BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038979
(606 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE
PE=1 SV=1
Length = 578
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 151/609 (24%), Positives = 251/609 (41%), Gaps = 103/609 (16%)
Query: 1 SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLN-----VQNEEDNRGI 55
+ V+L + ++NG+L+V G + +KG NL++ ++ + NR
Sbjct: 25 ATGAVKLTLDGMNSTLDNGLLKVRFGA-DGSAKEV-WKGGTNLISRLSGAARDPDKNRSF 82
Query: 56 EATNY------------KVIMRTKEQVELSFTRMWQPYTNGTIAPVNIDKRFLMLRGSSG 103
Y +VI +T +QV L+ Y + + ++ +M R SG
Sbjct: 83 YLDYYSGGVNEFVPERLEVIKQTPDQVHLA-------YIDDQNGKLRLEYHLIMTRDVSG 135
Query: 104 FYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYE 163
YSY + P + R V++ + + + S +R PL D +
Sbjct: 136 LYSYVVAANTGSAP-VTVSELRNVYRFDATRLDTLFNS--IRRGTPLLYDELEQLPKVQD 192
Query: 164 EAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVGFWQILPSSESRSFGPLKQFLTSHT 223
E LP+G V KY ++ ++ R W + G W + S E S LKQ L H
Sbjct: 193 ETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGEYYSGDALKQELLVHQ 250
Query: 224 GPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFM 283
I +N +H+ + + ++K++GP+L+Y+N +G+ + L D +R+
Sbjct: 251 DAIILNYLTGSHFGTPDMVAQ----PGFEKLYGPWLLYIN----QGNDRELVADVSRRAE 302
Query: 284 NEVKSWPYKFPASKDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQ 343
+E SWPY++ + R +R ++SGRL + A A V L A ++
Sbjct: 303 HERASWPYRWLDDARYPR--QRATVSGRLRTE----------APHATVVLNS--SAENFD 348
Query: 344 TECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGF--IGDFKYHAAIRITAGSAKQIG 401
+ GY F N G FS+ NV G Y L A+ G IG +R+ G ++G
Sbjct: 349 IQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIG-LLAQQTVRV-EGKKTRLG 406
Query: 402 NLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHR 461
+ + P P W IG DR A EF D+ RQY W +
Sbjct: 407 QIDARQP--APLAWAIGQADRRADEFRF--------------GDKPRQY-RW----QTEV 445
Query: 462 KRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQFKLEGVVKKATYKLRVAVAA-- 519
DL +E+ + RKDWY+AQ + +W I F + Y L +A+AA
Sbjct: 446 PADLTFEIGKSRERKDWYYAQT--------QPGSWHILFNTR--TPEQPYTLNIAIAAAS 495
Query: 520 -------AHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIH-GVYKLFNVDVPGKVL 571
A +L V++N + L ++ + +I R + G Y ++ +P L
Sbjct: 496 NNGMTTPASSPQLAVKLNGQ-----LLTTLKYDNDKSIYRGAMQSGRYHEAHIPLPAGAL 550
Query: 572 RKGNNTIYL 580
++G N I L
Sbjct: 551 QQGGNRITL 559
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglB PE=3 SV=1
Length = 663
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 122/536 (22%), Positives = 191/536 (35%), Gaps = 90/536 (16%)
Query: 125 RMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDD--------- 175
R +F+PN + + ++ S + PL +++ ++A N +D
Sbjct: 156 RTLFRPNTELWTHLTSS--EAQTAPLPSKEAIANEVVVQDATWRFNNTPNDAYYTQFSEY 213
Query: 176 --KYQYSMDAKDIRVHGWI-----STDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISI 228
KY +S +D VHG S +T G W ++ + ++ GPL LT I
Sbjct: 214 FTKYTFSNLWRDNSVHGLYADGTNSNGTTYGAWLVMNTKDTYYGGPLHSDLT--VDGIVY 271
Query: 229 NTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKS 288
N S H+ GE +G + + FGP N GKG + L +
Sbjct: 272 NYLVSNHH-GEG-TPNITNG--FDRTFGPQYYLFN--GGKGSKSSLEDLRSEAETLADPG 325
Query: 289 WPYKFPASK-----DFARSNKRGSISGRL-IVKDRYVSRAGIAAKGAYVGLAKPGRAGSW 342
W F S +A S+KRGS+ G++ + K A + G Y
Sbjct: 326 WNADFYDSIAKHVIGYAPSSKRGSVQGQVKLPKGSTRPIAILTVDGQYFQ--------DN 377
Query: 343 QTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGN 402
E +Q+W + G F + +V G Y L + G GDF H + + AG ++
Sbjct: 378 SVEASSHQYWAEMGQDGTFQLDHVKEGKYRLTVFADGIFGDF-VHDGVEVQAGKVTKVQE 436
Query: 403 LVYKAPRNGPTLWEIGIPDRSAAEFY---IPNPN---------------------PKYIN 438
++ G +W +G PD+S+ EF P+P P +N
Sbjct: 437 -TWEQESAGVEVWRLGTPDKSSGEFLHGDAPDPTHPLHPPQHFIYWGAYDWQQDFPNGVN 495
Query: 439 KLYVKHDRFRQYGL--WERYAELHRKRDLVYEV---WANNYRKDWYFAQNTRKKGNKYEG 493
D + W Y D+ Y+ W N+ D +K+ + +
Sbjct: 496 YTIGSSDPAVDFNTVHWSVYGPTPANPDVEYDTTHDWTINFSLD-------KKQLQQRKT 548
Query: 494 STWQIQFKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPL-FSSGSVGRENAIAR 552
+T IQ L G K A V A A L + + PL G + I R
Sbjct: 549 ATLTIQ--LAG-AKTAAGNTDVYNATEPYANLALESYINEQKEPLTLLVGFNQSSSCIVR 605
Query: 553 HGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPRK--------LDAFTGIMYDYLRFE 600
+ ++ P L GNN + L PR L + YD LR E
Sbjct: 606 SAVSCYQVRSRMEFPADWLNVGNNVLTLHLPRNATDYETAVLPGTVYVQYDALRLE 661
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=rglB PE=3 SV=1
Length = 658
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 154/679 (22%), Positives = 250/679 (36%), Gaps = 122/679 (17%)
Query: 3 AGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKV 62
A +Q+ E ++ + +NN + S +G V+ + G ++LL Q+ G Y V
Sbjct: 19 AALQIAEDDSTITLNNDRFKAVWSKSKGSVVDMFLDG-QDLLGPQSGSTGIGPYLDCYCV 77
Query: 63 I------------MRTKEQVELSFTRMWQPYTNGTIAPV--NIDKRFLMLRGSSGFYSYA 108
M+ E + + T N T P + + + G +G + ++
Sbjct: 78 PSGFYTAGATNPRMQYVEGTDSTGTNYAGVILNDTYTPTGQQFQQYWFLRDGETGLHMFS 137
Query: 109 IYKRLKGWPGF--QLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAV 166
F L R +F+PN + ++ S + PL ++ ++A
Sbjct: 138 RLAYYNETTPFLRNLQEFRTLFRPNTQLWTHLTSS--ELQTAPLPSKNAVSKQVVVQDAT 195
Query: 167 LLPNGEVDD-----------KYQYSMDAKDIRVHGWI-----STDSTVGFWQILPSSESR 210
N DD KY +S +D VHG S ST G W ++ +
Sbjct: 196 WRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNGSTYGAWLVMNTK--- 252
Query: 211 SFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGD 270
GPL LT I N S H+ GE +G + + FGP N GKG
Sbjct: 253 --GPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--FDRTFGPQFYLFN--GGKGS 302
Query: 271 RQMLWRDANRQFMNEVKSWPYKFPAS-----KDFARSNKRGSISGRLIVKDRYVSRAGIA 325
L + SW +F S + S+KRGS+ GR+ +
Sbjct: 303 TSSLQDLRSEAAKLADPSWNAEFYDSIAKHVVGYVPSSKRGSVDGRVKLP---------- 352
Query: 326 AKGAYVGLAKPGRAGSW----QTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFI 381
KGA +A G + YQ+WT + G F I V+ G Y L + G
Sbjct: 353 -KGATNPIAILTVDGQYFQDNSVVPSSYQYWTDIDTSGKFRIDRVVEGKYRLTVYADGIF 411
Query: 382 GDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEF--------YIPNPN 433
GDF + + AG + + A G +W +G PD+S+ EF P
Sbjct: 412 GDF-VRDGVTVKAGKTTTVKE-KWDAESAGKEVWRLGTPDKSSGEFRHGVARDPTHPLHP 469
Query: 434 PKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDW------YFAQNTRKK 487
P+Y+ +Y +G ++ ++L + D Y + +++ D+ F
Sbjct: 470 PEYL--IY--------WGAYDWQSDLPKGID--YRIGSSDPATDFNTVHWSVFGPTPDNP 517
Query: 488 GNKYEGS-TWQIQFKLEGV----VKKATYKLRVAVAAA--------HGAELQVRVNSRS- 533
+Y + W+I F L KKAT +++A A + +E + ++ S
Sbjct: 518 DVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNTDVYNASEPYINLSHESY 577
Query: 534 ---ARRPL-FSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQP-RKLDA 588
+ PL F G + I R + ++ P L+ G NT+ L P D
Sbjct: 578 INDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKVGENTLTLHLPYNATDT 637
Query: 589 FTGIM-------YDYLRFE 600
T I+ YD LR E
Sbjct: 638 ETAILPATVYVQYDALRLE 656
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB
PE=2 SV=2
Length = 660
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 177/459 (38%), Gaps = 65/459 (14%)
Query: 9 EQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRG------IEATNYKV 62
E + +V+ N L+ + +G +I + G ++ L Q+ G + +
Sbjct: 24 ENDTSIVLENDRLRATFDKGRGSIIDLYLDG-QDFLGPQSGSTGIGPYLDCYCTPSGFYT 82
Query: 63 IMRTKEQVEL------SFTRMWQPYTNGTIAPVNID-KRFLMLR-GSSGFYSYAIYKRLK 114
T EL + T+ N T P + +++ LR G +GF+ ++
Sbjct: 83 AGSTNPVTELVQGTDSTGTKYAGIILNDTYTPTGQEFQQYWFLRDGETGFHMFSRLAYYN 142
Query: 115 GWPGF--QLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGE 172
F L R +F+PN D + ++ S + PL D ++ ++A N
Sbjct: 143 ETTPFLRNLQELRTLFRPNTDLWTHLTSS--DLQTAPLPSDEAIAEQIVVQDATWRLNNT 200
Query: 173 VDD-----------KYQYSMDAKDIRVHGW-----ISTDSTVGFWQILPSSESRSFGPLK 216
DD KY +S +D VHG S +T G W ++ + ++ GPL
Sbjct: 201 PDDAYYQQFSEYFTKYTFSNHWRDNDVHGLYADGSTSDGTTYGAWLVMNTKDTYYGGPLH 260
Query: 217 QFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWR 276
LT I N S H+ GE +G + + FGP N ++ R
Sbjct: 261 SDLT--VDGIIYNYIVSNHH-GEG-TPNITNG--FDRTFGPQFYLFNGGGSSSLEEL--R 312
Query: 277 DANRQFMNEVKSWPYKFPASK-----DFARSNKRGSISGRL-IVKDRYVSRAGIAAKGAY 330
D R + SW F S + S++RGS+ G + + K+ A + G Y
Sbjct: 313 DEARSLAS--PSWNADFYDSIAKHVIGYVPSSQRGSVKGTIKLPKNAKSPIAVLTVDGHY 370
Query: 331 V--GLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHA 388
A P +Q+W ++ G FSI V+ G Y L + G GDF
Sbjct: 371 FQDNSAVP----------SSHQYWADIDKNGRFSIDRVVAGKYRLTVYADGIFGDFT-RD 419
Query: 389 AIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEF 427
I + A + I +K G +W +G PD+S+ EF
Sbjct: 420 GIVVKARKSTSIKE-TWKPESAGTEIWRLGTPDKSSGEF 457
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1
Length = 706
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 131/328 (39%), Gaps = 48/328 (14%)
Query: 125 RMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDD--------- 175
R +F+PN + + ++ S + + PL + ++ ++A N D
Sbjct: 156 RTLFRPNTELWTHL--SSSEVQTAPLPSKKAVEEEVVVQDATWTFNNTPTDEYYVQFADY 213
Query: 176 --KYQYSMDAKDIRVHGW-----ISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISI 228
KY +S +D VHG S ST G W ++ + ++ GPL LT I
Sbjct: 214 FTKYTFSNAWRDNSVHGMYADGSTSNGSTFGAWLVMNTKDTYYGGPLHSDLT--VDGIVY 271
Query: 229 NTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKS 288
N S H+ + + + + FGP + N GKG L + S
Sbjct: 272 NYLVSNHHGEGTPNITY----GFDRTFGPQYYHFN--GGKGSTASLQELKSDAETLADPS 325
Query: 289 WPYKFPAS-----KDFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSW- 342
W F S + S++RGS+ G++ + KGA +A G +
Sbjct: 326 WNVDFYDSIAKHVVGYTPSSQRGSVQGKIKLP-----------KGATRPIAVLTVDGQYF 374
Query: 343 ---QTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQ 399
YQ+W ++ G+FS+ +V G Y L + G GDF +++ AG
Sbjct: 375 QDNSVNSSSYQYWAEIDDSGHFSVDHVKEGPYRLTVYADGIFGDF-VRDGVQVKAGKKTT 433
Query: 400 IGNLVYKAPRNGPTLWEIGIPDRSAAEF 427
I ++A G +W +G PD+S+ EF
Sbjct: 434 IQE-TWEAESAGTEIWRLGTPDKSSGEF 460
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rglB PE=3 SV=1
Length = 658
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 155/679 (22%), Positives = 247/679 (36%), Gaps = 122/679 (17%)
Query: 3 AGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKV 62
A +Q+ E + + +NN + S +G V+ + G ++LL Q+ G Y V
Sbjct: 19 AALQIAEDFSSITLNNDRFKAVWSKSKGSVVDMFLDG-QDLLGPQSGSTGIGPYLDCYCV 77
Query: 63 I------------MRTKEQVELSFTRMWQPYTNGTIAPV--NIDKRFLMLRGSSGFYSYA 108
M+ E + + T+ N T P + + + G +G + ++
Sbjct: 78 PSGFYTAGATNPRMQYVEGTDSTGTKYAGVILNDTYTPTGQQFQQYWFLRDGETGLHMFS 137
Query: 109 IYKRLKGWPGF--QLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAV 166
F L R +F+PN + ++ S + PL ++ ++A
Sbjct: 138 RLAYYNETTPFLRNLQEFRTLFRPNTQLWTHLTSS--ELQTAPLPSKNAVSKQVVVQDAT 195
Query: 167 LLPNGEVDD-----------KYQYSMDAKDIRVHGWI-----STDSTVGFWQILPSSESR 210
N DD KY +S +D VHG S ST G W ++ +
Sbjct: 196 WRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNGSTYGAWLVMNTK--- 252
Query: 211 SFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGD 270
GPL LT I N S H+ GE +G + + FGP N GKG
Sbjct: 253 --GPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--FDRTFGPQFYLFN--GGKGS 302
Query: 271 RQMLWRDANRQFMNEVKSWPYKFPAS-----KDFARSNKRGSISGRLIVKDRYVSRAGIA 325
L + SW +F S + S+KRGS+ GR+ +
Sbjct: 303 TSSLQDLRSEAAKLADPSWNAEFYDSIAKHVVGYVPSSKRGSVDGRIKLP---------- 352
Query: 326 AKGAYVGLAKPGRAGSW----QTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFI 381
KGA +A G + YQ+WT + G F I V+ G Y L + G
Sbjct: 353 -KGASNPIAILTVDGQYFQDNSVVPSSYQYWTDIDTSGRFRIDRVVEGKYRLTVYADGIF 411
Query: 382 GDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEF--------YIPNPN 433
GDF + + AG + + A G +W +G PD+S+ EF P
Sbjct: 412 GDF-VRDGVTVRAGKTTTVKE-KWDAESAGKEIWRLGTPDKSSGEFRHGVARDPTHPLHP 469
Query: 434 PKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKD-----WYFAQNTRKKG 488
P+Y+ +Y +G ++ ++ + D Y + +++ D W T
Sbjct: 470 PEYL--IY--------WGAYDWQSDFPKGID--YTIGSSDPATDFNTVHWSVFGPTPDNP 517
Query: 489 NKYEGST--WQIQFKLEGV----VKKATYKLRVAVA-AAHGAELQVRVNS---------- 531
N +T W+I F L KKAT +++A A A G + + +
Sbjct: 518 NVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNTDEYKASEPYINLIHESY 577
Query: 532 -RSARRPL-FSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQP-RKLDA 588
+ PL F G + I R + ++ P L+ G NT+ L P D
Sbjct: 578 INDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKVGENTLTLHLPYNATDT 637
Query: 589 FTGIM-------YDYLRFE 600
T I+ YD LR E
Sbjct: 638 ETAILPATVYVQYDALRLE 656
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3
SV=1
Length = 658
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 155/679 (22%), Positives = 247/679 (36%), Gaps = 122/679 (17%)
Query: 3 AGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNYKV 62
A +Q+ E + + +NN + S +G V+ + G ++LL Q+ G Y V
Sbjct: 19 AALQIAEDFSSITLNNDRFKAVWSKSKGSVVDMFLDG-QDLLGPQSGSTGIGPYLDCYCV 77
Query: 63 I------------MRTKEQVELSFTRMWQPYTNGTIAPV--NIDKRFLMLRGSSGFYSYA 108
M+ E + + T+ N T P + + + G +G + ++
Sbjct: 78 PSGFYTAGATNPRMQYVEGTDSTGTKYAGVILNDTYTPTGQQFQQYWFLRDGETGLHMFS 137
Query: 109 IYKRLKGWPGF--QLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAV 166
F L R +F+PN + ++ S + PL ++ ++A
Sbjct: 138 RLAYYNETTPFLRNLQEFRTLFRPNTQLWTHLTSS--ELQTAPLPSKNAVSKQVVVQDAT 195
Query: 167 LLPNGEVDD-----------KYQYSMDAKDIRVHGWI-----STDSTVGFWQILPSSESR 210
N DD KY +S +D VHG S ST G W ++ +
Sbjct: 196 WRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTNSNGSTYGAWLVMNTK--- 252
Query: 211 SFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGD 270
GPL LT I N S H+ GE +G + + FGP N GKG
Sbjct: 253 --GPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--FDRTFGPQFYLFN--GGKGS 302
Query: 271 RQMLWRDANRQFMNEVKSWPYKFPAS-----KDFARSNKRGSISGRLIVKDRYVSRAGIA 325
L + SW +F S + S+KRGS+ GR+ +
Sbjct: 303 TSSLQDLRSEAAKLADPSWNAEFYDSIAKHVVGYVPSSKRGSVDGRIKLP---------- 352
Query: 326 AKGAYVGLAKPGRAGSW----QTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFI 381
KGA +A G + YQ+WT + G F I V+ G Y L + G
Sbjct: 353 -KGASNPIAILTVDGQYFQDNSVVPSSYQYWTDIDTSGRFRIDRVVEGKYRLTVYADGIF 411
Query: 382 GDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEF--------YIPNPN 433
GDF + + AG + + A G +W +G PD+S+ EF P
Sbjct: 412 GDF-VRDGVTVRAGKTTTVKE-KWDAESAGKEIWRLGTPDKSSGEFRHGVARDPTHPLHP 469
Query: 434 PKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKD-----WYFAQNTRKKG 488
P+Y+ +Y +G ++ ++ + D Y + +++ D W T
Sbjct: 470 PEYL--IY--------WGAYDWQSDFPKGID--YTIGSSDPATDFNTVHWSVFGPTPDNP 517
Query: 489 NKYEGST--WQIQFKLEGV----VKKATYKLRVAVA-AAHGAELQVRVNS---------- 531
N +T W+I F L KKAT +++A A A G + + +
Sbjct: 518 NVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNTDEYKASEPYINLIHESY 577
Query: 532 -RSARRPL-FSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQP-RKLDA 588
+ PL F G + I R + ++ P L+ G NT+ L P D
Sbjct: 578 INDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRMEFPADWLKVGENTLTLHLPYNATDT 637
Query: 589 FTGIM-------YDYLRFE 600
T I+ YD LR E
Sbjct: 638 ETAILPATVYVQYDALRLE 656
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1
Length = 660
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 135/326 (41%), Gaps = 46/326 (14%)
Query: 125 RMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDD--------- 175
R +F+PN D + ++ S + PL D G ++ ++A N +D
Sbjct: 155 RTLFRPNTDLWTHLTSS--ELQTAPLPSDEAVGKQVVVQDATWRFNNTPNDAYYTQFSEY 212
Query: 176 --KYQYSMDAKDIRVHGW-----ISTDSTVGFWQILPSSESRSFGPLKQFLTSHTGPISI 228
KY +S +D VHG S +T G W ++ + ++ GPL LT I
Sbjct: 213 FTKYTFSNAWRDNNVHGLYADGSTSNGTTFGAWLVMNTKDTYYGGPLHSDLT--VDGIVY 270
Query: 229 NTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVKS 288
N S H+ GE +G + + FGP N G G + + + + + S
Sbjct: 271 NYIVSNHH-GEG-TPNITNG--FDRTFGPQFYLFN---GGGSSSLNELRSEAESLAD-PS 322
Query: 289 WPYKFPAS-----KDFARSNKRGSISGRLIVKDRYVSR--AGIAAKGAYVGLAKPGRAGS 341
W +F S + S+KRGS+ G++ + R +R A + G Y
Sbjct: 323 WNVEFYDSIAKHVVGYVPSSKRGSVQGQIKLP-RGATRPIAILTVDGQYFQDNS------ 375
Query: 342 WQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIG 401
+ + YQ+W + G F + +V+ G Y L + G GD+ +++ +I
Sbjct: 376 --VDPRSYQYWVEMDANGKFQLDHVVEGKYRLTVYADGIFGDY-VRDGVQVRGRKTTRI- 431
Query: 402 NLVYKAPRNGPTLWEIGIPDRSAAEF 427
N ++ G +W +G PD+S+ EF
Sbjct: 432 NDSWQPESAGVEVWRLGTPDKSSGEF 457
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1
Length = 695
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 185/511 (36%), Gaps = 83/511 (16%)
Query: 125 RMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDD--------- 175
R +F+P+ D + + S PL + L ++A DD
Sbjct: 157 RTLFRPSTDLWTHFSTSDGNYGPKPLGSNS----GLVVQDATTYIGNVTDDPYVSQYSDY 212
Query: 176 --KYQYSMDAKDIRVHGWISTDS------TVGFWQILPSSESRSFGPLKQFLTSHTGPIS 227
KY + ++ VHG S S T G W + + E+ GPL L I
Sbjct: 213 FTKYTLAESWRNHDVHGLFSDGSSSSDGSTFGAWLVHNTVETYYGGPLHSDLV--VDGIV 270
Query: 228 INTFHSTHYVGENFGMKFKDGEAWKKIFGPFLVYVNSVAGKGDRQMLWRDANRQFMNEVK 287
N S H+ + + + +GP Y N + L DA + E
Sbjct: 271 YNYLVSGHHGAPTPNLT----HGFDRTWGPQFYYFNRGDSETTLADLRADAAKYADPEWN 326
Query: 288 SWPYKFPASK--DFARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQT- 344
+ Y A +F S R + G++ + AK + L++ G+
Sbjct: 327 AEFYDSIADHIPNFTPSTGRTTFKGKVSLPK--------GAKRPIIVLSEDGQDFQLNVF 378
Query: 345 ECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQIGNLV 404
+ Q+W ++ G+FSI V+ G Y + + G F +++ +K +
Sbjct: 379 NTESLQYWAEIDKSGSFSIPRVVEGTYRITIYADEIFGWF-IQDHVKVLKSQSKDY-SFT 436
Query: 405 YKAPRNGPTLWEIGIPDRSAAEF---YIPNPN----PKYINKLYVKHDRFRQY--GLWER 455
+K G +W IGIPD+S+ E+ Y P+ + P+ + K+D + G+
Sbjct: 437 WKEESAGKEIWRIGIPDKSSGEYLHGYAPDTSKPLQPEQHRIYWGKYDYPADFPEGINFH 496
Query: 456 YAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGST--WQIQFKLEGV----VKKA 509
+ +DL Y WA ++ +Q + Y + W + F L A
Sbjct: 497 VGKSDPSQDLNYIHWA------FFPSQGNHLRTEPYYDNVNNWTVTFDLTADQLHNTNTA 550
Query: 510 TYKLRVAVAAAHGAELQ--------------VRVNSRSARR---PLFSSGSVGRENAIAR 552
T+ +++A A + V VN R P + SGS G +A++
Sbjct: 551 TFTVQIAGAKTANGNAKWTPVEGKYSNLPWTVNVNGRYESTWVIPYWRSGSCGVRSAVSC 610
Query: 553 HGIHGVYKLFNVDVPGKVLRKGNNTIYLSQP 583
I + P K L++G N LS P
Sbjct: 611 QNIEQKFAF-----PSKNLQEGKNEFVLSLP 636
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rglC PE=3 SV=1
Length = 1041
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 144/663 (21%), Positives = 236/663 (35%), Gaps = 129/663 (19%)
Query: 1 SAAGVQLHEQNNHVVMNNGILQVSISTPQGFVIGIQYKGNKNLLNVQNEEDNRGIEATNY 60
SAA + + H ++N V+++ G V+ G ++LL + +G Y
Sbjct: 19 SAAALTTTSNSTHYTISNSRFSVAVAKSNGHVVDANLDG-QDLLGPLSGNSGKG----PY 73
Query: 61 KVIMRTKEQVELSFTRMWQP-----YTNGT-------IAPVNID---------KRFLMLR 99
T E W P NGT + + D ++L LR
Sbjct: 74 LDCSCTPEG-------FWTPGAEPALVNGTDSTGTPYVGVIMTDTYETTNQTLSQYLFLR 126
Query: 100 GS-SGFYSYA--IYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRER 156
G +G ++++ Y + L R +F+PN + + + S MPL
Sbjct: 127 GEETGLHAFSRVTYYNESDYFLRGLGELRTLFRPNTNLWTHFSGSEGNYGPMPLSSTE-- 184
Query: 157 GHKLAYEEAVLLPNGEVDD-----------KYQYSMDAKDIRVHGWISTDSTVG------ 199
K+ ++A DD KY + +D VHG S ST G
Sbjct: 185 --KITVQDATTYLGDTTDDPYVSQYSDYFTKYTLTESWRDHDVHGHFSNGSTSGDGNTYG 242
Query: 200 FWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMKFKDGEAWKKIFGPFL 259
W + + E+ GPL L I N S HY N + + + FGP
Sbjct: 243 AWLVHNTRETYYGGPLHADLV--VDGIVYNYIVSGHYGAPNPNLT----HGFDRTFGPQY 296
Query: 260 VYVNSVAGKGDRQMLWRDANRQFMNEVKSWPYKFPASK--DFARSNKRGSISGRLIVKDR 317
+ NS + L DA + E + Y A ++ S R + G++ +
Sbjct: 297 YHFNSGGPGTTLEELRADAAQYASPEWNAEFYDSIAKHIPNYVPSTGRTTFRGKVNLPK- 355
Query: 318 YVSRAGIAAKGAYVGLAKPGRAGSWQTECK-GYQFWTVANEGGNFSIKNVLIGNYNLYAW 376
AK + L++ + K Q+W + G F+I V+ G Y + +
Sbjct: 356 -------GAKKPIIVLSENEQDFQLNVFKKDSLQYWAEIDGSGAFTIPRVVKGTYRVTIY 408
Query: 377 IPGFIGDFKYHAAIRITAGSAKQIGNLVYKAPRNGPTLWEIGIPDRSAAEF---YIPNPN 433
G F +++ +A +K G +W IG+PD+S+ EF Y P+ +
Sbjct: 409 ADEIFGWF-IKDNVKVIGSNAH---TFTWKEETAGKEIWRIGVPDKSSGEFLHGYAPDTS 464
Query: 434 ----PKYINKLYVKHDRFRQY--GLWERYAELHRKRDLVYEVWA------NNYRKDWYFA 481
P+ + K+D + G+ + +DL Y W+ N+ R + Y+
Sbjct: 465 KPLQPEQYRIYWGKYDYPSDFPEGVNYHVGKSDPAKDLNYIHWSFFPSQGNHLRNEPYY- 523
Query: 482 QNTRKKGNKYEGSTWQIQFKLEGV----VKKATYKLRVA--------------VAAAHGA 523
QN W I F L K AT+ +++A A +
Sbjct: 524 QNVNN---------WTITFDLTASQLRNTKTATFTVQLAGTRNANGNSKWNPDPAKYNNL 574
Query: 524 ELQVRVN---SRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYL 580
V VN + P + SGS G + + + +F+ GK LRKG N L
Sbjct: 575 PWTVNVNGIYEDTWEIPYWRSGSCGVRSGVQCQNTEHKF-VFDA---GK-LRKGRNEFVL 629
Query: 581 SQP 583
S P
Sbjct: 630 SLP 632
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,202,018
Number of Sequences: 539616
Number of extensions: 11055714
Number of successful extensions: 19853
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 19822
Number of HSP's gapped (non-prelim): 20
length of query: 606
length of database: 191,569,459
effective HSP length: 123
effective length of query: 483
effective length of database: 125,196,691
effective search space: 60470001753
effective search space used: 60470001753
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)