BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038982
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 148/251 (58%), Gaps = 22/251 (8%)
Query: 34 TWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLS 93
TW K GG + L +DK G+GFQSK YLF F ++MKL+PG++AG VT FYLS
Sbjct: 24 TWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLS 83
Query: 94 SLEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPE 153
S HDE+D EFLGN TG+PY L TN++ G+G RE+ +LWFDP+ +FH YS++WN
Sbjct: 84 SQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMY 143
Query: 154 RIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTA 213
I+F+VD+ +RV +N +LGV FP QPM + +SLWN D WAT+ G K +W+ AP+ A
Sbjct: 144 MIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIA 203
Query: 214 HYRNLVI--------TKYAGNN----------QTLTNLDEKNIRSVQDKFMIYDYCD--- 252
YR+ I K+ Q L + + V+ K+ IY+YC
Sbjct: 204 SYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRS 263
Query: 253 -YGVHPLECEK 262
Y P EC++
Sbjct: 264 RYPSMPPECKR 274
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 21/247 (8%)
Query: 21 VTSKGDFNTDTKITWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIP 80
+TS G F+ WG ++ +G +LT+ +D GSGF+S Y F +KL
Sbjct: 15 ITSLG-FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQS 71
Query: 81 GNAAGLVTTFYLSS---LEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWF 137
G AG++T+FYLS+ G HDE+D+EFLG + G+PYTL TN++ +G G RE HLWF
Sbjct: 72 GYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWF 131
Query: 138 DPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWAT 197
DP+ +H Y+I W P IIF VD+ +R + ++ P +P+W+ S+W+ WAT
Sbjct: 132 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWAT 188
Query: 198 QKGRIKANWTDAPYTAHYRNLVITKYAGNNQTLTN---------LDEKNIRS---VQDKF 245
+ G+ KA++ P+ Y + + + N L ++ + + VQ +
Sbjct: 189 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNY 248
Query: 246 MIYDYCD 252
M+Y+YCD
Sbjct: 249 MVYNYCD 255
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 21/247 (8%)
Query: 21 VTSKGDFNTDTKITWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIP 80
+TS G F+ WG ++ +G +LT+ +D GSGF+S Y F +KL
Sbjct: 38 ITSLG-FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQS 94
Query: 81 GNAAGLVTTFYLSS---LEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWF 137
G AG++T+FYLS+ G HDE+D+EFLG + G+PYTL TN++ +G G RE HLWF
Sbjct: 95 GYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWF 154
Query: 138 DPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWAT 197
DP+ +H Y+I W P IIF VD+ +R + ++ P +P+W+ S+W+ WAT
Sbjct: 155 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWAT 211
Query: 198 QKGRIKANWTDAPYTAHYRNLVITKYAGNNQTLTN---------LDEKNIRS---VQDKF 245
+ G+ KA++ P+ Y + + + N L ++ + + VQ +
Sbjct: 212 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKNY 271
Query: 246 MIYDYCD 252
M+Y+YCD
Sbjct: 272 MVYNYCD 278
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 135/252 (53%), Gaps = 26/252 (10%)
Query: 21 VTSKGDFNTDTKITWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIP 80
+TS G F+ WG ++ +G +LT+ +D GSGF+S Y F +KL
Sbjct: 14 ITSLG-FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQS 70
Query: 81 GNAAGLVTTFYLSS---LEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGH-----RERG 132
G AG++T+FYLS+ G HDE+D+EFLG + G+PYTL TN++ +G G RE
Sbjct: 71 GYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELR 130
Query: 133 FHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG 192
HLWFDP+ +H Y+I W P IIF VD+ +R + ++ P +PMW+ S+W+
Sbjct: 131 IHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDA 187
Query: 193 DQWATQKGRIKANWTDAPYTAHYRNLVITKYAGNNQTLTN---------LDEKNIRS--- 240
WAT+ G+ KA++ P+ Y + + + N L ++ + +
Sbjct: 188 SSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEW 247
Query: 241 VQDKFMIYDYCD 252
VQ +M+Y+YCD
Sbjct: 248 VQKNYMVYNYCD 259
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 26/252 (10%)
Query: 21 VTSKGDFNTDTKITWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIP 80
+TS G F+ WG ++ +G +LT+ +D GSGF+S Y F +KL
Sbjct: 17 ITSLG-FDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIKLQS 73
Query: 81 GNAAGLVTTFYLSS---LEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGH-----RERG 132
G AG++T+FYLS+ G HDE+D+EFLG + G+PYTL TN++ +G G RE
Sbjct: 74 GYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMR 133
Query: 133 FHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG 192
HLWFDP+ +H Y+I W P IIF VD+ +R + ++ P +P+W+ S+W+
Sbjct: 134 IHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDA 190
Query: 193 DQWATQKGRIKANWTDAPYTAHYRNLVITKYAGNNQTLTN---------LDEKNIRS--- 240
WAT+ G+ KA++ P+ Y + + + N L ++ + +
Sbjct: 191 SSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEW 250
Query: 241 VQDKFMIYDYCD 252
VQ +M+Y+YCD
Sbjct: 251 VQKNYMVYNYCD 262
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 28/207 (13%)
Query: 26 DFNTDTKITWGDGRAKITEGGKA-LTL---SIDKKLGSGFQSKKDYLFARFDVEMKLIPG 81
++NT W +T G+ L+L S +K G G QS + Y + ++V MK P
Sbjct: 12 NYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PA 69
Query: 82 NAAGLVTTFYLSS--LEGS-HDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFD 138
G+V+ FY S+ +G+ DE+D+EFLG T + + N Y G G+ E+ +L FD
Sbjct: 70 KNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFD 126
Query: 139 PSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG---DQW 195
+ +H Y+ W P I + VD + ++ A +P + P + SLW G D+W
Sbjct: 127 AANSYHTYAFDWQPNSIKWYVDGQL----KHTATTQIP---QTPGKIYMSLWAGAGVDEW 179
Query: 196 ATQKGRIKANWTDAPYTAHYRNLVITK 222
+ P AHY + TK
Sbjct: 180 LGSYNGV------TPLYAHYNWVRYTK 200
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 33 ITWGDGRAKITEGGK---ALTLSIDKKLGSG-FQSKKDYLFARFDVEMKLIPGNAAGLVT 88
TW T GK LT S K ++S Y + ++V MK P G+V+
Sbjct: 32 CTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 89
Query: 89 TF--YLSSLEGSH-DEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQ 145
+F Y G+ DE+D+EFLG T + + N Y G G E+ L FD S FH
Sbjct: 90 SFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHT 146
Query: 146 YSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG---DQW 195
Y+ W P I + VD V H AN+ P ++ +LWNG D W
Sbjct: 147 YAFDWQPGYIKWYVD--GVLKHTATANI-----PSTPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 33 ITWGDGRAKITEGGK---ALTLSIDKKLGSG-FQSKKDYLFARFDVEMKLIPGNAAGLVT 88
TW T GK LT S K ++S Y + ++V MK P G+V+
Sbjct: 30 CTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 87
Query: 89 TF--YLSSLEGSH-DEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQ 145
+F Y G+ DE+D+EFLG T + + N Y G G E+ L FD S FH
Sbjct: 88 SFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHT 144
Query: 146 YSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG---DQW 195
Y+ W P I + VD V H AN+ P ++ +LWNG D W
Sbjct: 145 YAFDWQPGYIKWYVD--GVLKHTATANI-----PSTPGKIMMNLWNGTGVDDW 190
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 61 FQSKKDYLFARFDVEMKLIPGNAAGLVTTF--YLSSLEGSH-DEVDMEFLGNVTGEPYTL 117
++S Y + ++V MK P G+V++F Y G+ DE+D+EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 118 HTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPF 177
N Y G G E+ L FD S FH Y+ W P I + VD V H AN+
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANI---- 114
Query: 178 PAKQPMWLIASLWNG---DQW 195
P ++ +LWNG D W
Sbjct: 115 -PSTPGKIMMNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 61 FQSKKDYLFARFDVEMKLIPGNAAGLVTTF--YLSSLEGSH-DEVDMEFLGNVTGEPYTL 117
++S Y + ++V MK P G+V++F Y G+ DE+D+EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 118 HTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPF 177
N Y G G E+ L FD S FH Y+ W P I + VD V H AN+
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANI---- 114
Query: 178 PAKQPMWLIASLWNG---DQW 195
P ++ +LWNG D W
Sbjct: 115 -PSTPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 61 FQSKKDYLFARFDVEMKLIPGNAAGLVTTF--YLSSLEGSH-DEVDMEFLGNVTGEPYTL 117
++S Y + ++V MK P G+V++F Y G+ DE+D+EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 118 HTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPF 177
N Y G G E+ L FD S FH Y+ W P I + VD V H AN+
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANI---- 114
Query: 178 PAKQPMWLIASLWNG---DQW 195
P ++ +LWNG D W
Sbjct: 115 -PSTPGKIMMNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 62 QSKKDYLFARFDVEMKLIPGNAAGLVTTF--YLSSLEGS-HDEVDMEFLGNVTGEPYTLH 118
+S + Y + ++V MK P G+V++F Y +G+ DE+D+EFLG T + +
Sbjct: 65 RSVQTYGYGLYEVNMK--PAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQ 119
Query: 119 TNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFP 178
N Y G G+ E+ +L FD + +H Y+ W P I + VD + ++ A +P
Sbjct: 120 FNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQL----KHTATTQIP-- 173
Query: 179 AKQPMWLIASLWNG---DQWATQKGRIKANWTDAPYTAHYRNLVITK 222
+ P ++ +LWNG D+W + P AHY + TK
Sbjct: 174 -QTPGKIMMNLWNGAGVDEWLGSYNGV------TPLYAHYNWVRYTK 213
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 33 ITWGDGRAKITEGGK---ALTLSIDKKLGSG-FQSKKDYLFARFDVEMKLIPGNAAGLVT 88
TW T GK LT S K ++S Y + ++V MK P G+V+
Sbjct: 32 CTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 89
Query: 89 TF--YLSSLEGSH-DEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQ 145
+F Y G+ D++D++FLG T + + N Y G G E+ L FD S FH
Sbjct: 90 SFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHT 146
Query: 146 YSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG---DQW 195
Y+ W P I + VD V H AN+ P ++ +LWNG D W
Sbjct: 147 YAFDWQPGYIKWYVD--GVLKHTATANI-----PSTPGKIMMNLWNGTGVDDW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 28/200 (14%)
Query: 33 ITWGDGRAKITEGGK---ALTLSIDKKLGSG-FQSKKDYLFARFDVEMKLIPGNAAGLVT 88
TW +T G+ ALT K G +S + Y + ++V MK P G+V+
Sbjct: 56 CTWRANNVSMTSLGEMRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGIVS 113
Query: 89 TF--YLSSLEGSH-DEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQ 145
+F Y +G+ DE+D+EFLG T + + N Y G G+ E+ L FD + +H
Sbjct: 114 SFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANAYHT 170
Query: 146 YSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG---DQWATQKGRI 202
Y+ W P I + VD + N +P P ++ +LWNG D+W +
Sbjct: 171 YAFDWQPNSIKWYVDGQLKHTATNQ----IP---TTPGKIMMNLWNGTGVDEWLGSYNGV 223
Query: 203 KANWTDAPYTAHYRNLVITK 222
P AHY + TK
Sbjct: 224 N------PLYAHYDWVRYTK 237
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 58 GSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTF--YLSSLEGS-HDEVDMEFLGNVTGEP 114
G+ ++++ + + + V MK P G+V++F Y + G+ DE+D+EFLG T +
Sbjct: 81 GAEYRTRDKFGYGLYQVRMK--PAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK- 137
Query: 115 YTLHTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAV-RVHENL 170
+ N Y G+ E + L FD S FH Y+ W P I ++VD + V R ++++
Sbjct: 138 --VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYRAYDDI 192
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 85 GLVTTF--YLSSLEGSH-DEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSA 141
G+V++F Y G+ DE+D+EFLG T + + N Y G G E+ L FD S
Sbjct: 3 GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASK 59
Query: 142 KFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG---DQW 195
FH Y+ W P I + VD V H AN+ P ++ +LWNG D W
Sbjct: 60 GFHTYAFDWQPGYIKWYVD--GVLKHTATANI-----PSTPGKIMMNLWNGTGVDDW 109
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 51 LSIDKKLGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHD-------EVD 103
+S+ G+ + ++Y + +F+ MK+ A+G V++ +L GS EVD
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQ-NGSEIADGRPWVEVD 58
Query: 104 MEFLGNVTGEPYTLHTNIYAQGEGHRERGF-HLWFDPSA--KFHQYSIVWNPERIIFMVD 160
+E LG P + +NI G ++ H P+A FH Y + W P + + VD
Sbjct: 59 IEVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVD 115
Query: 161 NKAVRVHE 168
+ VR E
Sbjct: 116 GQEVRKTE 123
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 62 QSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSH----DEVDMEFLGNVTGEPYTL 117
Q+K + R + +++ G G+ F++ + + D +++ + N+ EP+ +
Sbjct: 80 QNKVQPQYGRVEASIQIPRGQ--GIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLV 137
Query: 118 HTNIYAQGEGHRERGFHLWFDPSA-----KFHQYSIVWNPERIIFMVDNKAVRVHENLAN 172
H +++ G E + P FH +++ W P I + VD A + + +
Sbjct: 138 HGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGVAYQTYTSADT 197
Query: 173 LGVPFPAKQPMWLIASLWNGDQW 195
G P+ QP ++I ++ G W
Sbjct: 198 RGNPWVFDQPFFMILNVAVGGDW 220
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 58 GSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHD-------EVDMEFLGNV 110
G+ + ++ + +F+ MK+ A+G V++ +L GS EVD+E LG
Sbjct: 7 GAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQ-NGSEIADGRPWVEVDIEVLGK- 62
Query: 111 TGEPYTLHTNIYAQGEGHRERGF-HLWFDPSA--KFHQYSIVWNPERIIFMVDNKAVRVH 167
P + +NI G ++ H P+A FH Y + W P + + VD + VR
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 168 E 168
E
Sbjct: 121 E 121
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 101 EVD-MEFLGNVTGEPYTLHTNIYAQGEGHRE---RGFHL---WFDPSAKFHQYSIVWNPE 153
E+D MEFLG+ EP T+H ++ G + R + L D + FH + IVW P+
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 154 RIIFMVDNKAVR--VHENLANLGVPFPAKQPMWLIASLWNGDQW 195
+I + VD E + +G + +P ++I +L G W
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNLAVGGYW 237
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 58 GSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHD-------EVDMEFLGNV 110
G+ + ++ + +F+ MK+ A+G V++ +L GS EVD+E LG
Sbjct: 6 GAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQ-NGSEIADGRPWVEVDIEVLGK- 61
Query: 111 TGEPYTLHTNIYAQGEGHRERGF-HLWFDPSA--KFHQYSIVWNPERIIFMVDNKAVRVH 167
P + +NI G ++ H P+A FH Y + W P + + VD + VR
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 119
Query: 168 E 168
E
Sbjct: 120 E 120
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 19/155 (12%)
Query: 62 QSKKDYLFARFDVEMKLIPGNAAGLVTTF------YLSSLEGSHDEVDMEFLGNVTGEPY 115
+ K + + RF++ +L G Y S+ + E+D+ +V P
Sbjct: 78 RGKASWTYGRFEIRARLPSGRGTWPAIWMLPDRQTYGSAYWPDNGEIDIA--EHVGFNPD 135
Query: 116 TLHTNIYAQGEGH---RERGFHLWFDPSAK--FHQYSIVWNPERIIFMVDNKAVR--VHE 168
+H ++ + H +RG + P+A+ FH Y+I W PE I + VD+ +E
Sbjct: 136 VVHGTVHTKAYNHLLGTQRGGSI-RVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNE 194
Query: 169 NLANLGVP---FPAKQPMWLIASLWNGDQWATQKG 200
L N +P QP LI ++ G W Q+G
Sbjct: 195 RLTNPEADWRHWPFDQPFHLIMNIAVGGTWGGQQG 229
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 127 GHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLI 186
G E+ L FD S FH Y+ W P I + VD V H AN+ P ++
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANI-----PSTPGKIM 54
Query: 187 ASLWNG---DQW 195
+LWNG D W
Sbjct: 55 MNLWNGTGVDDW 66
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 33 ITWGDGRAKITEGGK---ALTLSIDKKLGSG-FQSKKDYLFARFDVEMKLIPGNAAGLVT 88
TW T GK LT S K ++S Y + ++V MK P G+V+
Sbjct: 120 CTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 177
Query: 89 TF--YLSSLEGSH-DEVDMEFLGNVT 111
+F Y G+ DE+D+EFLG T
Sbjct: 178 SFFTYTGPAHGTQWDEIDIEFLGKDT 203
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 58 GSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHD-------EVDMEFLGNV 110
G+ + ++ + +F+ MK+ A+G V++ L GS EVD+E LG
Sbjct: 7 GAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQ-NGSEIADGRPWVEVDIEVLGK- 62
Query: 111 TGEPYTLHTNIYAQGEGHRERGF-HLWFDPSA--KFHQYSIVWNPERIIFMVDNKAVRVH 167
P + +NI G ++ H P+A FH Y + W P + + VD + VR
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 168 E 168
E
Sbjct: 121 E 121
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 101 EVD-MEFLGNVTGEPY-TLHTNIYAQGEG-----HRERGFHLWFDPSAKFHQYSIVWNPE 153
E+D ME LG+ T Y T H Y+ G H G D S FH +SI W+ +
Sbjct: 132 EIDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVP---DFSEDFHIFSIEWDED 188
Query: 154 RIIFMVDNKAVRV--HENLANLGVPFPAKQPMWLIASLWNGDQW 195
+ + VD + V + LA LG+ + P +LI ++ G W
Sbjct: 189 EVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGYW 232
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 101 EVD-MEFLGNVTGEPY-TLHTNIYAQGEG-----HRERGFHLWFDPSAKFHQYSIVWNPE 153
E+D ME LG+ T Y T H Y+ G H G D S FH +SI W+ +
Sbjct: 140 EIDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVP---DFSEDFHIFSIEWDED 196
Query: 154 RIIFMVDNKAVRV--HENLANLGVPFPAKQPMWLIASLWNGDQW 195
+ + VD + V + LA LG+ + P +LI ++ G W
Sbjct: 197 EVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGYW 240
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 101 EVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGF-HLWFDPSA--KFHQYSIVWNPERIIF 157
EVD+E LG P + +NI G ++ H P+A FH Y + W P + +
Sbjct: 56 EVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRW 112
Query: 158 MVDNKAVRVHE 168
VD + VR E
Sbjct: 113 TVDGQEVRKTE 123
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 101 EVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGF-HLWFDPSA--KFHQYSIVWNPERIIF 157
EVD+E LG P + +NI G ++ H P+A FH Y + W P + +
Sbjct: 53 EVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRW 109
Query: 158 MVDNKAVRVHE 168
VD + VR E
Sbjct: 110 TVDGQEVRKTE 120
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 62 QSKKDYLFARFDVEMKLIPGNAAGLVTTFYL--SSLEG----SHDEVDMEFLGNVTGEPY 115
Q K + R + +++ G G+ F++ S G S E+D+ + NV EP+
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPH 131
Query: 116 TLHTNIYAQGEGHRERGFHLWFDPSA-----KFHQYSIVWNPERIIFMVDNKAVRVHENL 170
+H ++ G ++ P FH +++ W P I + VD +
Sbjct: 132 RVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDGQQFHRVTRA 191
Query: 171 ANLGVPFPAKQPMWLIASLWNGDQW 195
+ + QP +LI ++ G QW
Sbjct: 192 SVGANAWVFDQPFFLILNVAVGGQW 216
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 132 GFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENL 170
G+HL FDP FH Y + ++I + VD + V +NL
Sbjct: 181 GYHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNL 219
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 138 DPSAKFHQYSIVWNPERIIFMVDNKAVRV 166
DP++++H Y++ W P + F DN+ +V
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKV 237
>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 155 IIFMVDNKAVRVHENLANLGVPFPAKQPMWL-IASLWNGDQWATQK 199
II+ V + V ENL LGVP Q W I+++ D+ QK
Sbjct: 172 IIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQK 217
>pdb|1DQN|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQN|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
pdb|1DQP|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
Length = 230
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 181 QPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVITKYAGNNQTLTNLDEKNIRS 240
+P+ L+A L +A+ + + T PYT H+ + ++ Y G Q DE++++
Sbjct: 61 EPVTLVALLTGAYLYASL---LTVHLT-FPYTLHF--VKVSSYKGTRQESVVFDEEDLKQ 114
Query: 241 VQDK---FMIYDYCDYGVHPLECEKQNSQA 267
+++K +I +Y D G ++Q A
Sbjct: 115 LKEKREVVLIDEYVDSGHTIFSIQEQIKHA 144
>pdb|2AOQ|A Chain A, Crystal Structure Of Muth-Unmethylated Dna Complex
pdb|2AOR|A Chain A, Crystal Structure Of Muth-Hemimethylated Dna Complex
pdb|2AOR|B Chain B, Crystal Structure Of Muth-Hemimethylated Dna Complex
Length = 223
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 51 LSIDKKLGSGFQSKKDYLFARFDVEMKLIPGNAAG--LVTTF 90
+ +++ LG+ SK + F+ VE+K +P NA G L TTF
Sbjct: 45 MLLERALGATAGSKAEQDFSHLGVELKTLPINAEGYPLETTF 86
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 28/177 (15%)
Query: 28 NTDTKITWGDGRAKITE-------GGKALTL-------SIDKKLGSGFQSKKDYLFARFD 73
+TD +I DG+ ++ E G K L L +I KL F L +++
Sbjct: 49 DTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYE 108
Query: 74 VEMK---LIPGNAAGLVTTFYLSSLEGSHDEVD--MEFLGNVTGEPYTLH---------T 119
V + G L++ +L+ HD+ + F + GE Y LH T
Sbjct: 109 VNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKT 168
Query: 120 NIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVP 176
+Y + R + K H Y+++ NP+ ++ ++++ NL N P
Sbjct: 169 GVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTP 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,757,831
Number of Sequences: 62578
Number of extensions: 380228
Number of successful extensions: 843
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 36
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)