BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038990
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSL----SGERIPAKKTSVKMKTLNPEWNEDFKL 318
IL VKV+ I L K DIFGASDPYV+LSL + +T KTLNP+WNE+F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
V +P L V+D ++ D LG VPL L
Sbjct: 82 RV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 418 KTKMIKKCRDPIWNEEFQF 436
+TK IKK +P WNEEF F
Sbjct: 63 QTKTIKKTLNPKWNEEFYF 81
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 252 GSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPE 311
GS G +K VGIL VKV++A LL D G SDP+ L L +R+ +T K LNPE
Sbjct: 4 GSSGDVKD-VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPE 59
Query: 312 WNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
WN+ F +KD VL++ V+D + D LG +PL S+
Sbjct: 60 WNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--F 316
G+L V +I+A L MD+ G SDPYV+ SL G R+ +KTS+K TLNP +NE F
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 317 KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQ 376
+ + E L + V D++ +G ++ +G+ V + P+ + L NP P
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEML---ANPRKPV 267
Query: 377 DKKFERKESEVGKATEYGAKDLEGKHHN 404
+ + E + + G K L K ++
Sbjct: 268 EHWHQLVEEKTLSSFTKGGKGLSEKENS 295
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V++++A+ L D G SDPYV++ L +R +T V KTLNP +NE F+ +V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 324 ETQVLQLH--VYDWEKVGTHDKLGMQVVPLRSLTPNET---KELTLDLVK-NTNPNDPQD 377
E +LH VYD+++ HD +G QVV L E + L D+++ + D +
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIG-QVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140
Query: 378 KKFERK--------ESEVGKATEYGAKDLEGKHHNNPY--AVVICRG---EQKKTKMIKK 424
F + KA+ A DL G ++PY A +I G +++KT + K
Sbjct: 141 LNFSLCYLPTAGLLTVTIIKASNLKAMDLTG--FSDPYVKASLISEGRRLKKRKTSIKKN 198
Query: 425 CRDPIWNEEFQFD 437
+P +NE FD
Sbjct: 199 TLNPTYNEALVFD 211
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWNEEFQFDFEEAPL-K 444
+A + AKD G ++PY + ++KK TK+ +K +PI+NE FQF A L +
Sbjct: 28 QALDLPAKDSNG--FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85
Query: 445 EKIHIEV 451
K+H V
Sbjct: 86 RKLHFSV 92
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNED--F 316
G+L V +I+A L MD+ G SDPYV+ SL G R+ +KTS+K TLNP +NE F
Sbjct: 152 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Query: 317 KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQ 376
+ + E L + V D++ +G ++ +G+ V + P+ + L NP P
Sbjct: 212 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEML---ANPRKPV 268
Query: 377 DKKFERKESEVGKATEYGAKDLEGKHHN 404
+ + E + + G K L K ++
Sbjct: 269 EHWHQLVEEKTLSSFTKGGKGLSEKENS 296
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V++++A+ L D G SDPYV++ L +R +T V KTLNP +NE F+ +V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 324 ETQVLQLH--VYDWEKVGTHDKLGMQVVPLRSLTPNET---KELTLDLVK-NTNPNDPQD 377
E +LH VYD+++ HD +G QVV L E + L D+++ + D +
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIG-QVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 141
Query: 378 KKFERK--------ESEVGKATEYGAKDLEGKHHNNPY--AVVICRG---EQKKTKMIKK 424
F + KA+ A DL G ++PY A +I G +++KT + K
Sbjct: 142 LNFSLCYLPTAGLLTVTIIKASNLKAMDLTG--FSDPYVKASLISEGRRLKKRKTSIKKN 199
Query: 425 CRDPIWNEEFQFD 437
+P +NE FD
Sbjct: 200 TLNPTYNEALVFD 212
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWNEEFQFDFEEAPL-K 444
+A + AKD G ++PY + ++KK TK+ +K +PI+NE FQF A L +
Sbjct: 29 QALDLPAKDSNG--FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 86
Query: 445 EKIHIEV 451
K+H V
Sbjct: 87 RKLHFSV 93
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSL----SGERIPAKKTSVKMKTLNPEWNEDFKL 318
I+ V+VI I L K DI GASDPYV+++L +G + ++K K+LNP+WNE+
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILF 79
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKEL 362
V P+ L V+D ++ D LG VPL L P E L
Sbjct: 80 RVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL-PTENPRL 121
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 324 E--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
E + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 125
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKL 318
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 319 TVKDPETQVLQ--LHVYDWEKVGTHDKLGMQVVPLRS 353
V + Q +Q + V D++K+G +D +G V S
Sbjct: 209 EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 245
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSL----SGERIPAKKTSVKMKTLNPEWNEDFKL 318
++ VKVI I L K DI GASDPYV+++L SG + ++K K+LNP+WNE+
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILF 67
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
V P+ + V+D ++ D LG VPL L
Sbjct: 68 RVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 324 E--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
E + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 377 DKKFERKESEVG--KATEYGAKDLEGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWN 431
D F+ + VG +A E A D+ G ++PY V ++KK TK+ +K +P++N
Sbjct: 28 DYDFQNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 432 EEFQF 436
E+F F
Sbjct: 86 EQFTF 90
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 324 E--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
E + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 377 DKKFERKESEVG--KATEYGAKDLEGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWN 431
D F+ + VG +A E A D+ G ++PY V ++KK TK+ +K +P++N
Sbjct: 28 DYDFQNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 432 EEFQF 436
E+F F
Sbjct: 86 EQFTF 90
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 324 E--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
E + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 377 DKKFERKESEVG--KATEYGAKDLEGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWN 431
D F+ + VG +A E A D+ G ++PY V ++KK TK+ +K +P++N
Sbjct: 36 DYDFQNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93
Query: 432 EEFQF 436
E+F F
Sbjct: 94 EQFTF 98
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L V +I+A L +D+ G SDPYV++ L ++ +T V KTLNP +NE F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 324 E--TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366
E + L + VYD+++ HD +G VP+ ++ E DL
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 123
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 377 DKKFERKESEVG--KATEYGAKDLEGKHHNNPYAVVICRGEQKK---TKMIKKCRDPIWN 431
D F+ + VG +A E A D+ G ++PY V ++KK TK+ +K +P++N
Sbjct: 11 DYDFQNNQLLVGIIQAAELPALDMGGT--SDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 68
Query: 432 EEFQF 436
E+F F
Sbjct: 69 EQFTF 73
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK------TLNPEWNEDFK 317
LHV V A L+ MD G SDPYV+L L IP K K K TLNP+WNE F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKL----IPDPKNESKQKTKTIRSTLNPQWNESFT 73
Query: 318 LTVKDPET-QVLQLHVYDWEKVGTHDKLG 345
+K + + L + ++DW++ +D +G
Sbjct: 74 FKLKPSDKDRRLSVEIWDWDRTTRNDFMG 102
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
++KTK I+ +P WNE F F + + ++ +E+
Sbjct: 54 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 89
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK------TLNPEWNEDFK 317
LHV V A L+ MD G SDPYV+L L IP K K K TLNP+WNE F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKL----IPDPKNESKQKTKTIRSTLNPQWNESFT 74
Query: 318 LTVKDPET-QVLQLHVYDWEKVGTHDKLG 345
+K + + L + ++DW++ +D +G
Sbjct: 75 FKLKPSDKDRRLSVEIWDWDRTTRNDFMG 103
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
++KTK I+ +P WNE F F + + ++ +E+
Sbjct: 55 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 90
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 253 SLGAIKKPVG------ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK 306
+LG I+ VG L VK+++A L D G SDP+V++ L ++ +T VK K
Sbjct: 11 NLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK 70
Query: 307 TLNPEWNEDFKLTVKDPETQVLQ----LHVYDWEKVGTHDKLGMQVVPLRSLTPNETKEL 362
LNP WNE F L P +V+Q L V D+++ +D +G +PL + + +
Sbjct: 71 NLNPHWNETF-LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 129
Query: 363 TLDL 366
DL
Sbjct: 130 WKDL 133
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 386 EVGKATEYGAKDLEGKHHNNPYAVVICRGEQK---KTKMIKKCRDPIWNEEFQFD 437
++ KA E AKD G ++P+ + ++K +TK+ +K +P WNE F F+
Sbjct: 31 KIMKAQELPAKDFSGT--SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
+HV V A L+ MD G SDPYV+L L + +KT TLNP WNE F +K
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 322 DPETQ-VLQLHVYDWEKVGTHDKLG 345
+ + L + V+DW++ +D +G
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMG 106
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
++KT+ +K +P+WNE F F+ + ++ ++ +EV
Sbjct: 58 KQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEV 93
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V +IR + L MD G SDP+V+L L + + KT +K KTLNPE+NE+F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 320 VK--DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQD 377
+K D + L + V+D++ ++D +G + + + E + + +KN +D
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA--KGERLKHWYECLKN------KD 126
Query: 378 KKFER 382
KK ER
Sbjct: 127 KKIER 131
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V +IR + L MD G SDP+V+L L + + KT +K KTLNPE+NE+F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 320 VK--DPETQVLQLHVYDWEKVGTHDKLG 345
+K D + L + V+D++ ++D +G
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKT------LNPEWNEDF 316
+L V V A L+ MD G SDPYV+L L IP K+ K KT LNPEWNE F
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKL----IPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 317 KLTVKDPET-QVLQLHVYDWEKVGTHDKLG 345
+ +K+ + + L + ++DW+ +D +G
Sbjct: 88 RFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
++KTK IK +P WNE F+F +E+ ++ +E+
Sbjct: 69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEI 104
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKT------LNPEWNEDF 316
+L V V A L+ MD G SDPYV+L L IP K+ K KT LNPEWNE F
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKL----IPDPKSESKQKTKTIKSSLNPEWNETF 228
Query: 317 KLTVKDPET-QVLQLHVYDWEKVGTHDKLG 345
+ +K+ + + L + ++DW+ +D +G
Sbjct: 229 RFQLKESDKDRRLSVEIWDWDLTSRNDFMG 258
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
++KTK IK +P WNE F+F +E+ ++ +E+
Sbjct: 210 KQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEI 245
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKT------LNPEWNEDFK 317
LHV V A L+ D G SDPYV+L L IP K K KT LNP+WNE F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKL----IPDPKNESKQKTKTIRSTLNPQWNESFT 75
Query: 318 LTVKDPET-QVLQLHVYDWEKVGTHDKLG 345
+K + + L + ++DW++ +D G
Sbjct: 76 FKLKPSDKDRRLSVEIWDWDRTTRNDFXG 104
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
++KTK I+ +P WNE F F + + ++ +E+
Sbjct: 56 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 91
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK------TLNPEWNEDFK 317
L +IRA L MD G +DPYV+L L +P S K++ T NP WNE +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHL----LPGASKSNKLRTKTLRNTRNPVWNETLQ 86
Query: 318 ---LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
+T +D + + L++ V D +K G ++ +G L+ L N+ K + L +
Sbjct: 87 YHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK------TLNPEWNEDFK 317
L +IRA L MD G +DPYV+L L +P S K++ T NP WNE +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHL----LPGASKSNKLRTKTLRNTRNPVWNETLQ 84
Query: 318 ---LTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368
+T +D + + L++ V D +K G ++ +G L+ L N+ K + L +
Sbjct: 85 YHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 138
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V +IR + L D G SDP+V+L L + + KT +K KTLNPE+NE+F
Sbjct: 37 GGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 320 VK--DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQD 377
+K D + L + V+D++ ++D +G + + + E + + +KN +D
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA--KGERLKHWYECLKN------KD 148
Query: 378 KKFER 382
KK ER
Sbjct: 149 KKIER 153
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 320 VKDPETQVLQ--LHVYDWEKVGTHDKLGMQVVPLRS 353
V + Q +Q + V D++K+G +D +G V S
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 113
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 320 VKDPETQVLQ--LHVYDWEKVGTHDKLGMQVVPLRS 353
V + Q +Q + V D++K+G +D +G V S
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 112
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLT 319
G L V ++ A L KMD+ G SDPYV++ L +G+R+ KKT++K TLNP +NE F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 320 VKDPETQVLQ--LHVYDWEKVGTHDKLGMQVVPLRS 353
V + Q +Q + V D++K+G +D +G V S
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTV 320
+G L V VI A L G S+PY ++S+ + + T TLNP+WN + + +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQFFI 442
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL-TPNETK 360
KD VL L ++D ++ D LG +P+ + T E+K
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK 483
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVK--MKTLNPEWNEDFK 317
P G L V ++ A L D DPYVQL+ R +K++V M T PEWNE F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC---RTQDQKSNVAEGMGT-TPEWNETFI 63
Query: 318 LTVKDPETQVLQLHVYDWEKVGTH-DKLGMQVVPLR 352
TV + T+ L+ ++D + VGT D +G +PL
Sbjct: 64 FTVSEGTTE-LKAKIFD-KDVGTEDDAVGEATIPLE 97
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 394 GAKDLEGKHHNNPYAVVICRGEQKKTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHI 449
G +D + ++ +PY + CR + +K+ + + P WNE F F E + K I
Sbjct: 21 GLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKI 77
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 266 VKVIRAIRLLKM---DIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
V V+RA ++ K D+ DPYV+L +S K+T +NP WNE F+ +
Sbjct: 7 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66
Query: 323 PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKEL 362
+ VL++ + D V + LG + S+ E KE+
Sbjct: 67 NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEV 105
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPA-----------KKTSVKM 305
I +G L + +++A L+ D G SDP+V++ L R ++T
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 306 KTLNPEWNEDF---KLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLT 355
K+LNPEWN+ ++++ + L++ V+D+++ ++D LG ++ L S +
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS 125
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 266 VKVIRAIRLLKM---DIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
V V+RA ++ K D+ DPYV+L +S K+T +NP WNE F+ +
Sbjct: 22 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81
Query: 323 PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKEL 362
+ VL++ + D V + LG + S+ E KE+
Sbjct: 82 NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEV 120
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 266 VKVIRAIRLLKM---DIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD 322
V V+RA ++ K D+ DPYV+L +S K+T +NP WNE F+ +
Sbjct: 22 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81
Query: 323 PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKEL 362
+ VL++ + D V + LG + S+ E KE+
Sbjct: 82 NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEV 120
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTV- 320
L V V++A L K D+ G SDPYV+++L + +RI KKT VK T N +NE F +
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 321 -KDPETQVLQLHVYDWEKVGTHDKLGMQVV 349
+ E ++ V D E+ ++ +G V+
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 266 VKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKL---TV 320
V +I+A L MDI G SDPYV++ L +R+ KKT K + LNP +NE F T
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 321 KDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360
K ET ++ + V D +K+ +D +G + +S P E K
Sbjct: 80 KLRETTII-ITVMDKDKLSRNDVIGKIYLSWKS-GPGEVK 117
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 283 SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKL-TVKDPETQVLQLH--VYDWEKVG 339
SDPY+++++ E+ KT V KTL+P ++E F + + Q L LH + +++
Sbjct: 44 SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS 103
Query: 340 THDKLGMQVVPLRSLTPNETKEL 362
D +G ++PL + +E K L
Sbjct: 104 RDDIIGEVLIPLSGIELSEGKML 126
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 266 VKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
+ V+ A R L SDPYV++ L R +KT V KTLNP +++ F +V P
Sbjct: 27 IVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86
Query: 324 ETQVLQLHV 332
E Q L V
Sbjct: 87 EVQRRTLDV 95
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
+ + V+ A L K D F DP+ ++ + G +VK TL+P+WN+ + L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLYVG-- 63
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELT------LDLVKNTNPND 374
+T + + V++ +K+ H K G + L N L LDL K NP+D
Sbjct: 64 KTDSITISVWNHKKI--HKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSD 117
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP 323
L + V+ A L+K D F DP+ ++ + G +VK TL+P+WN+ + L +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVK-NTLDPKWNQHYDLYIGKS 63
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELT------LDLVKNTNPND 374
++ + + W H K G + L N L LDL K PND
Sbjct: 64 DSVTISV----WNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCK-LGPND 115
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 283 SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQ--VLQLHVYDWEKVGT 340
S+PYV++ L ++ +K+T VK KT P + E + + E Q L L V D++K
Sbjct: 54 SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSR 113
Query: 341 HDKLGMQVVPL 351
H +G VPL
Sbjct: 114 HCVIGKVSVPL 124
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 311 EWNEDFKLTVKDPETQVLQLHVYDWEKVGT-------HDKLGMQVVPLRSLTPNETKELT 363
+++E++ + K +T L L +YD E+V T +K G VP + +TP E KE+
Sbjct: 73 KYSEEYGFSFK--QTGYLFL-LYDDEEVKTFKRNIEIQNKFG---VPTKLITPEEAKEIV 126
Query: 364 --LDL----VKNTNPNDPQDKKFERKESEVGKATEYGAKDLE 399
LD+ + NP D + FE + KA EYGAK LE
Sbjct: 127 PLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLE 168
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGAS--DP--YVQLSLSGERIPAKKTSV-KMKTLNPEWNEDFKL 318
L V++I +L K++ S DP V++ G +++T+V NP W+ +F+
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
V P+ +++ V D++ +D +G +P SL
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 592
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 264 LHVKVIRAIRLLKMDIFGAS--DP--YVQLSLSGERIPAKKTSV-KMKTLNPEWNEDFKL 318
L V++I +L K++ S DP V++ G +++T+V NP W+ +F+
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 319 TVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354
V P+ +++ V D++ +D +G +P SL
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 594
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 35.8 bits (81), Expect = 0.065, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 249 ILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTL 308
+LDG+ K + + V+ A L D G+SDPYV + + + K+T L
Sbjct: 8 VLDGT----SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNL 60
Query: 309 NPEWNEDFKLTVKDPETQVLQLHVYDWE-----------KVGTHDKLGMQVVPLRSLT 355
NP W E+F + ++ ++ V D + K + D LG ++ +R+L+
Sbjct: 61 NPVWEENFHFECHNSSDRI-KVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS 117
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 395 AKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHI 449
AKD G ++PY V +K+TK I +P+W E F F+ + + K+ +
Sbjct: 31 AKDKTGS--SDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRV 83
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVK 321
G+L V V A + K FG DP V + E+ KK LNP WNE + ++
Sbjct: 7 GMLRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVD---NELNPVWNEILEFDLR 62
Query: 322 DPE---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTN 371
+ L + V D+E +G + +G V L+ LT ++++ L L+ N
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN 115
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 262 GILHVKVIRAIRLL-KMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKL 318
G L V+VIRA L K PYV++ L +G I KKT + KTL+P + +
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 319 TVKDPETQVLQLHVYDWEKVGTHD 342
+ P+ +VLQ+ V W G D
Sbjct: 90 D-ESPQGKVLQVIV--WGDYGRXD 110
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 255 GAIKKPV----GILHVKVIRAIRLLKMDIFGAS-DPYVQLSL--SGERIPAKKTSVKMKT 307
GA+K V G L + V+ L+ D GA +PYV+ L + +KT + KT
Sbjct: 9 GAVKLSVSYRNGTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKISRKT 66
Query: 308 LNPEWNEDFKLTVKDPET---QVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE 361
NP +NE + ET + LQL V E + + LG +PL+ N +KE
Sbjct: 67 RNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF--NLSKE 121
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 283 SDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPET----QVLQLHVYDWE 336
S+PYV+ L R +KTS+K T+NP ++E + + PE+ + LQ V+
Sbjct: 45 SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI--PESLLAQRTLQFSVWHHG 102
Query: 337 KVGTHDKLGMQVVPLRS 353
+ G + LG + + S
Sbjct: 103 RFGRNTFLGEAEIQMDS 119
>pdb|3CGM|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3CGN|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3LUO|A Chain A, Crystal Structure And Functional Characterization Of The
The Prolyl Isomerase And Chaperone Slyd
Length = 158
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 33/122 (27%)
Query: 324 ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFERK 383
E + Q HV + G HD G+QVVPL + P+D
Sbjct: 49 EGEAFQAHVPAEKAYGPHDPEGVQVVPLSAF--------------------PED------ 82
Query: 384 ESEVGKATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL 443
+EV ++ A+D+EG + P VV GE+ P+ ++ F E +
Sbjct: 83 -AEVVPGAQFYAQDMEG--NPMPLTVVAVEGEEVTVDF----NHPLAGKDLDFQVEVVKV 135
Query: 444 KE 445
+E
Sbjct: 136 RE 137
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 413 RGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451
R +KT+ + CRDP ++E F F +E ++++ + V
Sbjct: 61 RLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 281 GASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338
G DPYV++SL E R+ +KT +P ++E F V++ + Q +L V W +
Sbjct: 45 GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRA 103
Query: 339 GTHDKLGM 346
+ G+
Sbjct: 104 SQSRQSGL 111
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 394 GAKDL---EGKHHNNPYAVVI-----CRGEQKKTKMIKKCRDPIWNEEF 434
GAKDL E NPY + +++TK +KK +P WN+ F
Sbjct: 26 GAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 394 GAKDL---EGKHHNNPYAVVI-----CRGEQKKTKMIKKCRDPIWNEEF 434
GAKDL E NPY + +++TK +KK +P WN+ F
Sbjct: 29 GAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,681,383
Number of Sequences: 62578
Number of extensions: 615904
Number of successful extensions: 1274
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 104
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)