensus 159 l~dal~~GCIPVii~d~~~---lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 208 (260)
+-+.|..-=||.++.+... .++.....| ..|.|+++|..+-.++|+.+
T Consensus 15 i~~~L~~~gI~~~v~~~~~~~~~g~~g~~~~--~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 15 IKGLLEENGIPAFVKNEHMSGYAGEPGTGGQ--VEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp HHHHHHHTT--EE--S----SS---S--SSS--EEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEECCccchhhcccCccCc--eEEEECHHHHHHHHHHHHHh
Confidence 3455677789999987432 222333344 99999999999999999876
No 91
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=26.16 E-value=52 Score=25.45 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=21.0
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeC
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISD 174 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d 174 (260)
+|-||||=+-+++.|+--.-+=-+..+|.+++.
T Consensus 15 sscfclccprhrp~srla~~~gg~aavp~vvsg 47 (114)
T PF02444_consen 15 SSCFCLCCPRHRPVSRLAAVAGGAAAVPAVVSG 47 (114)
T ss_pred ccceeeecCCCCcHHHHHHHhccccccceeeec
Confidence 699999866666654322222334478888875
No 92
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.54 E-value=73 Score=30.96 Aligned_cols=34 Identities=6% Similarity=-0.096 Sum_probs=24.8
Q ss_pred CCCCcchhHHHHHHHHhcCC-cccCCcCCcceEEEe
Q 038978 15 KLKRKFAIEGYFFKKIRESR-FLTTDPAKAHLFFIP 49 (260)
Q Consensus 15 ~~~~~y~~E~~f~~~l~~s~-~~T~dP~eA~lF~vP 49 (260)
|..+||.+|.+.-. |.+.. -.|.+|++||+.+|=
T Consensus 10 C~~N~~dse~~~~~-l~~~G~~~~~~~~~ADv~iiN 44 (455)
T PRK14335 10 CQMNVAESASMEQL-LLARGWTKAVDAETCDVLIIN 44 (455)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe
Confidence 45688888876554 44444 478899999999984
No 93
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.39 E-value=1.6e+02 Score=31.00 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=47.1
Q ss_pred CceEEeecC-CCCCCchhHHHHHhhCce---eEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhc-CC-ChHHHH
Q 038978 142 RSKFCICPG-GSLGNFAQIVDSIHCGCV---PVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKG-II-SKGKFI 215 (260)
Q Consensus 142 ~S~FCl~p~-G~~~~s~rl~dal~~GCI---PVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~-i~-~~~~~~ 215 (260)
.+.-|++|. -+|. ..-..|||.+|+- ++|+++.--.+ +++ ..-++.|+..|...+.+.+.. +. ++++..
T Consensus 375 ~ADvfvvtSlrEGm-nLv~lEamA~g~p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~ 449 (797)
T PLN03063 375 ITDVMLVTSLRDGM-NLVSYEFVACQKAKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEALNMSDEERE 449 (797)
T ss_pred hCCEEEeCcccccc-CcchhhHheeecCCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHH
Confidence 566666665 3444 4668999999983 27777632111 112 345888998888766654433 22 555555
Q ss_pred HHHHHHHhhhcc
Q 038978 216 NSHKNTFKAQKQ 227 (260)
Q Consensus 216 ~mr~~l~~~~~~ 227 (260)
++.+++.+....
T Consensus 450 ~r~~~~~~~v~~ 461 (797)
T PLN03063 450 TRHRHNFQYVKT 461 (797)
T ss_pred HHHHHHHHhhhh
Confidence 555555444444
No 94
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=24.77 E-value=1.3e+02 Score=20.91 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=26.6
Q ss_pred CCCceEEEEccccHhHHHHHHhcCCChHHHHHHHHHHHhhh
Q 038978 185 DWNKLSMIIREDDVHRLNLILKGIISKGKFINSHKNTFKAQ 225 (260)
Q Consensus 185 dw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~~mr~~l~~~~ 225 (260)
++++.|-.+.++++.++..-|..+.+.+++-.+..++..+-
T Consensus 2 ~~~Dls~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~~e 42 (61)
T TIGR01639 2 KYNDLSKKLSKEELNELINSLDEIPNRNDMLIIWNQVHGIE 42 (61)
T ss_pred ChhHHhHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 56666777777777766666666656666666666655443
No 95
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=24.76 E-value=37 Score=31.70 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=59.9
Q ss_pred CCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhcCCChHHHHHHHHHHH
Q 038978 150 GGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKGIISKGKFINSHKNTF 222 (260)
Q Consensus 150 ~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~~mr~~l~ 222 (260)
.|-+..-+.+++.+.---|+|=+|---.--|.|+++++++-|....+-...|.+.=+++ +++++.++.++.-
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl-~D~qlkaI~~~gG 216 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNL-SDEQLKAIAETGG 216 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCC-CHHHHHHHHhcCC
Confidence 45556668888888888888888776677789999999999999999988888888898 9999888887653
No 96
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=24.42 E-value=2.4e+02 Score=22.47 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=37.9
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCCCCCC--CceEEEEccccHhHHHHHHh
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFNDILDW--NKLSMIIREDDVHRLNLILK 206 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw--~~fsv~i~~~~~~~l~~~L~ 206 (260)
+.+..||.+|.-........|..+|..-|||.++-.-+.....+. .--++.|..++-.+|.+.|+
T Consensus 47 ~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 47 KGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred cceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHh
Confidence 578889988865434567778999999999975442221111111 11234555555555555554
No 97
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=24.14 E-value=1.3e+02 Score=19.43 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=32.7
Q ss_pred chhHHHHHhhCceeEEeeCceecCCCCCCCCCceEEEEccccHhHHHHHHhc
Q 038978 156 FAQIVDSIHCGCVPVIISDFHDLPFNDILDWNKLSMIIREDDVHRLNLILKG 207 (260)
Q Consensus 156 s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~ 207 (260)
..++++++.-..|+|..-.. ++ .++++.|++++..++.++|.+
T Consensus 17 ~~~i~~~L~~~~i~v~~i~~-----s~----~~is~~v~~~d~~~~~~~l~~ 59 (63)
T cd04936 17 AAKMFEALAEAGINIEMIST-----SE----IKISCLIDEDDAEKAVRALHE 59 (63)
T ss_pred HHHHHHHHHHCCCcEEEEEc-----cC----ceEEEEEeHHHHHHHHHHHHH
Confidence 46899999999999976541 11 778999999998777666653
No 98
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=24.13 E-value=38 Score=25.15 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=8.8
Q ss_pred CCCCCeeeecc
Q 038978 82 TQGADHFFVTC 92 (260)
Q Consensus 82 ~~G~DH~~~~~ 92 (260)
.-|||||+++-
T Consensus 45 ~aGRDhiiisD 55 (81)
T PF09671_consen 45 AAGRDHIIISD 55 (81)
T ss_pred hcCcceEEEeC
Confidence 35999999964
No 99
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.81 E-value=2e+02 Score=27.50 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=47.5
Q ss_pred chhHHHHHhhCceeEEeeCcee---cCCCCCCCCCceEEEEccccHhHHHHHHhcCCChHHHHHHHHHHHhhhccceec
Q 038978 156 FAQIVDSIHCGCVPVIISDFHD---LPFNDILDWNKLSMIIREDDVHRLNLILKGIISKGKFINSHKNTFKAQKQFEWN 231 (260)
Q Consensus 156 s~rl~dal~~GCIPVii~d~~~---lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~~mr~~l~~~~~~~~y~ 231 (260)
+.|.||++.+|- | .+++.|. .=|. |=+++.|.-+..|+.++.+.|-+. ++++.+-=..++.++.....|.
T Consensus 277 ~~RvFeiagc~~-~-liT~~~~~~e~~f~---pgk~~iv~~d~kdl~~~~~yll~h-~~erkeiae~~ye~V~~~ht~~ 349 (373)
T COG4641 277 TNRVFEIAGCGG-F-LITDYWKDLEKFFK---PGKDIIVYQDSKDLKEKLKYLLNH-PDERKEIAECAYERVLARHTYE 349 (373)
T ss_pred hhhHHHHhhcCC-c-cccccHHHHHHhcC---CchheEEecCHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHhccHH
Confidence 699999999997 4 4455331 1122 225667777778888888888888 6666655566777787776554
No 100
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=22.90 E-value=41 Score=24.95 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=8.2
Q ss_pred CCCCeeeecc
Q 038978 83 QGADHFFVTC 92 (260)
Q Consensus 83 ~G~DH~~~~~ 92 (260)
.||||++++-
T Consensus 44 AGRDhiiisd 53 (82)
T TIGR02728 44 AGRDHIVISD 53 (82)
T ss_pred cCcceEEEcC
Confidence 4999999853
No 101
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.39 E-value=90 Score=30.29 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=25.5
Q ss_pred CCCCcchhHHHHHHHHhcCCc-ccCCcCCcceEEEe
Q 038978 15 KLKRKFAIEGYFFKKIRESRF-LTTDPAKAHLFFIP 49 (260)
Q Consensus 15 ~~~~~y~~E~~f~~~l~~s~~-~T~dP~eA~lF~vP 49 (260)
|..++|.+|.+.-. |....| .|+++++||+.+|=
T Consensus 16 C~~N~~dse~~~~~-l~~~G~~~~~~~~~ADviiiN 50 (445)
T PRK14340 16 CQMNQADSEIITAL-LQDEGYVPAASEEDADIVLLN 50 (445)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEE
Confidence 55688888876554 554544 78889999999984
No 102
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.24 E-value=93 Score=29.88 Aligned_cols=35 Identities=11% Similarity=-0.146 Sum_probs=25.3
Q ss_pred CCCCcchhHHHHHHHHhcCCcccCCcCCcceEEEe
Q 038978 15 KLKRKFAIEGYFFKKIRESRFLTTDPAKAHLFFIP 49 (260)
Q Consensus 15 ~~~~~y~~E~~f~~~l~~s~~~T~dP~eA~lF~vP 49 (260)
|..+||.+|.+.-.....---.|.++++||+.+|=
T Consensus 11 C~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiN 45 (418)
T PRK14336 11 CQMNQAESERLGRLFELWGYSLADKAEDAELVLVN 45 (418)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEe
Confidence 45688888877654443433488889999999984
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=22.12 E-value=1.4e+02 Score=29.09 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=51.0
Q ss_pred eecCCCCCCchhHHHHHhhCceeEEeeCcee---cCCCCCCCCCceEEEEccccH-hHHHHHHhcCCChHHHHHHHHHHH
Q 038978 147 ICPGGSLGNFAQIVDSIHCGCVPVIISDFHD---LPFNDILDWNKLSMIIREDDV-HRLNLILKGIISKGKFINSHKNTF 222 (260)
Q Consensus 147 l~p~G~~~~s~rl~dal~~GCIPVii~d~~~---lPf~~~idw~~fsv~i~~~~~-~~l~~~L~~i~~~~~~~~mr~~l~ 222 (260)
|+|.|. .-+.|+.+.|| |||++.+.. -=|+.+ -=+...+.|...+. ..+.+.|.+ +++...+|.+++.
T Consensus 327 lv~~GG----HN~LEpa~~~~-pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~~~~~l~~~v~~l~~--~~~~r~~~~~~~~ 398 (419)
T COG1519 327 LVPIGG----HNPLEPAAFGT-PVIFGPYTFNFSDIAERL-LQAGAGLQVEDADLLAKAVELLLA--DEDKREAYGRAGL 398 (419)
T ss_pred ccCCCC----CChhhHHHcCC-CEEeCCccccHHHHHHHH-HhcCCeEEECCHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 666553 34889999996 899987542 111111 22456677777443 466666665 4777777877776
Q ss_pred hhhccceecCCCCCccHHHHHHHHHH
Q 038978 223 KAQKQFEWNTPPIKYGTTFHMVVYEL 248 (260)
Q Consensus 223 ~~~~~~~y~~~~~~~D~af~~~~~~l 248 (260)
.+.+. .-. |++-++..|
T Consensus 399 ~~v~~--------~~g-al~r~l~~l 415 (419)
T COG1519 399 EFLAQ--------NRG-ALARTLEAL 415 (419)
T ss_pred HHHHH--------hhH-HHHHHHHHh
Confidence 54432 122 666666655
No 104
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.04 E-value=1.5e+02 Score=27.51 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=50.3
Q ss_pred eEEeecCCCCCCchhH----HHHHhhCceeEEeeCce--e---cCCCCCCCCCceEEEEccccHhHHHHHHhcCCChHHH
Q 038978 144 KFCICPGGSLGNFAQI----VDSIHCGCVPVIISDFH--D---LPFNDILDWNKLSMIIREDDVHRLNLILKGIISKGKF 214 (260)
Q Consensus 144 ~FCl~p~G~~~~s~rl----~dal~~GCIPVii~d~~--~---lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~ 214 (260)
.++.||.|.+.....- =.|+.+|..|+.=-+.= . -||. +| . ..+.+-+|..+.....+.+ .++++
T Consensus 208 v~sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~--ld-~--~~~~pv~~~l~~q~Rf~~L-~~~~~ 281 (299)
T PRK11865 208 VLQPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLH--LD-R--RTRKPIEEYLKVQGRFKHL-TEEDI 281 (299)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCccc--cc-c--cCCCCHHHHHhhCcchhcC-CHHHH
Confidence 4567888876543332 24678899998865421 1 2343 34 2 3344555555556666778 89999
Q ss_pred HHHHHHHHhhhccc
Q 038978 215 INSHKNTFKAQKQF 228 (260)
Q Consensus 215 ~~mr~~l~~~~~~~ 228 (260)
+++|+.+.+-|+++
T Consensus 282 ~~~q~~v~~~~~~~ 295 (299)
T PRK11865 282 EILQKYIDEKWKEL 295 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877664
No 105
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=1e+02 Score=30.13 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHhhhccceecCC-----CCCccHHHHHHHHHHH
Q 038978 210 SKGKFINSHKNTFKAQKQFEWNTP-----PIKYGTTFHMVVYELW 249 (260)
Q Consensus 210 ~~~~~~~mr~~l~~~~~~~~y~~~-----~~~~D~af~~~~~~l~ 249 (260)
+.+++.++-+.++.+.+.+...+. |++-|..|+.++.-+.
T Consensus 278 t~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~ 322 (437)
T COG0621 278 TVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVE 322 (437)
T ss_pred CHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHH
Confidence 556666666777778888877764 4554448888887654
No 106
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.79 E-value=93 Score=30.12 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCCCcchhHHHHHHHHhcCCc-ccCCcCCcceEEEe
Q 038978 15 KLKRKFAIEGYFFKKIRESRF-LTTDPAKAHLFFIP 49 (260)
Q Consensus 15 ~~~~~y~~E~~f~~~l~~s~~-~T~dP~eA~lF~vP 49 (260)
|..+||.+|.+.- .|.+..| .|+++++||+.+|=
T Consensus 16 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADiiiiN 50 (448)
T PRK14333 16 CQMNKADSERMAG-ILEDMGYQWAEDELQADLVLYN 50 (448)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEE
Confidence 4568888887655 4555555 88899999999984
No 107
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=21.41 E-value=1.4e+02 Score=22.89 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.2
Q ss_pred CCcccCCcCCcceEEEeccc
Q 038978 33 SRFLTTDPAKAHLFFIPVSC 52 (260)
Q Consensus 33 s~~~T~dP~eA~lF~vP~~~ 52 (260)
..+.|.||.+|.+..||...
T Consensus 4 ~~~~T~d~~~t~iHvv~~~~ 23 (110)
T PF07522_consen 4 SSLFTTDPSETRIHVVPMGQ 23 (110)
T ss_pred hceeecCCCCCeEEEEECCc
Confidence 35789999999999999865
No 108
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.08 E-value=1e+02 Score=29.97 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=25.1
Q ss_pred CCCCcchhHHHHHHHHhcCCc-ccCCcCCcceEEEe
Q 038978 15 KLKRKFAIEGYFFKKIRESRF-LTTDPAKAHLFFIP 49 (260)
Q Consensus 15 ~~~~~y~~E~~f~~~l~~s~~-~T~dP~eA~lF~vP 49 (260)
|..+||.+|.+.-. |....| .|+++++||+.+|=
T Consensus 30 C~~N~~dse~~~~~-l~~~G~~~~~~~~~AD~~iiN 64 (459)
T PRK14338 30 CQMNVSDSERLEAA-LQGVGYSPAERPEDADFIVLN 64 (459)
T ss_pred CCCCHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe
Confidence 45678888876654 454555 78899999999984
No 109
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=20.85 E-value=63 Score=26.70 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=23.6
Q ss_pred EeecCCCCCCchhHHHHHhhCceeEE
Q 038978 146 CICPGGSLGNFAQIVDSIHCGCVPVI 171 (260)
Q Consensus 146 Cl~p~G~~~~s~rl~dal~~GCIPVi 171 (260)
-+.|.+.+.+|.-+-||+.+=.||||
T Consensus 71 vINpga~THTSvAlrDAi~av~iP~v 96 (146)
T COG0757 71 VINPGAYTHTSVALRDAIAAVSIPVV 96 (146)
T ss_pred EEcCccchhhHHHHHHHHHhcCCCEE
Confidence 35688999999999999999999998
No 110
>PF14760 Rnk_N: Rnk N-terminus; PDB: 2PN0_D 3BMB_B.
Probab=20.66 E-value=84 Score=20.18 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=23.1
Q ss_pred EEEEccccHhHHHHHHhcCCCh---HHHHHHHHHHHhh
Q 038978 190 SMIIREDDVHRLNLILKGIISK---GKFINSHKNTFKA 224 (260)
Q Consensus 190 sv~i~~~~~~~l~~~L~~i~~~---~~~~~mr~~l~~~ 224 (260)
.|.|.+.|..+|...+.+. +. +....+...+.++
T Consensus 3 ~I~Is~~D~~RL~~Ll~~~-~~~~~~~~~~L~~EL~RA 39 (42)
T PF14760_consen 3 PIYISELDLERLEALLEAL-SDRDPPVAEALEEELDRA 39 (42)
T ss_dssp --EEEHHHHHHHHHHHCCC-CCTTSCCHHHHHHHHHCS
T ss_pred CEEECHhhHHHHHHHHhCc-cccCCHHHHHHHHHHhhc
Confidence 4678888999999998876 43 3366666666543
No 111
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=20.40 E-value=4.1e+02 Score=23.79 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=54.4
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEeeCceecCCCC-CCCCCceEEEEcc--cc--HhHHHHHHhcCCChHHHHH
Q 038978 142 RSKFCICPGGSLGNFAQIVDSIHCGCVPVIISDFHDLPFND-ILDWNKLSMIIRE--DD--VHRLNLILKGIISKGKFIN 216 (260)
Q Consensus 142 ~S~FCl~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~-~idw~~fsv~i~~--~~--~~~l~~~L~~i~~~~~~~~ 216 (260)
+-||=+...|.+. |.||.--|.+|++++.....+..=|.+ ..+|.-|. -|.. +| +.+..+.+++ .+++.++
T Consensus 145 ~yKyli~~dG~~~-S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~--~~~~a~~ 220 (256)
T smart00672 145 KHKYKINIEGVAW-SVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNE--HDKKAQE 220 (256)
T ss_pred hcceEEecCCccc-hhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHh--CHHHHHH
Confidence 6788888999875 789999999999988877544333333 34666664 3332 23 6666665555 4666677
Q ss_pred HHHHHHhhhcc
Q 038978 217 SHKNTFKAQKQ 227 (260)
Q Consensus 217 mr~~l~~~~~~ 227 (260)
+-++.++..+.
T Consensus 221 Ia~~~~~~~~~ 231 (256)
T smart00672 221 IGKRGSEFIQQ 231 (256)
T ss_pred HHHHHHHHHHH
Confidence 77777664444
Done!