BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038987
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WX0|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|G Chain G, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX1|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
Length = 31
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 262 EEPAMWECKACTFLNH 277
+E A W C ACTFLNH
Sbjct: 1 DEGAQWNCTACTFLNH 16
>pdb|2WWZ|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P212121
Length = 32
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 262 EEPAMWECKACTFLNH 277
+E A W C ACTFLNH
Sbjct: 2 DEGAQWNCTACTFLNH 17
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 2 RNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND 61
R +W LLS + +K + + LG + L++R NRD +S + CH+
Sbjct: 442 RESRWLPSLLSNIENKTVINAALGFDSY--LVMRHGNRDEQS------SKQLGCYFCHDV 493
Query: 62 IAPHDA 67
+AP D+
Sbjct: 494 VAPTDS 499
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 2 RNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND 61
R +W LLS + +K + + LG + L++R NRD +S + CH+
Sbjct: 443 RESRWLPSLLSNIENKTVINAALGFDSY--LVMRHGNRDEQS------SKQLGCYFCHDV 494
Query: 62 IAPHDA 67
+AP D+
Sbjct: 495 VAPTDS 500
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 2 RNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND 61
R +W LLS + +K + + LG + L++R NRD +S + CH+
Sbjct: 443 RESRWLPSLLSNIENKTVINAALGFDSY--LVMRHGNRDEQS------SKQLGCYFCHDV 494
Query: 62 IAPHDA 67
+AP D+
Sbjct: 495 VAPTDS 500
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 2 RNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND 61
R +W LLS + +K + + LG + L++R NRD +S + CH+
Sbjct: 442 RESRWLPSLLSNIENKTVINAALGFDSY--LVMRHGNRDEQS------SKQLGCYFCHDV 493
Query: 62 IAPHDA 67
+AP D+
Sbjct: 494 VAPTDS 499
>pdb|3A9J|C Chain C, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 265 AMWECKACTFLNH 277
A W C ACTFLNH
Sbjct: 7 AQWNCTACTFLNH 19
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 2 RNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND 61
R +W LLS + +K + + LG + L++R NRD +S + CH+
Sbjct: 154 RESRWLPSLLSNIENKTVINAALGFDSY--LVMRHGNRDEQS------SKQLGCYFCHDV 205
Query: 62 IAPHDA 67
+AP D+
Sbjct: 206 VAPTDS 211
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 2 RNHKWKVKLLSEMHSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCHND 61
R +W LLS + +K + + LG + L++R NRD +S + CH+
Sbjct: 150 RESRWLPSLLSNIENKTVINAALGFDSY--LVMRHGNRDEQS------SKQLGCYFCHDV 201
Query: 62 IAPHDA 67
+AP D+
Sbjct: 202 VAPTDS 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,989,050
Number of Sequences: 62578
Number of extensions: 274103
Number of successful extensions: 573
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 11
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)