BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038979
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EER|B Chain B, Crystal Structure Of Human Erythropoietin Complexed To Its
Receptor At 1.9 Angstroms
pdb|1EER|C Chain C, Crystal Structure Of Human Erythropoietin Complexed To Its
Receptor At 1.9 Angstroms
Length = 227
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 130 PNPD-KFH--YMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDA--- 183
PNPD KF +++ E+ +R +EEA G + Y ++
Sbjct: 6 PNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPW 65
Query: 184 KDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTG 224
K R+H + V FW LP++++ SF PL+ +T+ +G
Sbjct: 66 KLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASG 106
>pdb|1EBP|A Chain A, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Agonist Peptide [emp1]
pdb|1EBP|B Chain B, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Agonist Peptide [emp1]
Length = 211
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 162 YEEAVLLPNGEVDDKYQYSMDA---KDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQF 218
+EEA G + + Y ++ K R+H + V FW LP++++ SF PL+
Sbjct: 31 WEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR 90
Query: 219 LTSHTG 224
+T+ +G
Sbjct: 91 VTAASG 96
>pdb|1ERN|A Chain A, Native Structure Of The Extracellular Domain Of
Erythropoietin (Epo) Receptor [ebp]
pdb|1ERN|B Chain B, Native Structure Of The Extracellular Domain Of
Erythropoietin (Epo) Receptor [ebp]
Length = 213
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 162 YEEAVLLPNGEVDDKYQYSMDA---KDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQF 218
+EEA G + + Y ++ K R+H + V FW LP++++ SF PL+
Sbjct: 31 WEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR 90
Query: 219 LTSHTG 224
+T+ +G
Sbjct: 91 VTAASG 96
>pdb|1CN4|A Chain A, Erythropoietin Complexed With Extracellular Domains Of
Erythropoietin Receptor
pdb|1CN4|B Chain B, Erythropoietin Complexed With Extracellular Domains Of
Erythropoietin Receptor
Length = 228
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 176 KYQYSMDAKD-----IRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHTG 224
+Y +S +D R+H + V FW LP++++ SF PL+ +T+ +G
Sbjct: 55 QYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASG 108
>pdb|1EBA|A Chain A, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Inactive Peptide [emp33]
Contains 3,5-Dibromotyrosine In Position 4 (Denoted Dby)
pdb|1EBA|B Chain B, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Inactive Peptide [emp33]
Contains 3,5-Dibromotyrosine In Position 4 (Denoted Dby)
Length = 215
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 162 YEEAVLLPNGEVDDKYQYSMDA---KDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQF 218
+EEA G + + Y ++ K R+H + V FW LP++++ SF PL+
Sbjct: 31 WEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR 90
Query: 219 LTSHTG 224
+T+ +G
Sbjct: 91 VTAASG 96
>pdb|1FXW|F Chain F, Crystal Structure Of The Recombinant Alpha1ALPHA2
Catalytic Heterodimer Of Bovine Brain
Platelet-Activating Factor Acetylhydrolase Ib.
pdb|1VYH|A Chain A, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|B Chain B, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|E Chain E, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|F Chain F, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|I Chain I, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|J Chain J, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|M Chain M, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|N Chain N, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|Q Chain Q, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|R Chain R, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 229
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 236 YVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMN 284
+VG++ + E W+++F P + G R +LWR N + N
Sbjct: 44 FVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELEN 92
>pdb|2JIX|B Chain B, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|C Chain C, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|E Chain E, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 225
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 162 YEEAVLLPNGEVDDKYQYSMDA---KDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQF 218
+EEA G + + Y ++ K R+H + V FW LP++++ SF PL+
Sbjct: 40 WEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR 99
Query: 219 LTSHTG 224
+T+ +G
Sbjct: 100 VTAASG 105
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 503 EGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVY 559
EG K+ T + V V A GAE+ R+ SR+A + L + ++ I+R+ + ++
Sbjct: 17 EGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLID--TYCKKQGISRNSVRFLF 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,107,128
Number of Sequences: 62578
Number of extensions: 909782
Number of successful extensions: 1818
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1814
Number of HSP's gapped (non-prelim): 20
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)