Query 038982
Match_columns 282
No_of_seqs 279 out of 1714
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3.2E-77 7E-82 548.2 32.5 240 24-263 24-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 2.8E-76 6.1E-81 538.1 31.0 237 24-260 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 2.6E-43 5.6E-48 311.4 25.1 178 31-222 10-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.6E-37 5.6E-42 274.1 25.1 174 31-221 25-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 4.6E-35 9.9E-40 252.4 18.0 168 28-201 2-178 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 2.1E-32 4.5E-37 240.1 24.1 171 32-220 24-209 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 9.5E-32 2.1E-36 245.2 23.1 177 36-220 56-256 (258)
8 cd08023 GH16_laminarinase_like 100.0 1.5E-31 3.2E-36 239.8 22.8 177 33-220 33-234 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 1.2E-28 2.7E-33 226.1 22.0 170 37-220 43-267 (269)
10 cd02182 GH16_Strep_laminarinas 100.0 3.7E-28 8.1E-33 221.7 20.3 181 34-221 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 100.0 3.9E-28 8.4E-33 225.4 20.1 182 33-221 36-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.9 1.3E-26 2.8E-31 218.5 19.5 135 60-196 103-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 3.8E-26 8.3E-31 214.6 18.3 133 59-193 99-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 3.7E-24 8.1E-29 203.0 19.6 158 30-196 71-242 (355)
15 PF03935 SKN1: Beta-glucan syn 99.6 8.5E-14 1.8E-18 136.4 15.2 175 38-221 161-452 (504)
16 cd02181 GH16_fungal_Lam16A_glu 99.5 1.1E-13 2.4E-18 127.9 13.9 167 24-196 10-251 (293)
17 PF06955 XET_C: Xyloglucan end 99.4 1.1E-13 2.5E-18 96.4 2.5 36 225-260 8-51 (51)
18 PF13385 Laminin_G_3: Concanav 96.1 0.19 4.1E-06 40.1 12.7 75 139-236 83-157 (157)
19 PF09264 Sial-lect-inser: Vibr 93.9 0.36 7.8E-06 42.3 8.3 106 50-168 10-121 (198)
20 cd00152 PTX Pentraxins are pla 92.9 6 0.00013 34.6 17.4 85 139-239 88-174 (201)
21 smart00159 PTX Pentraxin / C-r 92.5 7 0.00015 34.3 16.5 85 139-239 88-174 (206)
22 smart00560 LamGL LamG-like jel 91.7 6.1 0.00013 32.0 14.1 67 139-222 59-127 (133)
23 smart00210 TSPN Thrombospondin 88.8 9.4 0.0002 32.9 11.7 88 71-168 55-144 (184)
24 PF02973 Sialidase: Sialidase, 86.1 23 0.00051 31.2 14.6 144 65-238 30-185 (190)
25 cd00110 LamG Laminin G domain; 85.6 17 0.00036 29.1 15.9 131 67-220 19-150 (151)
26 PF10287 DUF2401: Putative TOS 85.3 4.2 9.1E-05 37.0 7.7 77 71-153 102-207 (235)
27 PF06439 DUF1080: Domain of Un 84.0 2.4 5.3E-05 35.7 5.5 32 139-170 125-156 (185)
28 PF02210 Laminin_G_2: Laminin 78.4 27 0.00059 26.7 9.4 76 139-222 52-127 (128)
29 PF00354 Pentaxin: Pentaxin fa 76.3 24 0.00052 30.9 9.3 86 139-240 82-169 (195)
30 PF14099 Polysacc_lyase: Polys 75.8 48 0.001 28.9 11.2 56 133-192 144-204 (224)
31 PF09224 DUF1961: Domain of un 75.3 11 0.00025 33.8 6.8 156 36-220 24-218 (218)
32 smart00282 LamG Laminin G doma 67.3 24 0.00053 27.9 6.7 27 140-166 61-87 (135)
33 PF07172 GRP: Glycine rich pro 42.7 18 0.00039 28.3 1.9 9 1-9 1-9 (95)
34 KOG1834 Calsyntenin [Extracell 41.7 29 0.00064 36.2 3.7 53 139-196 440-492 (952)
35 PF04202 Mfp-3: Foot protein 3 37.3 36 0.00078 25.0 2.6 38 1-38 1-39 (71)
36 cd01951 lectin_L-type legume l 34.1 3.2E+02 0.0069 23.8 14.5 118 46-163 28-178 (223)
37 cd06526 metazoan_ACD Alpha-cry 29.5 1.3E+02 0.0029 22.0 4.8 52 35-89 18-69 (83)
38 COG3354 FlaG Putative archaeal 27.3 91 0.002 26.5 3.8 53 7-59 9-81 (154)
39 cd06482 ACD_HspB10 Alpha cryst 27.2 1.2E+02 0.0026 23.1 4.2 46 36-81 20-65 (87)
40 PF06832 BiPBP_C: Penicillin-B 24.6 88 0.0019 23.3 3.1 34 154-189 44-77 (89)
41 PF11948 DUF3465: Protein of u 24.4 1.1E+02 0.0024 25.4 3.8 24 37-60 34-57 (131)
42 PF07691 PA14: PA14 domain; I 23.4 1.2E+02 0.0025 24.1 3.8 29 139-168 57-85 (145)
43 KOG4352 Fas-mediated apoptosis 22.5 1.7E+02 0.0036 25.1 4.5 37 130-167 92-128 (187)
44 cd06470 ACD_IbpA-B_like Alpha- 21.2 1.7E+02 0.0037 21.9 4.1 46 36-81 23-71 (90)
45 PF00722 Glyco_hydro_16: Glyco 21.0 78 0.0017 26.5 2.4 32 181-219 154-185 (185)
46 PRK01904 hypothetical protein; 21.0 1.9E+02 0.0041 25.8 4.9 15 229-243 202-217 (219)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.2e-77 Score=548.23 Aligned_cols=240 Identities=46% Similarity=0.898 Sum_probs=226.4
Q ss_pred ccccccCCeeeecCCCeEEeeCCcEEEEEEecCCCceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeCCCCCCeee
Q 038982 24 KGDFNTDTKITWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHDEVD 103 (282)
Q Consensus 24 ~~~f~~~f~~~w~~~nv~~~~~g~~l~L~ld~~sGsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~p~~~EID 103 (282)
+.+|.++|.++|+.+|+++.++|+.|+|+||+.+|++|+||+.|+||+||+|||+|+|+++|+||||||++.++.+||||
T Consensus 24 ~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEID 103 (291)
T PLN03161 24 EADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEID 103 (291)
T ss_pred cccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeEE
Confidence 56799999999999999998888889999999999999999999999999999999988899999999999777899999
Q ss_pred EeeeCCCCCCCcEEEeeEeeCCCCCceeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCCCCe
Q 038982 104 MEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPM 183 (282)
Q Consensus 104 ~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm 183 (282)
|||||+.+|+++++|||+|.+|.++++++++++||++++||+|+|+|+|++|+|||||++||++++.+..|.+||+++||
T Consensus 104 iEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM 183 (291)
T PLN03161 104 FEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGM 183 (291)
T ss_pred EEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999877778899998899
Q ss_pred EEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEEeeee-----------------cCC----cCCCHHHHHHHHHHh
Q 038982 184 WLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVITKYA-----------------GNN----QTLTNLDEKNIRSVQ 242 (282)
Q Consensus 184 ~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~-----------------w~~----~~l~~~~~~~~~~~~ 242 (282)
+|++|||+|++|||+||++||||+++||+|.|++|++++|. |++ ++|+++|+++|+|||
T Consensus 184 ~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 263 (291)
T PLN03161 184 RVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKVR 263 (291)
T ss_pred EEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999993 222 369999999999999
Q ss_pred ccCeEEccCC----CCCC-CCCcccC
Q 038982 243 DKFMIYDYCD----YGVH-PLECEKQ 263 (282)
Q Consensus 243 ~~~~~y~yc~----~~~~-~~ec~~~ 263 (282)
+||||||||. ||++ ||||.++
T Consensus 264 ~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 264 DNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred hCcEEEeccCCCCcCCCCcCcccCCC
Confidence 9999999999 9984 9999764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=2.8e-76 Score=538.09 Aligned_cols=237 Identities=48% Similarity=0.967 Sum_probs=225.8
Q ss_pred ccccccCCeeeecCCCeEEeeCCcEEEEEEecCCCceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeCC-CCCCee
Q 038982 24 KGDFNTDTKITWGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE-GSHDEV 102 (282)
Q Consensus 24 ~~~f~~~f~~~w~~~nv~~~~~g~~l~L~ld~~sGsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-p~~~EI 102 (282)
+++|.++|.++|+++||++.++|+.|+|+||+.+|++|+||..|+||+||||||||+++++|+||||||++++ |.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4679999999999999999988889999999999999999999999999999999998889999999999987 889999
Q ss_pred eEeeeCCCCCCCcEEEeeEeeCCCCCceeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCCCC
Q 038982 103 DMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQP 182 (282)
Q Consensus 103 D~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 182 (282)
|||+||+.+|+++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777889999899
Q ss_pred eEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEEeee---------------ecCC----cCCCHHHHHHHHHHhc
Q 038982 183 MWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVITKY---------------AGNN----QTLTNLDEKNIRSVQD 243 (282)
Q Consensus 183 m~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c---------------~w~~----~~l~~~~~~~~~~~~~ 243 (282)
|+|++|||+||+|||+||++++||+++||+|.|++|+|++| .|+. ++|+++|+++|+|||+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 242 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRR 242 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 1433 4799999999999999
Q ss_pred cCeEEccCC----CCCCCCCc
Q 038982 244 KFMIYDYCD----YGVHPLEC 260 (282)
Q Consensus 244 ~~~~y~yc~----~~~~~~ec 260 (282)
||||||||. ||..||||
T Consensus 243 ~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 243 NYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred CCEEEecCCCCCcCCCCcCCC
Confidence 999999999 99779999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.6e-43 Score=311.35 Aligned_cols=178 Identities=28% Similarity=0.552 Sum_probs=154.7
Q ss_pred CeeeecCCCeEEeeCCcEEEEEEecC-CCceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeEeeeCC
Q 038982 31 TKITWGDGRAKITEGGKALTLSIDKK-LGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHDEVDMEFLGN 109 (282)
Q Consensus 31 f~~~w~~~nv~~~~~g~~l~L~ld~~-sGsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~p~~~EID~E~lG~ 109 (282)
++.+...++|++.++ .|.|+|++. ++++|+|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 10 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~ 83 (203)
T cd02183 10 YDWTVTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG 83 (203)
T ss_pred CccEecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC
Confidence 334556788888643 599999987 6889999999999999999999998 899999999987 579999999996
Q ss_pred CCCCCcEEEeeEeeCCCC---CceeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccC-CCCCCCCCCCeEE
Q 038982 110 VTGEPYTLHTNIYAQGEG---HRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLAN-LGVPFPAKQPMWL 185 (282)
Q Consensus 110 ~~G~p~~~~TNv~~~g~g---~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~~Pm~l 185 (282)
++..+|+|+|.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+..||. +||+|
T Consensus 84 ---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l 159 (203)
T cd02183 84 ---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRL 159 (203)
T ss_pred ---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEE
Confidence 578899999987654 345677788998899999999999999999999999999987542 3577996 99999
Q ss_pred EEEeecCCC---------ccCCCCccccCCCCCCeEEEEcEEEEee
Q 038982 186 IASLWNGDQ---------WATQKGRIKANWTDAPYTAHYRNLVITK 222 (282)
Q Consensus 186 ~~nlW~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~ 222 (282)
++|+|+||+ || || ++||+.+||+|.|++|+|.+
T Consensus 160 ~ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 160 QIGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEe
Confidence 999999985 88 77 69999999999999999965
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=2.6e-37 Score=274.06 Aligned_cols=174 Identities=30% Similarity=0.621 Sum_probs=147.6
Q ss_pred CeeeecCCCeEEeeCCcEEEEEEecCC-------CceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeC---CCCCC
Q 038982 31 TKITWGDGRAKITEGGKALTLSIDKKL-------GSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSL---EGSHD 100 (282)
Q Consensus 31 f~~~w~~~nv~~~~~g~~l~L~ld~~s-------Gsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~---~p~~~ 100 (282)
..++|.++||++.+ | .|+|++.+.. +++|.|+.+|+||+||||||++.+ +|+|+||||++. +..++
T Consensus 25 ~~~~~~~~nv~v~~-g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~ 100 (212)
T cd02175 25 FNCTWSADNVEFSD-G-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHD 100 (212)
T ss_pred EeeeEccccEEEEC-C-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCC
Confidence 34688899999974 4 5889886543 577999999999999999999987 899999999974 24579
Q ss_pred eeeEeeeCCCCCCCcEEEeeEeeCCCCCceeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCC
Q 038982 101 EVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAK 180 (282)
Q Consensus 101 EID~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~ 180 (282)
|||||++|+ ++..+++|+|.++.+.....+.+.+++.++||+|+|+|+|++|+|||||++++++...+ ..+|.
T Consensus 101 EIDiE~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~- 173 (212)
T cd02175 101 EIDIEFLGK---DTTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD- 173 (212)
T ss_pred EEEEEEccC---CCCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-
Confidence 999999997 44678899988877666666778889999999999999999999999999999998643 35787
Q ss_pred CCeEEEEEeecCC---CccCCCCccccCCCCCCeEEEEcEEEEe
Q 038982 181 QPMWLIASLWNGD---QWATQKGRIKANWTDAPYTAHYRNLVIT 221 (282)
Q Consensus 181 ~Pm~l~~nlW~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (282)
+||+|++|+|.++ +|+ | ++|. ..|++|+|++|||.
T Consensus 174 ~p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 174 TPGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CCcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 9999999999985 597 4 5676 88999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=4.6e-35 Score=252.45 Aligned_cols=168 Identities=36% Similarity=0.685 Sum_probs=144.7
Q ss_pred ccCCeeeecCCCeEEeeCCcEEEEEEec-----CCCceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeC--CCCCC
Q 038982 28 NTDTKITWGDGRAKITEGGKALTLSIDK-----KLGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSL--EGSHD 100 (282)
Q Consensus 28 ~~~f~~~w~~~nv~~~~~g~~l~L~ld~-----~sGsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~--~p~~~ 100 (282)
.+.+.++|.++||++.++ +.|.|++++ .++++|.|+..++||+||+|||++.+ +|+|+||||.+. .+.++
T Consensus 2 ~~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~ 78 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGG 78 (185)
T ss_dssp CCTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTE
T ss_pred CCceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchh
Confidence 367899999999999754 579999987 45678999999999999999998876 899999999753 27889
Q ss_pred eeeEeeeCCCCCCCcEEEeeEeeCCCCCc--eeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCC
Q 038982 101 EVDMEFLGNVTGEPYTLHTNIYAQGEGHR--ERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFP 178 (282)
Q Consensus 101 EID~E~lG~~~G~p~~~~TNv~~~g~g~~--e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 178 (282)
|||||++|+. +..+++|+|..+.+.. +.++.+.+++..+||+|+|+|+|++|+|||||++++++......+..+|
T Consensus 79 EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGND---PTQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTS---TTEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccc---ccceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 9999999984 4569999999888765 5677778899999999999999999999999999999998765444688
Q ss_pred CCCCeEEEEEeecCCCccCCCCc
Q 038982 179 AKQPMWLIASLWNGDQWATQKGR 201 (282)
Q Consensus 179 ~~~Pm~l~~nlW~gg~Wat~GG~ 201 (282)
...||+|.+++|.+++|++..|.
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~~ 178 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAGE 178 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSECE
T ss_pred ccceeEEEEccccCCCCCCCCCE
Confidence 77899999999999999866553
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.1e-32 Score=240.06 Aligned_cols=171 Identities=32% Similarity=0.550 Sum_probs=143.0
Q ss_pred eeeecCCCeEEeeCCcEEEEEEecCC------CceEEE-ceeeEEEEEEEEEEecCCCCCceEEEEEEeeCC---CCCCe
Q 038982 32 KITWGDGRAKITEGGKALTLSIDKKL------GSGFQS-KKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE---GSHDE 101 (282)
Q Consensus 32 ~~~w~~~nv~~~~~g~~l~L~ld~~s------Gsgi~S-k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---p~~~E 101 (282)
...|.++||.+.++| .|.|++.+.. +++|.| ++.|+||+||+|||++.+ .|+|+||||++.+ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 467889999997645 5889886543 467999 999999999999999987 8999999999985 56999
Q ss_pred eeEeeeCCCCCCCcEEEeeEeeCCCC-----CceeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCC
Q 038982 102 VDMEFLGNVTGEPYTLHTNIYAQGEG-----HRERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVP 176 (282)
Q Consensus 102 ID~E~lG~~~G~p~~~~TNv~~~g~g-----~~e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 176 (282)
||||++|+. +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999973 56788899876543 2234556667788999999999999999999999999998743
Q ss_pred CCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEE
Q 038982 177 FPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVI 220 (282)
Q Consensus 177 ~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 220 (282)
.|. +||+|++|+|.+++|+.. .+....|..|.|++|+|
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~~~-----~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWWWG-----GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CCC-CCcEEEEEEEECCCCccc-----CCCCCCCcEEEEEEEEE
Confidence 676 999999999999998732 34567899999999997
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=9.5e-32 Score=245.24 Aligned_cols=177 Identities=21% Similarity=0.261 Sum_probs=134.7
Q ss_pred cCCCeEEeeCCcEEEEEEecCC-----------CceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeCC-CCCCeee
Q 038982 36 GDGRAKITEGGKALTLSIDKKL-----------GSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE-GSHDEVD 103 (282)
Q Consensus 36 ~~~nv~~~~~g~~l~L~ld~~s-----------Gsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-p~~~EID 103 (282)
.++||++. +| .|.|++.+.. +++|.||+.|+||+||||||+|.+ +.+|||||++.. +.++|||
T Consensus 56 ~~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~---~~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL---PMSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC---CccceEEEccCCCCCCCcEE
Confidence 35788875 45 5888886543 355999999999999999999976 358999999973 6899999
Q ss_pred -EeeeCCCC--CCCcEEEeeEeeCCCC-----Cc---eeeeecCCCCCCCcEEEEEEEc-cCeEEEEEcCeEEEEEeccc
Q 038982 104 -MEFLGNVT--GEPYTLHTNIYAQGEG-----HR---ERGFHLWFDPSAKFHQYSIVWN-PERIIFMVDNKAVRVHENLA 171 (282)
Q Consensus 104 -~E~lG~~~--G~p~~~~TNv~~~g~g-----~~---e~~~~l~fdp~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~ 171 (282)
||++|... ..+..+|+++|..+.+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++.+.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 89999753 2246788887743321 11 1234455677899999999999 99999999999999998754
Q ss_pred CCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEE
Q 038982 172 NLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVI 220 (282)
Q Consensus 172 ~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 220 (282)
. ...+|+++||+|+||+++|| |+...+- ...-...|..|.|++|||
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRv 256 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRV 256 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEE
Confidence 3 34567789999999999998 9832111 122234599999999998
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=1.5e-31 Score=239.80 Aligned_cols=177 Identities=26% Similarity=0.442 Sum_probs=140.9
Q ss_pred eeecCCCeEEeeCCcEEEEEEecCC----------CceEEE--ceeeEEEEEEEEEEecCCCCCceEEEEEEeeCC----
Q 038982 33 ITWGDGRAKITEGGKALTLSIDKKL----------GSGFQS--KKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE---- 96 (282)
Q Consensus 33 ~~w~~~nv~~~~~g~~l~L~ld~~s----------Gsgi~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---- 96 (282)
..+.++||.+. +| .|.|+..+.+ ++.|.| ++.|+||+||||||+|.+ +|+||||||++..
T Consensus 33 ~~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 46678899986 45 5888875433 245999 899999999999999987 8999999999873
Q ss_pred --CCCCeee-EeeeCCCCCCCcEEEeeEeeCCCC----CceeeeecCC-CCCCCcEEEEEEEccCeEEEEEcCeEEEEEe
Q 038982 97 --GSHDEVD-MEFLGNVTGEPYTLHTNIYAQGEG----HRERGFHLWF-DPSAKFHQYSIVWNPERIIFMVDNKAVRVHE 168 (282)
Q Consensus 97 --p~~~EID-~E~lG~~~G~p~~~~TNv~~~g~g----~~e~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 168 (282)
+..+||| ||++|+. +..+++++|..+.. .....+.... +..++||+|+++|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 4578999 7999973 56789999987653 2233455554 7889999999999999999999999999998
Q ss_pred cccCCC-CCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEE
Q 038982 169 NLANLG-VPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVI 220 (282)
Q Consensus 169 ~~~~~g-~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 220 (282)
+..... ..+|.++||+|+||++++++|+ |. ...-...|..|.|++|||
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRV 234 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEE
Confidence 754321 2356669999999999999998 31 134456799999999998
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.96 E-value=1.2e-28 Score=226.14 Aligned_cols=170 Identities=25% Similarity=0.340 Sum_probs=124.5
Q ss_pred CCCeEEeeCCcEEEEEEecC-------------------CCceEEEceeeEEEEEEEEEEecCCCCCceEEEEEEeeC--
Q 038982 37 DGRAKITEGGKALTLSIDKK-------------------LGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTTFYLSSL-- 95 (282)
Q Consensus 37 ~~nv~~~~~g~~l~L~ld~~-------------------sGsgi~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~-- 95 (282)
++||++. +| .|.|+..+. +++.+.||..|+|||||||||+++. ..|+||||||+++
T Consensus 43 ~~Nv~v~-dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~-~~G~wpAfW~~~~~~ 119 (269)
T cd02177 43 EKNVVIS-NG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADI-FPGVCPSFWLYSDID 119 (269)
T ss_pred ccceEEe-CC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCC-CCceEeEEEEeccCC
Confidence 4688775 46 588887543 1245889999999999999998652 2899999999985
Q ss_pred -------CCCCCeee-EeeeCCC---CCCCc----EEEeeEeeCCCCC--c--------eeeeecCCCCCCCcEEEEEEE
Q 038982 96 -------EGSHDEVD-MEFLGNV---TGEPY----TLHTNIYAQGEGH--R--------ERGFHLWFDPSAKFHQYSIVW 150 (282)
Q Consensus 96 -------~p~~~EID-~E~lG~~---~G~p~----~~~TNv~~~g~g~--~--------e~~~~l~fdp~~dfHtY~i~W 150 (282)
.|.++||| ||.+|.. .+++. .+|++++.++.+. + ...+.+++|++++||+|+|+|
T Consensus 120 ~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W 199 (269)
T cd02177 120 YSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNV 199 (269)
T ss_pred CCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEE
Confidence 26789999 8888753 12333 4555555454331 1 124567789999999999999
Q ss_pred ccCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCC---------CccCCCCccccCCCCCCeEEEEcEEEE
Q 038982 151 NPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGD---------QWATQKGRIKANWTDAPYTAHYRNLVI 220 (282)
Q Consensus 151 tp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v 220 (282)
+|++|+|||||++++++.+. +.. +||++.+++-... .|+ |+ ..+.+..|-.|+||+|||
T Consensus 200 ~~~~i~~yvDg~~~~~~~~~------~w~-~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 200 NQDEIIWYVDGVEVGRKPNK------YWH-RPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRV 267 (269)
T ss_pred eCCEEEEEECCEEEEEEcCC------ccc-cccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEE
Confidence 99999999999999998642 333 7888888774432 244 33 345677899999999998
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=3.7e-28 Score=221.70 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=124.0
Q ss_pred eecCCCeEEeeCCcEEEEEEecCC-----CceEEEceee--EE----EEEEEEEEecCCC---CCceEEEEEEeeCC---
Q 038982 34 TWGDGRAKITEGGKALTLSIDKKL-----GSGFQSKKDY--LF----ARFDVEMKLIPGN---AAGLVTTFYLSSLE--- 96 (282)
Q Consensus 34 ~w~~~nv~~~~~g~~l~L~ld~~s-----Gsgi~Sk~~~--~y----G~~eariKlp~g~---s~G~v~AFwl~~~~--- 96 (282)
+++++|+.+..+| .|.|+..+.. .++|.|+..+ .| |+||||||+|.+. ..|+||||||++..
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4567899886456 5888875542 2458887554 33 4899999999741 36999999999852
Q ss_pred -----CCCCeee-EeeeCCCCCCCcEEEeeEeeCCC-CC--ceee-ee-cCCCCCCCcEEEEEEEcc-----CeEEEEEc
Q 038982 97 -----GSHDEVD-MEFLGNVTGEPYTLHTNIYAQGE-GH--RERG-FH-LWFDPSAKFHQYSIVWNP-----ERIIFMVD 160 (282)
Q Consensus 97 -----p~~~EID-~E~lG~~~G~p~~~~TNv~~~g~-g~--~e~~-~~-l~fdp~~dfHtY~i~Wtp-----~~I~fyVD 160 (282)
|..+||| ||..|. ++.. +.++|.... ++ .+.. .. ....+.++||+|+|+|++ ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~---~~~~-~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNG---LSTG-YGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCC---CCce-EEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 5678999 999985 3343 334554321 11 1111 00 011245799999999997 99999999
Q ss_pred CeEEEEEecccCC---CCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEEe
Q 038982 161 NKAVRVHENLANL---GVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVIT 221 (282)
Q Consensus 161 G~~vr~~~~~~~~---g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (282)
|+++++++..... ..+.|.++||+|+||+++||+|+. ......-...|-.|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~~--~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWPG--APNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcCC--CCCcccccCCCceEEEEEEEEe
Confidence 9999999864221 122345699999999999999972 2101112446899999999983
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=3.9e-28 Score=225.40 Aligned_cols=182 Identities=18% Similarity=0.196 Sum_probs=123.8
Q ss_pred eeecCCCeEEeeCCcEEEEEEecC-------CCceEEE--ceeeEEEEEEEEEEecCC-CCCceEEEEEEeeCC------
Q 038982 33 ITWGDGRAKITEGGKALTLSIDKK-------LGSGFQS--KKDYLFARFDVEMKLIPG-NAAGLVTTFYLSSLE------ 96 (282)
Q Consensus 33 ~~w~~~nv~~~~~g~~l~L~ld~~-------sGsgi~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~~------ 96 (282)
..+.++|+++. +| .|+|+..+. +.+.|.| |+.|+||+||||||||.+ ...|+||||||+++.
T Consensus 36 q~Y~~~nv~v~-~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTTI-NG-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEec-CC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 35567898875 45 588887543 2345888 788999999999999973 237999999999851
Q ss_pred -------CC------CCeee-EeeeCCCC-CCCcE---E----------------EeeEeeC------CC-CCcee-ee-
Q 038982 97 -------GS------HDEVD-MEFLGNVT-GEPYT---L----------------HTNIYAQ------GE-GHRER-GF- 133 (282)
Q Consensus 97 -------p~------~~EID-~E~lG~~~-G~p~~---~----------------~TNv~~~------g~-g~~e~-~~- 133 (282)
|. .+||| ||.+|... +.... + +..+|.. .. ++..+ ..
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 32 48999 99998532 01011 1 1112211 00 11111 01
Q ss_pred ---ecCC----CCCCCcEEEEEEEcc-----CeEEEEEcCeEEEEEecccCC--C----CCCCCCCCeEEEEEeecCCCc
Q 038982 134 ---HLWF----DPSAKFHQYSIVWNP-----ERIIFMVDNKAVRVHENLANL--G----VPFPAKQPMWLIASLWNGDQW 195 (282)
Q Consensus 134 ---~l~f----dp~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~--g----~~~P~~~Pm~l~~nlW~gg~W 195 (282)
.+.- ...++||+|+|+|++ ++|+|||||+++++++..... + ..+| ++||+|+||+++||+|
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w 272 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNF 272 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEecccc
Confidence 0111 125789999999999 899999999999999864321 1 2345 4999999999999999
Q ss_pred cCCCCccccCCCCCCeEEEEcEEEEe
Q 038982 196 ATQKGRIKANWTDAPYTAHYRNLVIT 221 (282)
Q Consensus 196 at~GG~~~~d~~~~Pf~a~~~~~~v~ 221 (282)
+ |. +.+-...|..|+||+|||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 6 31 3344567999999999984
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=1.3e-26 Score=218.55 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=102.9
Q ss_pred eEEE--ceeeEEEEEEEEEEecCCCCCceEEEEEEeeCC------CCCCeee-EeeeCCCCCCC-------cEEEeeEee
Q 038982 60 GFQS--KKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE------GSHDEVD-MEFLGNVTGEP-------YTLHTNIYA 123 (282)
Q Consensus 60 gi~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~------p~~~EID-~E~lG~~~G~p-------~~~~TNv~~ 123 (282)
+|.| |+.|+|||||+|||||.+ .|+||||||++.. |..+||| ||.+|+..... ..++.++|.
T Consensus 103 ri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~ 180 (330)
T cd08024 103 RLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHW 180 (330)
T ss_pred EEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEEe
Confidence 4777 688999999999999998 7999999999862 6789999 99999753221 246666775
Q ss_pred CCCCC----cee---eeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEeccc-------------------CCCCCC
Q 038982 124 QGEGH----RER---GFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLA-------------------NLGVPF 177 (282)
Q Consensus 124 ~g~g~----~e~---~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~~~ 177 (282)
..... +.. ......+..++||+|+|+|+|++|+|||||++++++.... ..+...
T Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~a 260 (330)
T cd08024 181 GPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMA 260 (330)
T ss_pred CCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCC
Confidence 32211 111 1112245578899999999999999999999999998521 113457
Q ss_pred CCCCCeEEEEEeecCCCcc
Q 038982 178 PAKQPMWLIASLWNGDQWA 196 (282)
Q Consensus 178 P~~~Pm~l~~nlW~gg~Wa 196 (282)
|+++|+||+||+++||.|.
T Consensus 261 PFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 261 PFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCEEEEEEEEecCCCC
Confidence 9999999999999999985
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=3.8e-26 Score=214.57 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=97.1
Q ss_pred ceEEE--ceeeEEEEEEEEEEecCCCCCceEEEEEEeeCC-------CCCCeee-EeeeCCCC----CC---CcEEEeeE
Q 038982 59 SGFQS--KKDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE-------GSHDEVD-MEFLGNVT----GE---PYTLHTNI 121 (282)
Q Consensus 59 sgi~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-------p~~~EID-~E~lG~~~----G~---p~~~~TNv 121 (282)
++|.| |+.|+|||+|+|||||.| .|+||||||++.+ |..+||| ||.+|+.. |. ...+|...
T Consensus 99 ari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~ 176 (321)
T cd02179 99 ARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGP 176 (321)
T ss_pred eeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEccc
Confidence 44777 588999999999999998 7999999999862 5679999 99999842 10 02233333
Q ss_pred eeCCCC-Ccee---eeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccC----------------CCCCCCCCC
Q 038982 122 YAQGEG-HRER---GFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLAN----------------LGVPFPAKQ 181 (282)
Q Consensus 122 ~~~g~g-~~e~---~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P~~~ 181 (282)
|..... .+.. ......+..++||+|+|+|+|++|+|||||++++++..... .....|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~ 256 (321)
T cd02179 177 VLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDK 256 (321)
T ss_pred ccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCC
Confidence 321111 1110 11112345789999999999999999999999999986321 124569999
Q ss_pred CeEEEEEeecCC
Q 038982 182 PMWLIASLWNGD 193 (282)
Q Consensus 182 Pm~l~~nlW~gg 193 (282)
|++|+||+++||
T Consensus 257 ~FyliLNlAVGG 268 (321)
T cd02179 257 EFYLSLGVGVGG 268 (321)
T ss_pred CeEEEEEEEecC
Confidence 999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.7e-24 Score=203.05 Aligned_cols=158 Identities=26% Similarity=0.444 Sum_probs=131.4
Q ss_pred CCeeeecCCCeEEeeCCcEEEEEEecC-------CCceEEEcee--eEEEEEEEEEEecCCCCCceEEEEEEeeC----C
Q 038982 30 DTKITWGDGRAKITEGGKALTLSIDKK-------LGSGFQSKKD--YLFARFDVEMKLIPGNAAGLVTTFYLSSL----E 96 (282)
Q Consensus 30 ~f~~~w~~~nv~~~~~g~~l~L~ld~~-------sGsgi~Sk~~--~~yG~~eariKlp~g~s~G~v~AFwl~~~----~ 96 (282)
..+++|..+++.+..+| .|.|.+++. .++.++|..+ |+||++|+|||++.+ .|+||||||++. +
T Consensus 71 ~~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg 147 (355)
T COG2273 71 TKNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDG 147 (355)
T ss_pred ccccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCC
Confidence 44567888888887655 688888653 2355888666 999999999999976 899999999984 4
Q ss_pred CCCCeeeEeeeCCCCCCCcEEEeeEeeCCCCCceeeeecCC-CCCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCC
Q 038982 97 GSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWF-DPSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGV 175 (282)
Q Consensus 97 p~~~EID~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~ 175 (282)
..++|||+|++|+.+. +..+|+|.+.++.++.+....+.+ +..++||+|+++|.+++|+|||||++++++... .
T Consensus 148 ~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~ 222 (355)
T COG2273 148 GWPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----D 222 (355)
T ss_pred CCCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----c
Confidence 6789999999997542 356999999999888877777788 889999999999999999999999999998753 2
Q ss_pred CCCCCCCeEEEEEeecCCCcc
Q 038982 176 PFPAKQPMWLIASLWNGDQWA 196 (282)
Q Consensus 176 ~~P~~~Pm~l~~nlW~gg~Wa 196 (282)
..|. .||++++|+|.++.+.
T Consensus 223 ~~~~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 223 YIPQ-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred cCcC-CcceeEEeecccCccC
Confidence 3477 9999999999998764
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.55 E-value=8.5e-14 Score=136.38 Aligned_cols=175 Identities=22% Similarity=0.362 Sum_probs=117.3
Q ss_pred CCeEEeeCCcEEEEEEecCC--C----ce-EEE--ceeeEEEEEEEEEEecCC-CCCceEEEEEEeeC-----------C
Q 038982 38 GRAKITEGGKALTLSIDKKL--G----SG-FQS--KKDYLFARFDVEMKLIPG-NAAGLVTTFYLSSL-----------E 96 (282)
Q Consensus 38 ~nv~~~~~g~~l~L~ld~~s--G----sg-i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~-----------~ 96 (282)
+.|... +| .|+|++++.. + || ++| |+-|.-|++|++++||.. +..|+|||||++++ +
T Consensus 161 ~~vtt~-~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g 238 (504)
T PF03935_consen 161 DAVTTE-NG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDG 238 (504)
T ss_pred CCcEee-CC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCc
Confidence 455543 45 6888887532 2 34 566 777888999999999863 35799999999975 0
Q ss_pred --------------C---------------------------------CCCeee-EeeeCCCCC-CCc---EEEee----
Q 038982 97 --------------G---------------------------------SHDEVD-MEFLGNVTG-EPY---TLHTN---- 120 (282)
Q Consensus 97 --------------p---------------------------------~~~EID-~E~lG~~~G-~p~---~~~TN---- 120 (282)
+ ...||| +|....... ... .+|..
T Consensus 239 ~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~ 318 (504)
T PF03935_consen 239 MWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDI 318 (504)
T ss_pred eecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccccc
Confidence 1 135999 897654211 011 22211
Q ss_pred ----------EeeCC-------CCCceee-e----ec---CC--CCCCCcEEEEEEEccC-----eEEEEEcCeEEEEEe
Q 038982 121 ----------IYAQG-------EGHRERG-F----HL---WF--DPSAKFHQYSIVWNPE-----RIIFMVDNKAVRVHE 168 (282)
Q Consensus 121 ----------v~~~g-------~g~~e~~-~----~l---~f--dp~~dfHtY~i~Wtp~-----~I~fyVDG~~vr~~~ 168 (282)
+|... .|+.-|+ + .+ ++ ....+||+|++||.|. .|+|+|||++++++.
T Consensus 319 ~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~ 398 (504)
T PF03935_consen 319 WYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTIN 398 (504)
T ss_pred CCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEE
Confidence 11000 0111111 1 11 11 1237899999999864 899999999999998
Q ss_pred cccCC------CCCCCCCCCeEEEEEeecCCCccCCCCccccCCCC--CCeEEEEcEEEEe
Q 038982 169 NLANL------GVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTD--APYTAHYRNLVIT 221 (282)
Q Consensus 169 ~~~~~------g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~ 221 (282)
..... ....|. .||+|++|+....+|+ .+||.+ .|.+|.||+|||.
T Consensus 399 a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVY 452 (504)
T PF03935_consen 399 AEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVY 452 (504)
T ss_pred hhhcCCCCCcCccccCc-CCceeeeccccccccC------ccccccccccceEEEeEEEEe
Confidence 64321 245787 9999999999999996 688875 5889999999994
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.54 E-value=1.1e-13 Score=127.89 Aligned_cols=167 Identities=22% Similarity=0.306 Sum_probs=104.9
Q ss_pred ccccccCCeeeecC------------------CCeEEeeCCcEEEEEEecCCC---------ceEEEceeeEEEEEEEEE
Q 038982 24 KGDFNTDTKITWGD------------------GRAKITEGGKALTLSIDKKLG---------SGFQSKKDYLFARFDVEM 76 (282)
Q Consensus 24 ~~~f~~~f~~~w~~------------------~nv~~~~~g~~l~L~ld~~sG---------sgi~Sk~~~~yG~~eari 76 (282)
+.+|+++|+.--++ ..+.+ .+| .|.|.+|.... ++|.||+.|.+|++|+|+
T Consensus 10 g~~Ffd~f~f~~~~DPT~G~V~Yv~~~~A~~~gL~~v-~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~ 87 (293)
T cd02181 10 GSNFFDGFDFFTGDDPTHGFVNYVDQSTATSLGLAYV-NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADI 87 (293)
T ss_pred CCCcccCCEEcCCCCCCCeeEEEEcHHHHhhCCCeEe-eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEh
Confidence 56799999853222 12333 334 58899976531 349999999999999998
Q ss_pred -EecCCCCCceEEEEEEeeCC-CCCCeee-EeeeCCCCCCCcEEEeeE----eeCC--CC-------------Cc-----
Q 038982 77 -KLIPGNAAGLVTTFYLSSLE-GSHDEVD-MEFLGNVTGEPYTLHTNI----YAQG--EG-------------HR----- 129 (282)
Q Consensus 77 -Klp~g~s~G~v~AFwl~~~~-p~~~EID-~E~lG~~~G~p~~~~TNv----~~~g--~g-------------~~----- 129 (282)
|||.+ .|+||||||++.+ |..+||| ||.++..+....++||.- -..+ .+ +.
T Consensus 88 ~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~ 165 (293)
T cd02181 88 AHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVT 165 (293)
T ss_pred hhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceee
Confidence 99987 8999999999875 8889999 999986433223444320 0000 00 00
Q ss_pred ---eeeeecCCCCCCCcEEEEEEEccCeEEEEE---cCeEEEEEecccCC----C---CCCCC--------CCCeEEEEE
Q 038982 130 ---ERGFHLWFDPSAKFHQYSIVWNPERIIFMV---DNKAVRVHENLANL----G---VPFPA--------KQPMWLIAS 188 (282)
Q Consensus 130 ---e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyV---DG~~vr~~~~~~~~----g---~~~P~--------~~Pm~l~~n 188 (282)
...+-..|+. .+=-.|+++|+++.|+.+. +.+|- .++..... | ..||. -++++|++|
T Consensus 166 ~~~~~syG~~FN~-~GGGvyA~ew~~~~I~vWff~R~~iP~-di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn 243 (293)
T cd02181 166 STSTNSYGAGFNA-AGGGVYAMEWTSDGIKVWFFPRGSIPA-DITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFD 243 (293)
T ss_pred cCCCCcccccccc-CCCcEEEEEEccCcEEEEEecCCCCCc-ccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEE
Confidence 0112223333 2336999999999987554 22221 12211111 1 22442 178999999
Q ss_pred eecCCCcc
Q 038982 189 LWNGDQWA 196 (282)
Q Consensus 189 lW~gg~Wa 196 (282)
+=--|+||
T Consensus 244 ~tfCGdwA 251 (293)
T cd02181 244 TTFCGDWA 251 (293)
T ss_pred eecccccc
Confidence 99999998
No 17
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.40 E-value=1.1e-13 Score=96.42 Aligned_cols=36 Identities=39% Similarity=0.758 Sum_probs=29.9
Q ss_pred cCCcC---CCHHHHHHHHHHhccCeEEccCC----CCCC-CCCc
Q 038982 225 GNNQT---LTNLDEKNIRSVQDKFMIYDYCD----YGVH-PLEC 260 (282)
Q Consensus 225 w~~~~---l~~~~~~~~~~~~~~~~~y~yc~----~~~~-~~ec 260 (282)
|+++. |++.|+++|+|||+||||||||. ||.+ |+||
T Consensus 8 w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 8 WWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp GGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 55543 99999999999999999999999 9988 9999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=96.15 E-value=0.19 Score=40.11 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=43.2
Q ss_pred CCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEE
Q 038982 139 PSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNL 218 (282)
Q Consensus 139 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 218 (282)
+...||..++.|..+.+.+||||+++.+...... ...+ ....+.+ |... ....+|...++++
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~--~~~~~~i----G~~~----------~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLN--SNGPLFI----GGSG----------GGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTT--SCCEEEE----SS-S----------TT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCC--CcceEEE----eecC----------CCCCceEEEEEEE
Confidence 3488999999999999999999998765432211 1111 1112211 2221 2366999999999
Q ss_pred EEeeeecCCcCCCHHHHH
Q 038982 219 VITKYAGNNQTLTNLDEK 236 (282)
Q Consensus 219 ~v~~c~w~~~~l~~~~~~ 236 (282)
+| |. ..|+++|++
T Consensus 145 ~i----~~-~aLt~~eI~ 157 (157)
T PF13385_consen 145 RI----YN-RALTAEEIQ 157 (157)
T ss_dssp EE----ES-S---HHHHH
T ss_pred EE----EC-ccCCHHHcC
Confidence 98 44 578888874
No 19
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=93.90 E-value=0.36 Score=42.32 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=53.6
Q ss_pred EEEEecCCCceEEEceee---EEE-EEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeEeeeCCCCCCCcEEEeeEeeCC
Q 038982 50 TLSIDKKLGSGFQSKKDY---LFA-RFDVEMKLIPGNAAGLVTTFYLSSLEGSHDEVDMEFLGNVTGEPYTLHTNIYAQG 125 (282)
Q Consensus 50 ~L~ld~~sGsgi~Sk~~~---~yG-~~eariKlp~g~s~G~v~AFwl~~~~p~~~EID~E~lG~~~G~p~~~~TNv~~~g 125 (282)
.+-+...+|+++-||..- .+| +....+|+..| |..+-.+--+. ..-=++|-.-.+ |+ +-.+ -+|
T Consensus 10 ~~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~s--G~---LvA~--L~g 77 (198)
T PF09264_consen 10 SWQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNES--GS---LVAE--LEG 77 (198)
T ss_dssp -EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-TT--S----EEEE--ETT
T ss_pred eEEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcCC--CC---EEEE--Eec
Confidence 344455778888876432 366 68888888876 44444443322 111111111110 11 1111 111
Q ss_pred CCCceeeeecCCCCCCCcEEEEEEEcc--CeEEEEEcCeEEEEEe
Q 038982 126 EGHRERGFHLWFDPSAKFHQYSIVWNP--ERIIFMVDNKAVRVHE 168 (282)
Q Consensus 126 ~g~~e~~~~l~fdp~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 168 (282)
.+.+ ..+.+.-..-.+||.|.|.-.| ..-.|||||++|++..
T Consensus 78 ~ss~-~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 78 QSSN-TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp S-S--EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred CCCc-EEEecccccccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 1111 1222221112579999999987 8899999999999853
No 20
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=92.89 E-value=6 Score=34.56 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEEc--cCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEc
Q 038982 139 PSAKFHQYSIVWN--PERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYR 216 (282)
Q Consensus 139 p~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (282)
....||...+.|+ ...+.+||||+++..-. -..+..++. ...|++.- .-..-|| ..|. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~--~g~l~lG~----~q~~~gg--~~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP--GGSIILGQ----EQDSYGG--GFDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC--CCeEEEee----cccCCCC--CCCC-CcceEEEEc
Confidence 5678999999997 45799999999875322 111222222 22233321 1111134 2342 457999999
Q ss_pred EEEEeeeecCCcCCCHHHHHHHH
Q 038982 217 NLVITKYAGNNQTLTNLDEKNIR 239 (282)
Q Consensus 217 ~~~v~~c~w~~~~l~~~~~~~~~ 239 (282)
+|+| |. ..|+++|+++|.
T Consensus 157 ~v~i----w~-~~Ls~~eI~~l~ 174 (201)
T cd00152 157 DVNM----WD-SVLSPEEIKNVY 174 (201)
T ss_pred eeEE----Ec-ccCCHHHHHHHH
Confidence 9999 64 589999998874
No 21
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=92.47 E-value=7 Score=34.33 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=53.7
Q ss_pred CCCCcEEEEEEEc--cCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEc
Q 038982 139 PSAKFHQYSIVWN--PERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYR 216 (282)
Q Consensus 139 p~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (282)
....||...+.|+ ...+.+||||+++.. ..-..+..++ ..-.|++.- ..+.+ || ..| ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq-~qd~~---gg--~f~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQ-EQDSY---GG--GFD-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEe-cccCC---CC--CCC-CCcceeEEEe
Confidence 4578999999997 457999999998621 1111122222 222344433 22222 34 244 3457999999
Q ss_pred EEEEeeeecCCcCCCHHHHHHHH
Q 038982 217 NLVITKYAGNNQTLTNLDEKNIR 239 (282)
Q Consensus 217 ~~~v~~c~w~~~~l~~~~~~~~~ 239 (282)
+|+| |+ ..|++.|+++|.
T Consensus 157 ~v~i----w~-~~Ls~~eI~~l~ 174 (206)
T smart00159 157 DLNM----WD-SVLSPEEIKSVY 174 (206)
T ss_pred eeEE----ec-ccCCHHHHHHHH
Confidence 9999 64 589999998865
No 22
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=91.72 E-value=6.1 Score=31.99 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCCcEEEEEEEcc--CeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEc
Q 038982 139 PSAKFHQYSIVWNP--ERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYR 216 (282)
Q Consensus 139 p~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (282)
+...||...+.++. .+|++||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 44789999999987 799999999988653321 1122234443211111 11 12348889999
Q ss_pred EEEEee
Q 038982 217 NLVITK 222 (282)
Q Consensus 217 ~~~v~~ 222 (282)
.++|-.
T Consensus 122 evriy~ 127 (133)
T smart00560 122 EVRVYN 127 (133)
T ss_pred EEEEec
Confidence 999843
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=88.76 E-value=9.4 Score=32.87 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=49.7
Q ss_pred EEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeEeeeCCCCCCCcEEEeeEeeCCCCCceeeeecC-C-CCCCCcEEEEE
Q 038982 71 RFDVEMKLIPGNAAGLVTTFYLSSLEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLW-F-DPSAKFHQYSI 148 (282)
Q Consensus 71 ~~eariKlp~g~s~G~v~AFwl~~~~p~~~EID~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~l~-f-dp~~dfHtY~i 148 (282)
.+.+.+|..+. ..|+.-++.-. + ...++-++.-|. + ..+. ++..+..+..+..... . -....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~---~-~~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGR---A-NTLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCC---c-cEEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46677777643 35555544331 1 233444554443 2 2333 2332333333222211 1 23578999999
Q ss_pred EEccCeEEEEEcCeEEEEEe
Q 038982 149 VWNPERIIFMVDNKAVRVHE 168 (282)
Q Consensus 149 ~Wtp~~I~fyVDG~~vr~~~ 168 (282)
.+..+.+++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999887653
No 24
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=86.09 E-value=23 Score=31.20 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=71.9
Q ss_pred eeeEEEEEEEEEEecCCCCCceEEEEEEeeCC----------CCCCeeeEeeeCCCCCCCcEEEeeEeeCCCCCceeeee
Q 038982 65 KDYLFARFDVEMKLIPGNAAGLVTTFYLSSLE----------GSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFH 134 (282)
Q Consensus 65 ~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~----------p~~~EID~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~ 134 (282)
....-|.+-++.|.... . ..-|++-.+++ -..+++=+|+.+...+.-+...+.+...+.
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------- 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------- 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------
Confidence 33445677777776432 3 34455555542 012377788887654333333332111100
Q ss_pred cCCCCCCCcEEEEEEEc--cCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeE
Q 038982 135 LWFDPSAKFHQYSIVWN--PERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYT 212 (282)
Q Consensus 135 l~fdp~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~ 212 (282)
.+ ....||+-++.=+ ..+.++||||..+.++.... ..|-.+-|--=.+.+ |+. .++| . ..-||.
T Consensus 99 ~~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i--G~t--~R~g--~---~~y~f~ 164 (190)
T PF02973_consen 99 YK--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI--GGT--NRAG--S---NAYPFN 164 (190)
T ss_dssp ET--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE--SSE--EETT--E---EES--E
T ss_pred cc--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE--cce--EeCC--C---ceeccc
Confidence 01 1245888888886 67899999998888775432 233332221111122 221 1233 2 234999
Q ss_pred EEEcEEEEeeeecCCcCCCHHHHHHH
Q 038982 213 AHYRNLVITKYAGNNQTLTNLDEKNI 238 (282)
Q Consensus 213 a~~~~~~v~~c~w~~~~l~~~~~~~~ 238 (282)
-.+++++|.++ .|+++++.+.
T Consensus 165 G~I~~l~iYn~-----aLsdeel~~~ 185 (190)
T PF02973_consen 165 GTIDNLKIYNR-----ALSDEELKAR 185 (190)
T ss_dssp EEEEEEEEESS--------HHHHHHH
T ss_pred ceEEEEEEEcC-----cCCHHHHHHh
Confidence 99999999653 6888887664
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=85.61 E-value=17 Score=29.06 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=65.1
Q ss_pred eEEEEEEEEEEecCCCCCceEEEEEEeeCCCCCCeeeEeeeCCCCCCCcEEEeeEeeCCCCCceeeeecCC-CCCCCcEE
Q 038982 67 YLFARFDVEMKLIPGNAAGLVTTFYLSSLEGSHDEVDMEFLGNVTGEPYTLHTNIYAQGEGHRERGFHLWF-DPSAKFHQ 145 (282)
Q Consensus 67 ~~yG~~eariKlp~g~s~G~v~AFwl~~~~p~~~EID~E~lG~~~G~p~~~~TNv~~~g~g~~e~~~~l~f-dp~~dfHt 145 (282)
-....+++++|.... .|+. |++-+. ...+-+-+|... | .+...+.. + .....+.... -....||.
T Consensus 19 ~~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~ 84 (151)
T cd00110 19 RTRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHS 84 (151)
T ss_pred cceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccCCCCEEE
Confidence 345567777776654 4654 233222 134455566653 2 23332222 2 1222333221 23567999
Q ss_pred EEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEEE
Q 038982 146 YSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLVI 220 (282)
Q Consensus 146 Y~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 220 (282)
..|.+....++++|||..+.+..... .. ..+.....+..||......+ ...-...+|+--+++|++
T Consensus 85 v~i~~~~~~~~l~VD~~~~~~~~~~~--~~-----~~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 85 VSVERNGRSVTLSVDGERVVESGSPG--GS-----ALLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred EEEEECCCEEEEEECCccEEeeeCCC--Cc-----eeecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEe
Confidence 99999999999999998543332211 10 00111122333443221111 112245688888888876
No 26
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=85.32 E-value=4.2 Score=36.98 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=48.4
Q ss_pred EEEEEEEecCCC-----CCceEEEEEEeeCC----------------CCCCeee-EeeeCCCCCCCcEEEeeEee-CCC-
Q 038982 71 RFDVEMKLIPGN-----AAGLVTTFYLSSLE----------------GSHDEVD-MEFLGNVTGEPYTLHTNIYA-QGE- 126 (282)
Q Consensus 71 ~~eariKlp~g~-----s~G~v~AFwl~~~~----------------p~~~EID-~E~lG~~~G~p~~~~TNv~~-~g~- 126 (282)
-|-.++++|... ...=.||+||+..- ..++|+| ||.|.. |+. .+-+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~--g~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNS--GDD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccC--CCc-eeEEEEecccCcc
Confidence 366777887731 13458999999761 3689999 999976 444 56666665 332
Q ss_pred -----CCceeeeecCCCCCCCcEEEEEEEccC
Q 038982 127 -----GHRERGFHLWFDPSAKFHQYSIVWNPE 153 (282)
Q Consensus 127 -----g~~e~~~~l~fdp~~dfHtY~i~Wtp~ 153 (282)
++...-+. -|+...-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2566788888888643
No 27
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=83.98 E-value=2.4 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCCcEEEEEEEccCeEEEEEcCeEEEEEecc
Q 038982 139 PSAKFHQYSIVWNPERIIFMVDNKAVRVHENL 170 (282)
Q Consensus 139 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 170 (282)
+..+||++.|.-..++|+.+|||++|-++...
T Consensus 125 ~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 125 PPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 56799999999999999999999999888754
No 28
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=78.44 E-value=27 Score=26.72 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=48.1
Q ss_pred CCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEE
Q 038982 139 PSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNL 218 (282)
Q Consensus 139 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 218 (282)
....||+-.|.=....++..||+........... .. .-+...-.++.||............ ...|.--++++
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~--~~----~~~~~~~~l~iGg~~~~~~~~~~~~--~~~f~Gci~~l 123 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS--SS----DSLDPDGSLYIGGLPESNQPSGSVD--TPGFVGCIRDL 123 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSST--TH----HCBESEEEEEESSTTTTCTCTTSST--TSB-EEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEecccc--ce----ecccCCCCEEEecccCccccccccC--CCCcEEEcCeE
Confidence 4577999999999999999999998877654321 00 0222344566777654322110111 66888888888
Q ss_pred EEee
Q 038982 219 VITK 222 (282)
Q Consensus 219 ~v~~ 222 (282)
+|++
T Consensus 124 ~vng 127 (128)
T PF02210_consen 124 RVNG 127 (128)
T ss_dssp EETT
T ss_pred EECC
Confidence 8754
No 29
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=76.28 E-value=24 Score=30.87 Aligned_cols=86 Identities=14% Similarity=0.281 Sum_probs=48.2
Q ss_pred CCCCcEEEEEEEcc--CeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEc
Q 038982 139 PSAKFHQYSIVWNP--ERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYR 216 (282)
Q Consensus 139 p~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 216 (282)
....||.+-+.|+. ..+.+||||+....-. -..|...|. . -.+++.. .. + .-|| ..| ..-.|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~-g-G~~vlGQ-eQ-d--~~gG--~fd-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPG-G-GTLVLGQ-EQ-D--SYGG--GFD-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-S-S-EEEEESS--B-S--BTTB--TCS-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECC-C-CEEEECc-cc-c--ccCC--CcC-CccEeeEEEe
Confidence 35789999999965 6899999999543321 122433432 1 2233332 11 1 2245 344 4459999999
Q ss_pred EEEEeeeecCCcCCCHHHHHHHHH
Q 038982 217 NLVITKYAGNNQTLTNLDEKNIRS 240 (282)
Q Consensus 217 ~~~v~~c~w~~~~l~~~~~~~~~~ 240 (282)
+|++ |+ ..|++.|+++|..
T Consensus 151 ~~~i----Wd-~vLs~~eI~~l~~ 169 (195)
T PF00354_consen 151 DFNI----WD-RVLSPEEIRALAS 169 (195)
T ss_dssp EEEE----ES-S---HHHHHHHHH
T ss_pred ceEE----Ee-eeCCHHHHHHHHh
Confidence 9998 65 5899999998864
No 30
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=75.81 E-value=48 Score=28.94 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=36.5
Q ss_pred eecCCCCCCCcEEEEE--EEcc---CeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecC
Q 038982 133 FHLWFDPSAKFHQYSI--VWNP---ERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNG 192 (282)
Q Consensus 133 ~~l~fdp~~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~g 192 (282)
..+...+...||.+.| .|.+ ..|..++||+++..+.... .++.....++-+.|.-.
T Consensus 144 ~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 144 VDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp EECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEH
T ss_pred ecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECC
Confidence 3344445588998876 5765 5799999999998887632 12223677777777643
No 31
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=75.29 E-value=11 Score=33.76 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=74.9
Q ss_pred cCCCeEEeeCCcEEEEE--EecCC-C--c--eEEEceeeEEE-EEEEEEEecCCCCCceEEEEEEeeCCCCCCeee-E-e
Q 038982 36 GDGRAKITEGGKALTLS--IDKKL-G--S--GFQSKKDYLFA-RFDVEMKLIPGNAAGLVTTFYLSSLEGSHDEVD-M-E 105 (282)
Q Consensus 36 ~~~nv~~~~~g~~l~L~--ld~~s-G--s--gi~Sk~~~~yG-~~eariKlp~g~s~G~v~AFwl~~~~p~~~EID-~-E 105 (282)
|+.+|.+.++ .+.|+ ++... | + .+-.+..|-=+ +|+...+-.. .+|+..=|+--.. ..+| | | +
T Consensus 24 G~~~~t~~~~--~m~l~~~~~~e~~~~~~hfVlW~p~~Fp~~i~IsweF~p~~--epGLamlfF~Aag--~~G~-d~fd~ 96 (218)
T PF09224_consen 24 GPAKVTFQNG--RMELSGELDPEQFGDAAHFVLWCPEVFPDDIRISWEFTPLA--EPGLAMLFFAAAG--MNGE-DIFDP 96 (218)
T ss_dssp ESEEEE-GGG--SEEEE------ESSTT--EEEE-SS-B-SSEEEEEEEEEEE---SEEEEEEEEEEE--TTS---TT-T
T ss_pred CCeEEeecCC--cEEEeeeeccccccccccEEEECcccCCCCeEEEEEEEEcC--CCCEEEEEeeccc--CCCC-cccCC
Confidence 4445555443 36665 43222 1 1 24445555433 4454444433 2788887776643 1122 2 1 1
Q ss_pred eeCCC--------CCCCcEEEeeEeeCCCCC-c----------------eeeee---cCCCCCCCcEEEEEEEccCeEEE
Q 038982 106 FLGNV--------TGEPYTLHTNIYAQGEGH-R----------------ERGFH---LWFDPSAKFHQYSIVWNPERIIF 157 (282)
Q Consensus 106 ~lG~~--------~G~p~~~~TNv~~~g~g~-~----------------e~~~~---l~fdp~~dfHtY~i~Wtp~~I~f 157 (282)
-+-.. +|+-..+|..+|...... | .|..+ ...|+. .|+.-.|.=....|+|
T Consensus 97 ~l~~RtG~y~qyhs~dina~HiSYfrr~~~eeraf~t~nLRKs~gf~lvaqGaDplp~~~d~~-~~Yr~~i~K~~~~v~f 175 (218)
T PF09224_consen 97 SLKPRTGSYPQYHSGDINAYHISYFRRKWPEERAFHTCNLRKSPGFHLVAQGADPLPPVEDAR-GPYRMEIVKDGRTVRF 175 (218)
T ss_dssp TS----S-THHHHSSSEEEEEEEEEEESSHHHHTS-EEEEEEETTTEEEEEEE-----GGG---S-EEEEEEEETTEEEE
T ss_pred ccccccCcccceecccHHHHHHHHhcccCcccccccccchhhCCCcceeeccCCCCCCccccC-CCEEEEEEEcCCEEEE
Confidence 11111 245567888888754321 0 01111 122333 5666677889999999
Q ss_pred EEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCccCCCCccccCCCC-CCeEEEEcEEEE
Q 038982 158 MVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWATQKGRIKANWTD-APYTAHYRNLVI 220 (282)
Q Consensus 158 yVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 220 (282)
.|||.+|..+..+.. ...|- -.+| +|-..+ +|..|.|+++.|
T Consensus 176 ~In~L~vf~w~Dd~~--~~gPv-----------------l~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 176 SINGLPVFSWTDDGS--TYGPV-----------------LRGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp EETTEEEEEEE--SS--SSSS--------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred EECCEEEEEEEcCCC--ccCCc-----------------ccCc--EeeeeccchhhhhhccccC
Confidence 999999998875432 11232 0145 333444 699999999986
No 32
>smart00282 LamG Laminin G domain.
Probab=67.34 E-value=24 Score=27.91 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEccCeEEEEEcCeEEEE
Q 038982 140 SAKFHQYSIVWNPERIIFMVDNKAVRV 166 (282)
Q Consensus 140 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 166 (282)
...||.-.|.-....++++|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 468999999999999999999975443
No 33
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.69 E-value=18 Score=28.29 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=4.6
Q ss_pred CCchhhHHH
Q 038982 1 MSISSSSLL 9 (282)
Q Consensus 1 m~~~~~~~~ 9 (282)
|-.|++++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 665554433
No 34
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=41.68 E-value=29 Score=36.23 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=37.1
Q ss_pred CCCCcEEEEEEEccCeEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEeecCCCcc
Q 038982 139 PSAKFHQYSIVWNPERIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASLWNGDQWA 196 (282)
Q Consensus 139 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nlW~gg~Wa 196 (282)
...+||.|.+.-.--.++.||||+-..-..- -..||- .|.++-..|=+|-=|.
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCcee----ccCCcc-CcccccceeEEeeecc
Confidence 4689999999997555999999985432211 245777 6666666666677776
No 35
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=37.34 E-value=36 Score=24.97 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=19.1
Q ss_pred CCchhhHHHHHHHHHHhhhccc-cccccccCCeeeecCC
Q 038982 1 MSISSSSLLLLFSVSICCFVVT-SKGDFNTDTKITWGDG 38 (282)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~f~~~w~~~ 38 (282)
|--.|+++||.++|..+.++++ ++..+.-.+...|.-.
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSdag~~y~p~y~~~~~y~ 39 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDAGYYYYPGYNAPRRYN 39 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecCccccCCCCCCCcccC
Confidence 4445555555444444443333 3344666666666433
No 36
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=34.07 E-value=3.2e+02 Score=23.81 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCCce-EEEceeeEE-EEEEEEEEe--cCC-CCCceEEEEEEeeCCC----C------------CCeeeE
Q 038982 46 GKALTLSIDKKLGSG-FQSKKDYLF-ARFDVEMKL--IPG-NAAGLVTTFYLSSLEG----S------------HDEVDM 104 (282)
Q Consensus 46 g~~l~L~ld~~sGsg-i~Sk~~~~y-G~~eariKl--p~g-~s~G~v~AFwl~~~~p----~------------~~EID~ 104 (282)
+..|+|+-+.....| +-++..+.. -.|++.+.+ ... ...|==-|||+.++.. . ..=|=+
T Consensus 28 ~~~l~Lt~~~~~~~G~~~~~~~i~~~~~F~~~F~f~i~~~~~~~gdG~aF~l~~~~~~~~~~~g~~~~lG~~~~~~~~aV 107 (223)
T cd01951 28 SGVLRLTPDTGNQAGSAWYKTPIDLSKDFTTTFKFYLGTKGTNGADGIAFVLQNDPAGALGGGGGGGGLGYGGIGNSVAV 107 (223)
T ss_pred CCEEEECCCCCCcEEEEEECCcEeccCCEEEEEEEEEeCCCCCCCCcEEEEEecCCCCccccCCCCCccCccccCCeEEE
Confidence 447888876544333 555555554 334444433 221 1134446899997631 1 111223
Q ss_pred eeeC--CCC-CCCcEEEeeEeeCCCCCc------eeeeecCCCCC-CCcEEEEEEEcc--CeEEEEEcCeE
Q 038982 105 EFLG--NVT-GEPYTLHTNIYAQGEGHR------ERGFHLWFDPS-AKFHQYSIVWNP--ERIIFMVDNKA 163 (282)
Q Consensus 105 E~lG--~~~-G~p~~~~TNv~~~g~g~~------e~~~~l~fdp~-~dfHtY~i~Wtp--~~I~fyVDG~~ 163 (282)
||-. |.. .+|..-|..+..++.... .....+.+... ..+|...|+|++ ..|..++++..
T Consensus 108 efDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~ 178 (223)
T cd01951 108 EFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASLPNGTGLGNEHTVRITYDPTTNTLTVYLDNGS 178 (223)
T ss_pred EEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeCCCccCCCCEEEEEEEEeCCCCEEEEEECCCC
Confidence 4422 110 134444555555554321 11223333322 689999999994 88999999863
No 37
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=29.53 E-value=1.3e+02 Score=22.04 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=32.3
Q ss_pred ecCCCeEEeeCCcEEEEEEecCCCceEEEceeeEEEEEEEEEEecCCCCCceEEE
Q 038982 35 WGDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIPGNAAGLVTT 89 (282)
Q Consensus 35 w~~~nv~~~~~g~~l~L~ld~~sGsgi~Sk~~~~yG~~eariKlp~g~s~G~v~A 89 (282)
+.++++++.-+++.|.++..+..... ...+.+|.|+=+++||..-....+.|
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A 69 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTS 69 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEE
Confidence 34566666666677888775433221 34567899999999987532333333
No 38
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=27.29 E-value=91 Score=26.47 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhcccc-------------------ccccccCCeeeecCCCeEEeeCCcEEEEEE-ecCCCc
Q 038982 7 SLLLLFSVSICCFVVTS-------------------KGDFNTDTKITWGDGRAKITEGGKALTLSI-DKKLGS 59 (282)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-------------------~~~f~~~f~~~w~~~nv~~~~~g~~l~L~l-d~~sGs 59 (282)
++.|++++|.+++++++ +....++|.+-=+|+++....++..-++++ -|+.|+
T Consensus 9 LV~FIaalLiaasvag~Lt~~t~~l~~sm~d~~~~~a~~i~~dFaIIndPg~i~~~~~~g~~t~t~yiKNtG~ 81 (154)
T COG3354 9 LVMFIAALLIAASVAGALTDSTTHLSDSMNDRSDMLADMIQTDFAIINDPGQIPYVGTDGPYTYTFYIKNTGS 81 (154)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhhhhchhhHHHHHHhhccEEEecCCCCCccccCCCceEEEEEEecCCC
Confidence 34466666666655543 235788999998999888876543333333 345554
No 39
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=27.23 E-value=1.2e+02 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=28.1
Q ss_pred cCCCeEEeeCCcEEEEEEecCCCceEEEceeeEEEEEEEEEEecCC
Q 038982 36 GDGRAKITEGGKALTLSIDKKLGSGFQSKKDYLFARFDVEMKLIPG 81 (282)
Q Consensus 36 ~~~nv~~~~~g~~l~L~ld~~sGsgi~Sk~~~~yG~~eariKlp~g 81 (282)
.++.|.+.-.++.|+|+..+..-..-.....+.||.|+=++.||.+
T Consensus 20 ~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 20 EPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 3455555545557888775432111011236799999999999864
No 40
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=24.61 E-value=88 Score=23.33 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=20.7
Q ss_pred eEEEEEcCeEEEEEecccCCCCCCCCCCCeEEEEEe
Q 038982 154 RIIFMVDNKAVRVHENLANLGVPFPAKQPMWLIASL 189 (282)
Q Consensus 154 ~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~nl 189 (282)
.+.|||||+++.+-.... ...|+-..|-.-.+.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEE
Confidence 789999999996544332 1233333555555555
No 41
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=24.43 E-value=1.1e+02 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=16.0
Q ss_pred CCCeEEeeCCcEEEEEEecCCCce
Q 038982 37 DGRAKITEGGKALTLSIDKKLGSG 60 (282)
Q Consensus 37 ~~nv~~~~~g~~l~L~ld~~sGsg 60 (282)
..++.+...|..+.+.-|...||+
T Consensus 34 qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 34 QSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred ccCeeEeccEEEEEECcccCCCCc
Confidence 456677666666666557788876
No 42
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=23.36 E-value=1.2e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCCCcEEEEEEEccCeEEEEEcCeEEEEEe
Q 038982 139 PSAKFHQYSIVWNPERIIFMVDNKAVRVHE 168 (282)
Q Consensus 139 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 168 (282)
+.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 45667888777 778899999999986544
No 43
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=22.48 E-value=1.7e+02 Score=25.13 Aligned_cols=37 Identities=19% Similarity=0.496 Sum_probs=28.0
Q ss_pred eeeeecCCCCCCCcEEEEEEEccCeEEEEEcCeEEEEE
Q 038982 130 ERGFHLWFDPSAKFHQYSIVWNPERIIFMVDNKAVRVH 167 (282)
Q Consensus 130 e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 167 (282)
..++++|.- +.|=|.|+|.-..+.+..+++|..+++-
T Consensus 92 ~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 92 TKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhheeEEEE-ecCCceEEEEEeccceeeEEcCcccccc
Confidence 345666642 2334999999999999999999888763
No 44
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=21.17 E-value=1.7e+02 Score=21.93 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=29.7
Q ss_pred cCCCeEEeeCCcEEEEEEecCCCce---EEEceeeEEEEEEEEEEecCC
Q 038982 36 GDGRAKITEGGKALTLSIDKKLGSG---FQSKKDYLFARFDVEMKLIPG 81 (282)
Q Consensus 36 ~~~nv~~~~~g~~l~L~ld~~sGsg---i~Sk~~~~yG~~eariKlp~g 81 (282)
.++++++.-+++.|.++..+..... -.-...+.+|.|+-++.||..
T Consensus 23 ~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 23 SEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADH 71 (90)
T ss_pred CHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCC
Confidence 4556777666777888775433221 111246678999999999874
No 45
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=21.04 E-value=78 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCeEEEEEeecCCCccCCCCccccCCCCCCeEEEEcEEE
Q 038982 181 QPMWLIASLWNGDQWATQKGRIKANWTDAPYTAHYRNLV 219 (282)
Q Consensus 181 ~Pm~l~~nlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 219 (282)
-||.+.+++..+ .|+ |+ +|...+-.|+||+||
T Consensus 154 ~P~~~~~~~~~~-~w~--~~----~~~~~~~~m~vDwvr 185 (185)
T PF00722_consen 154 YPFSTPMNLALG-LWP--GG----DWAGPAGEMEVDWVR 185 (185)
T ss_dssp SSEEEEEEEEEE-ECE--BT----TTHSSECEEEEEEEE
T ss_pred CcccceeEEEEc-ccc--CC----CCCCCCCEEEEEeEC
Confidence 599899999887 887 43 555555589999986
No 46
>PRK01904 hypothetical protein; Provisional
Probab=20.98 E-value=1.9e+02 Score=25.83 Aligned_cols=15 Identities=0% Similarity=-0.055 Sum_probs=8.0
Q ss_pred CCCHHHHH-HHHHHhc
Q 038982 229 TLTNLDEK-NIRSVQD 243 (282)
Q Consensus 229 ~l~~~~~~-~~~~~~~ 243 (282)
+-|+++++ -++|+.+
T Consensus 202 qAd~etrk~F~~w~~~ 217 (219)
T PRK01904 202 QADKETQTRFLNWAKK 217 (219)
T ss_pred HcCHHHHHHHHHHHhh
Confidence 34555444 4667654
Done!