BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038987
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
Length = 269
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 1 MRNHKWKVKLLSEMHSKNA--LGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELC 58
M+ + +KV L E + ++ LG N+ G I L LR + + LP ++ TMLHEL
Sbjct: 59 MKENHFKVTNLVEFYPRDQRLLGMNVNHGSKIMLRLRCSTDEFQFLPMECIMGTMLHELT 118
Query: 59 HNDIAPHDAKFYKLWEEL--REECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQT 116
HN PHD KFY +EL R+ E R T +G+ R G S + P++ + T
Sbjct: 119 HNLFGPHDKKFYNKLDELIGRQWVIEQRGLYDTFLGNGQRLGGRANLRSNRYPMTGI-ST 177
Query: 117 ALAAAEKRAHS---NSLLPSGPKLLGGDRFVMYDLSPVQAAAMAVEKRLQYDLWCA 169
KR SL P G + DR SP + AA A E+R + D WC
Sbjct: 178 NTGIVRKRGKGVKLGSLHPEGISSI--DR----GNSPRELAAFAAERRYRDDRWCG 227
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1442.07c PE=4 SV=1
Length = 282
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 1 MRNHKWKVKLLSEM-------HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTM 53
M +H+W V LLSEM H LG N G HI+L LR +R + V T+
Sbjct: 142 MDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRT-DRYDGFRDYKTVKSTL 200
Query: 54 LHELCHNDIAPHDAKFYKLWEELREECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSL 113
+HEL HN HD+ F++L+ +L +E D G G DR +PQ
Sbjct: 201 IHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYVSDR-----ASYTPQQDNDDE 255
Query: 114 PQT------ALAAAEKRAHSNS 129
Q LAAAE+R S S
Sbjct: 256 DQKNHRRDLLLAAAERRKQSGS 277
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1
Length = 283
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 1 MRNHKWKVKLLSEM-HSKNALGSNLGAGVHIKLLLRKLNRDRESLPFHEVLDTMLHELCH 59
M+ H + V L E+ ++ G N G I+L+LR + LPF V+D LHELCH
Sbjct: 64 MKEHGFGVTSLDEVAYNAKFWGRNWNKGECIELVLR--DASNRWLPFEFVMDVFLHELCH 121
Query: 60 NDIAPHDAKFYKLWEELREECDELRSKGITGVGSF 94
PHD +F+ LR L +KG G G +
Sbjct: 122 IWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGKY 156
>sp|Q47BI0|LEU1_DECAR 2-isopropylmalate synthase OS=Dechloromonas aromatica (strain RCB)
GN=leuA PE=3 SV=1
Length = 513
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 47 HEVLDTMLHELCHNDIAPHDAKFYKL-WEELREECDEL-RSKGITGVGSFDRPGRVLGGV 104
HE+ D LH L +D+ D ++YKL + + E E+ R+ I +G + GG
Sbjct: 369 HEIFDEDLHALVSDDLVTPDQEYYKLVYSRVCSETGEMPRASVILNIGGVEHKAEADGGG 428
Query: 105 SPQPPLSSLPQTALAAAEKRAHSNSLLPSG--------PKLLGGDRFV 144
++ A + AE +S + + +G +L GDR V
Sbjct: 429 PVDATFKAIESIAGSGAELLLYSVNAITTGTDAQGEVTTRLSKGDRIV 476
>sp|Q8ZQQ6|BIOC_SALTY Malonyl-CoA O-methyltransferase BioC OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=bioC PE=3 SV=1
Length = 251
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 64 PHDAKFYKL-WEELREE-CDELRSKGITGVGSFDRPGRVLGGVSP-QPPLSSLPQTALAA 120
PHDA+ + L W L + C +LR ++ + RPG V+ + Q L L Q A A
Sbjct: 98 PHDAEVFDLAWSNLAVQWCGDLRD-ALSELYRVVRPGGVVAFTTLCQGSLPELRQ-AWQA 155
Query: 121 AEKRAHSNSLLP 132
+ RAH+NS LP
Sbjct: 156 VDNRAHANSFLP 167
>sp|Q5U303|TAB2_RAT TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Rattus
norvegicus GN=Tab2 PE=2 SV=2
Length = 693
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 262 EEPAMWECKACTFLNH 277
EE A W C ACTFLNH
Sbjct: 663 EEGAQWNCTACTFLNH 678
>sp|Q99K90|TAB2_MOUSE TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Mus
musculus GN=Tab2 PE=1 SV=1
Length = 693
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 262 EEPAMWECKACTFLNH 277
EE A W C ACTFLNH
Sbjct: 663 EEGAQWNCTACTFLNH 678
>sp|Q9EST3|4ET_MOUSE Eukaryotic translation initiation factor 4E transporter OS=Mus
musculus GN=Eif4enif1 PE=1 SV=2
Length = 983
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 91 VGSFDRPGRVLGGVSPQPPLSSLPQTALAAAE---KRAHSNSLLPSGPKLLGGDRF--VM 145
+GS + +L +P PP+S + +T A+A+ R S PSGP+ L GD F +
Sbjct: 547 MGSLEATASLLSQRAPSPPMSQVFRTQAASADYLHPRIPSPIGFPSGPQQLLGDPFQGMR 606
Query: 146 YDLSPVQAAAMAVE 159
+SPV A +E
Sbjct: 607 KPMSPVSAQMSQLE 620
>sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 SV=4
Length = 3942
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 79 ECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTA---LAAAEKRAHSNSLLPSG 134
+ + R+ + G P V G VSPQPPLS+ P TA A E + S + +PSG
Sbjct: 276 QAEAARATSVPGPTQATAPPEV-GRVSPQPPLSTKPSTAEPRPPAGEAQGKSATTVPSG 333
>sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE=1 SV=3
Length = 3938
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 79 ECDELRSKGITGVGSFDRPGRVLGGVSPQPPLSSLPQTA---LAAAEKRAHSNSLLPSG 134
+ + R+ + G P V G VSPQPPLS+ P TA A E + S + +PSG
Sbjct: 275 QAEAARATSVPGPTQATAPPEV-GRVSPQPPLSTKPSTAEPRPPAGEAQGKSATTVPSG 332
>sp|Q9NYJ8|TAB2_HUMAN TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 OS=Homo
sapiens GN=TAB2 PE=1 SV=1
Length = 693
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 262 EEPAMWECKACTFLNH 277
+E A W C ACTFLNH
Sbjct: 663 DEGAQWNCTACTFLNH 678
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,519,577
Number of Sequences: 539616
Number of extensions: 4868804
Number of successful extensions: 13168
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 13121
Number of HSP's gapped (non-prelim): 55
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)