Query 038990
Match_columns 505
No_of_seqs 396 out of 2378
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 8.7E-64 1.9E-68 528.5 32.3 478 2-505 165-694 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 4.6E-28 9.9E-33 246.6 19.1 226 256-493 161-409 (421)
3 KOG2059 Ras GTPase-activating 99.8 2.7E-20 5.9E-25 189.2 14.2 235 262-503 5-276 (800)
4 cd08395 C2C_Munc13 C2 domain t 99.8 1.4E-19 3E-24 152.3 13.5 107 263-370 1-114 (120)
5 cd08677 C2A_Synaptotagmin-13 C 99.8 4.9E-20 1.1E-24 152.8 10.4 107 256-365 8-117 (118)
6 cd04028 C2B_RIM1alpha C2 domai 99.8 2.7E-19 5.9E-24 155.4 13.3 114 260-374 27-144 (146)
7 cd04016 C2_Tollip C2 domain pr 99.8 9.9E-19 2.1E-23 147.4 13.8 110 388-502 4-121 (121)
8 cd08381 C2B_PI3K_class_II C2 d 99.8 3.9E-19 8.4E-24 151.2 10.6 105 261-366 12-121 (122)
9 cd04016 C2_Tollip C2 domain pr 99.8 1E-18 2.3E-23 147.3 12.7 103 261-368 1-105 (121)
10 KOG1030 Predicted Ca2+-depende 99.8 7.1E-19 1.5E-23 151.2 10.5 99 259-361 3-101 (168)
11 cd08393 C2A_SLP-1_2 C2 domain 99.8 8.6E-19 1.9E-23 149.9 10.7 110 257-366 10-124 (125)
12 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.7E-18 3.6E-23 147.0 12.3 102 263-368 1-111 (126)
13 cd08682 C2_Rab11-FIP_classI C2 99.8 1.6E-18 3.5E-23 148.7 12.0 102 264-368 1-109 (126)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 2.7E-18 5.9E-23 147.2 13.3 110 389-501 2-126 (126)
15 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.7E-18 3.6E-23 148.0 11.2 110 257-366 10-124 (125)
16 cd08387 C2A_Synaptotagmin-8 C2 99.8 2E-18 4.3E-23 147.7 11.1 111 257-367 11-123 (124)
17 cd08376 C2B_MCTP_PRT C2 domain 99.8 4E-18 8.7E-23 144.0 12.7 103 263-368 1-103 (116)
18 cd08391 C2A_C2C_Synaptotagmin_ 99.8 8.4E-18 1.8E-22 143.2 13.5 110 388-502 3-121 (121)
19 cd04036 C2_cPLA2 C2 domain pre 99.8 6E-18 1.3E-22 143.6 12.1 104 264-368 2-105 (119)
20 cd08388 C2A_Synaptotagmin-4-11 99.8 5.7E-18 1.2E-22 145.3 12.0 111 257-367 11-127 (128)
21 cd08385 C2A_Synaptotagmin-1-5- 99.8 4.7E-18 1E-22 145.4 11.2 110 257-366 11-122 (124)
22 cd04041 C2A_fungal C2 domain f 99.8 4.3E-18 9.3E-23 142.5 10.4 95 262-356 1-99 (111)
23 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.4E-17 5.3E-22 141.1 15.0 112 388-504 6-124 (126)
24 cd08680 C2_Kibra C2 domain fou 99.8 4.6E-18 1E-22 144.3 10.2 110 256-365 8-123 (124)
25 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.4E-17 5.2E-22 139.3 14.5 110 389-503 3-115 (116)
26 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.5E-17 3.2E-22 141.6 13.0 102 264-368 2-103 (121)
27 cd08375 C2_Intersectin C2 doma 99.7 1.7E-17 3.7E-22 143.6 13.1 97 257-356 10-106 (136)
28 cd04042 C2A_MCTP_PRT C2 domain 99.7 4.4E-17 9.5E-22 138.7 14.9 111 389-504 3-121 (121)
29 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.8E-17 3.8E-22 141.6 12.3 104 263-369 1-104 (123)
30 cd04039 C2_PSD C2 domain prese 99.7 1.2E-17 2.7E-22 138.5 10.9 95 262-359 1-100 (108)
31 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.3E-17 2.8E-22 142.7 11.2 110 257-366 10-127 (128)
32 cd08379 C2D_MCTP_PRT_plant C2 99.7 3.2E-17 6.9E-22 139.2 13.4 105 389-498 3-125 (126)
33 cd08681 C2_fungal_Inn1p-like C 99.7 2.3E-17 4.9E-22 139.9 12.1 110 388-502 3-118 (118)
34 cd04032 C2_Perforin C2 domain 99.7 2.7E-17 5.9E-22 139.8 12.4 107 247-357 13-120 (127)
35 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.5E-17 5.4E-22 141.1 12.4 111 257-367 11-124 (125)
36 cd04036 C2_cPLA2 C2 domain pre 99.7 4.3E-17 9.4E-22 138.3 13.6 109 389-502 3-117 (119)
37 cd04019 C2C_MCTP_PRT_plant C2 99.7 4.3E-17 9.3E-22 143.3 13.9 111 389-503 3-132 (150)
38 COG5038 Ca2+-dependent lipid-b 99.7 3.6E-16 7.9E-21 167.9 23.5 278 220-504 655-1162(1227)
39 cd08681 C2_fungal_Inn1p-like C 99.7 1.5E-17 3.2E-22 141.1 10.4 103 262-368 1-104 (118)
40 cd08389 C2A_Synaptotagmin-14_1 99.7 2E-17 4.4E-22 141.1 11.3 111 256-367 10-123 (124)
41 cd08378 C2B_MCTP_PRT_plant C2 99.7 3.6E-17 7.8E-22 138.9 12.6 109 389-503 3-120 (121)
42 cd04022 C2A_MCTP_PRT_plant C2 99.7 4.1E-17 8.9E-22 140.1 12.6 112 389-503 3-126 (127)
43 cd04050 C2B_Synaptotagmin-like 99.7 3.7E-17 7.9E-22 135.4 11.8 100 263-368 1-102 (105)
44 cd04010 C2B_RasA3 C2 domain se 99.7 4.5E-17 9.7E-22 142.4 12.1 107 263-371 1-125 (148)
45 cd08375 C2_Intersectin C2 doma 99.7 1.2E-16 2.6E-21 138.4 14.6 111 388-502 17-135 (136)
46 cd08521 C2A_SLP C2 domain firs 99.7 2.7E-17 5.9E-22 140.5 10.2 110 257-366 9-123 (123)
47 cd04024 C2A_Synaptotagmin-like 99.7 9.9E-17 2.1E-21 138.0 13.6 111 388-502 3-128 (128)
48 cd08685 C2_RGS-like C2 domain 99.7 2.2E-17 4.8E-22 139.6 8.9 106 260-366 10-119 (119)
49 cd04022 C2A_MCTP_PRT_plant C2 99.7 4.8E-17 1E-21 139.7 11.0 103 263-368 1-108 (127)
50 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.4E-16 3E-21 135.3 13.6 109 389-502 3-121 (121)
51 cd04030 C2C_KIAA1228 C2 domain 99.7 5.4E-17 1.2E-21 139.4 11.3 110 257-366 11-126 (127)
52 cd08677 C2A_Synaptotagmin-13 C 99.7 3.4E-17 7.5E-22 135.8 9.5 98 388-488 16-118 (118)
53 cd04024 C2A_Synaptotagmin-like 99.7 7.5E-17 1.6E-21 138.8 12.1 104 262-368 1-109 (128)
54 cd08390 C2A_Synaptotagmin-15-1 99.7 7.4E-17 1.6E-21 137.8 11.9 111 256-366 8-121 (123)
55 cd08678 C2_C21orf25-like C2 do 99.7 2.3E-16 5E-21 135.2 14.9 111 389-504 2-121 (126)
56 cd04019 C2C_MCTP_PRT_plant C2 99.7 6.6E-17 1.4E-21 142.2 11.7 104 263-369 1-109 (150)
57 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 9.1E-17 2E-21 136.4 12.1 102 264-368 2-104 (121)
58 cd04031 C2A_RIM1alpha C2 domai 99.7 6.4E-17 1.4E-21 138.6 11.0 109 257-366 11-124 (125)
59 cd08373 C2A_Ferlin C2 domain f 99.7 2.7E-16 5.9E-21 135.0 14.6 111 392-505 2-118 (127)
60 cd08391 C2A_C2C_Synaptotagmin_ 99.7 9.9E-17 2.1E-21 136.6 11.6 103 262-368 1-109 (121)
61 cd08688 C2_KIAA0528-like C2 do 99.7 7.2E-17 1.6E-21 134.8 10.1 101 264-367 1-108 (110)
62 cd04052 C2B_Tricalbin-like C2 99.7 1.5E-16 3.3E-21 133.1 12.0 99 402-505 11-111 (111)
63 cd04050 C2B_Synaptotagmin-like 99.7 2.3E-16 5.1E-21 130.6 12.6 97 389-492 3-104 (105)
64 cd08676 C2A_Munc13-like C2 dom 99.7 1.2E-16 2.7E-21 140.1 11.4 106 256-366 22-153 (153)
65 cd04046 C2_Calpain C2 domain p 99.7 3.9E-16 8.5E-21 133.7 13.4 100 260-364 1-100 (126)
66 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.2E-16 2.5E-21 142.6 10.5 109 258-366 23-136 (162)
67 cd08394 C2A_Munc13 C2 domain f 99.7 3.1E-16 6.8E-21 131.3 12.3 101 389-496 5-110 (127)
68 cd08406 C2B_Synaptotagmin-12 C 99.7 6.7E-17 1.5E-21 139.6 8.6 97 257-353 10-110 (136)
69 cd08678 C2_C21orf25-like C2 do 99.7 2.7E-16 5.9E-21 134.8 12.0 101 264-368 1-101 (126)
70 cd04045 C2C_Tricalbin-like C2 99.7 2.9E-16 6.2E-21 133.1 11.5 104 262-369 1-104 (120)
71 cd04015 C2_plant_PLD C2 domain 99.7 4.4E-16 9.6E-21 138.4 13.2 105 261-369 6-140 (158)
72 cd08407 C2B_Synaptotagmin-13 C 99.7 1E-16 2.2E-21 138.3 8.4 109 257-367 10-124 (138)
73 cd04043 C2_Munc13_fungal C2 do 99.7 3.7E-16 7.9E-21 134.1 11.9 105 263-367 2-109 (126)
74 cd04038 C2_ArfGAP C2 domain pr 99.7 3.4E-16 7.4E-21 136.5 11.7 93 261-358 1-93 (145)
75 cd08400 C2_Ras_p21A1 C2 domain 99.7 6.9E-16 1.5E-20 132.1 12.8 103 261-369 3-105 (126)
76 cd04014 C2_PKC_epsilon C2 doma 99.7 1.3E-15 2.9E-20 131.7 14.6 109 388-504 6-130 (132)
77 cd08395 C2C_Munc13 C2 domain t 99.7 7.5E-16 1.6E-20 129.6 12.6 100 389-491 3-113 (120)
78 cd04037 C2E_Ferlin C2 domain f 99.7 4.9E-16 1.1E-20 132.6 11.5 93 263-356 1-93 (124)
79 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 5.6E-16 1.2E-20 131.8 11.8 102 264-368 2-104 (121)
80 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.1E-16 2.3E-21 138.7 7.5 110 257-368 8-121 (133)
81 cd04018 C2C_Ferlin C2 domain t 99.7 6.9E-16 1.5E-20 135.2 12.5 93 263-358 1-108 (151)
82 cd04040 C2D_Tricalbin-like C2 99.7 7.9E-16 1.7E-20 129.7 12.5 103 264-368 1-103 (115)
83 cd04049 C2_putative_Elicitor-r 99.7 5.4E-16 1.2E-20 132.6 11.5 104 262-368 1-108 (124)
84 cd04015 C2_plant_PLD C2 domain 99.7 1.3E-15 2.8E-20 135.4 14.3 96 402-503 56-158 (158)
85 cd08377 C2C_MCTP_PRT C2 domain 99.7 6.5E-16 1.4E-20 131.1 11.9 100 262-367 1-100 (119)
86 cd08382 C2_Smurf-like C2 domai 99.7 6.5E-16 1.4E-20 131.8 11.4 100 264-367 2-104 (123)
87 cd08381 C2B_PI3K_class_II C2 d 99.7 4.5E-16 9.8E-21 132.3 10.3 99 387-488 14-121 (122)
88 cd04009 C2B_Munc13-like C2 dom 99.7 4.6E-16 1E-20 134.6 10.5 101 257-357 11-119 (133)
89 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.2E-15 2.6E-20 130.2 13.0 108 389-500 3-122 (123)
90 cd04014 C2_PKC_epsilon C2 doma 99.7 9.8E-16 2.1E-20 132.5 12.4 103 261-367 3-117 (132)
91 cd08378 C2B_MCTP_PRT_plant C2 99.7 5.8E-16 1.2E-20 131.5 10.3 98 263-368 1-103 (121)
92 cd04028 C2B_RIM1alpha C2 domai 99.7 1.1E-15 2.4E-20 132.9 12.1 99 388-491 31-139 (146)
93 cd08394 C2A_Munc13 C2 domain f 99.6 1.3E-15 2.8E-20 127.7 11.5 98 262-368 2-101 (127)
94 cd08675 C2B_RasGAP C2 domain s 99.6 1.1E-15 2.4E-20 132.6 11.4 108 264-372 1-124 (137)
95 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1E-15 2.2E-20 132.6 11.2 104 263-367 1-114 (133)
96 cd04011 C2B_Ferlin C2 domain s 99.6 1.3E-15 2.8E-20 127.5 11.4 98 262-366 4-108 (111)
97 cd08688 C2_KIAA0528-like C2 do 99.6 1.2E-15 2.6E-20 127.4 11.1 99 389-490 2-109 (110)
98 cd04044 C2A_Tricalbin-like C2 99.6 1.9E-15 4.1E-20 129.2 12.6 112 388-504 4-124 (124)
99 cd04048 C2A_Copine C2 domain f 99.6 7.7E-16 1.7E-20 130.8 10.0 99 268-366 6-112 (120)
100 cd08685 C2_RGS-like C2 domain 99.6 6.8E-16 1.5E-20 130.5 9.4 99 388-488 14-119 (119)
101 cd04018 C2C_Ferlin C2 domain t 99.6 1.7E-15 3.8E-20 132.6 12.3 104 389-495 3-130 (151)
102 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.6E-16 5.6E-21 136.8 7.1 108 257-366 10-121 (136)
103 cd04010 C2B_RasA3 C2 domain se 99.6 1.3E-15 2.9E-20 133.2 11.5 99 389-490 3-122 (148)
104 cd08692 C2B_Tac2-N C2 domain s 99.6 1E-15 2.3E-20 130.1 10.5 98 257-354 9-110 (135)
105 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.5E-15 3.2E-20 129.7 11.3 109 257-366 10-123 (123)
106 cd04044 C2A_Tricalbin-like C2 99.6 1.8E-15 3.8E-20 129.4 11.7 98 261-360 1-99 (124)
107 cd08377 C2C_MCTP_PRT C2 domain 99.6 4.7E-15 1E-19 125.8 14.2 107 389-502 4-118 (119)
108 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.3E-16 7.1E-21 135.8 7.1 109 257-367 9-121 (134)
109 cd08405 C2B_Synaptotagmin-7 C2 99.6 8.7E-16 1.9E-20 133.5 9.8 98 257-354 10-111 (136)
110 cd08408 C2B_Synaptotagmin-14_1 99.6 1.3E-15 2.8E-20 132.2 10.4 100 256-355 9-113 (138)
111 cd04011 C2B_Ferlin C2 domain s 99.6 2.2E-15 4.7E-20 126.2 11.4 98 389-490 7-110 (111)
112 cd08402 C2B_Synaptotagmin-1 C2 99.6 5.4E-16 1.2E-20 134.8 7.9 99 256-354 9-111 (136)
113 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 3.6E-15 7.9E-20 129.2 12.8 109 389-502 3-132 (133)
114 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.7E-15 3.6E-20 129.4 10.4 100 387-489 16-125 (125)
115 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 4.6E-15 1E-19 126.1 13.1 108 389-501 3-120 (121)
116 cd08690 C2_Freud-1 C2 domain f 99.6 5.3E-15 1.1E-19 129.5 13.5 108 262-369 4-122 (155)
117 cd04017 C2D_Ferlin C2 domain f 99.6 5.1E-15 1.1E-19 128.4 13.3 103 263-368 2-117 (135)
118 cd04027 C2B_Munc13 C2 domain s 99.6 4.7E-15 1E-19 127.2 12.9 101 263-369 2-113 (127)
119 cd04017 C2D_Ferlin C2 domain f 99.6 8E-15 1.7E-19 127.2 14.4 114 389-505 4-134 (135)
120 cd08410 C2B_Synaptotagmin-17 C 99.6 1.8E-15 3.9E-20 131.2 10.2 98 257-354 9-110 (135)
121 cd08690 C2_Freud-1 C2 domain f 99.6 1E-14 2.2E-19 127.8 14.3 113 389-503 5-137 (155)
122 cd08393 C2A_SLP-1_2 C2 domain 99.6 2E-15 4.4E-20 129.0 9.6 99 388-489 17-125 (125)
123 cd04013 C2_SynGAP_like C2 doma 99.6 1.1E-14 2.4E-19 126.1 14.1 114 388-505 13-141 (146)
124 cd04046 C2_Calpain C2 domain p 99.6 1.5E-14 3.2E-19 123.9 14.8 110 387-504 4-123 (126)
125 cd08409 C2B_Synaptotagmin-15 C 99.6 7.5E-16 1.6E-20 133.8 6.5 111 257-368 10-124 (137)
126 cd08392 C2A_SLP-3 C2 domain fi 99.6 3.6E-15 7.9E-20 127.6 10.3 100 387-489 16-128 (128)
127 cd04039 C2_PSD C2 domain prese 99.6 6.7E-15 1.5E-19 122.1 11.4 90 388-480 3-99 (108)
128 PLN03200 cellulose synthase-in 99.6 3.2E-15 6.9E-20 172.5 12.3 113 388-504 1982-2101(2102)
129 cd04051 C2_SRC2_like C2 domain 99.6 3.6E-15 7.7E-20 127.7 9.7 104 263-368 1-114 (125)
130 KOG0696 Serine/threonine prote 99.6 4.1E-16 8.8E-21 150.9 4.0 106 260-366 178-286 (683)
131 cd08680 C2_Kibra C2 domain fou 99.6 4.4E-15 9.6E-20 126.0 9.4 98 388-488 16-124 (124)
132 cd08373 C2A_Ferlin C2 domain f 99.6 1.1E-14 2.3E-19 125.1 12.0 96 268-368 2-99 (127)
133 KOG1030 Predicted Ca2+-depende 99.6 5.2E-15 1.1E-19 127.5 9.7 88 388-480 8-98 (168)
134 cd08686 C2_ABR C2 domain in th 99.6 7.9E-15 1.7E-19 121.3 10.1 82 264-352 1-91 (118)
135 cd08382 C2_Smurf-like C2 domai 99.6 1.6E-14 3.5E-19 123.2 12.3 106 389-500 3-122 (123)
136 cd04026 C2_PKC_alpha_gamma C2 99.6 8E-15 1.7E-19 126.6 10.6 107 262-369 13-122 (131)
137 cd04043 C2_Munc13_fungal C2 do 99.6 3.2E-14 6.9E-19 122.0 14.1 109 389-503 4-121 (126)
138 cd00276 C2B_Synaptotagmin C2 d 99.6 1.7E-15 3.8E-20 131.3 6.3 111 257-369 9-123 (134)
139 cd04047 C2B_Copine C2 domain s 99.6 1E-14 2.2E-19 122.0 10.5 95 268-363 6-107 (110)
140 cd08691 C2_NEDL1-like C2 domai 99.6 2.7E-14 5.8E-19 123.2 12.9 104 263-369 2-122 (137)
141 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.3E-14 2.9E-19 124.0 10.7 100 387-489 17-123 (124)
142 cd04027 C2B_Munc13 C2 domain s 99.6 3.4E-14 7.5E-19 121.8 13.2 108 389-500 4-127 (127)
143 cd08383 C2A_RasGAP C2 domain ( 99.6 3.8E-14 8.3E-19 119.8 13.1 108 389-502 3-117 (117)
144 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.5E-14 3.3E-19 123.7 10.3 99 388-489 18-123 (124)
145 cd04030 C2C_KIAA1228 C2 domain 99.6 2E-14 4.4E-19 123.4 10.0 102 387-489 17-127 (127)
146 cd08407 C2B_Synaptotagmin-13 C 99.6 5E-15 1.1E-19 127.8 6.0 110 388-505 17-137 (138)
147 cd04045 C2C_Tricalbin-like C2 99.5 6.9E-14 1.5E-18 118.5 12.7 107 388-500 3-113 (120)
148 cd04021 C2_E3_ubiquitin_ligase 99.5 5.3E-14 1.2E-18 120.2 12.1 103 262-369 2-109 (125)
149 cd04051 C2_SRC2_like C2 domain 99.5 3.5E-14 7.5E-19 121.6 10.9 107 389-498 3-125 (125)
150 cd04031 C2A_RIM1alpha C2 domai 99.5 3E-14 6.5E-19 122.0 10.4 98 388-489 18-125 (125)
151 cd08406 C2B_Synaptotagmin-12 C 99.5 7.1E-15 1.5E-19 126.9 6.2 110 388-505 17-135 (136)
152 cd08692 C2B_Tac2-N C2 domain s 99.5 1.5E-14 3.3E-19 123.0 7.6 111 388-505 16-135 (135)
153 cd04038 C2_ArfGAP C2 domain pr 99.5 1.4E-13 3E-18 120.1 12.8 87 388-479 4-92 (145)
154 cd08691 C2_NEDL1-like C2 domai 99.5 2E-13 4.4E-18 117.8 13.7 109 389-500 4-136 (137)
155 cd08675 C2B_RasGAP C2 domain s 99.5 8.6E-14 1.9E-18 120.7 11.3 101 389-492 2-122 (137)
156 KOG0696 Serine/threonine prote 99.5 6.1E-15 1.3E-19 142.9 4.3 106 386-495 180-293 (683)
157 cd08521 C2A_SLP C2 domain firs 99.5 6.4E-14 1.4E-18 119.6 10.2 98 388-488 16-123 (123)
158 cd08409 C2B_Synaptotagmin-15 C 99.5 1.8E-14 3.9E-19 125.1 6.8 112 388-505 17-136 (137)
159 cd04026 C2_PKC_alpha_gamma C2 99.5 7.6E-14 1.6E-18 120.5 10.7 105 388-496 15-127 (131)
160 cd04041 C2A_fungal C2 domain f 99.5 7.4E-14 1.6E-18 116.8 10.3 97 388-490 3-108 (111)
161 PLN03008 Phospholipase D delta 99.5 1.4E-13 3.1E-18 146.2 14.5 98 402-505 75-179 (868)
162 cd04049 C2_putative_Elicitor-r 99.5 2.7E-13 5.8E-18 115.9 13.2 100 389-491 4-109 (124)
163 cd04021 C2_E3_ubiquitin_ligase 99.5 2.8E-13 6.1E-18 115.7 13.1 106 389-500 5-124 (125)
164 cd04032 C2_Perforin C2 domain 99.5 1.1E-13 2.4E-18 117.7 10.5 88 388-478 30-119 (127)
165 KOG1013 Synaptic vesicle prote 99.5 1.1E-14 2.3E-19 137.1 4.4 214 257-473 88-326 (362)
166 cd04040 C2D_Tricalbin-like C2 99.5 4.1E-13 9E-18 113.1 13.3 99 389-491 2-104 (115)
167 cd08388 C2A_Synaptotagmin-4-11 99.5 1.7E-13 3.7E-18 117.5 10.9 101 386-489 16-127 (128)
168 PF00168 C2: C2 domain; Inter 99.5 8.6E-14 1.9E-18 110.1 8.3 85 264-348 1-85 (85)
169 cd08386 C2A_Synaptotagmin-7 C2 99.5 2.9E-13 6.3E-18 115.8 11.5 99 388-489 18-124 (125)
170 cd08389 C2A_Synaptotagmin-14_1 99.5 1.6E-13 3.5E-18 117.0 9.8 98 388-489 18-123 (124)
171 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.7E-13 3.6E-18 122.3 10.1 102 386-490 27-138 (162)
172 cd08408 C2B_Synaptotagmin-14_1 99.5 4.7E-14 1E-18 122.4 6.2 111 388-505 17-137 (138)
173 cd00275 C2_PLC_like C2 domain 99.5 2.6E-13 5.5E-18 116.7 10.5 94 263-357 3-102 (128)
174 cd08402 C2B_Synaptotagmin-1 C2 99.5 7.3E-14 1.6E-18 121.4 6.9 110 388-505 17-135 (136)
175 cd08404 C2B_Synaptotagmin-4 C2 99.5 9.2E-14 2E-18 120.7 7.4 109 388-504 17-134 (136)
176 cd08390 C2A_Synaptotagmin-15-1 99.5 3.5E-13 7.6E-18 115.0 10.8 99 388-489 16-122 (123)
177 cd08384 C2B_Rabphilin_Doc2 C2 99.5 7.2E-14 1.6E-18 121.0 6.4 103 387-494 14-125 (133)
178 PLN03008 Phospholipase D delta 99.5 3.1E-13 6.8E-18 143.6 12.4 106 261-370 13-160 (868)
179 cd04013 C2_SynGAP_like C2 doma 99.5 6E-13 1.3E-17 115.4 11.7 102 260-369 9-114 (146)
180 cd00276 C2B_Synaptotagmin C2 d 99.5 9.5E-14 2.1E-18 120.4 6.7 110 388-505 16-134 (134)
181 cd08686 C2_ABR C2 domain in th 99.4 2.1E-12 4.6E-17 106.9 13.2 105 389-501 2-117 (118)
182 cd08676 C2A_Munc13-like C2 dom 99.4 6.6E-13 1.4E-17 116.6 10.4 92 388-488 30-153 (153)
183 cd04048 C2A_Copine C2 domain f 99.4 6.4E-13 1.4E-17 112.8 10.0 99 391-490 5-114 (120)
184 cd04052 C2B_Tricalbin-like C2 99.4 4.7E-13 1E-17 111.9 8.5 86 279-367 9-95 (111)
185 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.8E-13 3.8E-18 119.0 6.0 105 388-497 17-130 (136)
186 cd08410 C2B_Synaptotagmin-17 C 99.4 3.7E-13 7.9E-18 116.7 6.7 109 388-503 16-133 (135)
187 cd04037 C2E_Ferlin C2 domain f 99.4 1.4E-12 3.1E-17 111.2 10.2 86 389-478 3-93 (124)
188 cd00275 C2_PLC_like C2 domain 99.4 5.7E-12 1.2E-16 108.2 13.6 106 389-502 5-127 (128)
189 cd08383 C2A_RasGAP C2 domain ( 99.4 4.6E-12 1E-16 107.0 12.1 97 264-368 2-100 (117)
190 cd04009 C2B_Munc13-like C2 dom 99.4 1.9E-12 4.1E-17 112.0 9.7 89 388-479 18-119 (133)
191 cd08403 C2B_Synaptotagmin-3-5- 99.4 8E-13 1.7E-17 114.5 7.0 105 388-497 16-129 (134)
192 PLN03200 cellulose synthase-in 99.4 2.2E-12 4.7E-17 149.5 10.6 107 258-369 1976-2083(2102)
193 cd08374 C2F_Ferlin C2 domain s 99.3 1E-11 2.3E-16 105.7 11.2 95 264-358 2-125 (133)
194 KOG1028 Ca2+-dependent phospho 99.3 8.8E-12 1.9E-16 127.5 11.5 115 388-505 169-296 (421)
195 smart00239 C2 Protein kinase C 99.3 1.8E-11 4E-16 99.5 10.2 97 264-360 2-98 (101)
196 cd04047 C2B_Copine C2 domain s 99.3 2E-11 4.3E-16 102.0 9.9 93 390-488 4-108 (110)
197 KOG1011 Neurotransmitter relea 99.3 3.9E-12 8.4E-17 128.5 6.0 102 257-362 290-402 (1283)
198 cd04035 C2A_Rabphilin_Doc2 C2 99.3 5.1E-11 1.1E-15 101.6 10.9 90 388-481 17-116 (123)
199 cd00030 C2 C2 domain. The C2 d 99.2 4.8E-11 1E-15 96.7 10.2 100 264-365 1-101 (102)
200 KOG1326 Membrane-associated pr 99.2 2.7E-11 5.9E-16 128.5 7.9 92 261-353 612-703 (1105)
201 PF00168 C2: C2 domain; Inter 99.2 6.7E-11 1.5E-15 93.3 6.9 78 389-470 2-85 (85)
202 PF10296 DUF2404: Putative int 99.1 1.9E-10 4.1E-15 92.0 8.8 85 76-161 1-89 (91)
203 PLN02223 phosphoinositide phos 99.1 2.6E-10 5.6E-15 117.0 11.2 99 261-359 408-513 (537)
204 PLN02270 phospholipase D alpha 99.1 9.8E-10 2.1E-14 117.3 13.5 111 389-505 11-150 (808)
205 KOG1326 Membrane-associated pr 99.1 9.3E-11 2E-15 124.5 4.4 83 389-475 616-703 (1105)
206 cd00030 C2 C2 domain. The C2 d 99.1 1.8E-09 3.8E-14 87.4 10.9 96 389-488 2-102 (102)
207 KOG1011 Neurotransmitter relea 99.1 2.8E-10 6E-15 115.3 7.1 108 389-500 298-421 (1283)
208 smart00239 C2 Protein kinase C 99.0 1.9E-09 4.1E-14 87.5 10.4 88 389-480 3-96 (101)
209 cd08374 C2F_Ferlin C2 domain s 99.0 1.5E-09 3.3E-14 92.4 9.1 89 389-480 3-125 (133)
210 PLN02230 phosphoinositide phos 98.9 3.9E-09 8.5E-14 110.5 10.3 99 261-359 468-574 (598)
211 PLN02952 phosphoinositide phos 98.9 4.9E-09 1.1E-13 110.0 11.0 104 261-367 469-580 (599)
212 KOG2059 Ras GTPase-activating 98.9 3.8E-09 8.3E-14 108.8 9.0 110 389-504 8-126 (800)
213 KOG1328 Synaptic vesicle prote 98.9 8.9E-10 1.9E-14 113.2 4.4 100 257-356 942-1049(1103)
214 KOG0169 Phosphoinositide-speci 98.9 5.2E-09 1.1E-13 109.6 8.6 98 263-360 617-721 (746)
215 PLN02223 phosphoinositide phos 98.9 2.4E-08 5.1E-13 102.8 13.2 108 388-502 411-536 (537)
216 PLN02222 phosphoinositide phos 98.9 1.1E-08 2.4E-13 107.0 10.8 99 261-359 451-557 (581)
217 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.6E-08 3.4E-13 80.9 7.3 86 264-357 1-89 (109)
218 PLN02228 Phosphoinositide phos 98.8 2.5E-08 5.4E-13 104.1 10.6 98 262-359 431-537 (567)
219 PLN02952 phosphoinositide phos 98.7 1.2E-07 2.5E-12 99.8 13.3 97 388-491 472-582 (599)
220 PLN02270 phospholipase D alpha 98.7 6.1E-08 1.3E-12 103.8 11.4 105 261-369 7-130 (808)
221 KOG1264 Phospholipase C [Lipid 98.7 6.7E-08 1.4E-12 100.8 9.4 95 262-357 1065-1163(1267)
222 KOG1327 Copine [Signal transdu 98.7 1.5E-07 3.2E-12 96.2 11.6 173 299-478 43-236 (529)
223 KOG1328 Synaptic vesicle prote 98.7 2.8E-09 6.2E-14 109.6 -0.9 87 389-478 950-1049(1103)
224 PLN02222 phosphoinositide phos 98.6 3.6E-07 7.8E-12 95.8 13.1 108 388-502 454-580 (581)
225 cd08689 C2_fungal_Pkc1p C2 dom 98.6 2.2E-07 4.7E-12 74.5 8.3 81 389-479 2-89 (109)
226 PLN02230 phosphoinositide phos 98.6 3.2E-07 7E-12 96.3 12.1 108 388-502 471-597 (598)
227 KOG0169 Phosphoinositide-speci 98.5 7.6E-07 1.6E-11 93.7 12.0 110 388-504 618-745 (746)
228 PLN02228 Phosphoinositide phos 98.5 1.1E-06 2.4E-11 92.0 12.6 110 388-504 433-562 (567)
229 KOG1031 Predicted Ca2+-depende 98.5 4.5E-07 9.7E-12 91.5 8.8 110 389-501 6-134 (1169)
230 KOG1264 Phospholipase C [Lipid 98.4 7.7E-07 1.7E-11 93.1 9.3 99 389-494 1068-1175(1267)
231 PLN02352 phospholipase D epsil 98.4 1.6E-06 3.4E-11 93.0 10.3 90 404-505 36-132 (758)
232 KOG1031 Predicted Ca2+-depende 98.4 4.4E-07 9.6E-12 91.5 5.8 92 262-356 3-98 (1169)
233 KOG0905 Phosphoinositide 3-kin 98.3 3.3E-07 7.2E-12 99.3 4.1 107 260-366 1522-1633(1639)
234 KOG1013 Synaptic vesicle prote 98.1 3.3E-06 7.2E-11 80.4 5.3 96 256-351 227-326 (362)
235 KOG0905 Phosphoinositide 3-kin 98.0 4E-06 8.7E-11 91.2 4.6 101 388-491 1526-1636(1639)
236 PLN02352 phospholipase D epsil 98.0 2.1E-05 4.5E-10 84.5 9.2 100 260-369 8-113 (758)
237 cd08683 C2_C2cd3 C2 domain fou 98.0 1.3E-05 2.8E-10 66.4 5.6 86 403-488 32-143 (143)
238 cd08684 C2A_Tac2-N C2 domain f 97.9 5.5E-06 1.2E-10 63.5 2.6 91 265-357 2-95 (103)
239 cd08684 C2A_Tac2-N C2 domain f 97.9 1.1E-05 2.3E-10 61.9 3.1 92 390-487 3-102 (103)
240 PLN02964 phosphatidylserine de 97.8 3.4E-05 7.3E-10 82.3 6.1 91 257-357 49-140 (644)
241 KOG3532 Predicted protein kina 97.7 0.0003 6.6E-09 72.9 10.5 227 59-293 81-358 (1051)
242 KOG2060 Rab3 effector RIM1 and 97.5 0.0001 2.2E-09 71.7 5.0 110 259-369 266-380 (405)
243 KOG1327 Copine [Signal transdu 97.4 0.00022 4.8E-09 73.3 5.3 87 269-356 143-236 (529)
244 KOG3837 Uncharacterized conser 97.3 0.00028 6.1E-09 69.3 4.9 113 389-503 370-503 (523)
245 KOG2060 Rab3 effector RIM1 and 97.2 0.00064 1.4E-08 66.3 6.5 99 389-491 272-380 (405)
246 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00055 1.2E-08 56.9 4.7 93 264-357 1-133 (143)
247 PF12416 DUF3668: Cep120 prote 97.0 0.066 1.4E-06 53.2 18.1 212 264-489 2-315 (340)
248 PLN02964 phosphatidylserine de 96.8 0.0019 4.2E-08 69.2 6.2 98 386-491 54-154 (644)
249 PF12416 DUF3668: Cep120 prote 96.8 0.012 2.6E-07 58.4 10.8 112 389-502 3-131 (340)
250 cd08398 C2_PI3K_class_I_alpha 96.1 0.044 9.5E-07 48.4 9.2 90 262-355 8-107 (158)
251 cd08398 C2_PI3K_class_I_alpha 95.8 0.037 8.1E-07 48.9 7.5 86 389-476 11-106 (158)
252 cd08693 C2_PI3K_class_I_beta_d 95.6 0.079 1.7E-06 47.7 9.0 92 262-355 8-121 (173)
253 cd08380 C2_PI3K_like C2 domain 95.6 0.072 1.6E-06 47.1 8.7 105 263-368 9-122 (156)
254 PF10358 NT-C2: N-terminal C2 95.4 0.5 1.1E-05 40.9 13.1 113 389-505 10-137 (143)
255 PF15627 CEP76-C2: CEP76 C2 do 95.1 0.22 4.8E-06 43.5 9.6 113 389-504 12-151 (156)
256 cd08693 C2_PI3K_class_I_beta_d 94.9 0.11 2.4E-06 46.7 7.8 90 388-477 10-121 (173)
257 KOG3837 Uncharacterized conser 94.8 0.019 4.2E-07 56.8 2.7 110 258-367 363-486 (523)
258 cd04012 C2A_PI3K_class_II C2 d 94.6 0.15 3.2E-06 45.9 7.8 94 262-355 8-120 (171)
259 KOG1265 Phospholipase C [Lipid 94.2 0.08 1.7E-06 57.3 5.9 90 261-358 702-798 (1189)
260 PF00792 PI3K_C2: Phosphoinosi 94.1 0.64 1.4E-05 40.3 10.4 80 290-369 11-101 (142)
261 cd08397 C2_PI3K_class_III C2 d 94.0 0.13 2.8E-06 45.6 6.0 72 402-476 28-107 (159)
262 cd08397 C2_PI3K_class_III C2 d 93.7 0.18 3.9E-06 44.6 6.4 74 281-354 28-107 (159)
263 cd08399 C2_PI3K_class_I_gamma 93.6 0.46 9.9E-06 42.8 8.7 90 263-353 11-121 (178)
264 cd08380 C2_PI3K_like C2 domain 93.1 0.37 8.1E-06 42.5 7.4 87 389-476 11-107 (156)
265 PF15625 CC2D2AN-C2: CC2D2A N- 92.8 1.5 3.3E-05 39.2 10.9 95 403-503 36-161 (168)
266 KOG1452 Predicted Rho GTPase-a 92.5 0.31 6.8E-06 46.8 6.2 91 258-352 47-139 (442)
267 PF10358 NT-C2: N-terminal C2 91.9 3.1 6.7E-05 35.8 11.6 104 260-367 5-119 (143)
268 cd08687 C2_PKN-like C2 domain 91.3 2.4 5.3E-05 33.3 8.8 84 403-502 8-92 (98)
269 PF00792 PI3K_C2: Phosphoinosi 91.2 1.3 2.8E-05 38.4 8.3 56 418-476 23-85 (142)
270 KOG1265 Phospholipase C [Lipid 90.7 0.74 1.6E-05 50.2 7.3 84 389-480 706-798 (1189)
271 cd08399 C2_PI3K_class_I_gamma 90.5 2 4.3E-05 38.7 9.0 89 389-477 13-123 (178)
272 smart00142 PI3K_C2 Phosphoinos 90.2 2 4.4E-05 34.7 8.1 74 264-337 13-92 (100)
273 cd08695 C2_Dock-B C2 domains f 90.2 2.9 6.4E-05 37.9 9.8 55 297-351 53-111 (189)
274 PF15627 CEP76-C2: CEP76 C2 do 89.1 2.5 5.4E-05 37.1 8.2 106 259-367 6-130 (156)
275 PF14429 DOCK-C2: C2 domain in 89.1 3.7 8E-05 37.3 9.9 69 298-367 60-135 (184)
276 cd04012 C2A_PI3K_class_II C2 d 87.5 1.5 3.2E-05 39.4 6.1 89 388-476 10-119 (171)
277 PTZ00447 apical membrane antig 86.8 4.4 9.5E-05 39.7 8.9 104 389-500 61-170 (508)
278 cd08694 C2_Dock-A C2 domains f 86.2 5 0.00011 36.6 8.6 55 297-351 53-113 (196)
279 cd08687 C2_PKN-like C2 domain 85.6 4.2 9.1E-05 32.0 6.7 64 283-354 9-72 (98)
280 PF14429 DOCK-C2: C2 domain in 85.2 3.4 7.4E-05 37.5 7.3 57 417-475 61-120 (184)
281 PF15625 CC2D2AN-C2: CC2D2A N- 83.6 6.5 0.00014 35.1 8.2 72 282-357 36-109 (168)
282 PF11618 DUF3250: Protein of u 81.0 6.2 0.00013 32.3 6.4 92 407-503 2-105 (107)
283 cd08695 C2_Dock-B C2 domains f 80.0 5.7 0.00012 36.1 6.4 57 417-475 55-113 (189)
284 cd08697 C2_Dock-D C2 domains f 77.4 25 0.00055 31.9 9.8 56 298-353 57-123 (185)
285 cd08694 C2_Dock-A C2 domains f 77.3 8.3 0.00018 35.2 6.6 59 416-474 54-114 (196)
286 cd08679 C2_DOCK180_related C2 74.5 11 0.00025 33.9 7.0 54 299-353 55-115 (178)
287 KOG1329 Phospholipase D1 [Lipi 74.0 3.9 8.4E-05 45.3 4.3 98 402-504 136-241 (887)
288 cd08696 C2_Dock-C C2 domains f 70.1 13 0.00029 33.5 6.2 56 298-353 55-118 (179)
289 KOG1452 Predicted Rho GTPase-a 70.0 9.1 0.0002 37.1 5.3 110 387-503 52-167 (442)
290 KOG2238 Uncharacterized conser 67.9 1.8 3.8E-05 47.0 0.1 91 70-161 334-428 (795)
291 smart00142 PI3K_C2 Phosphoinos 67.3 24 0.00053 28.4 6.7 52 404-455 32-91 (100)
292 KOG2419 Phosphatidylserine dec 65.4 1.2 2.6E-05 46.9 -1.6 167 261-454 279-461 (975)
293 cd08696 C2_Dock-C C2 domains f 63.8 34 0.00074 30.8 7.5 60 416-475 55-118 (179)
294 cd08697 C2_Dock-D C2 domains f 63.7 36 0.00078 30.9 7.6 61 415-475 56-123 (185)
295 cd08679 C2_DOCK180_related C2 56.1 40 0.00087 30.3 6.7 57 419-475 56-115 (178)
296 KOG0904 Phosphatidylinositol 3 49.1 73 0.0016 35.7 8.1 100 389-488 346-472 (1076)
297 PF14356 DUF4403: Domain of un 46.2 3.5E+02 0.0075 28.2 12.7 88 121-243 280-367 (427)
298 PF07162 B9-C2: Ciliary basal 45.5 1.7E+02 0.0036 26.0 8.9 78 391-474 7-102 (168)
299 PF11618 DUF3250: Protein of u 42.3 37 0.00081 27.8 3.8 59 299-359 13-78 (107)
300 KOG4092 Mitochondrial F1F0-ATP 40.6 12 0.00027 29.3 0.7 43 49-91 28-70 (108)
301 KOG0694 Serine/threonine prote 39.9 11 0.00023 40.8 0.3 91 403-501 27-119 (694)
302 PF08693 SKG6: Transmembrane a 37.1 22 0.00047 23.4 1.3 13 21-33 26-38 (40)
303 PF07162 B9-C2: Ciliary basal 31.7 3.7E+02 0.0079 23.8 12.2 95 267-369 7-117 (168)
304 KOG0694 Serine/threonine prote 30.7 24 0.00052 38.2 1.1 57 282-342 27-83 (694)
305 KOG4027 Uncharacterized conser 30.6 3.4E+02 0.0074 23.8 7.8 52 306-357 59-114 (187)
306 PF10206 WRW: Mitochondrial F1 28.2 31 0.00067 28.0 1.1 35 57-91 36-70 (104)
307 KOG1329 Phospholipase D1 [Lipi 26.1 44 0.00094 37.4 2.2 83 282-367 137-220 (887)
308 KOG4269 Rac GTPase-activating 24.6 47 0.001 37.1 2.1 74 256-336 753-828 (1112)
309 PF10409 PTEN_C2: C2 domain of 24.4 3.5E+02 0.0077 22.6 7.2 89 264-355 6-98 (134)
310 PF11431 Transport_MerF: Membr 24.2 16 0.00035 24.6 -0.9 28 5-32 14-41 (46)
311 KOG3543 Ca2+-dependent activat 23.2 4.3E+02 0.0094 28.6 8.5 98 389-491 344-442 (1218)
312 KOG0904 Phosphatidylinositol 3 21.9 2.9E+02 0.0063 31.3 7.2 71 262-335 343-421 (1076)
313 PF10409 PTEN_C2: C2 domain of 21.5 4.8E+02 0.01 21.7 7.9 86 389-477 10-98 (134)
314 PRK11677 hypothetical protein; 21.1 52 0.0011 28.1 1.3 20 5-24 2-21 (134)
315 PF04478 Mid2: Mid2 like cell 20.6 67 0.0014 28.0 1.8 7 73-79 100-106 (154)
316 PF14924 DUF4497: Protein of u 20.4 2.9E+02 0.0062 22.6 5.6 58 446-503 30-104 (112)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=8.7e-64 Score=528.46 Aligned_cols=478 Identities=26% Similarity=0.462 Sum_probs=391.8
Q ss_pred cchhhhhhhhccchhhhHHHHHhheeeeeecccccCCccccCC-CCccChhhHhhhCCCCCCceeCCCCCchHHHHHHHH
Q 038990 2 GLLSFLLGIFGFGIGIPIGFLIAFFIFVHSDATEITDPIIRPN-DHEFDTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVS 80 (505)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~ 80 (505)
|++||++|++||+++.++.+++.. +++|++..++.+.-+|.+ ++++..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 578999999999999887665554 467777554433444443 2222222222 69999999999999
Q ss_pred hhChhhHHHHHHHHHHHHHHHHHhccCcceeeEEEEeEEecCCCCCeEeEEEEEEc-CCceEEEeeeEEEe---------
Q 038990 81 DLWPYLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLTLGTLPPIIHGIKVCET-NENELILEPALRWA--------- 150 (505)
Q Consensus 81 ~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~--------- 150 (505)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. ..|.+.||++++|+
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999985 77899999999994
Q ss_pred ------CCCcEEEEEEE---ec-eEEEEEEEEEEEEEEEEEEeeecCCCCCccceEEEEecCCceEEEEeeEec-----c
Q 038990 151 ------GNPNITLALKF---FS-LQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLVG-----G 215 (505)
Q Consensus 151 ------~~~~i~l~~~~---~~-~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~~d~~~~~~g-----~ 215 (505)
-|++|.|.++. ++ +++||.|+|+.|.|++|++++ |++.+|++..+.++|++.|++||.++|+| .
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 35677887765 44 789999999999999999999 99999999999999999999999999987 4
Q ss_pred ccccchhhHHHHHHHHHHHHHhhccCCCCcccccccCCcCCCcCCeEEEEEEEeeccCccccC--CCCCCCcEEEEEECC
Q 038990 216 DMMAIPGLYQFIQETIRNQISALYLWPQPLEIPILDGSLGAIKKPVGILHVKVIRAIRLLKMD--IFGASDPYVQLSLSG 293 (505)
Q Consensus 216 ~i~~iP~l~~~i~~~i~~~l~~~~v~P~~~~~~l~~~~~~~~~~~~g~L~V~v~~a~~L~~~d--~~g~~dpyv~v~l~~ 293 (505)
||+++|||.+||+++|...+++|+++|+++++++.....+....+.|+|.|+|.+|++|...+ ..+..|||+.+...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 789999999999999999999999999999999987776567889999999999999999998 578999999999765
Q ss_pred eecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeE-EEEeccccCCC
Q 038990 294 ERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKE-LTLDLVKNTNP 372 (505)
Q Consensus 294 ~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~-~~l~l~~~~~~ 372 (505)
... .||++++++.||+|||+|++.+.. -++.|.+++||.+....|+.+|++.++|..|.....+. ...++.+...+
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~ 546 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKN 546 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeeccCcc
Confidence 543 499999999999999999999965 46889999999999999999999999999888664332 12222222111
Q ss_pred CCcc------------ccccccc----cc---ceEEEEEeeecCCCCC--CCCCCEEEEEEcCeEE-EeecccCCCCCcc
Q 038990 373 NDPQ------------DKKFERK----ES---EVGKATEYGAKDLEGK--HHNNPYAVVICRGEQK-KTKMIKKCRDPIW 430 (505)
Q Consensus 373 ~~~~------------~~~~~g~----~~---~~a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w 430 (505)
.... .....|. ++ .++.+++.++++|... ....-+++++++.+.. .|+..+.+.+|.|
T Consensus 547 vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~w 626 (1227)
T COG5038 547 VGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSW 626 (1227)
T ss_pred ceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCce
Confidence 1000 0001111 11 3468999999999763 2334448999988775 6688999999999
Q ss_pred CceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC-EEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 431 NEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG-RLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 431 ne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
|+++.-.+.+. .+..+.+.++|.. ..+.+|....+|.+++... .-..||++. +++|+|.++..|+||
T Consensus 627 n~~~~~~v~~~-~ns~~~~~~~d~~------~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi 694 (1227)
T COG5038 627 NLQYNVLVTDR-KNSSIKVVTFDVQ------SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPI 694 (1227)
T ss_pred eeecceEeccC-cceeEEEEecccc------cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEecccee
Confidence 99999999876 4567888888764 3478999999999988865 446899998 569999999999997
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-28 Score=246.56 Aligned_cols=226 Identities=29% Similarity=0.414 Sum_probs=184.3
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHVY 333 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v~ 333 (505)
.++.....|.|+|++|++|+.+|..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 3566789999999999999999977889999999999988777899999999999999999999652 35789999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCCCCcccccccccccce------------EEEEEeeecCCCCC
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFERKESEV------------GKATEYGAKDLEGK 401 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~~~------------a~v~v~~a~~L~~~ 401 (505)
|+|++++|++||++.++|..+.......+|.++........... | |+ .+|.|.+|++|...
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~----g---el~~sL~Y~p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELA----G---ELLLSLCYLPTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCccccc----c---eEEEEEEeecCCCeEEEEEEEecCCCcc
Confidence 99999999999999999999988877788888876433222111 2 33 38999999999863
Q ss_pred ---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCccCCCCCccEEEEEe
Q 038990 402 ---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGLRLRSKESLGYVDIN 472 (505)
Q Consensus 402 ---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~~d~~lG~~~i~ 472 (505)
+.+||||++++.. +++||.+.+++.||+|||+|.|.+....+.+ .+.|+|||++. ++.+++||++.+.
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~---~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDT---LGSNDLIGRCILG 390 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEccc---ccccceeeEEEec
Confidence 5889999999843 3459999999999999999999997655554 79999999995 7888899999888
Q ss_pred ccccccCCEEeEEEEeCCCCC
Q 038990 473 LHDVLHNGRLKEKYHLINSKN 493 (505)
Q Consensus 473 L~~l~~~~~~~~~~~L~~~~~ 493 (505)
... .+....+|.++.+..+
T Consensus 391 ~~~--~~~~~~hW~~m~~~p~ 409 (421)
T KOG1028|consen 391 SDS--TGEEVRHWQEMLNSPR 409 (421)
T ss_pred CCC--CchHHHHHHHHHhCcc
Confidence 765 2223345655555443
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.83 E-value=2.7e-20 Score=189.17 Aligned_cols=235 Identities=20% Similarity=0.268 Sum_probs=179.1
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
..|.|+|.+|+||++.+..|.+||||.+.++.+.+ .||.++.+++.|.|.|+|+|.+.. .-+.|.|-|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997664 699999999999999999999953 4578999999999 9999
Q ss_pred cccEEEEEECccCCCCCeeEEEEeccccCCCCCcccccccc--cccce-----EEEEEeeecCCCC--CCCCCCEEEEEE
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLVKNTNPNDPQDKKFER--KESEV-----GKATEYGAKDLEG--KHHNNPYAVVIC 412 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~g--~~~~~-----a~v~v~~a~~L~~--~~~~dpyv~v~~ 412 (505)
+.||.+.+.-.++....+.+-|..|.. .++.....++..- +.-|. ....+++++++.. ++.+|||+++..
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~ 159 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL 159 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee
Confidence 999999999999988777777887754 2222211111100 00011 1334445555432 467999999998
Q ss_pred cCeE----EEeecccCCCCCccCceEEEEeeCC-----------CC---CCeEEEEEEEccCCccCCCCCccEEEEEecc
Q 038990 413 RGEQ----KKTKMIKKCRDPIWNEEFQFDFEEA-----------PL---KEKIHIEVKSKRRGLRLRSKESLGYVDINLH 474 (505)
Q Consensus 413 ~~~~----~kT~v~~~t~nP~wne~f~f~v~~~-----------~~---~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~ 474 (505)
.+.. ++|+++++|.+|.|+|.|.|.+... +. .-.|.+++|++... ...+.++|++.+++.
T Consensus 160 ~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~--~~~~~FlGevrv~v~ 237 (800)
T KOG2059|consen 160 CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNL--VINDVFLGEVRVPVD 237 (800)
T ss_pred cccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhh--hhhhhhceeEEeehh
Confidence 6644 4999999999999999999998754 00 12678889985532 455999999999999
Q ss_pred ccccCCEEeEEEEeCCC----------CCceEEEEEEEE
Q 038990 475 DVLHNGRLKEKYHLINS----------KNGAVQVEIKWK 503 (505)
Q Consensus 475 ~l~~~~~~~~~~~L~~~----------~~G~i~l~~~~~ 503 (505)
.+........||.|... .-|.+++.+.|.
T Consensus 238 ~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 238 VLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred hhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 98866667899999632 147888888764
No 4
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.4e-19 Score=152.29 Aligned_cols=107 Identities=24% Similarity=0.341 Sum_probs=92.1
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECC----eecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEEEEc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSG----ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHVYDW 335 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~----~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~ 335 (505)
.|+|+|++|++|+..+ .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 333446899999999999999999999742 346799999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccccC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNT 370 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~ 370 (505)
|..++|++||++.++++++..++....|++|.+..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98888999999999999999998888999986643
No 5
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=4.9e-20 Score=152.77 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=89.9
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC-eecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG-ERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
.+....|.|+|+|++|+||+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.++|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 35567799999999999998 3 46799999999975 34446799999999999999999999864 3467899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLD 365 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~ 365 (505)
||+|+++++++||++.++++++..+...+.|.+
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999999999999999999998866655555654
No 6
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=2.7e-19 Score=155.42 Aligned_cols=114 Identities=27% Similarity=0.367 Sum_probs=98.4
Q ss_pred CeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE-Ec
Q 038990 260 PVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY-DW 335 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~-d~ 335 (505)
..|.|.|+|++|+||+.++ ..|.+||||++++.+.+ ..++||+++++|+||+|||+|.|.+. ..+..|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999999874 56889999999996543 34679999999999999999999997 67789999999 68
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCCCC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 374 (505)
+..+++++||++.++|+++..+.....|++|.....+.+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~~~ 144 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSLVD 144 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcccccC
Confidence 888899999999999999987777788999987665544
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.80 E-value=9.9e-19 Score=147.42 Aligned_cols=110 Identities=21% Similarity=0.359 Sum_probs=95.0
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
..|+|.+|++++.. +.+||||++++++.+++|+++++ +.||+|||+|+|.+.+. ...|.|+|||++. +++|+
T Consensus 4 L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~---~~~dd 78 (121)
T cd04016 4 LSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA---FTMDE 78 (121)
T ss_pred EEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC---CcCCc
Confidence 37899999988653 68999999999999999999876 79999999999999764 3579999999985 78899
Q ss_pred ccEEEEEecc-ccccCCEEeEEEEeCC----CCCceEEEEEEE
Q 038990 465 SLGYVDINLH-DVLHNGRLKEKYHLIN----SKNGAVQVEIKW 502 (505)
Q Consensus 465 ~lG~~~i~L~-~l~~~~~~~~~~~L~~----~~~G~i~l~~~~ 502 (505)
+||++.+++. .+..+...++||+|.+ ...|+|+|+++|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 5666666899999986 346999999986
No 8
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=3.9e-19 Score=151.18 Aligned_cols=105 Identities=31% Similarity=0.398 Sum_probs=91.8
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEe-e--cCCCCEEEEEEEEc
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTV-K--DPETQVLQLHVYDW 335 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v-~--~~~~~~L~v~v~d~ 335 (505)
.+.|.|+|++|+||+.++ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997542 3457899999999999999999987 2 33467899999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999988766777765
No 9
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=1e-18 Score=147.27 Aligned_cols=103 Identities=18% Similarity=0.344 Sum_probs=89.9
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCC-CCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK-TLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
.|.|.|+|++|++++..+ .|++||||++.+++.+ .+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999988777 7999999999998865 48888765 89999999999999653 468999999999999
Q ss_pred CCcccEEEEEECc-cCCCCCeeEEEEeccc
Q 038990 340 THDKLGMQVVPLR-SLTPNETKELTLDLVK 368 (505)
Q Consensus 340 ~d~~lG~~~i~l~-~l~~~~~~~~~l~l~~ 368 (505)
+|++||++.+++. .+..++..+.|++|..
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcC
Confidence 9999999999996 5777777788998854
No 10
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=7.1e-19 Score=151.19 Aligned_cols=99 Identities=41% Similarity=0.719 Sum_probs=90.8
Q ss_pred CCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
...|.|+|+|++|.||..+|..++|||||.+.+++++. +|+++.+++||+|||.|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999999884 888999999999999999999885 57899999999999
Q ss_pred CCCcccEEEEEECccCCCCCeeE
Q 038990 339 GTHDKLGMQVVPLRSLTPNETKE 361 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~ 361 (505)
++||++|.++|++..+.......
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CcccccceeeeccHHHHHHhhhh
Confidence 99999999999999988765544
No 11
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=8.6e-19 Score=149.87 Aligned_cols=110 Identities=35% Similarity=0.417 Sum_probs=94.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~ 331 (505)
+....+.|.|+|++|+||++++.. |.+||||++++.+.. ..+++|+++++++||.|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 445668999999999999999975 889999999996543 334699999999999999999999863 245689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.++|.++..+.....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877777778775
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.7e-18 Score=147.01 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=91.8
Q ss_pred EEEEEEeeccC---ccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 263 ILHVKVIRAIR---LLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 263 ~L~V~v~~a~~---L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
.|.|+|++|+| |+.+|..|.+||||++++++++ .||+++++++||+|||+|.|.+.++. ..|.++|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 8889999999999999998775 48999999999999999999997654 58999999998863
Q ss_pred ------CCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 340 ------THDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 340 ------~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+|++||++.++++.+..+.....|++|..
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 89999999999999999888888998864
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=1.6e-18 Score=148.66 Aligned_cols=102 Identities=30% Similarity=0.433 Sum_probs=90.4
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-----CCCCEEEEEEEEcCCC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-----PETQVLQLHVYDWEKV 338 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-----~~~~~L~v~v~d~d~~ 338 (505)
++|+|++|+||+.++..|.+||||++++++.+ ++|+++++++||+|||+|.|.+.. +..+.|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 589999999999999999999976 3567899999999999
Q ss_pred CCCcccEEEEEECccCC--CCCeeEEEEeccc
Q 038990 339 GTHDKLGMQVVPLRSLT--PNETKELTLDLVK 368 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~--~~~~~~~~l~l~~ 368 (505)
++|++||++.++++++. .+.....|++|..
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999999987 5556678888864
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=2.7e-18 Score=147.23 Aligned_cols=110 Identities=25% Similarity=0.413 Sum_probs=94.3
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCC----CCCCeEEEEEEEccCCccCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEA----PLKEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~i~V~d~~~~~~~~ 461 (505)
+|+|++|+||+.. +.+||||++++++.+++|++++++.||+|||.|.|.+... .....|.++|||++. ++
T Consensus 2 ~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---~~ 78 (126)
T cd08682 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---LG 78 (126)
T ss_pred EEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc---cC
Confidence 6899999999753 5899999999999889999999999999999999999762 124589999999984 67
Q ss_pred CCCccEEEEEeccccc--cCCEEeEEEEeCCC------CCceEEEEEE
Q 038990 462 SKESLGYVDINLHDVL--HNGRLKEKYHLINS------KNGAVQVEIK 501 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~--~~~~~~~~~~L~~~------~~G~i~l~~~ 501 (505)
++++||++.++|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 8999999999999998 45567899999742 3699999875
No 15
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=1.7e-18 Score=147.98 Aligned_cols=110 Identities=32% Similarity=0.426 Sum_probs=95.2
Q ss_pred CcCCeEEEEEEEeeccCccccCC-CCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDI-FGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....|.|.|+|++|+||+.++. .|.+||||++++.+.. ..++||+++++++||.|||+|.|.+... ....|.++
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45677999999999999998875 4789999999996543 3457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.+++.++........|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988888888876
No 16
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=2e-18 Score=147.72 Aligned_cols=111 Identities=31% Similarity=0.545 Sum_probs=97.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....|.|.|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556799999999999999999889999999999965433457999999999999999999998643 35689999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
++..+++++||++.++++++..+.....|++|.
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999999887888898864
No 17
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=4e-18 Score=144.04 Aligned_cols=103 Identities=33% Similarity=0.553 Sum_probs=94.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
+++|+|++|++|+..+..+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999998654 58999999999999999999998766789999999999989999
Q ss_pred ccEEEEEECccCCCCCeeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+||++.++++++..+.....|++|.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~ 103 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED 103 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC
Confidence 99999999999999888899998854
No 18
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=8.4e-18 Score=143.19 Aligned_cols=110 Identities=26% Similarity=0.450 Sum_probs=98.0
Q ss_pred EEEEEeeecCCCCC---------CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---------HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|.+|++|+.. +.+||||++++++..++|++++++.||+|||.|.|.+... ..+.|.|+|||++.
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~-- 79 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP-- 79 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC--
Confidence 36899999999753 4689999999999888999999999999999999999764 34689999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
. ++++||++.++++++..++..++||+|.+..+|+|+++++|
T Consensus 80 -~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 -D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 4 88999999999999998777789999998889999999998
No 19
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.76 E-value=6e-18 Score=143.62 Aligned_cols=104 Identities=32% Similarity=0.491 Sum_probs=92.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||.|||+|.|.+.....+.|.|+|||+|.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.++++++..+.....|++|..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~ 105 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP 105 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC
Confidence 9999999999999888888998754
No 20
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=5.7e-18 Score=145.30 Aligned_cols=111 Identities=28% Similarity=0.370 Sum_probs=92.9
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEE-ee--cCCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT-VK--DPETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~-v~--~~~~~~L~v~v 332 (505)
+....+.|+|+|++|+||+..+.. +.+||||++++.+....++||+++++++||.|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 889999999997655445699999999999999999994 43 22345799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCC--CeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPN--ETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~~l~l~ 367 (505)
||+|..++|++||++.++|+++... +....|+++.
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999998765 4566787764
No 21
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=4.7e-18 Score=145.39 Aligned_cols=110 Identities=35% Similarity=0.482 Sum_probs=95.8
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYD 334 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d 334 (505)
+....+.|.|+|++|+||+.++..+.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4456789999999999999999889999999999976544457999999999999999999998642 35689999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777788775
No 22
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=4.3e-18 Score=142.50 Aligned_cols=95 Identities=33% Similarity=0.493 Sum_probs=84.3
Q ss_pred EEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~d~ 337 (505)
|+|+|+|++|++|+..+.. +.+||||++++.+......+|+++++++||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965433346999999999999999999988644 35689999999999
Q ss_pred CCCCcccEEEEEECccCCC
Q 038990 338 VGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (505)
.++|++||++.++++++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.4e-17 Score=141.09 Aligned_cols=112 Identities=21% Similarity=0.387 Sum_probs=95.9
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCcc
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~l 466 (505)
.+|+|++|+||+..+.+||||++++++.. .+|++ +++.||.|||+|.|.+..+. .+.++|.|+|++. .+++++|
T Consensus 6 L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~-~~~l~v~v~d~~~---~~~d~~i 80 (126)
T cd08400 6 LQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPD-VNSFTISLSNKAK---RSKDSEI 80 (126)
T ss_pred EEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCC-cCEEEEEEEECCC---CCCCCeE
Confidence 47999999999988899999999998755 58887 46899999999999876542 2479999999874 6789999
Q ss_pred EEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEe
Q 038990 467 GYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 467 G~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
|.+.++|+++..+...+.||+|... ..|+|+|+++|.+
T Consensus 81 G~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999888778999999753 2599999999975
No 24
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=4.6e-18 Score=144.26 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=93.2
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee---cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER---IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQL 330 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v 330 (505)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|+++++++||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3556778999999999999999888899999999997655 2467999999999999999999998642 4679999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCCC-eeEEEEe
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPNE-TKELTLD 365 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~~-~~~~~l~ 365 (505)
+|||++..+++++||++.++|+++.... ....|++
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996553 3445554
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.75 E-value=2.4e-17 Score=139.26 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=98.4
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|++|++|+.. +.+||||++++++..++|+++++|.||.|||.|.|.+.++ .++.|.++|||++. .+++++
T Consensus 3 ~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~---~~~~~~ 78 (116)
T cd08376 3 TIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT---GKKDEF 78 (116)
T ss_pred EEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC---CCCCCe
Confidence 6899999999864 5789999999998889999999999999999999999765 35689999999984 678999
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
||++.++|+++..+.....||+|.+. +|+|++.++|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999988888999999865 79999999874
No 26
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=1.5e-17 Score=141.64 Aligned_cols=102 Identities=34% Similarity=0.554 Sum_probs=92.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|++|+..|..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.+. .+.|.++|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 78999999999999988999999999998643 36899999999999999999998764 5789999999999999999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.++++++..+...+.|++|..
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLED 103 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCC
Confidence 9999999999999888899998853
No 27
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=1.7e-17 Score=143.63 Aligned_cols=97 Identities=31% Similarity=0.494 Sum_probs=89.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
.....|.|+|+|++|++|+..|..|.+||||+++++... ++|++++++.||.|||+|.|.+.+...+.|.++|||++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 345789999999999999999988999999999998654 58999999999999999999998777789999999999
Q ss_pred CCCCCcccEEEEEECccCCC
Q 038990 337 KVGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~ 356 (505)
..++|++||++.+++.++..
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCCCeeEEEEEEHHHhcc
Confidence 99999999999999999886
No 28
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.74 E-value=4.4e-17 Score=138.71 Aligned_cols=111 Identities=20% Similarity=0.330 Sum_probs=97.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcC-eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRG-EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
+|+|.+|++|+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.+.|+|||++. .++++
T Consensus 3 ~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~---~~~~~ 77 (121)
T cd04042 3 DIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR---GLTDD 77 (121)
T ss_pred EEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC---CCCCc
Confidence 6899999999753 5899999999987 456999999999999999999998764 4689999999984 67899
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCCC----CceEEEEEEEEe
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINSK----NGAVQVEIKWKA 504 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~~~~ 504 (505)
+||++.++++++..+...+.|++|.+.+ .|+|++++++.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999999999887788999997543 699999999987
No 29
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=1.8e-17 Score=141.62 Aligned_cols=104 Identities=31% Similarity=0.512 Sum_probs=92.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|+|+|++|++|+.++..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999988899999999998654 58999999999999999999997766678999999999999999
Q ss_pred ccEEEEEECccCCCCCeeEEEEecccc
Q 038990 343 KLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+||++.++++++..+.....|++|...
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCC
Confidence 999999999999877666778887654
No 30
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.2e-17 Score=138.49 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=82.5
Q ss_pred EEEEEEEeeccCccccCCC----CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 262 GILHVKVIRAIRLLKMDIF----GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||+++++++||+|||+|.|.+.+.. ...|.++|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997654 58999999999999999999986543 457999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCe
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
..++|++||++.++|+++..+..
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhCC
Confidence 99999999999999999887643
No 31
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.3e-17 Score=142.71 Aligned_cols=110 Identities=25% Similarity=0.317 Sum_probs=91.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCC-CCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 455678999999999999999875 899999999997653 3356999999999999999999998542 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCC---eeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNE---TKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~---~~~~~l~l 366 (505)
|||++..+++++||++.|+|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999986543 33455554
No 32
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=3.2e-17 Score=139.17 Aligned_cols=105 Identities=18% Similarity=0.355 Sum_probs=91.2
Q ss_pred EEEEeeecC---CCC---CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC--
Q 038990 389 KATEYGAKD---LEG---KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL-- 460 (505)
Q Consensus 389 ~v~v~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~-- 460 (505)
+|+|++|++ |+. .+.+||||.+.+++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++. .
T Consensus 3 ~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~---~~~ 77 (126)
T cd08379 3 EVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQ---SHW 77 (126)
T ss_pred EEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCC---ccc
Confidence 689999999 654 36899999999999999999999999999999999999775 3589999999874 3
Q ss_pred ----CCCCccEEEEEeccccccCCEEeEEEEeCCC------CCceEEE
Q 038990 461 ----RSKESLGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQV 498 (505)
Q Consensus 461 ----~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l 498 (505)
.+|++||++.++|+++..+....+||+|.+. +.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 3899999999999999998888999999842 3677764
No 33
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=2.3e-17 Score=139.89 Aligned_cols=110 Identities=25% Similarity=0.462 Sum_probs=94.5
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.+|+|.+|++|+.. +.+||||++++++..++|+++++ +.||+|||.|.|.+..+ ..+.|.|+|||++. .+ +
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~~-~ 77 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK---RK-P 77 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---CC-C
Confidence 37899999999763 58999999999998889998765 78999999999999875 34689999999874 33 8
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCCC--CceEEEEEEE
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINSK--NGAVQVEIKW 502 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~~--~G~i~l~~~~ 502 (505)
++||++.++++++..+....+||+|...+ .|+|+|+++|
T Consensus 78 ~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 78 DLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred cceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999999998776678999998653 7999999986
No 34
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=2.7e-17 Score=139.78 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=90.3
Q ss_pred cccccCCcCCCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-CCC
Q 038990 247 IPILDGSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-PET 325 (505)
Q Consensus 247 ~~l~~~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~ 325 (505)
-|++++.........|.|+|+|++|++|+. +..+.+||||++++++. +++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 366665544567789999999999999984 66788999999999866 3699999999999999999997533 356
Q ss_pred CEEEEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 326 QVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 326 ~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+.|+|+|||++..++|++||++.+++.....+
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 79999999999999999999999999976643
No 35
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=2.5e-17 Score=141.14 Aligned_cols=111 Identities=31% Similarity=0.494 Sum_probs=95.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec---CCCCEEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD---PETQVLQLHVY 333 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~~L~v~v~ 333 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996543345799999999999999999997532 23567999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
|++..+++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999888888888764
No 36
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=4.3e-17 Score=138.32 Aligned_cols=109 Identities=20% Similarity=0.372 Sum_probs=96.0
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... ..+.|.|+|||++. . +
T Consensus 3 ~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---~-~ 77 (119)
T cd04036 3 TVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---V-M 77 (119)
T ss_pred EEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC---C-C
Confidence 6899999999764 5899999999964 456999999999999999999999765 34579999999984 5 8
Q ss_pred CCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEE
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
+++||++.++++++..+.....||+|...++|++++++.+
T Consensus 78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred CcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 8999999999999998888899999998889999999875
No 37
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=4.3e-17 Score=143.34 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=94.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
+|+|.+|++|+.. +.+||||+++++++.++|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. .++++
T Consensus 3 ~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~---~~~dd 78 (150)
T cd04019 3 RVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG---PNKDE 78 (150)
T ss_pred EEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC---CCCCC
Confidence 6899999999653 58999999999998889999977 69999999999999765 34689999999874 56789
Q ss_pred ccEEEEEeccccccC----CEEeEEEEeCCCC-----------CceEEEEEEEE
Q 038990 465 SLGYVDINLHDVLHN----GRLKEKYHLINSK-----------NGAVQVEIKWK 503 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~~~~~ 503 (505)
+||++.++|+++..+ ...++||+|.+.+ +|+|+|++.|.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 999999999998753 3468999998643 49999999875
No 38
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.73 E-value=3.6e-16 Score=167.88 Aligned_cols=278 Identities=22% Similarity=0.356 Sum_probs=198.8
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCC-------ccc---cccc----CCcCCCcCCeEEEEEEEeeccCccccCCCCCCCc
Q 038990 220 IPGLYQFIQETIRNQISALYLWPQP-------LEI---PILD----GSLGAIKKPVGILHVKVIRAIRLLKMDIFGASDP 285 (505)
Q Consensus 220 iP~l~~~i~~~i~~~l~~~~v~P~~-------~~~---~l~~----~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dp 285 (505)
++...+-+.+.|.......++.|.+ ++. |+-. .+...+..+.|.++|+|..|.+|......+.+||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4445555567777777777887776 111 3321 1222467899999999999999997777899999
Q ss_pred EEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCee-----
Q 038990 286 YVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK----- 360 (505)
Q Consensus 286 yv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~----- 360 (505)
|+++.+++.. ++||-....++||.||+..+..+..+ .+.+.++++|++..+.|..+|++.++++++......
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998744 47898889999999999999999764 577999999999999999999999998876541100
Q ss_pred ----------------------EEEEecccc---CCC----------------------CCc--------cc--------
Q 038990 361 ----------------------ELTLDLVKN---TNP----------------------NDP--------QD-------- 377 (505)
Q Consensus 361 ----------------------~~~l~l~~~---~~~----------------------~~~--------~~-------- 377 (505)
.+.+.+.+. .+. .+. ..
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 011111000 000 000 00
Q ss_pred ----c----c-----------ccc--------------------------------------------------------
Q 038990 378 ----K----K-----------FER-------------------------------------------------------- 382 (505)
Q Consensus 378 ----~----~-----------~~g-------------------------------------------------------- 382 (505)
. + ..|
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 0 000
Q ss_pred -------c--------------------------------cc--------------------ce------EEEEEeeecC
Q 038990 383 -------K--------------------------------ES--------------------EV------GKATEYGAKD 397 (505)
Q Consensus 383 -------~--------------------------------~~--------------------~~------a~v~v~~a~~ 397 (505)
+ .+ |+ .+|.+..|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 00 00 1577778888
Q ss_pred CCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEec
Q 038990 398 LEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINL 473 (505)
Q Consensus 398 L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L 473 (505)
|+.. +.+||||++.+++++ ++|+++++|+||+|||.|...+.+. ..+.+.+.|+|++. ..+++.||.+.++|
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~---~~knd~lg~~~idL 1127 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS---GEKNDLLGTAEIDL 1127 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeeccc---CCCccccccccccH
Confidence 8763 569999999999884 7999999999999999999999876 45789999999985 56889999999999
Q ss_pred cccccCCEEeEEEEeCCCC----CceEEEEEEEEe
Q 038990 474 HDVLHNGRLKEKYHLINSK----NGAVQVEIKWKA 504 (505)
Q Consensus 474 ~~l~~~~~~~~~~~L~~~~----~G~i~l~~~~~~ 504 (505)
+.+..+.......+|.+.. .|.++....+++
T Consensus 1128 ~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1128 SKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred hhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 9998877655555555433 566666665553
No 39
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=1.5e-17 Score=141.05 Aligned_cols=103 Identities=26% Similarity=0.427 Sum_probs=88.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998743 4777764 5799999999999998766788999999998765
Q ss_pred CcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 341 HDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
|++||++.++++++..+.....|++|..
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 104 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL 104 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc
Confidence 9999999999999877666667777653
No 40
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=2e-17 Score=141.10 Aligned_cols=111 Identities=30% Similarity=0.355 Sum_probs=96.3
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEE-eec--CCCCEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLT-VKD--PETQVLQLHV 332 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~-v~~--~~~~~L~v~v 332 (505)
.+....+.|.|+|++|+||++.+..|.+||||++.+.+.+..+++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355677899999999999999998889999999988766555679999887 999999999998 532 2467899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||++..+++++||++.++|+++..+.....|++|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999999999888888888774
No 41
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=3.6e-17 Score=138.88 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=94.6
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEE
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGY 468 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~ 468 (505)
+|+|++|++|+.. .+||||++++++...+|++++++.||+|||+|.|.+.+. ....|.++|||++. . ++++||+
T Consensus 3 ~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~---~-~~~~lG~ 76 (121)
T cd08378 3 YVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK---A-KDDFLGG 76 (121)
T ss_pred EEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC---C-cCceeee
Confidence 6899999999887 899999999998888999999999999999999998764 34689999999984 3 7899999
Q ss_pred EEEeccccccCC-----EEeEEEEeCCCC----CceEEEEEEEE
Q 038990 469 VDINLHDVLHNG-----RLKEKYHLINSK----NGAVQVEIKWK 503 (505)
Q Consensus 469 ~~i~L~~l~~~~-----~~~~~~~L~~~~----~G~i~l~~~~~ 503 (505)
+.++|+++..+. ...+||+|.+.+ +|+|+|++.|-
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999987632 346999998754 69999999873
No 42
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=4.1e-17 Score=140.12 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=95.6
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCC--CCeEEEEEEEccCCccCC-C
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL--KEKIHIEVKSKRRGLRLR-S 462 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~~~~~~~-~ 462 (505)
+|+|++|++|.. .+.+||||++++++..++|++++++.||+|||.|.|.+..+.. ...|.|+|||++. +. +
T Consensus 3 ~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~---~~~~ 79 (127)
T cd04022 3 VVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR---SGRR 79 (127)
T ss_pred EEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC---CcCC
Confidence 689999999975 3579999999999999999999999999999999999976422 2479999999874 54 7
Q ss_pred CCccEEEEEecccccc-CCEEeEEEEeCCC-----CCceEEEEEEEE
Q 038990 463 KESLGYVDINLHDVLH-NGRLKEKYHLINS-----KNGAVQVEIKWK 503 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~-----~~G~i~l~~~~~ 503 (505)
+++||++.++++++.. +....+||+|... .+|+|+|++.+.
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 8999999999999984 5566899999854 389999999875
No 43
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=3.7e-17 Score=135.45 Aligned_cols=100 Identities=31% Similarity=0.457 Sum_probs=88.0
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|.|+|++|++|+..+..+.+||||++++++.. ++|++++++.||.|||+|.|.+.++..+.|.++|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999999888999999999999743 689999999999999999999988777899999999975 88
Q ss_pred ccEEEEEECccCCCCC--eeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNE--TKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~--~~~~~l~l~~ 368 (505)
+||++.+++.++.... ....|++|..
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999999999988654 4567887754
No 44
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=4.5e-17 Score=142.43 Aligned_cols=107 Identities=30% Similarity=0.386 Sum_probs=89.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEee---------------cCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVK---------------DPET 325 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~---------------~~~~ 325 (505)
.|.|+|++|+||+. ..|.+||||++++.+. +...++|+++++|+||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999998 4689999999999763 223468999999999999999999985 1123
Q ss_pred CEEEEEEEEcCCCCCCcccEEEEEECccCCCC-CeeEEEEeccccCC
Q 038990 326 QVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN-ETKELTLDLVKNTN 371 (505)
Q Consensus 326 ~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~ 371 (505)
..|.++|||++..++|++||++.+++.++..+ .....|++|....+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 57999999999888999999999999999987 56677888865433
No 45
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.72 E-value=1.2e-16 Score=138.36 Aligned_cols=111 Identities=23% Similarity=0.396 Sum_probs=97.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+.+. ..+.|.|+|||++. ++.|+
T Consensus 17 L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---~~~d~ 92 (136)
T cd08375 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---FSPDD 92 (136)
T ss_pred EEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---CCCCC
Confidence 38999999999753 6899999999998889999999999999999999999765 34689999999984 67889
Q ss_pred ccEEEEEecccccc-----CCEEeEEEEeCCCCCceEEEEEEE
Q 038990 465 SLGYVDINLHDVLH-----NGRLKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 465 ~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~~ 502 (505)
+||++.++|.++.. +....+|.++.+...|+|+|++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 99999999999987 345678888887778999999987
No 46
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=2.7e-17 Score=140.47 Aligned_cols=110 Identities=31% Similarity=0.421 Sum_probs=93.5
Q ss_pred CcCCeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556789999999999999988 67899999999986432 2357899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.++++++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999877666777764
No 47
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=9.9e-17 Score=138.02 Aligned_cols=111 Identities=26% Similarity=0.446 Sum_probs=95.8
Q ss_pred EEEEEeeecCCCC-----CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 388 GKATEYGAKDLEG-----KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 388 a~v~v~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
.+|.|++|++|+. .+.+||||++++++..++|++++++.||+|||+|.|.+..+ ..+.|.|+|||++. .+.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---~~~ 78 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---FAG 78 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC---CCC
Confidence 3689999999964 35789999999998889999999999999999999999873 34689999999984 668
Q ss_pred CCccEEEEEecccccc---CCEEeEEEEeCCC-------CCceEEEEEEE
Q 038990 463 KESLGYVDINLHDVLH---NGRLKEKYHLINS-------KNGAVQVEIKW 502 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~-------~~G~i~l~~~~ 502 (505)
+++||++.++++++.. .....+||+|.+. .+|+|+|++.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 8999999999999983 3345899999865 38999999998
No 48
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=2.2e-17 Score=139.61 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=88.4
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999998 7899999999997643 23468999999999999999999985422 357899999998
Q ss_pred CCC-CCcccEEEEEECccCCCCCeeEEEEec
Q 038990 337 KVG-THDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 337 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
... ++++||++.+++.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 775 478999999999999877666666643
No 49
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=4.8e-17 Score=139.71 Aligned_cols=103 Identities=36% Similarity=0.531 Sum_probs=89.7
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC---CCEEEEEEEEcCCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE---TQVLQLHVYDWEKVG 339 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~---~~~L~v~v~d~d~~~ 339 (505)
.|+|+|++|++|+..+..|.+||||++++++++ ++|++++++.||.|||+|.|.+.++. ...|.++|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999999765 58999999999999999999997543 367999999999876
Q ss_pred -CCcccEEEEEECccCC-CCCeeEEEEeccc
Q 038990 340 -THDKLGMQVVPLRSLT-PNETKELTLDLVK 368 (505)
Q Consensus 340 -~d~~lG~~~i~l~~l~-~~~~~~~~l~l~~ 368 (505)
++++||++.++++++. .+.....|++|.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~ 108 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEK 108 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeee
Confidence 8999999999999988 4556677888764
No 50
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.71 E-value=1.4e-16 Score=135.30 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=94.0
Q ss_pred EEEEeeecCCCCC----CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 389 KATEYGAKDLEGK----HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 389 ~v~v~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.|.|.+|+||+.. +.+||||++++++. ..+|+++++|.||+|||+|.|.+.+. ...|.+.|||++. .+++
T Consensus 3 ~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~---~~~~ 77 (121)
T cd08401 3 KIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV---LRRD 77 (121)
T ss_pred EEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC---CCCC
Confidence 5889999999763 47899999999765 46999999999999999999999754 3589999999984 7789
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEE
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
++||.+.++++++..+...+.||+|... .+|+|+|++++
T Consensus 78 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 78 SVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred ceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 9999999999999887777899999742 27999999864
No 51
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=5.4e-17 Score=139.44 Aligned_cols=110 Identities=27% Similarity=0.331 Sum_probs=94.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 455678999999999999999988999999999996532 3457999999999999999999998532 357899999
Q ss_pred EEcCCC--CCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKV--GTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~--~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||++.. +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999887777778765
No 52
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=3.4e-17 Score=135.80 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=83.5
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcC----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCC
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRG----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~ 462 (505)
.+|+|++|++|+..+.+||||++++.. .+++|+++++|.||+|||+|.|.+....+. ..|.++|||++. +++
T Consensus 16 L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr---fs~ 92 (118)
T cd08677 16 LHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR---FSR 92 (118)
T ss_pred EEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC---CCC
Confidence 489999999999777899999999964 356999999999999999999999765443 379999999994 899
Q ss_pred CCccEEEEEeccccccCCEEeEEEEe
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
+++||++.++++++.......+|-+|
T Consensus 93 ~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 93 HSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CceEEEEEEccccccCCccccchhcC
Confidence 99999999999987555555677654
No 53
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=7.5e-17 Score=138.76 Aligned_cols=104 Identities=31% Similarity=0.452 Sum_probs=91.2
Q ss_pred EEEEEEEeeccCccccCC--CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 262 GILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
|.|+|+|++|++|+..+. .+.+||||++++++.. .+|++++++.||.|||+|.|.+.+...+.|.++|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999988 7899999999997654 58999999999999999999998766789999999999988
Q ss_pred CCcccEEEEEECccCCC---CCeeEEEEeccc
Q 038990 340 THDKLGMQVVPLRSLTP---NETKELTLDLVK 368 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~---~~~~~~~l~l~~ 368 (505)
++++||++.+++.++.. ......|++|..
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~ 109 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKS 109 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccC
Confidence 99999999999999873 233467777754
No 54
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=7.4e-17 Score=137.79 Aligned_cols=111 Identities=27% Similarity=0.372 Sum_probs=95.8
Q ss_pred CCcCCeEEEEEEEeeccCccccC-CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
.++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 35567789999999999999998 678899999999865433346899999999999999999998643 245799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||++..+++++||++.++|+++........|++|
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 9999988999999999999999988888888876
No 55
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=2.3e-16 Score=135.25 Aligned_cols=111 Identities=19% Similarity=0.372 Sum_probs=96.0
Q ss_pred EEEEeeecCCCC-CCCCCCEEEEEEcC--eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEG-KHHNNPYAVVICRG--EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~-~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|+|++|++|+. .+.+||||+++++. ..++|++++++.||+|||.|.|.+... .+.|.|+|||++. .+.+++
T Consensus 2 ~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~---~~~~~~ 76 (126)
T cd08678 2 LVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN--SKELLFEVYDNGK---KSDSKF 76 (126)
T ss_pred EEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC--CCEEEEEEEECCC---CCCCce
Confidence 588999999975 35899999999974 457999999999999999999999542 4689999999985 667999
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEe
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
||++.++++++.......+||+|... ..|+|+++++|.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999999987777899999743 3899999999975
No 56
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=6.6e-17 Score=142.18 Aligned_cols=104 Identities=25% Similarity=0.353 Sum_probs=90.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCC-CCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMK-TLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ ++||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999754 57888766 69999999999999776667899999999988899
Q ss_pred cccEEEEEECccCCCC----CeeEEEEecccc
Q 038990 342 DKLGMQVVPLRSLTPN----ETKELTLDLVKN 369 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~----~~~~~~l~l~~~ 369 (505)
++||++.++++++..+ .....|++|...
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence 9999999999998753 345688888654
No 57
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.71 E-value=9.1e-17 Score=136.40 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=89.6
Q ss_pred EEEEEeeccCccccC-CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 264 LHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 264 L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
|.|+|++|+||+..+ ..|.+||||++++++.. .++|+++++|+||.|||+|.|.+.+. ...|.+.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997553 36899999999999999999999653 478999999999999999
Q ss_pred ccEEEEEECccCCCCCeeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+||++.++++++..+...+.|++|.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~ 104 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQP 104 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEc
Confidence 99999999999998877888888864
No 58
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.4e-17 Score=138.60 Aligned_cols=109 Identities=29% Similarity=0.427 Sum_probs=89.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~ 331 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.++
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 445668999999999999999988899999999997532 2346899999999999999999986442 35789999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++..+++++||++.+++++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998999999999999998332 233456665
No 59
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=2.7e-16 Score=135.01 Aligned_cols=111 Identities=26% Similarity=0.512 Sum_probs=97.3
Q ss_pred EeeecCCCC-CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC-CCCeEEEEEEEccCCccCCCCCccEEE
Q 038990 392 EYGAKDLEG-KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP-LKEKIHIEVKSKRRGLRLRSKESLGYV 469 (505)
Q Consensus 392 v~~a~~L~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~i~V~d~~~~~~~~~d~~lG~~ 469 (505)
|.+|++|+. .+.+||||++++++.+++|++++++.||+|||.|.|.+..+. ..+.+.++|||++. .+++++||++
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCCCceEEEE
Confidence 678999987 468999999999998899999999999999999999997642 34689999999984 6778999999
Q ss_pred EEeccccccCCEEeEEEEeCCC----CCceEEEEEEEEeC
Q 038990 470 DINLHDVLHNGRLKEKYHLINS----KNGAVQVEIKWKAI 505 (505)
Q Consensus 470 ~i~L~~l~~~~~~~~~~~L~~~----~~G~i~l~~~~~~~ 505 (505)
.++++++..+.....|++|.+. ..|+|+++++|.|.
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999999988888999999743 26999999999884
No 60
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.70 E-value=9.9e-17 Score=136.57 Aligned_cols=103 Identities=31% Similarity=0.463 Sum_probs=91.2
Q ss_pred EEEEEEEeeccCccccCC------CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 262 GILHVKVIRAIRLLKMDI------FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
|+|+|+|++|+||+..+. .|.+||||++++++.. ++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~---~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT---FKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEe---EEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998874 3689999999998743 6899999999999999999999776678999999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
+.. +|++||++.++++++..+.....|++|..
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 109 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED 109 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence 987 89999999999999988777778888754
No 61
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=7.2e-17 Score=134.83 Aligned_cols=101 Identities=29% Similarity=0.433 Sum_probs=86.5
Q ss_pred EEEEEeeccCccccCC-CCCCCcEEEEEECCeecceeeeeeeCCCCCCeE-ceeEEEEeecC--CCCEEEEEEEEcCCCC
Q 038990 264 LHVKVIRAIRLLKMDI-FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEW-NEDFKLTVKDP--ETQVLQLHVYDWEKVG 339 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~w-ne~f~~~v~~~--~~~~L~v~v~d~d~~~ 339 (505)
|.|+|++|++|+.++. .|.+||||++++++. .+||+++++++||.| ||+|.|.+... ..+.|.++|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5899999999999884 688999999999873 368999999999999 99999999653 2468999999999999
Q ss_pred CCcccEEEEEECccCCCC---CeeEEEEecc
Q 038990 340 THDKLGMQVVPLRSLTPN---ETKELTLDLV 367 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~---~~~~~~l~l~ 367 (505)
++++||++.++++++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3345677664
No 62
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.5e-16 Score=133.09 Aligned_cols=99 Identities=25% Similarity=0.464 Sum_probs=87.3
Q ss_pred CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccC-
Q 038990 402 HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN- 479 (505)
Q Consensus 402 ~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~- 479 (505)
|.+||||+++++++ .++|++++++.||+|||.|.|.+.+. ..+.|.|+|+|++. . ++++||++.++|+++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD---R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC---C-CCCeEEEEEecHHHHHhhh
Confidence 67999999999875 46999999999999999999999875 34679999999984 5 899999999999999764
Q ss_pred CEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 480 GRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 480 ~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
....+||+|.+..+|+|+++++|+|+
T Consensus 86 ~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCCCCCCEEEEEEEEecC
Confidence 44589999998889999999999996
No 63
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=2.3e-16 Score=130.60 Aligned_cols=97 Identities=26% Similarity=0.437 Sum_probs=85.5
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|+|++|++|+.. +.+||||+++++++.++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|++ . +++
T Consensus 3 ~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~----~--~~~ 75 (105)
T cd04050 3 FVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDK----T--GKS 75 (105)
T ss_pred EEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECC----C--CCc
Confidence 6899999999753 5899999999999889999999999999999999999875 3468999999986 2 789
Q ss_pred cEEEEEeccccccCC--EEeEEEEeCCCC
Q 038990 466 LGYVDINLHDVLHNG--RLKEKYHLINSK 492 (505)
Q Consensus 466 lG~~~i~L~~l~~~~--~~~~~~~L~~~~ 492 (505)
||++.++|.++..+. ..++||+|.+++
T Consensus 76 iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 76 LGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred cEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 999999999998754 678999998653
No 64
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=1.2e-16 Score=140.06 Aligned_cols=106 Identities=37% Similarity=0.565 Sum_probs=90.0
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeec--------------------------ceeeeeeeCCCCC
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI--------------------------PAKKTSVKMKTLN 309 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~~T~~~~~t~n 309 (505)
....+.+.|.|+|++|+||..+|..|.+||||++++.+... ..++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 35668999999999999999999999999999999864311 2368999999999
Q ss_pred CeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 310 PEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 310 P~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. ...+.|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999997766789999999997 8999999999999983 345666654
No 65
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.69 E-value=3.9e-16 Score=133.73 Aligned_cols=100 Identities=26% Similarity=0.403 Sum_probs=86.7
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
|.++|+|+|++|++|+..+..|.+||||+++++++. .+|++++++.||+|||+|.|.+.+. ...|.++|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5899999999999999999988654 67899999999876
Q ss_pred CCcccEEEEEECccCCCCCeeEEEE
Q 038990 340 THDKLGMQVVPLRSLTPNETKELTL 364 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~l 364 (505)
+|++||++.+++.++.....+++++
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l 100 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPL 100 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEc
Confidence 5899999999999876555554444
No 66
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.2e-16 Score=142.58 Aligned_cols=109 Identities=30% Similarity=0.377 Sum_probs=92.7
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEEE
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLHV 332 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~v 332 (505)
..+.|.|.|+|++|+||+..+..+.+||||++++.+. ...++||++++++.||.|||+|.|.+... ....|.++|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 3478999999999999999998899999999998542 23457999999999999999999985322 346799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||++..++|++||++.++++++........|+++
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999877666777665
No 67
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=3.1e-16 Score=131.32 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=86.4
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEE
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGY 468 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~ 468 (505)
.|+|.+|++|+..+..||||++.+++.+.+|+++++ .||.|||.|.|.+.+. +..|.|+|||++ ..+|++||+
T Consensus 5 ~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd----~~~DD~lG~ 77 (127)
T cd08394 5 CVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKG----LIWDTLVGT 77 (127)
T ss_pred EEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCC----CcCCCceEE
Confidence 689999999998888899999999998889999988 5999999999999764 346999999987 458999999
Q ss_pred EEEeccccccCCE--EeEEEEeCC---CCCceE
Q 038990 469 VDINLHDVLHNGR--LKEKYHLIN---SKNGAV 496 (505)
Q Consensus 469 ~~i~L~~l~~~~~--~~~~~~L~~---~~~G~i 496 (505)
+.++|+++..+.. ..+||+|.. .++|++
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999997653 379999973 235554
No 68
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=6.7e-17 Score=139.57 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=83.8
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+..|.+||||++++.+. +..++||+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44566899999999999999998899999999999653 3335689999999999999999999864 3467899999
Q ss_pred EEcCCCCCCcccEEEEEECcc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRS 353 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~ 353 (505)
||+|..+++++||++.++...
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC
Confidence 999999999999999997764
No 69
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.68 E-value=2.7e-16 Score=134.79 Aligned_cols=101 Identities=30% Similarity=0.453 Sum_probs=87.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|.|+|++|+||+. ..|.+||||+++++... ..++|++++++.||.|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999988 56899999999997422 24699999999999999999999853 46789999999999999999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.++++++........|++|..
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~ 101 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQG 101 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecC
Confidence 9999999999998877777887753
No 70
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=2.9e-16 Score=133.13 Aligned_cols=104 Identities=29% Similarity=0.485 Sum_probs=90.7
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
|.|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999997643 36889999999999999999988654 47899999999999999
Q ss_pred cccEEEEEECccCCCCCeeEEEEecccc
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
++||++.+++.++..+ ..+.|+.+...
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 9999999999999877 55666666554
No 71
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=4.4e-16 Score=138.35 Aligned_cols=105 Identities=30% Similarity=0.457 Sum_probs=91.3
Q ss_pred eEEEEEEEeeccCccccC------------------------------CCCCCCcEEEEEECCeecceeeeeeeCCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMD------------------------------IFGASDPYVQLSLSGERIPAKKTSVKMKTLNP 310 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP 310 (505)
.|.|.|+|++|++|+.+| ..|.+||||++++++.+. .||++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999987653 589999999999
Q ss_pred eEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 311 EWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 311 ~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
.|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+...+.|++|...
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 140 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS 140 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence 9999999998654 468999999999774 68999999999999988888899988653
No 72
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=1e-16 Score=138.35 Aligned_cols=109 Identities=20% Similarity=0.289 Sum_probs=88.5
Q ss_pred CcCCeEEEEEEEeeccCccccCC--CCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQL 330 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v 330 (505)
+....+.|.|+|++|+||+..|. .+.+||||++++.++ +..++||+++++++||+|||+|.|.+... ....|.+
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44567899999999999999983 345899999999764 34467999999999999999999998642 3567999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
+|||+|..+++++||++.+++.. .++....|.+++
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 99999999999999999999975 333344454443
No 73
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=3.7e-16 Score=134.07 Aligned_cols=105 Identities=32% Similarity=0.458 Sum_probs=89.9
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998754333469999999999999999999997755678999999999888999
Q ss_pred ccEEEEEECccCCC---CCeeEEEEecc
Q 038990 343 KLGMQVVPLRSLTP---NETKELTLDLV 367 (505)
Q Consensus 343 ~lG~~~i~l~~l~~---~~~~~~~l~l~ 367 (505)
+||++.++++++.. +..+..|+++.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 99999999987543 33567788774
No 74
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=3.4e-16 Score=136.50 Aligned_cols=93 Identities=38% Similarity=0.660 Sum_probs=84.7
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
.|.|+|+|++|+||+..+. +.+||||+++++++. .+|++++++.||.|||+|.|.+.++ ...+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 889999999998754 5899999999999999999999776 6789999999999999
Q ss_pred CcccEEEEEECccCCCCC
Q 038990 341 HDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~ 358 (505)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987653
No 75
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.67 E-value=6.9e-16 Score=132.10 Aligned_cols=103 Identities=21% Similarity=0.363 Sum_probs=87.9
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
...|+|+|++|+||+.+ +.+||||++++++.+. .+|+++ ++.||.|||+|.|.+..+..+.+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~--~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKV--ARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeE--EEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999875 4689999999986442 578874 68999999999998765555689999999999999
Q ss_pred CcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 341 HDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|++||++.+++.++..+...+.|++|.+.
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~ 105 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSA 105 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccC
Confidence 99999999999999988888889988654
No 76
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.67 E-value=1.3e-15 Score=131.65 Aligned_cols=109 Identities=22% Similarity=0.365 Sum_probs=94.0
Q ss_pred EEEEEeeecCCCCC-------------CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEGK-------------HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
++|+|++|++|... +.+||||+++++++. .+|++++++.||.|||+|+|.+.+ .+.+.|.|++
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~v~d 82 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELTVFH 82 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEEEEe
Confidence 47999999999642 368999999998866 599999999999999999999964 3689999999
Q ss_pred ccCCccCCCCCccEEEEEecccccc--CCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLH--NGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++. .+.++++|++.++|+++.. +...+.||+|. ++|+|+|+++|+.
T Consensus 83 ~~~---~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 83 DAA---IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred CCC---CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 874 6778999999999999987 45668999997 5799999999974
No 77
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=7.5e-16 Score=129.61 Aligned_cols=100 Identities=24% Similarity=0.241 Sum_probs=83.9
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEcC-------eEEEeecccCCCCCccCceEEEEeeCCC--CCCeEEEEEEEccCC
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICRG-------EQKKTKMIKKCRDPIWNEEFQFDFEEAP--LKEKIHIEVKSKRRG 457 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~ 457 (505)
+|+|.+|++|+.. |.+||||++++.+ ++++|+++.++.||+|||+|+|.+.+.. ....|.+.|+|++.
T Consensus 3 ~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~- 81 (120)
T cd08395 3 TVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF- 81 (120)
T ss_pred EEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc-
Confidence 6899999999764 6899999999842 2358999999999999999999997532 22369999999873
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
.+.+++||++.++|+++..++....|++|...
T Consensus 82 --~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 82 --ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred --cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 56789999999999999998888999999653
No 78
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.9e-16 Score=132.62 Aligned_cols=93 Identities=30% Similarity=0.513 Sum_probs=83.0
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||.|||+|.|.+..+..+.|.++|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999889999999999987653 357788889999999999999987777789999999999999999
Q ss_pred ccEEEEEECccCCC
Q 038990 343 KLGMQVVPLRSLTP 356 (505)
Q Consensus 343 ~lG~~~i~l~~l~~ 356 (505)
+||++.+++++..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999987653
No 79
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.67 E-value=5.6e-16 Score=131.76 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=88.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|.|+|++|++|++++..|.+||||++.+++... .+|+++++++||.|||+|.|.+.. ..+.|.++|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI--IRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEee--eeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 789999999999999999999999999986542 589999999999999999999854 34789999999999999999
Q ss_pred cEEEEEECccCCCC-CeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPN-ETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~-~~~~~~l~l~~ 368 (505)
||++.++++++..+ ...+.|++|..
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~ 104 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTE 104 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECee
Confidence 99999999888754 23567888753
No 80
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=1.1e-16 Score=138.72 Aligned_cols=110 Identities=34% Similarity=0.465 Sum_probs=91.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+..+..|.+||||++++.+. +...++|+++++++||.|||+|.|.+... ....|.++|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 45567999999999999999998899999999999653 23346999999999999999999998643 356899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||+|..+++++||++.+++.. .++....|+++.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999998899999999999986 3334455666544
No 81
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=6.9e-16 Score=135.18 Aligned_cols=93 Identities=33% Similarity=0.594 Sum_probs=81.5
Q ss_pred EEEEEEeeccCccccCCCC--------------CCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC-CCCE
Q 038990 263 ILHVKVIRAIRLLKMDIFG--------------ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQV 327 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~ 327 (505)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|+++++++||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999865 4899999999999999999997644 3568
Q ss_pred EEEEEEEcCCCCCCcccEEEEEECccCCCCC
Q 038990 328 LQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~ 358 (505)
|.++|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999887654
No 82
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=7.9e-16 Score=129.75 Aligned_cols=103 Identities=46% Similarity=0.692 Sum_probs=92.4
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|++|+..+..+.+||||++++++.. .++|+++.++.||.|||+|.|.+.+...+.+.++|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3689999999999999999999976667889999999998889999
Q ss_pred cEEEEEECccCCCCCeeEEEEeccc
Q 038990 344 LGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++.+++.++..+.....|++|..
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC
Confidence 9999999999998888889998864
No 83
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.67 E-value=5.4e-16 Score=132.62 Aligned_cols=104 Identities=34% Similarity=0.518 Sum_probs=90.4
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecC---CCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDP---ETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~---~~~~L~v~v~d~d~ 337 (505)
|.|.|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999999888899999999998654 4777776 489999999999999775 35789999999999
Q ss_pred CCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 338 VGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
.++|++||++.+++.++..+.....|+++..
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999988777777777644
No 84
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.67 E-value=1.3e-15 Score=135.39 Aligned_cols=96 Identities=21% Similarity=0.462 Sum_probs=82.5
Q ss_pred CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC
Q 038990 402 HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 402 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 480 (505)
+.+||||++++++.+ .+|++++++.||+|||+|.|.+... .+.|.++|+|++. . ++++||++.++++++..+.
T Consensus 56 g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~--~~~l~~~V~d~d~---~-~~~~IG~~~i~l~~l~~g~ 129 (158)
T cd04015 56 ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHY--ASHVEFTVKDNDV---V-GAQLIGRAYIPVEDLLSGE 129 (158)
T ss_pred CCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCC--CCEEEEEEEeCCC---c-CCcEEEEEEEEhHHccCCC
Confidence 357999999998866 4999999999999999999998654 3589999999873 3 5689999999999999888
Q ss_pred EEeEEEEeCCC------CCceEEEEEEEE
Q 038990 481 RLKEKYHLINS------KNGAVQVEIKWK 503 (505)
Q Consensus 481 ~~~~~~~L~~~------~~G~i~l~~~~~ 503 (505)
..++||+|.+. +.|+|+|+++|.
T Consensus 130 ~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 130 PVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 88999999753 268999999984
No 85
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.67 E-value=6.5e-16 Score=131.10 Aligned_cols=100 Identities=44% Similarity=0.611 Sum_probs=87.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
|.|.|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999998754 5899999999999999999998653 57899999999988899
Q ss_pred cccEEEEEECccCCCCCeeEEEEecc
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
++||++.+++.++..+..+ |+.|.
T Consensus 77 ~~iG~~~~~l~~~~~~~~~--~~~l~ 100 (119)
T cd08377 77 EFLGKVAIPLLSIKNGERK--WYALK 100 (119)
T ss_pred ceeeEEEEEHHHCCCCCce--EEECc
Confidence 9999999999999876544 55554
No 86
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.66 E-value=6.5e-16 Score=131.77 Aligned_cols=100 Identities=32% Similarity=0.544 Sum_probs=85.6
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC--C
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT--H 341 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~--d 341 (505)
|+|+|++|++|+..+..+.+||||++++++.. .++|+++++++||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999997532 3689999999999999999999965 6799999999998775 5
Q ss_pred cccEEEEEECccCCCCC-eeEEEEecc
Q 038990 342 DKLGMQVVPLRSLTPNE-TKELTLDLV 367 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~-~~~~~l~l~ 367 (505)
++||++.++++++.... ....|+++.
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~ 104 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLR 104 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEee
Confidence 79999999999987554 335576663
No 87
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.66 E-value=4.5e-16 Score=132.34 Aligned_cols=99 Identities=25% Similarity=0.280 Sum_probs=83.7
Q ss_pred eEEEEEeeecCCCC--CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEe-eCCC-CCCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEG--KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDF-EEAP-LKEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v-~~~~-~~~~l~i~V~d~~~~ 457 (505)
...|.|++|++|+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+ .... .+..|.++|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~- 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS- 92 (122)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-
Confidence 35899999999976 35899999999963 356999999999999999999987 3221 23589999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
++++++||++.++|+++..+.....||+|
T Consensus 93 --~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 93 --LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred --CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 67899999999999999987777899987
No 88
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=4.6e-16 Score=134.61 Aligned_cols=101 Identities=33% Similarity=0.530 Sum_probs=87.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecC----CCCEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDP----ETQVL 328 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~~L 328 (505)
+....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|+||.|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344568899999999999999888999999999997532 2357999999999999999999998652 35689
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
.++|||++..+++++||++.++++++...
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999998854
No 89
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=1.2e-15 Score=130.21 Aligned_cols=108 Identities=22% Similarity=0.427 Sum_probs=92.9
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|.+|++|+.. +.+||||++++++...+|++++++.||+|||+|.|.+... ....|.|+|||++. .+.+++
T Consensus 3 ~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~---~~~~~~ 78 (123)
T cd04025 3 RCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL---VSKNDF 78 (123)
T ss_pred EEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC---CCCCcE
Confidence 6899999999763 4789999999998888999999999999999999999875 24689999999984 677899
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCC---------CCceEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINS---------KNGAVQVEI 500 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~---------~~G~i~l~~ 500 (505)
||++.++|+++..+.....||.|... ..|.|++.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999876666899999752 258888875
No 90
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=9.8e-16 Score=132.49 Aligned_cols=103 Identities=31% Similarity=0.475 Sum_probs=89.8
Q ss_pred eEEEEEEEeeccCccccCCC----------CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIF----------GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQL 330 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v 330 (505)
.|.|+|+|++|++|+..+.. +.+||||++++++... .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988852 5789999999987653 58899999999999999999996 3578999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCC--CCeeEEEEecc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTP--NETKELTLDLV 367 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~--~~~~~~~l~l~ 367 (505)
.|||++..++++++|++.++|+++.. +...+.|++|.
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE 117 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence 99999988899999999999999887 45667888774
No 91
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.65 E-value=5.8e-16 Score=131.48 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=84.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
.|.|+|++|+||+.+ .+||||++++++.. .+|++++++.||.|||+|.|.+..+....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 489999999999887 68999999998643 5899999999999999999998776678999999999976 899
Q ss_pred ccEEEEEECccCCCCC-----eeEEEEeccc
Q 038990 343 KLGMQVVPLRSLTPNE-----TKELTLDLVK 368 (505)
Q Consensus 343 ~lG~~~i~l~~l~~~~-----~~~~~l~l~~ 368 (505)
+||++.++++++.... ....|++|..
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~ 103 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLED 103 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccC
Confidence 9999999999987542 2346777754
No 92
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=1.1e-15 Score=132.85 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=83.7
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE-ccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS-KRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d-~~~~ 457 (505)
..|+|++|+||... +.+||||++++... ++||+++++|.||+|||+|.|.+. . .+..|.++||+ ++
T Consensus 31 L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~-- 106 (146)
T cd04028 31 LEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYG-- 106 (146)
T ss_pred EEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCC--
Confidence 47999999999652 47899999999542 569999999999999999999998 2 45689999995 44
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
.+.++++||.+.++|+++..+.....||+|...
T Consensus 107 -~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 -RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred -CCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 267889999999999998766677899999865
No 93
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.3e-15 Score=127.66 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=81.7
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
+.|.|+|++|++|+.++ ..||||++.+++.+ .+|++.++ .||.|||+|.|.+.+.. ..|.++|||+|.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CC
Confidence 68999999999997654 46999999998765 48888877 59999999999997644 4599999999854 89
Q ss_pred cccEEEEEECccCCCCCee--EEEEeccc
Q 038990 342 DKLGMQVVPLRSLTPNETK--ELTLDLVK 368 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~--~~~l~l~~ 368 (505)
|+||++.++|+++..+... ..|++|..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 9999999999998866544 57777754
No 94
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=1.1e-15 Score=132.64 Aligned_cols=108 Identities=27% Similarity=0.390 Sum_probs=92.0
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCe-ecceeeeeeeCCCCCCeEceeEEEEeecC---------------CCCE
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGE-RIPAKKTSVKMKTLNPEWNEDFKLTVKDP---------------ETQV 327 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~wne~f~~~v~~~---------------~~~~ 327 (505)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999841 12346999999999999999999998765 4578
Q ss_pred EEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCC
Q 038990 328 LQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNP 372 (505)
Q Consensus 328 L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~ 372 (505)
|.++|||++..+++++||++.+++.++........|++|.+...+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999888999999999999999877777888888765433
No 95
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1e-15 Score=132.58 Aligned_cols=104 Identities=41% Similarity=0.595 Sum_probs=87.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV 338 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~ 338 (505)
.|+|+|++|++|+.++..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 389999999999999988999999999997641 224689999999999999999999864 356899999999999
Q ss_pred CCCcccEEEEEECccCCCCCe------eEEEEecc
Q 038990 339 GTHDKLGMQVVPLRSLTPNET------KELTLDLV 367 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~------~~~~l~l~ 367 (505)
+++++||++.++++++..+.. ...|++|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~ 114 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR 114 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeee
Confidence 999999999999999886543 23566654
No 96
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.3e-15 Score=127.48 Aligned_cols=98 Identities=27% Similarity=0.368 Sum_probs=83.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC----CCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE----TQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~----~~~L~v~v~d~d~ 337 (505)
..|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.++|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 57899999999998 4789999999999764 58999999999999999999986432 4689999999999
Q ss_pred CCCCcccEEEEEECccCCCCCee---EEEEec
Q 038990 338 VGTHDKLGMQVVPLRSLTPNETK---ELTLDL 366 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~~---~~~l~l 366 (505)
.++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999776443 456665
No 97
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=1.2e-15 Score=127.44 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=86.2
Q ss_pred EEEEeeecCCCC----CCCCCCEEEEEEcCeEEEeecccCCCCCcc-CceEEEEeeCCCC-CCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEG----KHHNNPYAVVICRGEQKKTKMIKKCRDPIW-NEEFQFDFEEAPL-KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|++|++|+. .+.+||||++++++..++|++++++.||+| ||.|.|.+..... ++.|.|+|||++. .++
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~---~~~ 78 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT---YSA 78 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC---CCC
Confidence 589999999975 247899999999998889999999999999 9999999976533 3589999999984 678
Q ss_pred CCccEEEEEecccccc---CCEEeEEEEeCC
Q 038990 463 KESLGYVDINLHDVLH---NGRLKEKYHLIN 490 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~---~~~~~~~~~L~~ 490 (505)
+++||++.+++.++.. +...++||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 8999999999999988 345789999976
No 98
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.9e-15 Score=129.22 Aligned_cols=112 Identities=21% Similarity=0.373 Sum_probs=93.6
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC--eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG--EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 461 (505)
.+|+|.+|++|+.. +.+||||++++++ ..++|++++++.||.|||.|.|.+.. ..+.|.++|||++. .+
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~---~~ 78 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND---KR 78 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---CC
Confidence 37899999999842 3689999999988 66799999999999999999999873 35789999999984 67
Q ss_pred CCCccEEEEEeccccccCCEEeE-EEEeC--CCCCceEEEEEEEEe
Q 038990 462 SKESLGYVDINLHDVLHNGRLKE-KYHLI--NSKNGAVQVEIKWKA 504 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~~~~~~-~~~L~--~~~~G~i~l~~~~~~ 504 (505)
++++||++.++|.++........ ++.+. +...|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 89999999999999998765543 44443 334899999999987
No 99
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.64 E-value=7.7e-16 Score=130.79 Aligned_cols=99 Identities=29% Similarity=0.448 Sum_probs=86.8
Q ss_pred EeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCC----CC
Q 038990 268 VIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEK----VG 339 (505)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~----~~ 339 (505)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+.....+.|.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999988999999999997653 224699999999999999999998765556789999999997 78
Q ss_pred CCcccEEEEEECccCCCCCeeEEEEec
Q 038990 340 THDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
++++||++.++++++..+.....+++|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988878888877
No 100
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=6.8e-16 Score=130.51 Aligned_cols=99 Identities=20% Similarity=0.331 Sum_probs=83.2
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 460 (505)
..|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........+.++||+++.. .
T Consensus 14 L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~--~ 91 (119)
T cd08685 14 LTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK--S 91 (119)
T ss_pred EEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC--c
Confidence 48999999999764 5789999999964 2459999999999999999999997654445799999998741 2
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
.++++||.+.++|.++..++...+||.|
T Consensus 92 ~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 92 RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCEEEEEEEecHHHhccCccccceEeC
Confidence 3578999999999999877778999986
No 101
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.7e-15 Score=132.64 Aligned_cols=104 Identities=27% Similarity=0.373 Sum_probs=89.2
Q ss_pred EEEEeeecCCCCC-----------------CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEE
Q 038990 389 KATEYGAKDLEGK-----------------HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEV 451 (505)
Q Consensus 389 ~v~v~~a~~L~~~-----------------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V 451 (505)
.|+|++|++|+.. +.+||||++.+++++.+|++++++.||+|||+|.|.+..++..+.|.|+|
T Consensus 3 ~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v 82 (151)
T cd04018 3 IFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQI 82 (151)
T ss_pred EEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEE
Confidence 6899999999863 25899999999999999999999999999999999987665567899999
Q ss_pred EEccCCccCCCCCccEEEEEeccccccCCE-------EeEEEEeCCCCCce
Q 038990 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGR-------LKEKYHLINSKNGA 495 (505)
Q Consensus 452 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~~~~G~ 495 (505)
||++. .++|++||++.++++++...+. ...|+.|.++..+.
T Consensus 83 ~D~d~---~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 83 RDWDR---VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred EECCC---CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 99984 6789999999999999887552 35899998876544
No 102
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=2.6e-16 Score=136.83 Aligned_cols=108 Identities=31% Similarity=0.441 Sum_probs=88.4
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34467899999999999999998899999999998543 33356899999999999999999998632 345799999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
||+|..+++++||++.+++.. .+.....|.++
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 999999999999999999988 23334445544
No 103
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1.3e-15 Score=133.17 Aligned_cols=99 Identities=25% Similarity=0.294 Sum_probs=83.2
Q ss_pred EEEEeeecCCCC-CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeC-----------C--CC-CCeEE
Q 038990 389 KATEYGAKDLEG-KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEE-----------A--PL-KEKIH 448 (505)
Q Consensus 389 ~v~v~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~--~~-~~~l~ 448 (505)
.|+|++|++|+. .+.+||||++++.+ ..++|+++++|.||+|||+|.|.+.. + .. ...|.
T Consensus 3 ~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~ 82 (148)
T cd04010 3 SVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELR 82 (148)
T ss_pred EEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEE
Confidence 689999999976 36899999999976 45699999999999999999999951 1 11 23799
Q ss_pred EEEEEccCCccCCCCCccEEEEEeccccccC-CEEeEEEEeCC
Q 038990 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHN-GRLKEKYHLIN 490 (505)
Q Consensus 449 i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~ 490 (505)
|+||+++. .+.+++||++.|+|.++... .....||+|..
T Consensus 83 i~V~d~~~---~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 83 VDLWHASM---GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEcCCC---CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 99999984 57899999999999999886 56689999964
No 104
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.64 E-value=1e-15 Score=130.10 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=82.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEEC--CeecceeeeeeeCCCC-CCeEceeEEEEeecCC-CCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTL-NPEWNEDFKLTVKDPE-TQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~-nP~wne~f~~~v~~~~-~~~L~v~v 332 (505)
+....|.|+|+|++|+||++.+..+.+||||++++- +.+..++||+++++|+ ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 455679999999999999988656677999999874 3445568999999996 6999999999997533 34688899
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||++..+++++||++.++.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EeCCCCcCCceEEEEEECCccC
Confidence 9999999999999999999864
No 105
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1.5e-15 Score=129.71 Aligned_cols=109 Identities=36% Similarity=0.501 Sum_probs=91.9
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC---CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP---ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~~L~v~ 331 (505)
++...+.|+|+|++|++|+..+..+.+||||++++.+. +....+|++++++.||.|||+|.|..... ....+.++
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44566899999999999999988889999999998532 23357999999999999999999963322 35689999
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
|||++.. ++++||++.++++++..++.+++++.|
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 9999987 899999999999999999888887753
No 106
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.8e-15 Score=129.43 Aligned_cols=98 Identities=36% Similarity=0.494 Sum_probs=85.2
Q ss_pred eEEEEEEEeeccCccccC-CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 261 VGILHVKVIRAIRLLKMD-IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||+|.|.+. ...+.|.++|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467899999999873 23369999999999999999999986 45789999999999988
Q ss_pred CCcccEEEEEECccCCCCCee
Q 038990 340 THDKLGMQVVPLRSLTPNETK 360 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~ 360 (505)
+|++||++.+++.++......
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred CCceeEEEEEEHHHhccCccc
Confidence 999999999999999977554
No 107
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.64 E-value=4.7e-15 Score=125.80 Aligned_cols=107 Identities=21% Similarity=0.390 Sum_probs=92.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+. .+.+.++|||++. .+++++
T Consensus 4 ~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~---~~~~~~ 78 (119)
T cd08377 4 QVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDK---DKKPEF 78 (119)
T ss_pred EEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCC---CCCCce
Confidence 6889999999863 5789999999998888999999999999999999998653 4689999999984 578899
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEE
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
||++.+++.++..+. .+||+|.+. .+|+|.+++++
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999987654 589999754 38999999886
No 108
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=3.3e-16 Score=135.84 Aligned_cols=109 Identities=35% Similarity=0.504 Sum_probs=88.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|+|+|++|++|++.+..|.+||||++++.+ .+...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999889999999999853 233456899999999999999999988532 235699999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||++..+++++||++.+++... +.....|.++.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 9999999999999999998733 33334454443
No 109
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=8.7e-16 Score=133.54 Aligned_cols=98 Identities=33% Similarity=0.469 Sum_probs=84.6
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556789999999999999999889999999999843 33345689999999999999999999753 2356899999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||++..+++++||++.+++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9999999999999999999876
No 110
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.3e-15 Score=132.23 Aligned_cols=100 Identities=27% Similarity=0.384 Sum_probs=86.3
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe---ecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQL 330 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v 330 (505)
.+....+.|.|+|++|+||+..+..|.+||||++++.+. ...++||++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 456678999999999999999998899999999999642 2235699999999999999999999863 34668999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCC
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLT 355 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~ 355 (505)
+|||++..+++++||++.+++....
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999999887544
No 111
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=2.2e-15 Score=126.15 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=85.6
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCC---CCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL---KEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
+|+|++|++|. .+.+||||++++++++++|++++++.||.|||+|.|.+..+.. +..|.|+|||++. ++++++
T Consensus 7 ~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~---~~~~~~ 82 (111)
T cd04011 7 RVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS---LRSDTL 82 (111)
T ss_pred EEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc---cccCCc
Confidence 78999999998 5789999999999999999999999999999999999865421 3479999999984 677999
Q ss_pred cEEEEEeccccccC---CEEeEEEEeCC
Q 038990 466 LGYVDINLHDVLHN---GRLKEKYHLIN 490 (505)
Q Consensus 466 lG~~~i~L~~l~~~---~~~~~~~~L~~ 490 (505)
||++.++|+++... ....+||+|.+
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99999999999775 34689999975
No 112
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=5.4e-16 Score=134.83 Aligned_cols=99 Identities=35% Similarity=0.557 Sum_probs=84.7
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC--eecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG--ERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLH 331 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~ 331 (505)
.+....|.|.|+|++|++|+.++..|.+||||++++.+ .....++|+++++++||.|||+|.|.+... ....|.++
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 35567799999999999999999889999999999853 333456899999999999999999998632 23479999
Q ss_pred EEEcCCCCCCcccEEEEEECccC
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l 354 (505)
|||++.+++|++||++.+++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC
Confidence 99999999999999999999764
No 113
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=3.6e-15 Score=129.15 Aligned_cols=109 Identities=26% Similarity=0.429 Sum_probs=92.2
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCe-------EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGE-------QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
+|+|++|++|+.. +.+||||++++.+. .++|++++++.||.|||+|.|.+... ...|.++|||++.
T Consensus 3 ~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~-- 78 (133)
T cd04033 3 RVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR-- 78 (133)
T ss_pred EEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC--
Confidence 6899999999764 57999999999764 46899999999999999999998653 3589999999984
Q ss_pred cCCCCCccEEEEEeccccccCCE------EeEEEEeCCC-----CCceEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGR------LKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
.+.+++||++.++++++..+.. ..+||+|... ..|+|++++.|
T Consensus 79 -~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 -LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred -CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 6789999999999999887542 3589999842 37999999987
No 114
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.63 E-value=1.7e-15 Score=129.43 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=85.1
Q ss_pred eEEEEEeeecCCCC----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEG----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~ 456 (505)
...|.|++|+||+. .+.+||||++++.. .++||++++++.||+|||+|.|.+....+ +..|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 35899999999974 25799999999953 24699999999999999999999976433 3479999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+++++||++.++|.++..+.....||+|.
T Consensus 96 ---~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 96 ---FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ---CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 678999999999999998888889999984
No 115
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.63 E-value=4.6e-15 Score=126.11 Aligned_cols=108 Identities=19% Similarity=0.342 Sum_probs=91.0
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.|+|.+|++|+.. +.+||||+++++++. .+|++++++.||+|||.|.|.+... .+.|.++|||++. .+.++
T Consensus 3 ~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~---~~~d~ 77 (121)
T cd04054 3 YIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT---LSRDD 77 (121)
T ss_pred EEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC---CCCCC
Confidence 6899999999753 589999999998765 5999999999999999999998653 3689999999984 67899
Q ss_pred ccEEEEEeccccccCC-EEeEEEEeCCCC-----CceEEEEEE
Q 038990 465 SLGYVDINLHDVLHNG-RLKEKYHLINSK-----NGAVQVEIK 501 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~ 501 (505)
+||++.++++++.... ..++|++|.+.. .|+|+++++
T Consensus 78 ~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 78 VIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999999887643 468999997532 799998875
No 116
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=5.3e-15 Score=129.53 Aligned_cols=108 Identities=26% Similarity=0.274 Sum_probs=85.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecceeeeeeeCCCCCCeEceeEEEEeecCC--------CCEEEEE
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--------TQVLQLH 331 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--------~~~L~v~ 331 (505)
|.|.|....+.+|++.+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 455555555555788887889999999997 323444679999999999999999999995431 4579999
Q ss_pred EEEcCCC-CCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 332 VYDWEKV-GTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 332 v~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
|||++.+ ++|++||++.++|+.+........|++|...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~ 122 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG 122 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC
Confidence 9999876 5799999999999999877666668888643
No 117
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=5.1e-15 Score=128.44 Aligned_cols=103 Identities=26% Similarity=0.428 Sum_probs=84.5
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC---------CCCEEEEEEE
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP---------ETQVLQLHVY 333 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~---------~~~~L~v~v~ 333 (505)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 5899999999999999999975432 1257999999
Q ss_pred EcCCCCCCcccEEEEE-ECccCC---CCCeeEEEEeccc
Q 038990 334 DWEKVGTHDKLGMQVV-PLRSLT---PNETKELTLDLVK 368 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i-~l~~l~---~~~~~~~~l~l~~ 368 (505)
|+|..++|++||++.+ ++..+. .......|++|.+
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~ 117 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK 117 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec
Confidence 9999999999999987 444443 2355667887754
No 118
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=4.7e-15 Score=127.23 Aligned_cols=101 Identities=28% Similarity=0.526 Sum_probs=85.3
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC----
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV---- 338 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~---- 338 (505)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997643 5899999999999999999998654 46899999999852
Q ss_pred -------CCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 339 -------GTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 339 -------~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+.+++||++.+++.++... ...|++|.+.
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~ 113 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKR 113 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccC
Confidence 4799999999999988644 3467776543
No 119
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=8e-15 Score=127.20 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=91.9
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC--------CCCeEEEEEEEccCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP--------LKEKIHIEVKSKRRG 457 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~i~V~d~~~~ 457 (505)
+|+|++|++|+.. +.+||||++++++..++|+++++|.||.|||.|.|.+.... ....+.++|||++.
T Consensus 4 ~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~- 82 (135)
T cd04017 4 RAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDS- 82 (135)
T ss_pred EEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcC-
Confidence 6899999999763 58999999999998899999999999999999999854321 12469999999984
Q ss_pred ccCCCCCccEEEEE-ecccccc---CCEEeEEEEeCCC--CCceEEEEEEEEeC
Q 038990 458 LRLRSKESLGYVDI-NLHDVLH---NGRLKEKYHLINS--KNGAVQVEIKWKAI 505 (505)
Q Consensus 458 ~~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~L~~~--~~G~i~l~~~~~~~ 505 (505)
.+.+++||++.+ ++..+.. .....+||+|... ..|+|.|++++.++
T Consensus 83 --~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 83 --VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred --CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 678899999987 4444433 2456799999754 37999999999874
No 120
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=1.8e-15 Score=131.18 Aligned_cols=98 Identities=34% Similarity=0.460 Sum_probs=81.7
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v 332 (505)
+....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 44566899999999999999998899999999998432 23457899999999999999999998532 344799999
Q ss_pred EEcCCCCCCcccEEEEEECccC
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l 354 (505)
||+|..+++++||++.+.....
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999998765433
No 121
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.62 E-value=1e-14 Score=127.76 Aligned_cols=113 Identities=20% Similarity=0.343 Sum_probs=91.2
Q ss_pred EEEEeeecCC--CC---CCCCCCEEEEEE--c---CeEEEeecccCCCCCccCceEEEEeeCCC------C-CCeEEEEE
Q 038990 389 KATEYGAKDL--EG---KHHNNPYAVVIC--R---GEQKKTKMIKKCRDPIWNEEFQFDFEEAP------L-KEKIHIEV 451 (505)
Q Consensus 389 ~v~v~~a~~L--~~---~~~~dpyv~v~~--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~------~-~~~l~i~V 451 (505)
.++|..|+++ +. .+.+||||++++ . ..+.||+++++|.||+|||+|.|.+.... . ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 6788888884 43 357999999997 2 23569999999999999999999996541 1 23799999
Q ss_pred EEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC---CCceEEEEEEEE
Q 038990 452 KSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS---KNGAVQVEIKWK 503 (505)
Q Consensus 452 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---~~G~i~l~~~~~ 503 (505)
||++.. +.+|++||++.++|+.+..+....+|++|.++ .+|+|+++++-+
T Consensus 85 ~d~~~f--~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 85 YHKGGF--LRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred EeCCCc--ccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence 999841 35799999999999999887777889999854 279999999865
No 122
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.62 E-value=2e-15 Score=129.00 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=83.8
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
..|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||+|.|.+....+. ..|.++|||++.
T Consensus 17 L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~- 95 (125)
T cd08393 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS- 95 (125)
T ss_pred EEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 48999999999753 5799999999953 236999999999999999999998754333 489999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++++++||++.++|.++..+.....||+|.
T Consensus 96 --~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 96 --LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred --CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 678999999999999997776678999984
No 123
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=1.1e-14 Score=126.15 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=94.4
Q ss_pred EEEEEeeecCCCCCCCCCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc-CCCCCc
Q 038990 388 GKATEYGAKDLEGKHHNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR-LRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~-~~~d~~ 465 (505)
..|.|.+|++|+.+ .+|||++.+++... +|+++.++.||.|+|.|+|.+..+ ...+.|.|+..+.... ..++.+
T Consensus 13 L~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~~~~ 88 (146)
T cd04013 13 LKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDKSQL 88 (146)
T ss_pred EEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccCCcE
Confidence 48999999999885 48999999999885 999999999999999999976543 3579999976543100 125789
Q ss_pred cEEEEEeccccccCCEEeEEEEeCCCC-------------CceEEEEEEEEeC
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLINSK-------------NGAVQVEIKWKAI 505 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~~~-------------~G~i~l~~~~~~~ 505 (505)
||.+.|+++++..+...++||+|.+.. .++|+++++|.++
T Consensus 89 IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 89 IGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 999999999999888889999997532 2799999999874
No 124
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.61 E-value=1.5e-14 Score=123.91 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=92.2
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
+.+|+|++|++|... +.+||||+++++++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++. . +|
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~---~-~d 77 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL---L-CD 77 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC---C-CC
Confidence 358999999999763 5899999999999999999999999999999999988764 4689999999873 3 58
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCC-------CCCceEEEEEEEEe
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLIN-------SKNGAVQVEIKWKA 504 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~-------~~~G~i~l~~~~~~ 504 (505)
++||++.++++++.. ...++|+|.. ...|+|.+++...+
T Consensus 78 ~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 78 EFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999999999987643 3468899942 23799999998764
No 125
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.61 E-value=7.5e-16 Score=133.78 Aligned_cols=111 Identities=27% Similarity=0.296 Sum_probs=90.5
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.. .....|.++|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 4456789999999999999988 788999999998653 2345689999999999999999999853 2356899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
||++..+++++||++.++......++..+.|.++.+
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999766655555555555543
No 126
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.61 E-value=3.6e-15 Score=127.61 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=83.1
Q ss_pred eEEEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccC
Q 038990 387 VGKATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRR 456 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~ 456 (505)
...|+|++|+||+.. +.+||||++++... ++||++++++.||+|||+|.|.+....+. ..|.++||+.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 348999999999652 67899999999632 55999999999999999999999765443 489999999984
Q ss_pred CccCCCCCccEEEEEeccccccC---CEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHN---GRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~ 489 (505)
++++++||++.|+|+++.-. ....+||+|.
T Consensus 96 ---~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 ---LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ---CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 67899999999999998553 2668999984
No 127
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.60 E-value=6.7e-15 Score=122.10 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=78.6
Q ss_pred EEEEEeeecCCCCC-------CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK-------HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 460 (505)
..|+|.+|++|+.. +.+||||++++++..+||++++++.||+|||.|.|.+.+...+..|.|+|||++. .
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~---~ 79 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK---F 79 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC---C
Confidence 37899999999753 2489999999988888999999999999999999999765444589999999984 6
Q ss_pred CCCCccEEEEEeccccccCC
Q 038990 461 RSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~ 480 (505)
+++++||++.++|+++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 78999999999999998754
No 128
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.60 E-value=3.2e-15 Score=172.49 Aligned_cols=113 Identities=27% Similarity=0.545 Sum_probs=102.9
Q ss_pred EEEEEeeecCCCCC-CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEGK-HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
..|+|++|+||.+. +.+||||++.+++. ++||++++++.||+|||.|+|.+.+++.+++++|+|||++. + +++.
T Consensus 1982 L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~---f-~kd~ 2057 (2102)
T PLN03200 1982 LTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT---F-GKSS 2057 (2102)
T ss_pred eEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc---c-CCCC
Confidence 38999999999965 79999999999955 77999999999999999999999998777789999999984 5 5669
Q ss_pred cEEEEEeccccccCCEEeEEEEeCC--CCCce---EEEEEEEEe
Q 038990 466 LGYVDINLHDVLHNGRLKEKYHLIN--SKNGA---VQVEIKWKA 504 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~~~~~~~L~~--~~~G~---i~l~~~~~~ 504 (505)
+|+++|+|.++..++.+.+||+|.+ ++.|+ |+++++|++
T Consensus 2058 ~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 9999999999999999999999997 56899 999999986
No 129
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=3.6e-15 Score=127.72 Aligned_cols=104 Identities=23% Similarity=0.391 Sum_probs=88.2
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeC-CCCCCeEceeEEEEeecCC----CCEEEEEEEEcCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKM-KTLNPEWNEDFKLTVKDPE----TQVLQLHVYDWEK 337 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~~~v~~~~----~~~L~v~v~d~d~ 337 (505)
.|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||+|.|.+.+.. ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 479999999999999888999999999998722 25788864 6899999999999997653 6789999999998
Q ss_pred CCCCcccEEEEEECccCCCCCe-----eEEEEeccc
Q 038990 338 VGTHDKLGMQVVPLRSLTPNET-----KELTLDLVK 368 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~l~l~~ 368 (505)
.++|++||++.+++.++..+.. +..|++|.+
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 8899999999999999987654 356777764
No 130
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=4.1e-16 Score=150.91 Aligned_cols=106 Identities=31% Similarity=0.506 Sum_probs=90.2
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecC-CCCEEEEEEEEcC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQVLQLHVYDWE 336 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~L~v~v~d~d 336 (505)
....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.++||+|||+|.|.+... ....|.++|||||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 557899999999999999999999999999996543 3357899999999999999999999643 3578999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
+.+++||+|..++.+++|... +..-|+.|
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKl 286 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKL 286 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHH
Confidence 999999999999999999866 23334443
No 131
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=4.4e-15 Score=126.00 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=82.3
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcC------eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRG------EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
..|+|++|+||.. .+.+||||++++.. .+++|++++++.||+|||+|+|.+....+. ..|.++||+++.
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~- 94 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP- 94 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC-
Confidence 5899999999975 36899999999842 256999999999999999999999765443 489999999874
Q ss_pred ccCCCCCccEEEEEeccccccC-CEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHN-GRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 488 (505)
.+++++||.+.++|+++... +...+||+|
T Consensus 95 --~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 95 --DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred --CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 77899999999999999554 456889976
No 132
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.1e-14 Score=125.08 Aligned_cols=96 Identities=31% Similarity=0.494 Sum_probs=85.4
Q ss_pred EeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCCCCcccE
Q 038990 268 VIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVGTHDKLG 345 (505)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~~d~~lG 345 (505)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||.|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998754 5899999999999999999999754 4688999999999989999999
Q ss_pred EEEEECccCCCCCeeEEEEeccc
Q 038990 346 MQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 346 ~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
++.++++++..+.....|++|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~ 99 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLD 99 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcC
Confidence 99999999998888888888853
No 133
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.59 E-value=5.2e-15 Score=127.48 Aligned_cols=88 Identities=24% Similarity=0.417 Sum_probs=79.8
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|.|.+|.+|..+ +.+||||.+.+++++.||+++++++||+|||.|+|.+.++ +..+.++|||++. +++|+
T Consensus 8 L~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---fs~dD 82 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---FSSDD 82 (168)
T ss_pred EEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC---CCccc
Confidence 47899999999653 5899999999999999999999999999999999999987 4689999999995 89999
Q ss_pred ccEEEEEeccccccCC
Q 038990 465 SLGYVDINLHDVLHNG 480 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~ 480 (505)
++|.++|+|..++...
T Consensus 83 ~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccceeeeccHHHHHHh
Confidence 9999999998887643
No 134
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.59 E-value=7.9e-15 Score=121.27 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=69.9
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc------
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW------ 335 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~------ 335 (505)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|+|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 679999999995 568999999997632 34579999999999999999999995 367999999998
Q ss_pred -CCCCCCcccEEEEEECc
Q 038990 336 -EKVGTHDKLGMQVVPLR 352 (505)
Q Consensus 336 -d~~~~d~~lG~~~i~l~ 352 (505)
|..++|+.+|++.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 45678999988888775
No 135
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.59 E-value=1.6e-14 Score=123.18 Aligned_cols=106 Identities=27% Similarity=0.442 Sum_probs=87.7
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEc-CeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC--
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICR-GEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS-- 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~-- 462 (505)
+|+|++|++|+.. +.+||||+++++ ...++|++++++.||.|||.|+|.+.. ++.|.++|||++. ++.
T Consensus 3 ~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~---~~~~~ 76 (123)
T cd08382 3 RLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK---FKKKD 76 (123)
T ss_pred EEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC---CCCCC
Confidence 6899999999764 579999999997 456799999999999999999999965 4689999999985 443
Q ss_pred CCccEEEEEeccccccCC-EEeEEEEeCCCC-------CceEEEEE
Q 038990 463 KESLGYVDINLHDVLHNG-RLKEKYHLINSK-------NGAVQVEI 500 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-------~G~i~l~~ 500 (505)
+++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 77 d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 77 QGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998754 347899995432 68888775
No 136
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=8e-15 Score=126.64 Aligned_cols=107 Identities=33% Similarity=0.506 Sum_probs=91.8
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecC-CCCEEEEEEEEcCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDP-ETQVLQLHVYDWEKV 338 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~~L~v~v~d~d~~ 338 (505)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999642 22346899999999999999999998653 356899999999988
Q ss_pred CCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 339 GTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+++++||++.++++++... ....|++|...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8999999999999999865 66778887654
No 137
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=3.2e-14 Score=121.99 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=90.6
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCe---EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGE---QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|.+|++|+.. +.+||||++++.+. ..+|++++++.||.|||+|.|.+... ....|.|+|||++. .+.
T Consensus 4 ~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---~~~ 79 (126)
T cd04043 4 TIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---VGK 79 (126)
T ss_pred EEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC---CCC
Confidence 6899999999753 58899999998643 46999999999999999999999775 34689999999984 568
Q ss_pred CCccEEEEEeccccccC---CEEeEEEEeCCCCCceEEEEEEEE
Q 038990 463 KESLGYVDINLHDVLHN---GRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~---~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
+++||++.++|+++... ...+.|++|.. +|+|++++.+.
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 89999999999886542 24578999964 79999988774
No 138
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=1.7e-15 Score=131.32 Aligned_cols=111 Identities=34% Similarity=0.406 Sum_probs=92.0
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHV 332 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v 332 (505)
+....+.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 44456899999999999999988889999999998654 233568999999999999999999986543 57899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
||++..+++++||++.+++++ .+...+.|+++...
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 999988899999999999999 44445566666543
No 139
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=1e-14 Score=121.96 Aligned_cols=95 Identities=29% Similarity=0.531 Sum_probs=79.9
Q ss_pred EeeccCccccCCCCCCCcEEEEEECCe---ecceeeeeeeCCCCCCeEceeEEEEeecCC----CCEEEEEEEEcCCCCC
Q 038990 268 VIRAIRLLKMDIFGASDPYVQLSLSGE---RIPAKKTSVKMKTLNPEWNEDFKLTVKDPE----TQVLQLHVYDWEKVGT 340 (505)
Q Consensus 268 v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~~~~~t~nP~wne~f~~~v~~~~----~~~L~v~v~d~d~~~~ 340 (505)
.++|++|+..|..|.+||||++++.+. ....++|+++++++||.|| +|.|.+.... .+.|.++|||++..++
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 469999999999999999999998654 2334799999999999999 6888764322 5789999999999999
Q ss_pred CcccEEEEEECccCCCCCeeEEE
Q 038990 341 HDKLGMQVVPLRSLTPNETKELT 363 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~~~~~~~ 363 (505)
|++||++.++++++..+..+++.
T Consensus 85 d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 85 HDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CcEEEEEEEEHHHHhcCCCceEE
Confidence 99999999999999976665543
No 140
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=2.7e-14 Score=123.25 Aligned_cols=104 Identities=27% Similarity=0.407 Sum_probs=83.8
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEECCeec----------ceeeeeeeCCCCCCeE-ceeEEEEeecCCCCEEEEE
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI----------PAKKTSVKMKTLNPEW-NEDFKLTVKDPETQVLQLH 331 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~~T~~~~~t~nP~w-ne~f~~~v~~~~~~~L~v~ 331 (505)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 77789999999999965332 2579999999999999 999999984 35789999
Q ss_pred EEEcCCCCC---CcccEEEEEECccCCCCCe---eEEEEecccc
Q 038990 332 VYDWEKVGT---HDKLGMQVVPLRSLTPNET---KELTLDLVKN 369 (505)
Q Consensus 332 v~d~d~~~~---d~~lG~~~i~l~~l~~~~~---~~~~l~l~~~ 369 (505)
|||++..++ +++||++.++++++..+.. ..+++++.+.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 999875443 7999999999999986632 4456665543
No 141
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.57 E-value=1.3e-14 Score=123.98 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=85.1
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCcc
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLR 459 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~ 459 (505)
...|+|++|++|+.. +.+||||++++.. ..++|++++++.||+|||+|.|.+..... +..|.++|||++.
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~--- 93 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ--- 93 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC---
Confidence 358999999999763 5899999999942 34699999999999999999999875432 3489999999974
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++++++||++.++|+++..+...+.||+|+
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 678999999999999998877889999986
No 142
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.57 E-value=3.4e-14 Score=121.83 Aligned_cols=108 Identities=26% Similarity=0.457 Sum_probs=88.1
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc-------
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL------- 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~------- 458 (505)
+|+|++|++|+.. +.+||||++++++..++|++++++.||+|||.|.|.+..+ .+.|.|+|||++...
T Consensus 4 ~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 4 SITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred EEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccccee
Confidence 6889999999763 5789999999988888999999999999999999998654 358999999987410
Q ss_pred -cCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEE
Q 038990 459 -RLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEI 500 (505)
Q Consensus 459 -~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~ 500 (505)
..+.+++||++.+++.++.. ..+.||.|... .+|+|.+++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 01468999999999998754 34799999853 278888864
No 143
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=3.8e-14 Score=119.80 Aligned_cols=108 Identities=24% Similarity=0.374 Sum_probs=85.1
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCCCcc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d~~l 466 (505)
+|+|++|++|+..+.+||||++++++.. .+|+++++ .||.|||+|.|.+...... ..+.+.+++++. ...+..+
T Consensus 3 ~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~~~~~~~ 78 (117)
T cd08383 3 RLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---KDRDIVI 78 (117)
T ss_pred EEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc---CCCeeEE
Confidence 6899999999887899999999998854 69999999 9999999999999764322 367888888763 4455667
Q ss_pred EEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 467 GYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 467 G~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
|.+.+ ..+..+...++||+|.... .|+|+++++|
T Consensus 79 g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 79 GKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 76555 4444466678999997532 7999999986
No 144
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.57 E-value=1.5e-14 Score=123.65 Aligned_cols=99 Identities=23% Similarity=0.269 Sum_probs=84.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
.+|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... +..|.++|||++. +
T Consensus 18 L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~---~ 94 (124)
T cd08385 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR---F 94 (124)
T ss_pred EEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC---C
Confidence 48999999999763 5789999999854 34599999999999999999999875322 3489999999984 6
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
+++++||++.++|+++..+...++||+|.
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 78899999999999998777789999985
No 145
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.55 E-value=2e-14 Score=123.42 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=84.3
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~ 457 (505)
..+|+|++|+||+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.++||+++..
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~ 96 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc
Confidence 348999999999763 5899999999963 45799999999999999999999865433 24899999998741
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
..+.+++||++.++|+++..+....+||+|.
T Consensus 97 -~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 97 -LSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred -cCCCCceEEEEEEecccccccCCccceEECc
Confidence 0157899999999999998777778999984
No 146
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.55 E-value=5e-15 Score=127.83 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=87.1
Q ss_pred EEEEEeeecCCCCC-----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccC
Q 038990 388 GKATEYGAKDLEGK-----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRR 456 (505)
Q Consensus 388 a~v~v~~a~~L~~~-----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~ 456 (505)
..|+|++|+||... +.+||||++++... ++||++++++.||+|||.|.|.++...+. ..|.|+|||++.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~ 96 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS 96 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC
Confidence 48999999999753 34899999998652 35999999999999999999999865443 379999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
++++++||++.+++.. .+....+|.++..+++-.|. +|+++
T Consensus 97 ---~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va---~WH~L 137 (138)
T cd08407 97 ---PGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIA---MWHQL 137 (138)
T ss_pred ---CcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchh---EEEEC
Confidence 7889999999999975 34455788888766554444 56543
No 147
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=6.9e-14 Score=118.54 Aligned_cols=107 Identities=23% Similarity=0.398 Sum_probs=90.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
.+|+|++|++|+.. +.+||||++++++. .++|++++++.||+|||.|.|.+... ++.|.|+|||++. .+.+
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~---~~~d 77 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK---VGKD 77 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC---CCCC
Confidence 36899999999763 58999999999774 46999999999999999999998764 3689999999984 6788
Q ss_pred CccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEE
Q 038990 464 ESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEI 500 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~ 500 (505)
++||++.+++.++..+ ..+.||.|.+++++++.--+
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~ 113 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLKRLL 113 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecCCCcceeeEee
Confidence 9999999999999987 45899999998877665333
No 148
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=5.3e-14 Score=120.23 Aligned_cols=103 Identities=32% Similarity=0.493 Sum_probs=84.8
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d 341 (505)
..|.|+|++|+ |...+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 46899999998 555555788999999999865 23689999999999999999999853 57899999999999999
Q ss_pred cccEEEEEECccCCCCCe-----eEEEEecccc
Q 038990 342 DKLGMQVVPLRSLTPNET-----KELTLDLVKN 369 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~-----~~~~l~l~~~ 369 (505)
++||++.++++++..... ...|+++.+.
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~ 109 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSE 109 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEcc
Confidence 999999999999876433 2346766543
No 149
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.55 E-value=3.5e-14 Score=121.59 Aligned_cols=107 Identities=26% Similarity=0.391 Sum_probs=89.2
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcC-eEEEeeccc-CCCCCccCceEEEEeeCCCC---CCeEEEEEEEccCCccC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRG-EQKKTKMIK-KCRDPIWNEEFQFDFEEAPL---KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~~---~~~l~i~V~d~~~~~~~ 460 (505)
+|+|++|++|+.. +.+||||++++++ ..++|++++ ++.||.|||.|.|.+....+ ...|.++|||++. +
T Consensus 3 ~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~---~ 79 (125)
T cd04051 3 EITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP---S 79 (125)
T ss_pred EEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC---C
Confidence 6899999999863 5899999999988 778999876 58999999999999977521 4689999999974 5
Q ss_pred CCCCccEEEEEeccccccCCE-----EeEEEEeCCC---CCceEEE
Q 038990 461 RSKESLGYVDINLHDVLHNGR-----LKEKYHLINS---KNGAVQV 498 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~---~~G~i~l 498 (505)
+.+++||++.++|.++..+.. ...||+|.+. .+|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 789999999999999998653 3689999854 3687764
No 150
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.55 E-value=3e-14 Score=121.99 Aligned_cols=98 Identities=28% Similarity=0.365 Sum_probs=79.6
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCC-C-CCCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEA-P-LKEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~~~ 457 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+... . .+..|.|+|||++.
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~- 96 (125)
T cd04031 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR- 96 (125)
T ss_pred EEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC-
Confidence 48999999999763 5799999999965 356999999999999999999986432 1 23589999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+.+++||++.++|++... ....+||+|+
T Consensus 97 --~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 97 --DGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred --CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 6788999999999998333 3346899984
No 151
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.54 E-value=7.1e-15 Score=126.94 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=87.0
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
..|+|++|+||+. .+.+||||++++... ++||++++++.||+|||+|.|.+....+. ..|.|+|+|++.
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~-- 94 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE-- 94 (136)
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC--
Confidence 4899999999975 357999999999532 45899999999999999999999765443 479999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.++... .+....+|..+..+.+-.|. +|+.+
T Consensus 95 -~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~v~---~WH~l 135 (136)
T cd08406 95 -DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKPVA---MWHPL 135 (136)
T ss_pred -CCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCeee---Eeeec
Confidence 7789999999998764 34455789888876554443 66653
No 152
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.54 E-value=1.5e-14 Score=123.02 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=87.3
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCC-CCccCceEEEEeeCCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCR-DPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|+||+.. +.+||||++++.. +++||+++++|. ||+|||+|.|.+.....+-.+.|+|||++.
T Consensus 16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~-- 93 (135)
T cd08692 16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS-- 93 (135)
T ss_pred EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC--
Confidence 48999999999874 3569999999843 346999999994 699999999999875433378899999874
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.++.+.. .....++|.++..+++-.|. +|+++
T Consensus 94 -~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ia---~WH~L 135 (135)
T cd08692 94 -VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVVT---KWHSL 135 (135)
T ss_pred -CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCeee---EeecC
Confidence 67899999999999763 23345789888877666555 77653
No 153
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.52 E-value=1.4e-13 Score=120.13 Aligned_cols=87 Identities=25% Similarity=0.477 Sum_probs=77.9
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.+|+|++|++|+.. +.+||||+++++++.++|++++++.||+|||.|.|.+.++ ...+.++|||++. ++.|++
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~---~~~dd~ 78 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT---FSKDDS 78 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC---CCCCCE
Confidence 37899999999753 5899999999999999999999999999999999999876 4689999999985 788999
Q ss_pred cEEEEEeccccccC
Q 038990 466 LGYVDINLHDVLHN 479 (505)
Q Consensus 466 lG~~~i~L~~l~~~ 479 (505)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999988764
No 154
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.52 E-value=2e-13 Score=117.79 Aligned_cols=109 Identities=21% Similarity=0.366 Sum_probs=86.2
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEcC-------------eEEEeecccCCCCCcc-CceEEEEeeCCCCCCeEEEEEE
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICRG-------------EQKKTKMIKKCRDPIW-NEEFQFDFEEAPLKEKIHIEVK 452 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i~V~ 452 (505)
+|++++|+||+.. +.+||||++++.+ +.++|++++++.||+| ||+|.|.+.. ++.|.++||
T Consensus 4 ~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~V~ 80 (137)
T cd08691 4 SLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIEVK 80 (137)
T ss_pred EEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEEEE
Confidence 5788999999742 6899999999953 2579999999999999 9999999953 368999999
Q ss_pred EccCCccCCCCCccEEEEEeccccccCC---EEeEEEEeCCCC-----CceEEEEE
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNG---RLKEKYHLINSK-----NGAVQVEI 500 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~L~~~~-----~G~i~l~~ 500 (505)
|++.......+++||++.++++++.... ....||+|.... +|+|.+.+
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9763100113799999999999998753 457899997543 68887765
No 155
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.52 E-value=8.6e-14 Score=120.73 Aligned_cols=101 Identities=25% Similarity=0.368 Sum_probs=86.7
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEc----CeEEEeecccCCCCCccCceEEEEeeCCC--------------CCCeEE
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICR----GEQKKTKMIKKCRDPIWNEEFQFDFEEAP--------------LKEKIH 448 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l~ 448 (505)
+|.|++|++|+.. +.+||||+++++ ...++|++++++.||.|||+|.|.+.... ....+.
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELR 81 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEE
Confidence 5889999999754 689999999998 56679999999999999999999987642 234899
Q ss_pred EEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC
Q 038990 449 IEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK 492 (505)
Q Consensus 449 i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 492 (505)
|+|||++. .+.+++||++.+++.++........||+|...+
T Consensus 82 i~V~d~~~---~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 82 VELWHASM---VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEcCCc---CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999984 568999999999999998777778999998653
No 156
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.52 E-value=6.1e-15 Score=142.86 Aligned_cols=106 Identities=25% Similarity=0.419 Sum_probs=92.7
Q ss_pred ceEEEEEeeecCCCC---CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC
Q 038990 386 EVGKATEYGAKDLEG---KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG 457 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~ 457 (505)
+..+|+|.+|+||-. +|.+||||++.+-. .++||++++.++||+|||+|+|.+...+.++.|.|+|||++.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr- 258 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR- 258 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc-
Confidence 456899999999954 57999999999844 346999999999999999999999887777899999999994
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCce
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGA 495 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~ 495 (505)
.++++++|+.++.+++|+... .+.||.|.+...|+
T Consensus 259 --TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 --TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred --cccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 789999999999999998764 48999999887765
No 157
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.52 E-value=6.4e-14 Score=119.58 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=82.6
Q ss_pred EEEEEeeecCCCC----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEG----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~ 457 (505)
..|+|.+|+||+. .+.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.|+|||++.
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~- 94 (123)
T cd08521 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR- 94 (123)
T ss_pred EEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC-
Confidence 4899999999974 35899999999843 34699999999999999999999875432 3489999999884
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
.+++++||++.++|+++..+...++||+|
T Consensus 95 --~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 95 --FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred --CcCCceeeEEEEecccccccCCCccEEEC
Confidence 67889999999999999777777899987
No 158
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.52 E-value=1.8e-14 Score=125.12 Aligned_cols=112 Identities=20% Similarity=0.316 Sum_probs=90.5
Q ss_pred EEEEEeeecCCCCC--CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK--HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~ 459 (505)
..|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||+|.|.+...++. ..|.|+|++++.
T Consensus 17 L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~--- 93 (137)
T cd08409 17 LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG--- 93 (137)
T ss_pred EEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC---
Confidence 48999999999753 5799999999864 245999999999999999999999755444 489999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.++......+....+|+++..+++..|. +|+.|
T Consensus 94 ~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~---~WH~l 136 (137)
T cd08409 94 VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIK---RWHAL 136 (137)
T ss_pred CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCcee---EEEeC
Confidence 67889999999997665556667889999877665444 77654
No 159
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.52 E-value=7.6e-14 Score=120.51 Aligned_cols=105 Identities=27% Similarity=0.440 Sum_probs=89.7
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
.+|+|++|++|+. .+.+||||++++.+ ..++|++++++.||.|||+|.|.+........|.++|||++.
T Consensus 15 l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~--- 91 (131)
T cd04026 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR--- 91 (131)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC---
Confidence 4799999999975 35799999999963 457999999999999999999998765445689999999874
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceE
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAV 496 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 496 (505)
.+.+++||++.++|+++... ....||+|.+.+.|+.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 67889999999999999865 5678999999888864
No 160
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.52 E-value=7.4e-14 Score=116.80 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=80.4
Q ss_pred EEEEEeeecCCCC---C-CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCC--CCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG---K-HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAP--LKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+. . +.+||||++++.+ ..++|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-- 80 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-- 80 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC--
Confidence 3789999999975 3 5789999999853 3469999999999999999999886532 23589999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
.+.+++||++.++++++... .+|+++..
T Consensus 81 -~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 -FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred -CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 67899999999999999854 47888764
No 161
>PLN03008 Phospholipase D delta
Probab=99.51 E-value=1.4e-13 Score=146.16 Aligned_cols=98 Identities=17% Similarity=0.487 Sum_probs=86.6
Q ss_pred CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC
Q 038990 402 HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 402 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 480 (505)
+.+||||++.+++.+ .||++++++.||+|||+|.|.|.++ ...|.|+|+|++. + +++.||++.|+|.++..+.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~---~-gaD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV---F-GAQIIGTAKIPVRDIASGE 148 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc---c-CCceeEEEEEEHHHcCCCC
Confidence 578999999998765 4999999999999999999999885 3589999999883 4 4689999999999999998
Q ss_pred EEeEEEEeCCC------CCceEEEEEEEEeC
Q 038990 481 RLKEKYHLINS------KNGAVQVEIKWKAI 505 (505)
Q Consensus 481 ~~~~~~~L~~~------~~G~i~l~~~~~~~ 505 (505)
..+.|++|.+. ++|+|+++++|+|+
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 88999999864 26899999999985
No 162
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.51 E-value=2.7e-13 Score=115.90 Aligned_cols=100 Identities=25% Similarity=0.499 Sum_probs=87.0
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccC-CCCCccCceEEEEeeCCCC--CCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKK-CRDPIWNEEFQFDFEEAPL--KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|.+|++|+.. +.+||||++++++..++|+++++ +.||.|||.|.|.+..+.. .+.|.|+|||++. +.+
T Consensus 4 ~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~---~~~ 80 (124)
T cd04049 4 EVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN---FSD 80 (124)
T ss_pred EEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---CCC
Confidence 6899999999763 58999999999988889998885 8999999999999987632 3589999999984 678
Q ss_pred CCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 463 KESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
+++||++.++++++..++..+.||+|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 89999999999999987777899999764
No 163
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.51 E-value=2.8e-13 Score=115.74 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=87.0
Q ss_pred EEEEeeecCCCC--CCCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEG--KHHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|+|.+|+.+.. .+.+||||++++++. .++|++++++.||+|||+|.|.+.. .+.|.|+|||++. .+.+++
T Consensus 5 ~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~---~~~~~~ 78 (125)
T cd04021 5 QITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT---LKADVL 78 (125)
T ss_pred EEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC---CCCCcE
Confidence 688888884433 247999999999887 6799999999999999999999864 3689999999984 678999
Q ss_pred cEEEEEeccccccCCE-----EeEEEEeCCCC------CceEEEEE
Q 038990 466 LGYVDINLHDVLHNGR-----LKEKYHLINSK------NGAVQVEI 500 (505)
Q Consensus 466 lG~~~i~L~~l~~~~~-----~~~~~~L~~~~------~G~i~l~~ 500 (505)
||++.++|+++..... ...|++|.... .|+|++++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999987431 34689996433 79988875
No 164
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.51 E-value=1.1e-13 Score=117.71 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=76.1
Q ss_pred EEEEEeeecCCCC--CCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCc
Q 038990 388 GKATEYGAKDLEG--KHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 388 a~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.+|+|++|++|+. .+.+||||+++++++.++|++++++.||+|||+|.|........+.|.|+|||++. .+.+++
T Consensus 30 L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---~s~dd~ 106 (127)
T cd04032 30 LTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---GWDDDL 106 (127)
T ss_pred EEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC---CCCCCe
Confidence 4899999999975 35789999999998888999999999999999999985443345689999999984 678999
Q ss_pred cEEEEEecccccc
Q 038990 466 LGYVDINLHDVLH 478 (505)
Q Consensus 466 lG~~~i~L~~l~~ 478 (505)
||++.++|.....
T Consensus 107 IG~~~i~l~~~~~ 119 (127)
T cd04032 107 LGTCSVVPEAGVH 119 (127)
T ss_pred eEEEEEEecCCce
Confidence 9999999987664
No 165
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.1e-14 Score=137.07 Aligned_cols=214 Identities=27% Similarity=0.350 Sum_probs=158.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEE--eecC-CCCEEEEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLT--VKDP-ETQVLQLH 331 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~--v~~~-~~~~L~v~ 331 (505)
++.....+..++..|++|++++..+..|||++..+.+. +..+.+|++..+++||.|+|+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 45567889999999999999999999999999998764 3344688899999999999865443 3222 24467788
Q ss_pred EEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccCCC--CCccccccccccc-ce--------EEEEEeeecCCCC
Q 038990 332 VYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNP--NDPQDKKFERKES-EV--------GKATEYGAKDLEG 400 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~--~~~~~~~~~g~~~-~~--------a~v~v~~a~~L~~ 400 (505)
+.|.+.+..++++|+..+++..+.+.+.+.+...|.+.+.+ .+.....++|.+. ++ ..+++..|.+|..
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~s 247 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLAS 247 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeec
Confidence 99999999999999999999999888765544433333221 1111112333211 11 2788888888854
Q ss_pred ---CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCCCccEEEEE
Q 038990 401 ---KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSKESLGYVDI 471 (505)
Q Consensus 401 ---~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d~~lG~~~i 471 (505)
++.+||||..++... ++||.+.++|.||+||+.|.|.+....+. .++.|.|||++. .++.+++|-+..
T Consensus 248 sDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~---G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 248 SDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI---GKSNDSIGGSML 324 (362)
T ss_pred cccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC---CcCccCCCcccc
Confidence 478999999998642 45999999999999999999999876553 389999999984 346777776655
Q ss_pred ec
Q 038990 472 NL 473 (505)
Q Consensus 472 ~L 473 (505)
.+
T Consensus 325 g~ 326 (362)
T KOG1013|consen 325 GG 326 (362)
T ss_pred cc
Confidence 44
No 166
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=4.1e-13 Score=113.09 Aligned_cols=99 Identities=25% Similarity=0.379 Sum_probs=85.9
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
+|.|++|++|+.. +.+||||++++++.. ++|+++.++.||.|||+|.|.+... .++.+.|+|||++. .++++
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~---~~~~~ 77 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR---GGKDD 77 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC---CCCCC
Confidence 5889999999763 478999999997644 6999999999999999999999765 34689999999984 67889
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
+||++.+++.++..+...+.|++|...
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 78 LLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred ceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999999888778899999754
No 167
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.49 E-value=1.7e-13 Score=117.55 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=80.3
Q ss_pred ceEEEEEeeecCCCC---C-CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccC
Q 038990 386 EVGKATEYGAKDLEG---K-HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRR 456 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~ 456 (505)
+..+|+|++|++|+. . +.+||||++++.. +.+||++++++.||+|||+|.|. +..... +..|.++|||++.
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 345899999999975 2 5789999999853 34599999999999999999993 432222 2379999999874
Q ss_pred CccCCCCCccEEEEEeccccccC--CEEeEEEEeC
Q 038990 457 GLRLRSKESLGYVDINLHDVLHN--GRLKEKYHLI 489 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~ 489 (505)
++++++||++.++|+++.-. ++...|.+|.
T Consensus 96 ---~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 96 ---YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred ---CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 77899999999999998654 4667787764
No 168
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.49 E-value=8.6e-14 Score=110.07 Aligned_cols=85 Identities=35% Similarity=0.597 Sum_probs=76.1
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|+|+|++|+||+..+..+.+||||++++++......+|+++.++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998878899999999998754344799999999999999999999877777789999999999988999
Q ss_pred cEEEE
Q 038990 344 LGMQV 348 (505)
Q Consensus 344 lG~~~ 348 (505)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 169
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.48 E-value=2.9e-13 Score=115.85 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=82.3
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEc---CeEEEeecccCCCCCccCceEEEEeeCC--CCCCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICR---GEQKKTKMIKKCRDPIWNEEFQFDFEEA--PLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~i~V~d~~~~~~ 459 (505)
..|.|++|++|+.. +.+||||++++. ....+|++++++.||+|||.|.|.+... ..+..|.++|||++.
T Consensus 18 L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~--- 94 (125)
T cd08386 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR--- 94 (125)
T ss_pred EEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC---
Confidence 48999999999753 579999999994 3456999999999999999999975321 123479999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++.+++||++.++++++......+.||.|.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 678899999999999998777778999985
No 170
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.48 E-value=1.6e-13 Score=117.02 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=81.8
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~~~ 459 (505)
..|+|++|+||+.. +.+||||++.+.. .+++|+++++ .||+|||+|.|. +..... +..|.++|++++.
T Consensus 18 L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~--- 93 (124)
T cd08389 18 LTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER--- 93 (124)
T ss_pred EEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC---
Confidence 48999999999763 5789999988743 3459999888 999999999998 654322 3479999999985
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
++++++||++.++|+++..+.....||+|.
T Consensus 94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 778999999999999998777789999985
No 171
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.48 E-value=1.7e-13 Score=122.31 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=83.7
Q ss_pred ceEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCC-C-CCCeEEEEEEEcc
Q 038990 386 EVGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEA-P-LKEKIHIEVKSKR 455 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~i~V~d~~ 455 (505)
....|+|++|++|+.. +.+||||++++.. ..++|++++++.||+|||.|.|.+... . .+..|.|+|||++
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d 106 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHD 106 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCC
Confidence 3458999999999864 5899999999842 456999999999999999999985322 1 2347999999998
Q ss_pred CCccCCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 456 RGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 456 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
. ++++++||++.++++++.......+||.+.+
T Consensus 107 ~---~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 107 K---LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred C---CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 4 6789999999999999887666788888864
No 172
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.48 E-value=4.7e-14 Score=122.43 Aligned_cols=111 Identities=18% Similarity=0.307 Sum_probs=87.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC------eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG------EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~ 457 (505)
..|+|.+|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+...... ..|.|+||+.+.
T Consensus 17 L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~- 95 (138)
T cd08408 17 LSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK- 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-
Confidence 48999999999763 5799999999953 135999999999999999999999754333 489999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
.+++++||++.+++...-. ....+|+.+..+++-.|. +|+++
T Consensus 96 --~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v~---~WH~l 137 (138)
T cd08408 96 --MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQVC---RWHTL 137 (138)
T ss_pred --CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEEe---Eeeec
Confidence 7789999999999875432 234689999876555554 77764
No 173
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.47 E-value=2.6e-13 Score=116.67 Aligned_cols=94 Identities=35% Similarity=0.497 Sum_probs=80.4
Q ss_pred EEEEEEeeccCccccC--CCCCCCcEEEEEECCee---cceeeeeeeCCCC-CCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 263 ILHVKVIRAIRLLKMD--IFGASDPYVQLSLSGER---IPAKKTSVKMKTL-NPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~-nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 56889999999985432 2346888887776 9999999999998766678999999999
Q ss_pred CCCCCcccEEEEEECccCCCC
Q 038990 337 KVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~ 357 (505)
.. ++++||++.++++++..+
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g 102 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG 102 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc
Confidence 87 899999999999999654
No 174
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.47 E-value=7.3e-14 Score=121.41 Aligned_cols=110 Identities=19% Similarity=0.368 Sum_probs=88.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
.+|.|.+|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+.....+ ..|.|+|||++.
T Consensus 17 l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 94 (136)
T cd08402 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR-- 94 (136)
T ss_pred EEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC--
Confidence 47899999999763 5799999999953 245899999999999999999998654332 379999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
++++++||++.+++... +....+|+++...+...+. +|+.|
T Consensus 95 -~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~~---~wh~~ 135 (136)
T cd08402 95 -IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPIA---QWHTL 135 (136)
T ss_pred -CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCeee---EEEEc
Confidence 67899999999999764 4456889999887666665 66543
No 175
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.47 E-value=9.2e-14 Score=120.75 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=85.4
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...+.|+|||++.
T Consensus 17 L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~-- 94 (136)
T cd08404 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 47899999999763 5889999999853 23589999999999999999999875432 2478999999985
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEe
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKA 504 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~ 504 (505)
++++++||++.+++.. ......+|++|.+.+.-.| .+|+.
T Consensus 95 -~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i---~~Wh~ 134 (136)
T cd08404 95 -VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI---AEWHM 134 (136)
T ss_pred -CCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee---eEEEe
Confidence 7789999999999998 3445678999876543223 25654
No 176
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.47 E-value=3.5e-13 Score=115.00 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=83.6
Q ss_pred EEEEEeeecCCCCC----CCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCcc
Q 038990 388 GKATEYGAKDLEGK----HHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLR 459 (505)
Q Consensus 388 a~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~ 459 (505)
..|.|.+|++|+.. +.+||||++++.. ..++|++++++.||+|||.|.|.+...... ..|.|+|||++.
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~--- 92 (123)
T cd08390 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR--- 92 (123)
T ss_pred EEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc---
Confidence 48999999999753 4789999999842 346899999999999999999998754332 479999999884
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLI 489 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 489 (505)
.+++++||++.++|+++........|++|.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 667899999999999999877778999985
No 177
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.46 E-value=7.2e-14 Score=120.99 Aligned_cols=103 Identities=20% Similarity=0.318 Sum_probs=83.6
Q ss_pred eEEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCC
Q 038990 387 VGKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~ 457 (505)
...|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.++|||++.
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~- 92 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI- 92 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 458999999999763 5799999999953 24599999999999999999999875433 2479999999874
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
.+++++||++.++++. .++...+||++...++-
T Consensus 93 --~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 93 --GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDK 125 (133)
T ss_pred --CCCccEEEEEEEecCC--CCchHHHHHHHHhCCCC
Confidence 6678999999999985 33455789999776543
No 178
>PLN03008 Phospholipase D delta
Probab=99.46 E-value=3.1e-13 Score=143.57 Aligned_cols=106 Identities=26% Similarity=0.492 Sum_probs=91.0
Q ss_pred eEEEEEEEeeccCccccCC------------------------------------------CCCCCcEEEEEECCeecce
Q 038990 261 VGILHVKVIRAIRLLKMDI------------------------------------------FGASDPYVQLSLSGERIPA 298 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~~ 298 (505)
.|.|.++|.+|++|+.+|. .+.+||||++.+++.+.
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv-- 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL-- 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce--
Confidence 5888999999998875321 24679999999986543
Q ss_pred eeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEeccccC
Q 038990 299 KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKNT 370 (505)
Q Consensus 299 ~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~ 370 (505)
.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..++..+.|++|....
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~ 160 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGAS 160 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccC
Confidence 58999999999999999999998754 58999999999986 589999999999999999999999997754
No 179
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.46 E-value=6e-13 Score=115.39 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=86.8
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCC
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVG 339 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~ 339 (505)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|.|.... ....+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~-~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLP-PVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCC-cccEEEEEEEEccCcc
Confidence 4578999999999998865 8999999998764 599999999999999999997644 3467999998765322
Q ss_pred ----CCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 340 ----THDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 340 ----~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
++++||++.||+.++..+...+.|+++...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~ 114 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTP 114 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence 678999999999999998888999998754
No 180
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=9.5e-14 Score=120.38 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=90.9
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+.. +.+||||++++.+. .++|++++++.||.|||+|.|.+..... ...|.|+|||.+.
T Consensus 16 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 93 (134)
T cd00276 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-- 93 (134)
T ss_pred EEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC--
Confidence 58999999999763 58999999999653 4599999999999999999999876532 3589999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEEeC
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWKAI 505 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~~~ 505 (505)
..++++||.+.+++++ .+...++||+|.++.+..+. +|++|
T Consensus 94 -~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~---~wh~~ 134 (134)
T cd00276 94 -VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA---RWHKL 134 (134)
T ss_pred -CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE---EeeeC
Confidence 5788999999999999 45566899999988766555 77764
No 181
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.44 E-value=2.1e-12 Score=106.86 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=75.8
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCC----cc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRG----LR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~----~~ 459 (505)
.|+|++|++|++ .+||||++++++ ...||+++++|.||+|||+|+|.+.. .+.|.+.|||++.. -.
T Consensus 2 ~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d~ 76 (118)
T cd08686 2 NVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLDG 76 (118)
T ss_pred EEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccccccc
Confidence 589999999975 699999999964 23699999999999999999999964 35899999998310 02
Q ss_pred CCCCCccEEEEEecc--ccccCCEEeEEEEeCCCCCceEEEEEE
Q 038990 460 LRSKESLGYVDINLH--DVLHNGRLKEKYHLINSKNGAVQVEIK 501 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~--~l~~~~~~~~~~~L~~~~~G~i~l~~~ 501 (505)
.+.|+.+|+..+.|+ .+..++....-+.|.+ =+|.++++
T Consensus 77 ~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~ 117 (118)
T cd08686 77 EGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIK 117 (118)
T ss_pred cCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEe
Confidence 467899977777775 3444333334455532 24444444
No 182
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.44 E-value=6.6e-13 Score=116.56 Aligned_cols=92 Identities=27% Similarity=0.477 Sum_probs=77.9
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcCe-----------------------------EEEeecccCCCCCccCceEE
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRGE-----------------------------QKKTKMIKKCRDPIWNEEFQ 435 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----------------------------~~kT~v~~~t~nP~wne~f~ 435 (505)
.+|+|++|++|.. .+.+||||++++... .++|++++++.||+|||+|.
T Consensus 30 L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~ 109 (153)
T cd08676 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFR 109 (153)
T ss_pred EEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEE
Confidence 4899999999975 368999999998531 25899999999999999999
Q ss_pred EEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 436 FDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 436 f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
|.+... .+..|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 110 f~v~~~-~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 110 FEVEDV-SNDQLHLDIWDHD-------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred EEeccC-CCCEEEEEEEecC-------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999765 3468999999884 6899999999999984 446899987
No 183
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.43 E-value=6.4e-13 Score=112.81 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=80.3
Q ss_pred EEeeecCCCCC---CCCCCEEEEEEcCeE-------EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCc-c
Q 038990 391 TEYGAKDLEGK---HHNNPYAVVICRGEQ-------KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGL-R 459 (505)
Q Consensus 391 ~v~~a~~L~~~---~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~-~ 459 (505)
..++|++|+.. +.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.+.++|||++... .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34688999753 578999999997653 6999999999999999999987543 3458999999998400 0
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCC
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLIN 490 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 490 (505)
.+++++||++.++++++..+.....|++|..
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 5688999999999999998776678999943
No 184
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.43 E-value=4.7e-13 Score=111.89 Aligned_cols=86 Identities=28% Similarity=0.361 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCC-
Q 038990 279 IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN- 357 (505)
Q Consensus 279 ~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~- 357 (505)
.+|.+||||+++++++.. ++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~~--~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEEE--EEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 468899999999987542 5888999999999999999999876678899999999988 899999999999998643
Q ss_pred CeeEEEEecc
Q 038990 358 ETKELTLDLV 367 (505)
Q Consensus 358 ~~~~~~l~l~ 367 (505)
.....|++|.
T Consensus 86 ~~~~~w~~L~ 95 (111)
T cd04052 86 SVGQQWFPLS 95 (111)
T ss_pred hccceeEECC
Confidence 3346777774
No 185
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.42 E-value=1.8e-13 Score=118.99 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=83.3
Q ss_pred EEEEEeeecCCCC---CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG---KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~ 458 (505)
..|+|++|++|+. .+.+||||++++.. ..++|++++++.||+|||.|.|.+..... +..|.|+|||++.
T Consensus 17 L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~-- 94 (136)
T cd08405 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC--
Confidence 4899999999975 35899999999832 23589999999999999999999864322 3479999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQ 497 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 497 (505)
.+.+++||++.+++.+. +....+|+++...+...+.
T Consensus 95 -~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~ 130 (136)
T cd08405 95 -LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVA 130 (136)
T ss_pred -CCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchh
Confidence 67889999999999875 3445788888766544443
No 186
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.41 E-value=3.7e-13 Score=116.68 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=83.6
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+.. +.+||||++++.. ..++|+++++|.||+|||+|.|.+......+ .|.|+|||++.
T Consensus 16 L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-- 93 (135)
T cd08410 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-- 93 (135)
T ss_pred EEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC--
Confidence 48999999999763 5899999999832 2469999999999999999999996543433 79999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
.+++++||++.++...... ....+|+.+.+..+-.|. +|+
T Consensus 94 -~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~~~~~~~---~wh 133 (135)
T cd08410 94 -KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNSQRTAVE---QWH 133 (135)
T ss_pred -CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhCCCCEee---Eee
Confidence 6789999999876643322 235789999876544443 554
No 187
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.40 E-value=1.4e-12 Score=111.24 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=74.3
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE--EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ--KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
+|.|++|++|+.. +.+||||++++++.. .+|++++++.||+|||+|.|.+..+ ..+.|.++|||++. .+.+
T Consensus 3 rV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~---~~~d 78 (124)
T cd04037 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL---LGSD 78 (124)
T ss_pred EEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC---CCCC
Confidence 6899999999753 589999999998765 4788899999999999999998654 34689999999984 6789
Q ss_pred CccEEEEEecccccc
Q 038990 464 ESLGYVDINLHDVLH 478 (505)
Q Consensus 464 ~~lG~~~i~L~~l~~ 478 (505)
++||++.++|++...
T Consensus 79 d~iG~~~i~l~~~~~ 93 (124)
T cd04037 79 DLIGETVIDLEDRFF 93 (124)
T ss_pred ceeEEEEEeeccccc
Confidence 999999999998764
No 188
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.40 E-value=5.7e-12 Score=108.24 Aligned_cols=106 Identities=22% Similarity=0.318 Sum_probs=86.4
Q ss_pred EEEEeeecCCCC-----CCCCCCEEEEEEc------CeEEEeecccCCC-CCccCceEEEEeeCCCCCCeEEEEEEEccC
Q 038990 389 KATEYGAKDLEG-----KHHNNPYAVVICR------GEQKKTKMIKKCR-DPIWNEEFQFDFEEAPLKEKIHIEVKSKRR 456 (505)
Q Consensus 389 ~v~v~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~i~V~d~~~ 456 (505)
+|+|++|++|+. .+.+||||++++. ....+|++++++. ||+|||+|.|.+..+. ...|.++|||++.
T Consensus 5 ~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~~~ 83 (128)
T cd00275 5 TIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDEDS 83 (128)
T ss_pred EEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeCCC
Confidence 789999999974 3578999999994 3456999988775 9999999999998653 3479999999984
Q ss_pred CccCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEE
Q 038990 457 GLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKW 502 (505)
Q Consensus 457 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~ 502 (505)
. ++++||++.++++++..+ .+|++|.+. ..|.|.++++.
T Consensus 84 ---~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 84 ---G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred ---C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 4 889999999999998544 478999753 26889888875
No 189
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.39 E-value=4.6e-12 Score=107.02 Aligned_cols=97 Identities=27% Similarity=0.386 Sum_probs=75.4
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC--CCEEEEEEEEcCCCCCC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE--TQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~--~~~L~v~v~d~d~~~~d 341 (505)
|+|+|++|++|+.. +.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+..+++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998754 258888888 99999999999996532 34677888888766556
Q ss_pred cccEEEEEECccCCCCCeeEEEEeccc
Q 038990 342 DKLGMQVVPLRSLTPNETKELTLDLVK 368 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~l~l~~ 368 (505)
..+|+ +++..+..+...+.|++|..
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~ 100 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTP 100 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECcc
Confidence 56665 45555555666778888754
No 190
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.38 E-value=1.9e-12 Score=111.95 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=75.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-------eEEEeecccCCCCCccCceEEEEeeCCC---CCCeEEEEEEEc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-------EQKKTKMIKKCRDPIWNEEFQFDFEEAP---LKEKIHIEVKSK 454 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~i~V~d~ 454 (505)
.+|+|.+|++|+.. +.+||||++++.+ ..++|+++++|.||+|||+|.|.+...+ .+..|.|+|||+
T Consensus 18 L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~ 97 (133)
T cd04009 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97 (133)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEec
Confidence 48999999999763 5899999999953 3469999999999999999999997532 235899999999
Q ss_pred cCCccCCCCCccEEEEEeccccccC
Q 038990 455 RRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 455 ~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
+. .+++++||++.++|+++..-
T Consensus 98 d~---~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 98 DL---LGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CC---CCCCcEeEEEEEeHHHCCcc
Confidence 84 67799999999999998863
No 191
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.38 E-value=8e-13 Score=114.53 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=82.0
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~ 458 (505)
.+|+|++|++|+.. +.+||||++++.. ..++|++++++.||.|||+|.|.+...... ..|.|+|||++.
T Consensus 16 L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-- 93 (134)
T cd08403 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-- 93 (134)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 48999999999863 5899999999842 245899999999999999999998654333 369999999984
Q ss_pred cCCCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEE
Q 038990 459 RLRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQ 497 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 497 (505)
.+++++||++.+++... +....+|+++...+.-.+.
T Consensus 94 -~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~~~~~~~ 129 (134)
T cd08403 94 -VGHNELIGVCRVGPNAD--GQGREHWNEMLANPRKPIA 129 (134)
T ss_pred -CCCCceeEEEEECCCCC--CchHHHHHHHHHCCCCeee
Confidence 67899999999998732 3344688888765444443
No 192
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=2.2e-12 Score=149.51 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=92.6
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEcC
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDWE 336 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~d 336 (505)
+.-.|.|+|+|++|.||. +..|.+||||++.++++.. +||++++++.||+|||+|.|.+.++. ++.++++|||+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 345799999999999998 4468999999999996532 58999999999999999999998764 467999999999
Q ss_pred CCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 337 KVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 337 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
.+++ +.+|.+.+++.++..+.....|++|.++
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~ 2083 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPE 2083 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecCcc
Confidence 9855 4999999999999988888888888753
No 193
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.34 E-value=1e-11 Score=105.67 Aligned_cols=95 Identities=31% Similarity=0.336 Sum_probs=80.4
Q ss_pred EEEEEeeccCccccC--CCC--CCCcEEEEEECCeecceeeeeeeCCCCC--CeEceeEEEEeecC--------------
Q 038990 264 LHVKVIRAIRLLKMD--IFG--ASDPYVQLSLSGERIPAKKTSVKMKTLN--PEWNEDFKLTVKDP-------------- 323 (505)
Q Consensus 264 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~l~~~~~~~~~T~~~~~t~n--P~wne~f~~~v~~~-------------- 323 (505)
|+|.|.+|++++..+ ..| .+||||+..+.+....+++|.+..+++| |.||+.|.|.+.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCC
Q 038990 324 ---------ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 324 ---------~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~ 358 (505)
....|.++|||.|.+++|++||++.++|+.+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24679999999999999999999999999888664
No 194
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=8.8e-12 Score=127.52 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=97.1
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcCeE---EEeecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCccC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRGEQ---KKTKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~~ 460 (505)
.+|+|.+|++|+.. +.+||||++++..++ .+|++.++|+||+|||+|.|.+....+ ...|.++|||.+. +
T Consensus 169 L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr---f 245 (421)
T KOG1028|consen 169 LTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR---F 245 (421)
T ss_pred EEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC---c
Confidence 38999999999864 468999999997654 499999999999999999999765433 4589999999994 8
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeCCC------CCceEEEEEEEEeC
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLINS------KNGAVQVEIKWKAI 505 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~~~~~ 505 (505)
++++++|.+.++|..+........|.++... ..|+|.+++.|.|.
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence 9999999999999888776666789999753 14799999999873
No 195
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=1.8e-11 Score=99.50 Aligned_cols=97 Identities=43% Similarity=0.662 Sum_probs=82.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
+.|+|++|++|......+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999988765678999999998652223689999999999999999999977657899999999998778999
Q ss_pred cEEEEEECccCCCCCee
Q 038990 344 LGMQVVPLRSLTPNETK 360 (505)
Q Consensus 344 lG~~~i~l~~l~~~~~~ 360 (505)
+|.+.+++.++..+..+
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999998776543
No 196
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=2e-11 Score=101.96 Aligned_cols=93 Identities=20% Similarity=0.446 Sum_probs=72.8
Q ss_pred EEEeeecCCCCC---CCCCCEEEEEEcCe------EEEeecccCCCCCccCceEEEEeeCC---CCCCeEEEEEEEccCC
Q 038990 390 ATEYGAKDLEGK---HHNNPYAVVICRGE------QKKTKMIKKCRDPIWNEEFQFDFEEA---PLKEKIHIEVKSKRRG 457 (505)
Q Consensus 390 v~v~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~i~V~d~~~~ 457 (505)
+..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+... .....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345689999764 58999999998653 3699999999999999 688876432 124689999999984
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEe
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHL 488 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 488 (505)
.+++++||++.++++++..+. .++|.+
T Consensus 82 --~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 --SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred --CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 678999999999999998543 344544
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.9e-12 Score=128.52 Aligned_cols=102 Identities=27% Similarity=0.443 Sum_probs=88.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcC
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWE 336 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d 336 (505)
..+....++++|++|.+|..+|..|++||||...++..+ +||+++...+||+|||.|.|.+++ .++.++++|||.|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCc
Confidence 456788999999999999999999999999999999665 589999999999999999999987 5688999999988
Q ss_pred CC-----------CCCcccEEEEEECccCCCCCeeEE
Q 038990 337 KV-----------GTHDKLGMQVVPLRSLTPNETKEL 362 (505)
Q Consensus 337 ~~-----------~~d~~lG~~~i~l~~l~~~~~~~~ 362 (505)
.- ..|||+|+..|.++.+......|+
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgemdvwy 402 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWY 402 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccchhhhc
Confidence 32 468999999999988876544433
No 198
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.25 E-value=5.1e-11 Score=101.61 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=73.2
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeC-CCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEE-APL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-~~~-~~~l~i~V~d~~~~ 457 (505)
.+|+|.+|++|+.. +.+||||++++.+ ..++|++++++.||+|||.|.|.... ... +..+.++|||++.
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~- 95 (123)
T cd04035 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR- 95 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-
Confidence 47999999999753 5789999999842 34699999999999999999996322 112 3589999999974
Q ss_pred ccCCCCCccEEEEEeccccccCCE
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGR 481 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~ 481 (505)
. ++++||++.++|+++..++.
T Consensus 96 --~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 96 --F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred --c-CCeeEEEEEEEcccCCCCcc
Confidence 5 78999999999999987653
No 199
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=4.8e-11 Score=96.72 Aligned_cols=100 Identities=43% Similarity=0.647 Sum_probs=83.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcc
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDK 343 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~ 343 (505)
|.|++++|++|......+..+|||.+++.+. ...+|+++.++.||.|||.|.|.+.......+.++|||.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4689999999988766678999999999872 23689999999999999999999976456789999999998878899
Q ss_pred cEEEEEECccCC-CCCeeEEEEe
Q 038990 344 LGMQVVPLRSLT-PNETKELTLD 365 (505)
Q Consensus 344 lG~~~i~l~~l~-~~~~~~~~l~ 365 (505)
+|++.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999988 5444455553
No 200
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.20 E-value=2.7e-11 Score=128.53 Aligned_cols=92 Identities=29% Similarity=0.422 Sum_probs=82.7
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
.-.++|.+++|-+|.+.|.+|.+|||+++.+++.... .++..+.+|+||+|++.|++....+....+.++|||+|..++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~-d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTL-DRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhh-hhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 3466799999999999999999999999999976543 367889999999999999999988888889999999999999
Q ss_pred CcccEEEEEECcc
Q 038990 341 HDKLGMQVVPLRS 353 (505)
Q Consensus 341 d~~lG~~~i~l~~ 353 (505)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999864
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.17 E-value=6.7e-11 Score=93.33 Aligned_cols=78 Identities=32% Similarity=0.576 Sum_probs=67.6
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcC---eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRG---EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
+|+|++|++|+. .+.+|||+++++++ ..++|++++++.+|.|+|.|.|.+..+.. +.|.|+|||++. .+.
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~-~~l~~~V~~~~~---~~~ 77 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDL-DSLSFEVWDKDS---FGK 77 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCG-TEEEEEEEEETS---SSS
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccc-cceEEEEEECCC---CCC
Confidence 689999999987 35899999999987 66899999999999999999999877644 469999999985 566
Q ss_pred CCccEEEE
Q 038990 463 KESLGYVD 470 (505)
Q Consensus 463 d~~lG~~~ 470 (505)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999873
No 202
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.15 E-value=1.9e-10 Score=92.01 Aligned_cols=85 Identities=21% Similarity=0.447 Sum_probs=72.8
Q ss_pred HHHHHhhCh-hhH-HHHHHHHHHHHHHHHHh-ccCcceeeEEEEeEEecCCCCCeEeEEEEEEc-CCceEEEeeeEEEeC
Q 038990 76 NKFVSDLWP-YLD-KAICSTARSNLEPIFAE-YIGKYCIRSVDFKTLTLGTLPPIIHGIKVCET-NENELILEPALRWAG 151 (505)
Q Consensus 76 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~~ 151 (505)
|.+++|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++++.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777554 333 78889999999999998 67998 99999999999999999999999874 455699999999999
Q ss_pred CCcEEEEEEE
Q 038990 152 NPNITLALKF 161 (505)
Q Consensus 152 ~~~i~l~~~~ 161 (505)
+..+.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999988765
No 203
>PLN02223 phosphoinositide phospholipase C
Probab=99.13 E-value=2.6e-10 Score=116.98 Aligned_cols=99 Identities=26% Similarity=0.444 Sum_probs=82.5
Q ss_pred eEEEEEEEeeccCcccc-----CCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKM-----DIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY 333 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~-----d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~ 333 (505)
...|.|+|++|.+++.. +.....||||+|.+.|.. ..+++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46899999999987521 222457999999996532 23457888899999999999999999988888999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCCe
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
|+|..++|+++|++.+|+..+..+-.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR 513 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIR 513 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCce
Confidence 99988899999999999999998843
No 204
>PLN02270 phospholipase D alpha
Probab=99.09 E-value=9.8e-10 Score=117.29 Aligned_cols=111 Identities=18% Similarity=0.349 Sum_probs=94.2
Q ss_pred EEEEeeecCCCC---------------------CCCCCCEEEEEEcCeEE-EeecccCC-CCCccCceEEEEeeCCCCCC
Q 038990 389 KATEYGAKDLEG---------------------KHHNNPYAVVICRGEQK-KTKMIKKC-RDPIWNEEFQFDFEEAPLKE 445 (505)
Q Consensus 389 ~v~v~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~ 445 (505)
.++|.+|++|+. ++.+||||.+.+.+.+. +|+++.+. .||+|||+|...|... ..
T Consensus 11 ~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~--~~ 88 (808)
T PLN02270 11 HATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM--AS 88 (808)
T ss_pred EEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC--cc
Confidence 577788887752 24679999999988775 99999985 6999999999999875 36
Q ss_pred eEEEEEEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC------CceEEEEEEEEeC
Q 038990 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK------NGAVQVEIKWKAI 505 (505)
Q Consensus 446 ~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~~~~~ 505 (505)
.+.|+|.|.+ .-+..+||.+.++..+++.+..+++||++.+.. ..+|+++++|.|+
T Consensus 89 ~v~f~vkd~~----~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 89 NIIFTVKDDN----PIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred eEEEEEecCC----ccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 8999999987 456679999999999999999999999998642 4599999999985
No 205
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.06 E-value=9.3e-11 Score=124.53 Aligned_cols=83 Identities=16% Similarity=0.328 Sum_probs=72.7
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcCeEE--EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCC
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRGEQK--KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSK 463 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~--kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d 463 (505)
+|++.+|-+|.. +|.+|||+++.++++.. +...+.+|.||+|++.|++.+..+ ....++++|||++. .++|
T Consensus 616 rVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~---~~~d 691 (1105)
T KOG1326|consen 616 RVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL---EAQD 691 (1105)
T ss_pred EEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec---cccc
Confidence 688889998864 46899999999998874 888899999999999999999876 55689999999995 7889
Q ss_pred CccEEEEEeccc
Q 038990 464 ESLGYVDINLHD 475 (505)
Q Consensus 464 ~~lG~~~i~L~~ 475 (505)
+.+|..+++|++
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999974
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.05 E-value=1.8e-09 Score=87.39 Aligned_cols=96 Identities=29% Similarity=0.495 Sum_probs=80.6
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEcC-eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICRG-EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.|.|++|+++.. .+.++|||.+++.+ ...+|+++.++.||.||+.|.|.+... ....+.++|++.+. ...+.
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~---~~~~~ 77 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR---FSKDD 77 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC---CCCCc
Confidence 478999999965 35899999999988 778999999999999999999999763 24689999999984 45689
Q ss_pred ccEEEEEeccccc-cCCEEeEEEEe
Q 038990 465 SLGYVDINLHDVL-HNGRLKEKYHL 488 (505)
Q Consensus 465 ~lG~~~i~L~~l~-~~~~~~~~~~L 488 (505)
++|++.+++.++. .......|++|
T Consensus 78 ~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 78 FLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eeEEEEEeHHHhhhcCCcCcceecC
Confidence 9999999999998 55555677764
No 207
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.8e-10 Score=115.33 Aligned_cols=108 Identities=25% Similarity=0.490 Sum_probs=88.5
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc------
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR------ 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~------ 459 (505)
+++|..|++|-.+ |.+||||.+.++..+++|+++...+||+|||.|+|.+++. .+.|.+.|||.+..+.
T Consensus 298 tltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 298 TLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred EEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCcccHHHHHHHH
Confidence 7889999999653 6899999999999999999999999999999999999986 4689999999875311
Q ss_pred --CCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEE
Q 038990 460 --LRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEI 500 (505)
Q Consensus 460 --~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~ 500 (505)
..+|++||+..|.+..+- +.++-||.|... -+|-|++.+
T Consensus 376 l~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred hhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEE
Confidence 247899999999887664 356899999753 257665544
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.9e-09 Score=87.46 Aligned_cols=88 Identities=34% Similarity=0.610 Sum_probs=75.6
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCe---EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGE---QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~ 462 (505)
.+.|++|++|... +..+|||++++.+. ..+|+.+.++.||.|||.|.|.+.... ...|.++||+++. .+.
T Consensus 3 ~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~---~~~ 78 (101)
T smart00239 3 TVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR---FGR 78 (101)
T ss_pred EEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC---ccC
Confidence 5789999999764 36899999999875 679999999999999999999998753 5689999999985 456
Q ss_pred CCccEEEEEeccccccCC
Q 038990 463 KESLGYVDINLHDVLHNG 480 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~~ 480 (505)
+.++|.+.+++.++..+.
T Consensus 79 ~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CceeEEEEEEHHHcccCc
Confidence 899999999999987754
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.01 E-value=1.5e-09 Score=92.41 Aligned_cols=89 Identities=18% Similarity=0.327 Sum_probs=74.2
Q ss_pred EEEEeeecCCCC-----CC--CCCCEEEEEEcC---eEEEeecccCCCC--CccCceEEEEeeCCCC-------------
Q 038990 389 KATEYGAKDLEG-----KH--HNNPYAVVICRG---EQKKTKMIKKCRD--PIWNEEFQFDFEEAPL------------- 443 (505)
Q Consensus 389 ~v~v~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------- 443 (505)
+|.|.+|++++. .| .+||||+..+.+ ++++|.+.+++.| |.||+.|.|.+..++.
T Consensus 3 RViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~ 82 (133)
T cd08374 3 RVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFW 82 (133)
T ss_pred EEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecccc
Confidence 688999999643 23 599999999976 3479999999999 9999999999876321
Q ss_pred ---------CCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC
Q 038990 444 ---------KEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 444 ---------~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 480 (505)
...|.++|||++. +++|++||.+.++|..+....
T Consensus 83 ~~~~~e~~~~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 83 SLDETEYKIPPKLTLQVWDNDK---FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccCcceEecCcEEEEEEEECcc---cCCCCcceEEEEEhhhccccc
Confidence 2479999999995 889999999999999888754
No 210
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.93 E-value=3.9e-09 Score=110.52 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=81.8
Q ss_pred eEEEEEEEeeccCcccc------CCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKM------DIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v 332 (505)
...|.|+|+.+.+++.. +.....||||++.+-+.. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987521 112346999999985422 2246888999999999999999999988888999999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
+|+|..++|+++|++.+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998844
No 211
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=4.9e-09 Score=110.01 Aligned_cols=104 Identities=24% Similarity=0.380 Sum_probs=84.0
Q ss_pred eEEEEEEEeeccCcccc--C----CCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKM--D----IFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~--d----~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v 332 (505)
...|.|+|++|.+++.. + .....||||++.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987532 1 1123599999998652 12346899999999999999999999888777899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
||+|..+.++++|++.+|++.|..+-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998853 55654
No 212
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.91 E-value=3.8e-09 Score=108.83 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=96.5
Q ss_pred EEEEeeecCCCCC---CCCCCEEEEEEcCeE-EEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 389 KATEYGAKDLEGK---HHNNPYAVVICRGEQ-KKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 389 ~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.|.|.+|+||+.. |..||||.+.+.... .+|.++.+|+.|.|.|.|.|.++.. -+.+.|-|||++ +++|+
T Consensus 8 ~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~--F~~l~fYv~D~d----~~~D~ 81 (800)
T KOG2059|consen 8 KVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT--FRYLSFYVWDRD----LKRDD 81 (800)
T ss_pred eEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc--eeeEEEEEeccc----ccccc
Confidence 6889999999875 589999999998876 4999999999999999999999653 358999999998 78999
Q ss_pred ccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEEe
Q 038990 465 SLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
.||.+.|.=.++......+.||.|... -+|+|++++++.+
T Consensus 82 ~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 999999999998887777999999743 2899999998764
No 213
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.91 E-value=8.9e-10 Score=113.24 Aligned_cols=100 Identities=30% Similarity=0.472 Sum_probs=87.3
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeeeCCCCCCeEceeEEEEeecC----CCCEE
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVKMKTLNPEWNEDFKLTVKDP----ETQVL 328 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~~L 328 (505)
+......|.|.|+.|+++.+-|.+|.|||||++.+.+.. ...++|+++.+|+||+|+|+|+|.+... +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 455667899999999999999999999999999998754 2357999999999999999999999732 24579
Q ss_pred EEEEEEcCCCCCCcccEEEEEECccCCC
Q 038990 329 QLHVYDWEKVGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 329 ~v~v~d~d~~~~d~~lG~~~i~l~~l~~ 356 (505)
.|+|+|+|..+.+||-|++.+.|.++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988763
No 214
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.87 E-value=5.2e-09 Score=109.56 Aligned_cols=98 Identities=28% Similarity=0.466 Sum_probs=82.4
Q ss_pred EEEEEEeeccCccccCC----CCCCCcEEEEEECCee--cceeeee-eeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 263 ILHVKVIRAIRLLKMDI----FGASDPYVQLSLSGER--IPAKKTS-VKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~----~g~~dpyv~v~l~~~~--~~~~~T~-~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
.|.|+|+++.++++... ...+||||.+.+-|-. ....+|+ +..++-||.|+|+|+|.+..|+-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997765432 2357999999986532 2245788 677899999999999999999888999999999
Q ss_pred CCCCCCcccEEEEEECccCCCCCee
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETK 360 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~ 360 (505)
|..++|||+|+..+|+.+|..|-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999988544
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=98.87 E-value=2.4e-08 Score=102.77 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=85.2
Q ss_pred EEEEEeeecCCCC--------CCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEc
Q 038990 388 GKATEYGAKDLEG--------KHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454 (505)
Q Consensus 388 a~v~v~~a~~L~~--------~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 454 (505)
.+|+|+.|++++. ...+||||+|.+.|. .++|++..++.||+|||+|+|.+..+++ ..|.|+|+|+
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL-AlLrf~V~D~ 489 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL-ALISFEVYDY 489 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc-eEEEEEEEec
Confidence 4889999998641 125799999999652 3578777789999999999999998754 4799999999
Q ss_pred cCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 455 RRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 455 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
+. ...++++|+..+|++.+..+- +..+|.+.. .-.|-++++|
T Consensus 490 D~---~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EV---STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred CC---CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 84 567899999999999998765 667886542 4566666665
No 216
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.86 E-value=1.1e-08 Score=107.02 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=80.8
Q ss_pred eEEEEEEEeeccCcc----ccC--CCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEE
Q 038990 261 VGILHVKVIRAIRLL----KMD--IFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~----~~d--~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v 332 (505)
...|.|+|+.+.+++ ... .....||||++.+.+-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 111 12346999999986421 2346899999999999999999999888878899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
||+|..+.|+++|++.+|+..|..|-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998843
No 217
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.80 E-value=1.6e-08 Score=80.90 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=69.7
Q ss_pred EEEEEeeccCccccC---CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCC
Q 038990 264 LHVKVIRAIRLLKMD---IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGT 340 (505)
Q Consensus 264 L~V~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~ 340 (505)
|.|+|.+|+|+.-.+ ..+.+||||.+.+++... .||+. +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~k--aRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVER--ARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEE--EeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 578999999998877 567899999999998752 46765 589999999999994 46789999999853 45
Q ss_pred CcccEEEEEECccCCCC
Q 038990 341 HDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 341 d~~lG~~~i~l~~l~~~ 357 (505)
.-.+|..-+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56788888888777643
No 218
>PLN02228 Phosphoinositide phospholipase C
Probab=98.79 E-value=2.5e-08 Score=104.13 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=80.2
Q ss_pred EEEEEEEeeccCccc---cC---CCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeE-ceeEEEEeecCCCCEEEEEE
Q 038990 262 GILHVKVIRAIRLLK---MD---IFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEW-NEDFKLTVKDPETQVLQLHV 332 (505)
Q Consensus 262 g~L~V~v~~a~~L~~---~d---~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~w-ne~f~~~v~~~~~~~L~v~v 332 (505)
..|+|+|++|.+|+. .+ .....||||++.+.+- ...+++|++++++.||.| ||+|.|.+..++-.-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 1234799999998643 223468999988999999 99999999988878899999
Q ss_pred EEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 333 YDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 333 ~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
+|+|..+.|+++|++.+|++.|..+-.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 999988899999999999999988733
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.73 E-value=1.2e-07 Score=99.83 Aligned_cols=97 Identities=23% Similarity=0.274 Sum_probs=79.5
Q ss_pred EEEEEeeecCCCC--C-------CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEG--K-------HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
..|.|+.|++++. . ...||||++.+.+ .+++|+++.++.||+|||+|+|.+..+++ ..+.|+|+|
T Consensus 472 L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~V~D 550 (599)
T PLN02952 472 LKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIEVRE 550 (599)
T ss_pred EEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEEEEe
Confidence 4789999988642 1 1359999999865 34699999999999999999999988743 479999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
++. .+.++++|+..++++.|..+. +|.+|.+.
T Consensus 551 ~D~---~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 551 YDM---SEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred cCC---CCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 874 567899999999999998876 68899754
No 220
>PLN02270 phospholipase D alpha
Probab=98.73 E-value=6.1e-08 Score=103.82 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=88.6
Q ss_pred eEEEEEEEeeccCccccC------------------CCCCCCcEEEEEECCeecceeeeeeeCCC-CCCeEceeEEEEee
Q 038990 261 VGILHVKVIRAIRLLKMD------------------IFGASDPYVQLSLSGERIPAKKTSVKMKT-LNPEWNEDFKLTVK 321 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~wne~f~~~v~ 321 (505)
.|.|.|+|.+|++|+..+ ..+.+|||+.+.+++.++ .||+++.+. .||.|+|+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 589999999999998631 124679999999998775 599999885 59999999999997
Q ss_pred cCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 322 DPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 322 ~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
... ..+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++...
T Consensus 85 h~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~ 130 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDN 130 (808)
T ss_pred cCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCC
Confidence 654 679999999998765 5999999999999999888888887653
No 221
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.68 E-value=6.7e-08 Score=100.81 Aligned_cols=95 Identities=28% Similarity=0.470 Sum_probs=81.4
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEECCeec---ceeeeeeeCCCCCCeEc-eeEEEEeecCCCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERI---PAKKTSVKMKTLNPEWN-EDFKLTVKDPETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~wn-e~f~~~v~~~~~~~L~v~v~d~d~ 337 (505)
-.|.|.|+.|++|+... .|-..|||.+.+-|... ..++|.+..|++||+|| |+|.|.+.+|+-.-|+|.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57889999999999554 34567999999865332 23577788999999999 999999999998999999999999
Q ss_pred CCCCcccEEEEEECccCCCC
Q 038990 338 VGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~~ 357 (505)
++...|||++.+|+..+..+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cCCcceeeeeecchhhhhcc
Confidence 99888999999999998876
No 222
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.67 E-value=1.5e-07 Score=96.16 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=119.5
Q ss_pred eeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCC----CCCcccEEEEEECccCCCCCeeEEEEeccccCCCCC
Q 038990 299 KKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKV----GTHDKLGMQVVPLRSLTPNETKELTLDLVKNTNPND 374 (505)
Q Consensus 299 ~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~----~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 374 (505)
.+|.++.+.+||.|.+.|.+.......|.++++++|.+.. ...+++|++...+.++........-+.+..... ..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~-~~ 121 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN-AG 121 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc-CC
Confidence 4899999999999999999888877789999999998743 467899999999998886544322222211100 00
Q ss_pred ccccccccccc-----ceEEEEEeeecCCCCC---CCCCCEEEEEEc--Ce----EEEeecccCCCCCccCceEEEEeeC
Q 038990 375 PQDKKFERKES-----EVGKATEYGAKDLEGK---HHNNPYAVVICR--GE----QKKTKMIKKCRDPIWNEEFQFDFEE 440 (505)
Q Consensus 375 ~~~~~~~g~~~-----~~a~v~v~~a~~L~~~---~~~dpyv~v~~~--~~----~~kT~v~~~t~nP~wne~f~f~v~~ 440 (505)
........+ +....-..+|++|..+ +.+|||..++-. .. .++|.+++++.||.|.+ |......
T Consensus 122 --~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~ 198 (529)
T KOG1327|consen 122 --SGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQS 198 (529)
T ss_pred --cccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhh
Confidence 000000011 1112334457788764 589999999853 21 24999999999999998 4444332
Q ss_pred CC---CCCeEEEEEEEccCCccCCCCCccEEEEEecccccc
Q 038990 441 AP---LKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLH 478 (505)
Q Consensus 441 ~~---~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~ 478 (505)
.+ .+..+.+.+||++. .++++++|.+..+++++..
T Consensus 199 l~~~~~~~~~~i~~~d~~~---~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 199 LCSKDGNRPIQIECYDYDS---NGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred hcccCCCCceEEEEeccCC---CCCcCceeEecccHHHhcc
Confidence 21 23578999999985 5677999999999999864
No 223
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.67 E-value=2.8e-09 Score=109.61 Aligned_cols=87 Identities=24% Similarity=0.381 Sum_probs=71.3
Q ss_pred EEEEeeecCC---CCCCCCCCEEEEEEcCeE-------EEeecccCCCCCccCceEEEEeeCC-CC--CCeEEEEEEEcc
Q 038990 389 KATEYGAKDL---EGKHHNNPYAVVICRGEQ-------KKTKMIKKCRDPIWNEEFQFDFEEA-PL--KEKIHIEVKSKR 455 (505)
Q Consensus 389 ~v~v~~a~~L---~~~~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~-~~--~~~l~i~V~d~~ 455 (505)
.|.|+.|+++ ..+|.+||||.+.+..+. ++|+|+++|+||+|+|+|+|.|+.. +. ...+.++|+|++
T Consensus 950 ~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD 1029 (1103)
T KOG1328|consen 950 VVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHD 1029 (1103)
T ss_pred hhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccc
Confidence 3555667775 346899999999998753 5999999999999999999999643 33 237999999998
Q ss_pred CCccCCCCCccEEEEEecccccc
Q 038990 456 RGLRLRSKESLGYVDINLHDVLH 478 (505)
Q Consensus 456 ~~~~~~~d~~lG~~~i~L~~l~~ 478 (505)
- ...++|-|..-+.|.++..
T Consensus 1030 ~---L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1030 Y---LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred e---ecccccchHHHHhhCCCCC
Confidence 4 7889999999999988765
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.62 E-value=3.6e-07 Score=95.85 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=84.2
Q ss_pred EEEEEeeecCCC----C-----CCCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLE----G-----KHHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~----~-----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
..|+|+.+++++ . ....||||++.+.+ .+++|+++.++.||+|||.|+|.+..+++ ..+.|.|+|
T Consensus 454 L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL-AllRf~V~d 532 (581)
T PLN02222 454 LRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL-ALLRLEVHE 532 (581)
T ss_pred EEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce-eEEEEEEEE
Confidence 378889887642 1 12579999999964 34699999999999999999999988754 489999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
++. ...++++|+..++++.|..+- +..+|.+.. ...+-+.++|
T Consensus 533 ~D~---~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDM---SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred CCC---CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 874 567899999999999998765 566776543 3466666665
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.61 E-value=2.2e-07 Score=74.45 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=66.7
Q ss_pred EEEEeeecCCCC------CCCCCCEEEEEEcCe-EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCC
Q 038990 389 KATEYGAKDLEG------KHHNNPYAVVICRGE-QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLR 461 (505)
Q Consensus 389 ~v~v~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~ 461 (505)
+|+|+.|+|+.. .+.++|||.+.+++. +.+|++ +.||.|||.|.|.+.+ ...+.+.|||+. ..
T Consensus 2 ~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~----~~ 71 (109)
T cd08689 2 TITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKG----GD 71 (109)
T ss_pred EEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCC----CC
Confidence 588999999953 357899999999887 458887 5899999999999943 358999999986 33
Q ss_pred CCCccEEEEEeccccccC
Q 038990 462 SKESLGYVDINLHDVLHN 479 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~ 479 (505)
..--+|-..+.++++.+.
T Consensus 72 ~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 72 QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred eecceeeehhhHHHHHHH
Confidence 456899999999998763
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.60 E-value=3.2e-07 Score=96.34 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=84.8
Q ss_pred EEEEEeeecCCCC--C-------CCCCCEEEEEEcC-----eEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEE
Q 038990 388 GKATEYGAKDLEG--K-------HHNNPYAVVICRG-----EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKS 453 (505)
Q Consensus 388 a~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d 453 (505)
..|.|+.+++++. . ...||||++.+.+ .+++|++..++.||+|||+|+|.+..+++ ..|.|+|+|
T Consensus 471 L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL-AllRf~V~d 549 (598)
T PLN02230 471 LKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL-ALLRVEVHE 549 (598)
T ss_pred EEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce-eEEEEEEEE
Confidence 4789999997631 1 2479999999965 23588988899999999999999988754 489999999
Q ss_pred ccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEE
Q 038990 454 KRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKW 502 (505)
Q Consensus 454 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~ 502 (505)
++. ..+++++|+..++++.|..+- +..+|.+.. .-.|-++++|
T Consensus 550 ~d~---~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDI---NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred CCC---CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 984 568999999999999998765 456776543 3466666665
No 227
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.52 E-value=7.6e-07 Score=93.69 Aligned_cols=110 Identities=20% Similarity=0.305 Sum_probs=86.5
Q ss_pred EEEEEeeecCCCCC-------CCCCCEEEEEEcCe-----EEEeec-ccCCCCCccCceEEEEeeCCCCCCeEEEEEEEc
Q 038990 388 GKATEYGAKDLEGK-------HHNNPYAVVICRGE-----QKKTKM-IKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454 (505)
Q Consensus 388 a~v~v~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~v-~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 454 (505)
..|.|+.+++.... ..+||||.+.+.|- .++|++ ..++-||.|+|+|+|.+..|++ ..|.+.|+|+
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d~ 696 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHDY 696 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEec
Confidence 58999999966431 36899999998764 358994 4568999999999999999865 4899999999
Q ss_pred cCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCC-----CCceEEEEEEEEe
Q 038990 455 RRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS-----KNGAVQVEIKWKA 504 (505)
Q Consensus 455 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~~~~ 504 (505)
+. .++|+|+|+.++|++.|..+- +-.+|.+. ..-.|-+++.|.+
T Consensus 697 d~---~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DY---IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CC---CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 85 677999999999999998765 45666653 2466777777754
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.50 E-value=1.1e-06 Score=91.98 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=85.7
Q ss_pred EEEEEeeecCCC----C-C----CCCCCEEEEEEcC-----eEEEeecccCCCCCcc-CceEEEEeeCCCCCCeEEEEEE
Q 038990 388 GKATEYGAKDLE----G-K----HHNNPYAVVICRG-----EQKKTKMIKKCRDPIW-NEEFQFDFEEAPLKEKIHIEVK 452 (505)
Q Consensus 388 a~v~v~~a~~L~----~-~----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~i~V~ 452 (505)
.+|+|+.|++|+ . . ...||||++.+.+ .+++|+++.++.||+| ||.|+|.+..+++ ..+.|.|+
T Consensus 433 L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf~V~ 511 (567)
T PLN02228 433 LKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWFKVQ 511 (567)
T ss_pred EEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEEEEE
Confidence 378999999862 1 1 2479999999854 2359999988899999 9999999988754 38999999
Q ss_pred EccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC-----CceEEEEEEEEe
Q 038990 453 SKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK-----NGAVQVEIKWKA 504 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~~~~ 504 (505)
|++. .+.++++|+..++++.|..+- +..+|.+.. ...|-+++.+.+
T Consensus 512 D~d~---~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 512 DYDN---DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred eCCC---CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9874 568899999999999997765 566776543 456777776654
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.48 E-value=4.5e-07 Score=91.51 Aligned_cols=110 Identities=17% Similarity=0.375 Sum_probs=92.7
Q ss_pred EEEEeeecCCCCC----CCCCCEEEEEEcCeEEEeecccCCCCCccC-ceEEEEeeCCCCCC-eEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGK----HHNNPYAVVICRGEQKKTKMIKKCRDPIWN-EEFQFDFEEAPLKE-KIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~~ 462 (505)
.|.|..|++|+.. ...|.||++.+.+..+||.+-.+++||.|| +=|.|.+.+.++++ .|.|.+.|+++ .+.
T Consensus 6 ~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt---ysa 82 (1169)
T KOG1031|consen 6 GVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT---YSA 82 (1169)
T ss_pred eeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc---ccc
Confidence 4788899999864 478999999999999999999999999999 68999998876654 89999999996 577
Q ss_pred CCccEEEEEeccccccC----------CEEeEEEEeCCC---CCceEEEEEE
Q 038990 463 KESLGYVDINLHDVLHN----------GRLKEKYHLINS---KNGAVQVEIK 501 (505)
Q Consensus 463 d~~lG~~~i~L~~l~~~----------~~~~~~~~L~~~---~~G~i~l~~~ 501 (505)
++-||.+.|+++.|.-. ..+..||+.-+. -+|+|.+-++
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 89999999999887642 256899999875 3789887664
No 230
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.43 E-value=7.7e-07 Score=93.12 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=80.4
Q ss_pred EEEEeeecCCCCC--CCCCCEEEEEEcC------eEEEeecccCCCCCccC-ceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 389 KATEYGAKDLEGK--HHNNPYAVVICRG------EQKKTKMIKKCRDPIWN-EEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~--~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
.|.|+.|++|+.. +...|||++.+-+ +.++|.++.+..||+|| |.|+|.|.+|.. .-|.+.|++.+.
T Consensus 1068 sv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~-A~lRF~V~eeDm--- 1143 (1267)
T KOG1264|consen 1068 SVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF-AFLRFVVYEEDM--- 1143 (1267)
T ss_pred EEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce-EEEEEEEecccc---
Confidence 8999999999864 4677999999854 23466777789999999 999999999854 479999999984
Q ss_pred CCCCCccEEEEEeccccccCCEEeEEEEeCCCCCc
Q 038990 460 LRSKESLGYVDINLHDVLHNGRLKEKYHLINSKNG 494 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 494 (505)
++...+||+++.|+..+..+- +..+|+++-+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySE 1175 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSE 1175 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCchh
Confidence 778889999999999887653 56777765443
No 231
>PLN02352 phospholipase D epsilon
Probab=98.38 E-value=1.6e-06 Score=93.00 Aligned_cols=90 Identities=21% Similarity=0.364 Sum_probs=75.6
Q ss_pred CCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCCE-
Q 038990 404 NNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR- 481 (505)
Q Consensus 404 ~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~- 481 (505)
.+|||.+.+++.+. +| .+..||+|+|+|...|... .+..+.|+|.|. ..+||.+.++..+++.++.
T Consensus 36 ~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~--------~~~ig~~~~p~~~~~~g~~~ 103 (758)
T PLN02352 36 KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK--------CSILGRFHIQAHQIVTEASF 103 (758)
T ss_pred CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC--------CeEEEEEEEEHHHhhCCCcc
Confidence 39999999988765 77 6667999999999999875 334799999874 3799999999999999865
Q ss_pred EeEEEEeCCCC----C-ceEEEEEEEEeC
Q 038990 482 LKEKYHLINSK----N-GAVQVEIKWKAI 505 (505)
Q Consensus 482 ~~~~~~L~~~~----~-G~i~l~~~~~~~ 505 (505)
+++||++.+.. . .+|+++++|.|+
T Consensus 104 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 104 INGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred cceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 89999998642 3 599999999985
No 232
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.38 E-value=4.4e-07 Score=91.54 Aligned_cols=92 Identities=32% Similarity=0.513 Sum_probs=80.2
Q ss_pred EEEEEEEeeccCccccCCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEc-eeEEEEeecC--CCCEEEEEEEEcCC
Q 038990 262 GILHVKVIRAIRLLKMDIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWN-EDFKLTVKDP--ETQVLQLHVYDWEK 337 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wn-e~f~~~v~~~--~~~~L~v~v~d~d~ 337 (505)
|.|.|++..|++|+-+|.. ...|.||.+.++... ++|.+..+++||.|| +.|.|.+.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7789999999999999864 456999999999765 589999999999999 6788998754 46789999999999
Q ss_pred CCCCcccEEEEEECccCCC
Q 038990 338 VGTHDKLGMQVVPLRSLTP 356 (505)
Q Consensus 338 ~~~d~~lG~~~i~l~~l~~ 356 (505)
.+.+|-||.+.++++.|.-
T Consensus 80 ysandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred cccccccceeeeccChHHH
Confidence 9999999999999987653
No 233
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.34 E-value=3.3e-07 Score=99.26 Aligned_cols=107 Identities=25% Similarity=0.211 Sum_probs=87.8
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEE---eecCCCCEEEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLT---VKDPETQVLQLHVYD 334 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~---v~~~~~~~L~v~v~d 334 (505)
..|.|.|-|..|++|+--..+..+||||+.++.+.. ..++||+++++|.||+|||+.... ........|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 368999999999999665545678999999997653 345799999999999999987765 222346789999999
Q ss_pred cCCCCCCcccEEEEEECccCCCCCeeEEEEec
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNETKELTLDL 366 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l 366 (505)
.+....+.++|.+.++|.++.......-|++|
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99888999999999999998877665566665
No 234
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=3.3e-06 Score=80.40 Aligned_cols=96 Identities=33% Similarity=0.379 Sum_probs=79.9
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCee--cceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER--IPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLH 331 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~ 331 (505)
++.....-+.|++++|..|..+|.+|.+||||+.++.+.. .-+++|.+.+++.||.||+.|.+.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4556778899999999999999999999999999987643 224689999999999999999998853 236789999
Q ss_pred EEEcCCCCCCcccEEEEEEC
Q 038990 332 VYDWEKVGTHDKLGMQVVPL 351 (505)
Q Consensus 332 v~d~d~~~~d~~lG~~~i~l 351 (505)
+||++..+..+++|-+....
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999877889998866543
No 235
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.04 E-value=4e-06 Score=91.17 Aligned_cols=101 Identities=27% Similarity=0.335 Sum_probs=81.3
Q ss_pred EEEEEeeecCCC---CCCCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEE-eeCCCC-CCeEEEEEEEccCC
Q 038990 388 GKATEYGAKDLE---GKHHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFD-FEEAPL-KEKIHIEVKSKRRG 457 (505)
Q Consensus 388 a~v~v~~a~~L~---~~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~l~i~V~d~~~~ 457 (505)
.+|.|+-|++|+ ....+||||+.|+... ++||+++++|.||.|||...+. .+...+ ++.|.++||....
T Consensus 1526 LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~- 1604 (1639)
T KOG0905|consen 1526 LTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG- 1604 (1639)
T ss_pred EEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc-
Confidence 377888899984 3348999999999764 3599999999999999998887 333222 3589999999874
Q ss_pred ccCCCCCccEEEEEeccccccCCEEeEEEEeCCC
Q 038990 458 LRLRSKESLGYVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
...+.++|.+.|+|.++...++..+||.|...
T Consensus 1605 --~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1605 --LLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred --eeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 66789999999999998887776799999653
No 236
>PLN02352 phospholipase D epsilon
Probab=98.00 E-value=2.1e-05 Score=84.54 Aligned_cols=100 Identities=16% Similarity=0.306 Sum_probs=77.2
Q ss_pred CeEEEEEEEeeccCcccc----CCC-CCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEE
Q 038990 260 PVGILHVKVIRAIRLLKM----DIF-GASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYD 334 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d 334 (505)
-.|.|.++|.+|+-+... +.. ...|||+.+.+++.++ .|| .+..||.|+|+|.+.+.......+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999843222 111 1239999999998765 467 556699999999999987654579999988
Q ss_pred cCCCCCCcccEEEEEECccCCCCCe-eEEEEecccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNET-KELTLDLVKN 369 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~~-~~~~l~l~~~ 369 (505)
.-.+||.+.+|..++..++. .+.|++++..
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~ 113 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIME 113 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence 25799999999999998865 7788887643
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.98 E-value=1.3e-05 Score=66.39 Aligned_cols=86 Identities=24% Similarity=0.351 Sum_probs=66.5
Q ss_pred CCCCEEEEEEc----CeEEEeecccCCCCCccCceEEEEee--------CC-C----C-CCeEEEEEEEccCCcc-----
Q 038990 403 HNNPYAVVICR----GEQKKTKMIKKCRDPIWNEEFQFDFE--------EA-P----L-KEKIHIEVKSKRRGLR----- 459 (505)
Q Consensus 403 ~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~--------~~-~----~-~~~l~i~V~d~~~~~~----- 459 (505)
--|+|+++.+. ++.++|+++-++..|.|+.+++|.|. .. . + ...+.++||+++.+..
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 46899999863 35579999999999999999999997 11 0 1 2378999999764311
Q ss_pred --CCCCCccEEEEEeccccccC-CEEeEEEEe
Q 038990 460 --LRSKESLGYVDINLHDVLHN-GRLKEKYHL 488 (505)
Q Consensus 460 --~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 488 (505)
..+|-.||.+.||+.+|+.+ ..+.+||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 23566999999999999985 467999975
No 238
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.95 E-value=5.5e-06 Score=63.50 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=66.3
Q ss_pred EEEEeeccCccccCCCC-CCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec--CCCCEEEEEEEEcCCCCCC
Q 038990 265 HVKVIRAIRLLKMDIFG-ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD--PETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 265 ~V~v~~a~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~~L~v~v~d~d~~~~d 341 (505)
-+++++|++|.-....| .+.-|++--+.-.+-...||+++++..||.|+|+|.|.+.. ...-.|-+.||. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47899999997655333 23446653332112223689999999999999999998863 335578889988 46788
Q ss_pred cccEEEEEECccCCCC
Q 038990 342 DKLGMQVVPLRSLTPN 357 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~~ 357 (505)
+.||.|.+.++++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988765
No 239
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.87 E-value=1.1e-05 Score=61.95 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred EEEeeecCCCC--C--CCCCCEEEEEEc--C-eEEEeecccCCCCCccCceEEEEeeCCCCCC-eEEEEEEEccCCccCC
Q 038990 390 ATEYGAKDLEG--K--HHNNPYAVVICR--G-EQKKTKMIKKCRDPIWNEEFQFDFEEAPLKE-KIHIEVKSKRRGLRLR 461 (505)
Q Consensus 390 v~v~~a~~L~~--~--~~~dpyv~v~~~--~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~i~V~d~~~~~~~~ 461 (505)
+++.+|+||.- . .++.-|++--+. . ...||.+...+.||+|+|+|.|.+....+.+ .|.++|+.. ..
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-----~~ 77 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-----TP 77 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-----CC
Confidence 67889999842 2 245556665442 2 2349999999999999999999997665555 789999884 56
Q ss_pred CCCccEEEEEeccccccCCEEeEEEE
Q 038990 462 SKESLGYVDINLHDVLHNGRLKEKYH 487 (505)
Q Consensus 462 ~d~~lG~~~i~L~~l~~~~~~~~~~~ 487 (505)
+++.+|.++++|+++-..+ ..+|.+
T Consensus 78 RKe~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCCHHH-hhhhhc
Confidence 8899999999998875533 356643
No 240
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=3.4e-05 Score=82.35 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=75.1
Q ss_pred CcCCeEEEEEEEeeccCccccCCCCCCCcEEEE-EECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 257 IKKPVGILHVKVIRAIRLLKMDIFGASDPYVQL-SLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 257 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v-~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
.+.-.|+..+++++|+ ++ ..|||..+ ++|.+. +||.+.++|.||+||+...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 4556899999999997 33 35887664 566544 6999999999999999999999876666779999999
Q ss_pred CCCCCCcccEEEEEECccCCCC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+.+++++.+|.|++++.++...
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCCHHHhhhheeecHhhccHH
Confidence 9999999999999988766544
No 241
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.66 E-value=0.0003 Score=72.91 Aligned_cols=227 Identities=15% Similarity=0.237 Sum_probs=152.1
Q ss_pred CCCCceeCCCC-------CchHHHHHHHHhhCh------hhHHHHHHHHHHHHHHHHHhccCcceeeEEEEeEEecCCCC
Q 038990 59 EIPLWVKHPDY-------DRIDWLNKFVSDLWP------YLDKAICSTARSNLEPIFAEYIGKYCIRSVDFKTLTLGTLP 125 (505)
Q Consensus 59 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 125 (505)
+.|.|...... ..|-.+|.+++.++. .++.++.+.+.+.++.++.....+-.++.+.+.++-+|.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 68889765432 245667777877775 35556666666677777765443334899999999999999
Q ss_pred CeEeEEEEEEcC------------C-------------ceEEEeeeEEEeCCCcEEEEEEE-eceEEEEEEEEEEEEEEE
Q 038990 126 PIIHGIKVCETN------------E-------------NELILEPALRWAGNPNITLALKF-FSLQITVQLLDVQIRAAP 179 (505)
Q Consensus 126 P~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~l~~~g~~ 179 (505)
|.+++.+++.-+ + ..+.+=.++.|.|+..-++.+.. .+.+..+.+.-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998611 0 11334468889888777776655 233344445566999999
Q ss_pred EEEeeecCCCCCccceEEEEecCCceEEEEeeEe-ccccccchhhHHHHHHHHHHHHHhhccCCCCcc--cccc-----c
Q 038990 180 RIVLKPLVPAFPCFAGIAVSLMEKPEVDFGLKLV-GGDMMAIPGLYQFIQETIRNQISALYLWPQPLE--IPIL-----D 251 (505)
Q Consensus 180 rv~l~pl~~~~P~~~~~~~sf~~~P~~d~~~~~~-g~~i~~iP~l~~~i~~~i~~~l~~~~v~P~~~~--~~l~-----~ 251 (505)
|+.+. .-....++++|...|.+.-+.+.- -++-|. --+.+.|...++..+.+...||++-- .|.. +
T Consensus 241 r~~~~-----r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~~ 314 (1051)
T KOG3532|consen 241 RVILS-----RQPYHHWTFSFVGQPIFETDINSQIQGHQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIFQ 314 (1051)
T ss_pred eEEEE-----eccceeeeeeeccCchhhhhhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCcccc
Confidence 99886 334678999999999876555432 011110 12445677888888899999999632 1221 1
Q ss_pred CCc----CCCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECC
Q 038990 252 GSL----GAIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSG 293 (505)
Q Consensus 252 ~~~----~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~ 293 (505)
... ...-.+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 315 a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 315 ASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 100 01234789999999999888654 47788999988754
No 242
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0001 Score=71.72 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCeEEEEEEEeeccCccccCCCC-CCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE-E
Q 038990 259 KPVGILHVKVIRAIRLLKMDIFG-ASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY-D 334 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~~g-~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~-d 334 (505)
...|.+.|.+++|++|..+.-.+ .++|||+|++.+. ...+.+|+...+|.+|.+.+...|.- .+....|.+.+| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 35799999999999998875433 5799999998654 34556899999999998877666655 455778999999 6
Q ss_pred cCCCCCCcccEEEEEECccCCCCC-eeEEEEecccc
Q 038990 335 WEKVGTHDKLGMQVVPLRSLTPNE-TKELTLDLVKN 369 (505)
Q Consensus 335 ~d~~~~d~~lG~~~i~l~~l~~~~-~~~~~l~l~~~ 369 (505)
+.++.++.|+|.+.+-+.+|.... ....|+++...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 778888899999999999999876 66788887654
No 243
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.37 E-value=0.00022 Score=73.30 Aligned_cols=87 Identities=31% Similarity=0.553 Sum_probs=70.4
Q ss_pred eeccCccccCCCCCCCcEEEEEEC---CeecceeeeeeeCCCCCCeEceeEEEEeecC----CCCEEEEEEEEcCCCCCC
Q 038990 269 IRAIRLLKMDIFGASDPYVQLSLS---GERIPAKKTSVKMKTLNPEWNEDFKLTVKDP----ETQVLQLHVYDWEKVGTH 341 (505)
Q Consensus 269 ~~a~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~~L~v~v~d~d~~~~d 341 (505)
++|++|.++|..+++|||..++-. +.....++|++.++++||.|.+ |.+..... ....+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999988643 2233457999999999999995 44444322 246788999999999999
Q ss_pred cccEEEEEECccCCC
Q 038990 342 DKLGMQVVPLRSLTP 356 (505)
Q Consensus 342 ~~lG~~~i~l~~l~~ 356 (505)
+++|++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999999875
No 244
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.31 E-value=0.00028 Score=69.31 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=88.2
Q ss_pred EEEEeeecCCCC---CCCCCCEEEEEEc-----CeEEEeecccCCCCCccCceEEEEeeCCCC----------CCeEEEE
Q 038990 389 KATEYGAKDLEG---KHHNNPYAVVICR-----GEQKKTKMIKKCRDPIWNEEFQFDFEEAPL----------KEKIHIE 450 (505)
Q Consensus 389 ~v~v~~a~~L~~---~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~----------~~~l~i~ 450 (505)
++.|..+++++. ....|.|+++.+. ..+.+|.+++.|.+|.|+|.|..++...+. ...+.|+
T Consensus 370 el~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfe 449 (523)
T KOG3837|consen 370 ELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFE 449 (523)
T ss_pred HHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEE
Confidence 566667777754 2367889988762 123499999999999999999999976311 1258999
Q ss_pred EEEccCCccCCCCCccEEEEEeccccccCCEEeEEEEeCCCC---CceEEEEEEEE
Q 038990 451 VKSKRRGLRLRSKESLGYVDINLHDVLHNGRLKEKYHLINSK---NGAVQVEIKWK 503 (505)
Q Consensus 451 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~~~ 503 (505)
++++.. .+.+|.++|.+.+.|..|.....+.+.|+|.++. +|++.++++.+
T Consensus 450 ifhkgg--f~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 450 IFHKGG--FNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred Eeeccc--cccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 999875 3778999999999999887767788999999863 79999888765
No 245
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00064 Score=66.26 Aligned_cols=99 Identities=24% Similarity=0.314 Sum_probs=79.1
Q ss_pred EEEEeeecCCCCC----CCCCCEEEEEEcCe-----EEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 389 KATEYGAKDLEGK----HHNNPYAVVICRGE-----QKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
+|.|++|++|-.+ ..++|||+||+... +.+|+...+|.+|-+.+...|.-..+ ...|.+.||..-. .
T Consensus 272 ~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~--~k~Lq~tv~gdyg--R 347 (405)
T KOG2060|consen 272 EVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP--GKYLQGTVWGDYG--R 347 (405)
T ss_pred eEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC--ccEEEEEEecccc--c
Confidence 8999999999532 37999999999653 34999999999999988777766543 4689999996543 3
Q ss_pred CCCCCccEEEEEeccccccCC-EEeEEEEeCCC
Q 038990 460 LRSKESLGYVDINLHDVLHNG-RLKEKYHLINS 491 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 491 (505)
...+.++|.+.+-+.+|-... ....||+|-+.
T Consensus 348 md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 348 MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 667899999999999998765 67899999764
No 246
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.19 E-value=0.00055 Score=56.87 Aligned_cols=93 Identities=25% Similarity=0.389 Sum_probs=68.0
Q ss_pred EEEEEeeccCccccC---------C----CCCCCcEEEEEEC--CeecceeeeeeeCCCCCCeEceeEEEEee-------
Q 038990 264 LHVKVIRAIRLLKMD---------I----FGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLTVK------- 321 (505)
Q Consensus 264 L~V~v~~a~~L~~~d---------~----~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~~~v~------- 321 (505)
|.|.|++|.+|+... . .-.-++||++.+. ++. +.++|+++.++.-|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 467889999987532 1 1124799999854 322 3468999999999999999999875
Q ss_pred -c-------CCCCEEEEEEEEcCCC----------CCCcccEEEEEECccCCCC
Q 038990 322 -D-------PETQVLQLHVYDWEKV----------GTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 322 -~-------~~~~~L~v~v~d~d~~----------~~d~~lG~~~i~l~~l~~~ 357 (505)
+ .+...+.++||+.+.- .+|-.||.+.||+.+|...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1255789999987632 3455899999999988754
No 247
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.00 E-value=0.066 Score=53.23 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=138.7
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeec-------CCCCEEEEEEEEcC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKD-------PETQVLQLHVYDWE 336 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~-------~~~~~L~v~v~d~d 336 (505)
+.|+|++++|.+... ...-.+..++++... .|..+..+..|.||......+.- .....+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998762 345677888988775 67778889999999888777641 24678999999998
Q ss_pred -CCCCCcccEEEEEECccC---CCC--CeeEEEEeccccC------CCC-----------C-----cc--cc----cccc
Q 038990 337 -KVGTHDKLGMQVVPLRSL---TPN--ETKELTLDLVKNT------NPN-----------D-----PQ--DK----KFER 382 (505)
Q Consensus 337 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~l~l~~~~------~~~-----------~-----~~--~~----~~~g 382 (505)
..++.+.+|.+.++|+.. ..+ .....|++|+... +|. . .. .. ...+
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~ 155 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQG 155 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccC
Confidence 567889999999999998 444 3445676664320 000 0 00 00 0000
Q ss_pred ---------c---------cc-------------ce--EEEEEeeecCCCCC---------CCCCCEEEEEEcCeEEEee
Q 038990 383 ---------K---------ES-------------EV--GKATEYGAKDLEGK---------HHNNPYAVVICRGEQKKTK 420 (505)
Q Consensus 383 ---------~---------~~-------------~~--a~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~ 420 (505)
. ++ |+ ..|++..|++|..- +...-|...++-+....|.
T Consensus 156 ~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~ 235 (340)
T PF12416_consen 156 HVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTE 235 (340)
T ss_pred CCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEee
Confidence 0 00 11 26777788887432 1245566667778878888
Q ss_pred cccCCCCCccC-ceEE-EEeeCC--------CCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC---------E
Q 038990 421 MIKKCRDPIWN-EEFQ-FDFEEA--------PLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG---------R 481 (505)
Q Consensus 421 v~~~t~nP~wn-e~f~-f~v~~~--------~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~---------~ 481 (505)
.-+...+|.|. |.-. +.+... .....|.|.++.. +..||.+.+++..++... .
T Consensus 236 ~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g--------~~~Lg~~~v~l~~Ll~~~~~~~~~~~~~ 307 (340)
T PF12416_consen 236 PFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG--------NQSLGSTSVPLQPLLPKDSLEFNNSPVI 307 (340)
T ss_pred eccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC--------CcEEEEEEEEhhhccCCCcccccCCcee
Confidence 88888889875 3334 666533 1123567766654 467999999999997432 2
Q ss_pred EeEEEEeC
Q 038990 482 LKEKYHLI 489 (505)
Q Consensus 482 ~~~~~~L~ 489 (505)
.++-|.|.
T Consensus 308 ~eg~F~l~ 315 (340)
T PF12416_consen 308 IEGAFPLN 315 (340)
T ss_pred ecceEeec
Confidence 35567765
No 248
>PLN02964 phosphatidylserine decarboxylase
Probab=96.82 E-value=0.0019 Score=69.17 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=74.8
Q ss_pred ceEEEEEeeecCCCCCCCCCCEEE-EEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCC
Q 038990 386 EVGKATEYGAKDLEGKHHNNPYAV-VICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKE 464 (505)
Q Consensus 386 ~~a~v~v~~a~~L~~~~~~dpyv~-v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~ 464 (505)
.+|.+++.+|+ .+..|+|.. ++++.+..||...++|.||+||+...|.+..... ...++.|||.++ ++.++
T Consensus 54 ~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~s~n~ 125 (644)
T PLN02964 54 GIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNR---LSKNT 125 (644)
T ss_pred CeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCC---CCHHH
Confidence 35688998887 334688655 5666777899999999999999999999876533 357999999985 88999
Q ss_pred ccEEEEEeccccccCC--EEeEEEEeCCC
Q 038990 465 SLGYVDINLHDVLHNG--RLKEKYHLINS 491 (505)
Q Consensus 465 ~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 491 (505)
++|.+.++|.++...+ .+.+-|.+.+.
T Consensus 126 lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 126 LVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred hhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999998877654 22333555543
No 249
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.76 E-value=0.012 Score=58.37 Aligned_cols=112 Identities=15% Similarity=0.290 Sum_probs=89.3
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCC------CCeEEEEEEEccCCccCCC
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPL------KEKIHIEVKSKRRGLRLRS 462 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~------~~~l~i~V~d~~~~~~~~~ 462 (505)
.+.|.++++.+....-.-.+..++++....|..+.++..|.||....+.+....+ ...|++++|.-+.. .+.
T Consensus 3 vl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~--~~~ 80 (340)
T PF12416_consen 3 VLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS--TGK 80 (340)
T ss_pred EEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC--CCc
Confidence 4788999999987677789999999999999999999999999999999864311 23789999887632 467
Q ss_pred CCccEEEEEecccc---ccC--CEEeEEEEeCCC------CCceEEEEEEE
Q 038990 463 KESLGYVDINLHDV---LHN--GRLKEKYHLINS------KNGAVQVEIKW 502 (505)
Q Consensus 463 d~~lG~~~i~L~~l---~~~--~~~~~~~~L~~~------~~G~i~l~~~~ 502 (505)
.+.+|.+.++|... ..+ ....+||+|.+. .+-+|.|.+.-
T Consensus 81 re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 81 RESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred ceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 89999999999988 444 355799999986 25677776653
No 250
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.07 E-value=0.044 Score=48.43 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=61.1
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEc
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDW 335 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~ 335 (505)
..++|+++++.++.-.+ .+|-||.+.+ ++.... ...|+.+. ..++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 35789999999987643 4688888754 444331 12344333 368999999988775 2 3467899999997
Q ss_pred CCCC----CCcccEEEEEECccCC
Q 038990 336 EKVG----THDKLGMQVVPLRSLT 355 (505)
Q Consensus 336 d~~~----~d~~lG~~~i~l~~l~ 355 (505)
.... ....+|.+.++|-+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 2246999999987633
No 251
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.80 E-value=0.037 Score=48.88 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=60.5
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCccC
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~ 460 (505)
+|.|+++.+++-...++-||++.+ +++. ..|+.+.. .++.|||-.+|.+. +.+.+..|.|+||+.... ..
T Consensus 11 ~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~-~~ 88 (158)
T cd08398 11 RIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR-KG 88 (158)
T ss_pred EEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc-cC
Confidence 788999998877666788888855 4433 24554443 78999998888764 445566899999987531 01
Q ss_pred --CCCCccEEEEEecccc
Q 038990 461 --RSKESLGYVDINLHDV 476 (505)
Q Consensus 461 --~~d~~lG~~~i~L~~l 476 (505)
.....+|.++++|.+-
T Consensus 89 ~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 89 AKEEHCPLAWGNINLFDY 106 (158)
T ss_pred CCCceEEEEEEEEEEECC
Confidence 1224699999999873
No 252
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.62 E-value=0.079 Score=47.69 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=62.4
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEE--ECCeecc-eeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEc
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLS--LSGERIP-AKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDW 335 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~--l~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~ 335 (505)
..++|+++++.++...+ ...+-||.+. .|+.... ...|+.+..+.++.|||.+.|.+. + |....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 36789999999998622 3456677764 3554431 235555555567999999998764 2 3467899999997
Q ss_pred CCCC----------------CCcccEEEEEECccCC
Q 038990 336 EKVG----------------THDKLGMQVVPLRSLT 355 (505)
Q Consensus 336 d~~~----------------~d~~lG~~~i~l~~l~ 355 (505)
.... .+..||.+.++|-+-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 5422 2458899998886633
No 253
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.59 E-value=0.072 Score=47.11 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=65.6
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEEE--CCeec-ceeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEcC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERI-PAKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDWE 336 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~d 336 (505)
.++|++....+....+ ....+-||.+.+ ++... ....|.......++.|||...|.+. + +....|.+++|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788877776521 234566777644 44432 2223433333478999999998764 2 34678999999987
Q ss_pred CCC--CCcccEEEEEECccCCCCC-eeEEEEeccc
Q 038990 337 KVG--THDKLGMQVVPLRSLTPNE-TKELTLDLVK 368 (505)
Q Consensus 337 ~~~--~d~~lG~~~i~l~~l~~~~-~~~~~l~l~~ 368 (505)
..+ ++..+|.+.++|-+-...- ...+.+.++.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~ 122 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWP 122 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccCcEecCCEEEeccC
Confidence 544 4679999999997744321 1124455554
No 254
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.35 E-value=0.5 Score=40.88 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=76.2
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeE---EEeec-ccCCCCCccCceEEEEeeCC---C---CC-CeEEEEEEEccCC
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQ---KKTKM-IKKCRDPIWNEEFQFDFEEA---P---LK-EKIHIEVKSKRRG 457 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~---~kT~v-~~~t~nP~wne~f~f~v~~~---~---~~-~~l~i~V~d~~~~ 457 (505)
.+.|++..+++. ....-|++...+... .+|.. ...+..-.|||.|.+.+.-. . .. ..+.|.|+....
T Consensus 10 ~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~- 87 (143)
T PF10358_consen 10 DLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDG- 87 (143)
T ss_pred EEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecC-
Confidence 577888888876 334445555555443 23333 23456678999999987621 1 12 268888887731
Q ss_pred ccCCCCCccEEEEEeccccccC--CEEeEEEEeCCC--CCceEEEEEEEEeC
Q 038990 458 LRLRSKESLGYVDINLHDVLHN--GRLKEKYHLINS--KNGAVQVEIKWKAI 505 (505)
Q Consensus 458 ~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~--~~G~i~l~~~~~~~ 505 (505)
-+....+|.+.++|++.... ......++|... .+..++|+++..++
T Consensus 88 --~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 88 --SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSEL 137 (143)
T ss_pred --CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEEC
Confidence 12236999999999999984 456788999875 37889999888764
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.06 E-value=0.22 Score=43.49 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=77.8
Q ss_pred EEEEeeecCCCCC-----CCCCC--EEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCC------------CCCeEEE
Q 038990 389 KATEYGAKDLEGK-----HHNNP--YAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAP------------LKEKIHI 449 (505)
Q Consensus 389 ~v~v~~a~~L~~~-----~~~dp--yv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~~~~l~i 449 (505)
.+.|..++-.-.. +..+. ++-+.++++..+|+.+..+.+|.|+|.|-|.+.... ..+.+++
T Consensus 12 ~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihi 91 (156)
T PF15627_consen 12 HLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHI 91 (156)
T ss_pred EEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEE
Confidence 5566665543210 23333 444455788889999999999999999999997653 2347888
Q ss_pred EEEEccCCccCCCCCccEEEEEeccccccCCEE--eEEEEeCCC------CCceEEEEEEEEe
Q 038990 450 EVKSKRRGLRLRSKESLGYVDINLHDVLHNGRL--KEKYHLINS------KNGAVQVEIKWKA 504 (505)
Q Consensus 450 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~L~~~------~~G~i~l~~~~~~ 504 (505)
-|...+. .+...++|+-.++...++..+.. .-..+|.+. ..|-+.++++..|
T Consensus 92 vli~~d~---~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 92 VLIRTDP---SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred EEEEecC---CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 8887664 44558999999999888876533 445566543 2577777777655
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.93 E-value=0.11 Score=46.68 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=62.7
Q ss_pred EEEEEeeecCCCC-CCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCc
Q 038990 388 GKATEYGAKDLEG-KHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 388 a~v~v~~a~~L~~-~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~ 458 (505)
-+|+|+.+.++.. ....+-||++.+ +++. ..|+.+..+.++.|||..+|.+. +.+.+..|.|+||+.....
T Consensus 10 f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~ 89 (173)
T cd08693 10 FSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKA 89 (173)
T ss_pred EEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccc
Confidence 3788999999986 446777877644 5543 36666665678999998888764 4455668999999865310
Q ss_pred c-------------CCCCCccEEEEEeccccc
Q 038990 459 R-------------LRSKESLGYVDINLHDVL 477 (505)
Q Consensus 459 ~-------------~~~d~~lG~~~i~L~~l~ 477 (505)
. .+....||.++++|.+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 90 KGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccCcceEEEEEeEEEEccc
Confidence 0 112468999999998743
No 257
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=94.80 E-value=0.019 Score=56.77 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=78.9
Q ss_pred cCCeEEEEEEEeeccCccccCCCCCCCcEEEEEEC--CeecceeeeeeeCCCCCCeEceeEEEEeecC-----------C
Q 038990 258 KKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLS--GERIPAKKTSVKMKTLNPEWNEDFKLTVKDP-----------E 324 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~-----------~ 324 (505)
+.....|.+.|+++.+++........|-|+++.+. .+...+.+|.++++|.+|.|+|.|.+.+..- .
T Consensus 363 dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 363 DLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred ccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 34556777788888877655422335778887752 2222345899999999999999999988641 1
Q ss_pred CCEEEEEEEEcCCC-CCCcccEEEEEECccCCCCCeeEEEEecc
Q 038990 325 TQVLQLHVYDWEKV-GTHDKLGMQVVPLRSLTPNETKELTLDLV 367 (505)
Q Consensus 325 ~~~L~v~v~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~~l~l~ 367 (505)
...++|++|+...+ ..|.++|.|.+.+.-|...-.-+..++|.
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~ 486 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLK 486 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecc
Confidence 34589999998754 57889999999999888664445556654
No 258
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.62 E-value=0.15 Score=45.91 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=63.9
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE--CCeecce-eeeeeeC----CCCCCeEceeEEEEee---cCCCCEEEEE
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIPA-KKTSVKM----KTLNPEWNEDFKLTVK---DPETQVLQLH 331 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~~~~----~t~nP~wne~f~~~v~---~~~~~~L~v~ 331 (505)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. -+....|.+.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567899999999988765456788888754 5444311 1333211 1235779999888775 2346789999
Q ss_pred EEEcCCCC---------CCcccEEEEEECccCC
Q 038990 332 VYDWEKVG---------THDKLGMQVVPLRSLT 355 (505)
Q Consensus 332 v~d~d~~~---------~d~~lG~~~i~l~~l~ 355 (505)
+|+....+ .+..||.+.++|-+-.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 99976543 3568999999987643
No 259
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.25 E-value=0.08 Score=57.32 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=66.8
Q ss_pred eEEEEEEEeeccCccccCCCCCCCcEEEEEECCee----cceeeeeee-CCCCCCeEce-eEEEE-eecCCCCEEEEEEE
Q 038990 261 VGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGER----IPAKKTSVK-MKTLNPEWNE-DFKLT-VKDPETQVLQLHVY 333 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~~~-~~t~nP~wne-~f~~~-v~~~~~~~L~v~v~ 333 (505)
.+.+.|+|+++.-|..++ ...||.|.+-+-. ...+||++. .++.||+|+| .|.|. |.-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578899999999997665 4589999884421 123566665 5678999996 55554 22345567999999
Q ss_pred EcCCCCCCcccEEEEEECccCCCCC
Q 038990 334 DWEKVGTHDKLGMQVVPLRSLTPNE 358 (505)
Q Consensus 334 d~d~~~~d~~lG~~~i~l~~l~~~~ 358 (505)
+.. ..++|+=.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998873
No 260
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=94.10 E-value=0.64 Score=40.32 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=51.5
Q ss_pred EECCeecc--eeeeeeeCCC-CCCeEceeEEEEee---cCCCCEEEEEEEEcCCCCCC----cccEEEEEECccCCCCC-
Q 038990 290 SLSGERIP--AKKTSVKMKT-LNPEWNEDFKLTVK---DPETQVLQLHVYDWEKVGTH----DKLGMQVVPLRSLTPNE- 358 (505)
Q Consensus 290 ~l~~~~~~--~~~T~~~~~t-~nP~wne~f~~~v~---~~~~~~L~v~v~d~d~~~~d----~~lG~~~i~l~~l~~~~- 358 (505)
+.|++... ...|.....+ .++.|||...|.+. -|....|.++||+.+....+ ..||.+.++|-+-...-
T Consensus 11 y~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~ 90 (142)
T PF00792_consen 11 YHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLR 90 (142)
T ss_dssp EETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBE
T ss_pred EECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCccc
Confidence 33555443 2356655555 79999999999875 24577899999998765555 69999999998764332
Q ss_pred eeEEEEecccc
Q 038990 359 TKELTLDLVKN 369 (505)
Q Consensus 359 ~~~~~l~l~~~ 369 (505)
...+.+.++..
T Consensus 91 ~G~~~L~lW~~ 101 (142)
T PF00792_consen 91 QGPQKLSLWPD 101 (142)
T ss_dssp EEEEEEE-EET
T ss_pred CCCEEEEEEcC
Confidence 22455666654
No 261
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.05 E-value=0.13 Score=45.56 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=52.5
Q ss_pred CCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCccCCCCCccEEEEEec
Q 038990 402 HHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINL 473 (505)
Q Consensus 402 ~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L 473 (505)
..++-||++.+ +++. ..|+.+.-+..+.|||-.+|.+. +.+.+..|.|+||+... .+....+|.++++|
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~---~~~~~~vg~~~~~l 104 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG---TGKAVPFGGTTLSL 104 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC---CCCceEEEEEEEee
Confidence 35777888765 3432 26666666778999998888775 44556689999999863 23567999999999
Q ss_pred ccc
Q 038990 474 HDV 476 (505)
Q Consensus 474 ~~l 476 (505)
.+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 874
No 262
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.75 E-value=0.18 Score=44.63 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=52.6
Q ss_pred CCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEcCCCCCCcccEEEEEECccC
Q 038990 281 GASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 281 g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l 354 (505)
..+|-||.+.+ ++.... ...|+.+.-+..+.|||...|++. + +.+..|.|++||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677887755 333221 125555555667899999998875 2 34678999999998666778999999999764
No 263
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.58 E-value=0.46 Score=42.80 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred EEEEEEeeccCccccCCCCCCCcEEEEE--ECCeecceeeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEEEcCC
Q 038990 263 ILHVKVIRAIRLLKMDIFGASDPYVQLS--LSGERIPAKKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVYDWEK 337 (505)
Q Consensus 263 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~--l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~d~d~ 337 (505)
.++|+|.++..+. .+......-||.+. .++......+|+....+.+|.|||...|.+. + +....|.|+||+...
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 4677787776432 22122233455553 3444332335666666778999998888765 2 346789999999742
Q ss_pred CC----------------CCcccEEEEEECcc
Q 038990 338 VG----------------THDKLGMQVVPLRS 353 (505)
Q Consensus 338 ~~----------------~d~~lG~~~i~l~~ 353 (505)
.. .+..||.+.+.|-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEc
Confidence 21 14456777777655
No 264
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.10 E-value=0.37 Score=42.51 Aligned_cols=87 Identities=21% Similarity=0.353 Sum_probs=58.0
Q ss_pred EEEEeeecCCCC--CCCCCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCc
Q 038990 389 KATEYGAKDLEG--KHHNNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGL 458 (505)
Q Consensus 389 ~v~v~~a~~L~~--~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~ 458 (505)
+|.++...+... ....+-||++.+ +++. +.|.....+.++.|||..+|.+. +.+.+..|.|++|+....
T Consensus 11 ~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~- 89 (156)
T cd08380 11 RIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEP- 89 (156)
T ss_pred EEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecC-
Confidence 567777776653 235666766644 4432 24444444478999998888864 445566899999997632
Q ss_pred cCCCCCccEEEEEecccc
Q 038990 459 RLRSKESLGYVDINLHDV 476 (505)
Q Consensus 459 ~~~~d~~lG~~~i~L~~l 476 (505)
....+..||.++++|-+-
T Consensus 90 ~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 90 GSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CCCcceEEEEEeEEeEcc
Confidence 012468999999999874
No 265
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.85 E-value=1.5 Score=39.23 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCEEEEEEcCeEE-Eeeccc--CCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccC
Q 038990 403 HNNPYAVVICRGEQK-KTKMIK--KCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 403 ~~dpyv~v~~~~~~~-kT~v~~--~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
...-|++++++++.. +|+... ....-.|||.|.+.+...+ +.|.++||... ...+..|+.+.+++-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~----~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKS----GLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEcc----CccceEEEEEEeeCCCCccc
Confidence 567799999999775 444333 3344558999999998764 68999999986 36789999999998655443
Q ss_pred --CE--EeEEEEeCCC------------------------CCceEEEEEEEE
Q 038990 480 --GR--LKEKYHLINS------------------------KNGAVQVEIKWK 503 (505)
Q Consensus 480 --~~--~~~~~~L~~~------------------------~~G~i~l~~~~~ 503 (505)
.. ..++|++... -+|+|.+++.|-
T Consensus 110 ~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~ 161 (168)
T PF15625_consen 110 TSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWA 161 (168)
T ss_pred ccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEe
Confidence 11 3456655421 168999998885
No 266
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.50 E-value=0.31 Score=46.76 Aligned_cols=91 Identities=22% Similarity=0.251 Sum_probs=64.8
Q ss_pred cCCeEEEEEEEeeccCccccCC--CCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEc
Q 038990 258 KKPVGILHVKVIRAIRLLKMDI--FGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDW 335 (505)
Q Consensus 258 ~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~ 335 (505)
....|+|.+++..+++|.-... .-.-+-||++..+.+. ..||.+.....--.|.|+|+..+.+ ...+.+-||.|
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence 3467999999999999975542 2245889999887554 2466666555566799999998865 35788999999
Q ss_pred CCCCCCcccEEEEEECc
Q 038990 336 EKVGTHDKLGMQVVPLR 352 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~ 352 (505)
+.-.++++.-.-.+.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~ 139 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAF 139 (442)
T ss_pred Cchhhccccccchhhhh
Confidence 87666665433333333
No 267
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.91 E-value=3.1 Score=35.84 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=65.7
Q ss_pred CeEEEEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeee-CCCCCCeEceeEEEEeec--------CCCCEEEE
Q 038990 260 PVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVK-MKTLNPEWNEDFKLTVKD--------PETQVLQL 330 (505)
Q Consensus 260 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~-~~t~nP~wne~f~~~v~~--------~~~~~L~v 330 (505)
..-.+.+++++..+++. ....-||+...+.......+|... ..+-.-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45577889999998876 223445555555443112233322 233456899999887651 12456889
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCC--CeeEEEEecc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPN--ETKELTLDLV 367 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~~l~l~ 367 (505)
.|+....-++...+|.+.++|.+.... ......+.|.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~ 119 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLK 119 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCc
Confidence 999875433446999999999998875 3444555543
No 268
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.35 E-value=2.4 Score=33.30 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCCE
Q 038990 403 HNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNGR 481 (505)
Q Consensus 403 ~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 481 (505)
..+..+.+.+.++.. .|.-. ...+..|++.|.+.+... +.|.|+|+-++- ..+-|-.-+.|.+...
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs---RELEI~VywrD~------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS---RELEIAVYWRDW------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred ccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc---cEEEEEEEEecc------hhhhhheeeEhhhhcc---
Confidence 356677777776554 45432 346788999999999654 689999998873 3667777788887432
Q ss_pred EeEEEEeCCCCCceEEEEEEE
Q 038990 482 LKEKYHLINSKNGAVQVEIKW 502 (505)
Q Consensus 482 ~~~~~~L~~~~~G~i~l~~~~ 502 (505)
...+.-.++|.+..+++|
T Consensus 75 ---~~~~~lepqg~l~~ev~f 92 (98)
T cd08687 75 ---EVQLDMEPQLCLVAELTF 92 (98)
T ss_pred ---cceeccccccEEEEEEEe
Confidence 222222347888777766
No 269
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.19 E-value=1.3 Score=38.39 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=39.9
Q ss_pred EeecccCC-CCCccCceEEEEee--CCCCCCeEEEEEEEccCCccCCCC----CccEEEEEecccc
Q 038990 418 KTKMIKKC-RDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGLRLRSK----ESLGYVDINLHDV 476 (505)
Q Consensus 418 kT~v~~~t-~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~~~~~d----~~lG~~~i~L~~l 476 (505)
.|+....+ .++.|||..+|.+. +.+.+..|.|+||.... .... ..||.+.++|.+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~---~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS---KKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC---STTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC---CCccccceeEEEEEEEEeECC
Confidence 56656655 79999998888764 55566699999998764 2233 6999999999876
No 270
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.66 E-value=0.74 Score=50.25 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcC-------eEEEeeccc-CCCCCccCc-eEEEEeeCCCCCCeEEEEEEEccCCcc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRG-------EQKKTKMIK-KCRDPIWNE-EFQFDFEEAPLKEKIHIEVKSKRRGLR 459 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~i~V~d~~~~~~ 459 (505)
.|+|++++=|.. .....||+|.+.+ +..+|+++. ++.||+|+| .|.|.---.+.-..|.|.||+.+
T Consensus 706 sV~VISgqFLSd-rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---- 780 (1189)
T KOG1265|consen 706 SVTVISGQFLSD-RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---- 780 (1189)
T ss_pred EEEEEeeeeccc-cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC----
Confidence 789999887755 3566999999865 234788777 489999985 77776432222248999999876
Q ss_pred CCCCCccEEEEEeccccccCC
Q 038990 460 LRSKESLGYVDINLHDVLHNG 480 (505)
Q Consensus 460 ~~~d~~lG~~~i~L~~l~~~~ 480 (505)
..++|+=.++++.+..+.
T Consensus 781 ---gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 781 ---GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ---CceeeeeccchhcccCcc
Confidence 489999999998877654
No 271
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.48 E-value=2 Score=38.70 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=54.8
Q ss_pred EEEEeeecCCCCCC--CCCCEEEEEE--cCeE---EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEccCCc-
Q 038990 389 KATEYGAKDLEGKH--HNNPYAVVIC--RGEQ---KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKRRGL- 458 (505)
Q Consensus 389 ~v~v~~a~~L~~~~--~~dpyv~v~~--~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~~~~- 458 (505)
+|.|+++..+.... ...-||++.+ ++.. .+|+....+.+|.|||-.+|.+. +.+.+..|.|+||+.....
T Consensus 13 riki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~ 92 (178)
T cd08399 13 RVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPAL 92 (178)
T ss_pred EEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcc
Confidence 56666666443222 2335565533 3332 26666666788999998888775 4445568999999863210
Q ss_pred ---cC---------CCCCccEEEEEeccccc
Q 038990 459 ---RL---------RSKESLGYVDINLHDVL 477 (505)
Q Consensus 459 ---~~---------~~d~~lG~~~i~L~~l~ 477 (505)
.+ ..+..||.+.++|.+-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 93 SSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred cccccccccccccccccceEEEEEEEEEcCC
Confidence 01 12568999999998733
No 272
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.23 E-value=2 Score=34.68 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=46.5
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEE--CCeecc-eeeeeeeCCCCCCeEceeEEEEee---cCCCCEEEEEEEEcCC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSL--SGERIP-AKKTSVKMKTLNPEWNEDFKLTVK---DPETQVLQLHVYDWEK 337 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~~~~~t~nP~wne~f~~~v~---~~~~~~L~v~v~d~d~ 337 (505)
+.+.+..+.+.........++-||.+.+ ++.... ...|+.+.-...+.|||...|.+. -+....|.+++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4556666666654433223578888754 444332 124555555566899999888765 2346789999999753
No 273
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.16 E-value=2.9 Score=37.92 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=39.0
Q ss_pred ceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCCC--CcccEEEEEEC
Q 038990 297 PAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVGT--HDKLGMQVVPL 351 (505)
Q Consensus 297 ~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~~--d~~lG~~~i~l 351 (505)
..++|.+...+.+|.|+|++.+.+... ....|.|++++.....+ ...+|.+-+||
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 346888999999999999999988643 45678898887542211 14566666665
No 274
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=89.12 E-value=2.5 Score=37.06 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=72.1
Q ss_pred CCeEEEEEEEeeccCccccCC--CCCCCcEE--EEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC----------
Q 038990 259 KPVGILHVKVIRAIRLLKMDI--FGASDPYV--QLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE---------- 324 (505)
Q Consensus 259 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv--~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~---------- 324 (505)
...-.|.++|..++-....-. .+..+.-. -+.+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 345678888888775433211 13334433 44556666 58889999999999999999987432
Q ss_pred ---CCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCee--EEEEecc
Q 038990 325 ---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK--ELTLDLV 367 (505)
Q Consensus 325 ---~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~--~~~l~l~ 367 (505)
.+.+.+.|...|..+...++|.-.++-+.+...... ....+|.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~ 130 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELC 130 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEe
Confidence 356788888877766678888888888776655443 4445543
No 275
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.08 E-value=3.7 Score=37.28 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=40.7
Q ss_pred eeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCC-C--CcccEEEEEECccCCCC--CeeEEEEecc
Q 038990 298 AKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVG-T--HDKLGMQVVPLRSLTPN--ETKELTLDLV 367 (505)
Q Consensus 298 ~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~-~--d~~lG~~~i~l~~l~~~--~~~~~~l~l~ 367 (505)
...|.+..++.+|.|+|+|.+.+... ....|.|++|+...-. + +..+|.+.+||-+ ... ......+.+.
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~ 135 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVY 135 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEE
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEE
Confidence 45778888899999999999988743 3568999999975432 1 2689999999988 433 3345666654
No 276
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=87.47 E-value=1.5 Score=39.39 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=58.7
Q ss_pred EEEEEeeecCCCCC---CCCCCEEEEEE--cCeE----EEeeccc----CCCCCccCceEEEEee--CCCCCCeEEEEEE
Q 038990 388 GKATEYGAKDLEGK---HHNNPYAVVIC--RGEQ----KKTKMIK----KCRDPIWNEEFQFDFE--EAPLKEKIHIEVK 452 (505)
Q Consensus 388 a~v~v~~a~~L~~~---~~~dpyv~v~~--~~~~----~kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~i~V~ 452 (505)
..++|..+.+++.. ...+-|+.+.+ +++. ..|+... -...+.|||-.+|.+. +.+.+..|.|++|
T Consensus 10 ~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~ 89 (171)
T cd04012 10 LSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLY 89 (171)
T ss_pred EEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEE
Confidence 47888899988764 25778887754 4443 2444322 1346779998777764 4445568999999
Q ss_pred EccCCcc------CCCCCccEEEEEecccc
Q 038990 453 SKRRGLR------LRSKESLGYVDINLHDV 476 (505)
Q Consensus 453 d~~~~~~------~~~d~~lG~~~i~L~~l 476 (505)
+...... -..+..||.++++|-+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 90 GTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEecCCccccccccccceEEEEEeEeeEcc
Confidence 8753100 01357999999999874
No 277
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=86.76 E-value=4.4 Score=39.70 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=70.4
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEEEeecccCCCCCccC--ceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCcc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQKKTKMIKKCRDPIWN--EEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESL 466 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wn--e~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~l 466 (505)
-|.|++..++.. ....|+.+..+....+|..+.-+..-.-+ +.....+.. -+..|++.++-+. +.+..-+
T Consensus 61 LVeI~EI~~i~k--~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk----Lvkk~hI 132 (508)
T PTZ00447 61 LVKINEIFNINK--YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK----LTKKVHI 132 (508)
T ss_pred EEEehhhhcccc--ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc----ccceeEE
Confidence 344555444443 56789999998888888666654443333 444444443 3468999999775 7788999
Q ss_pred EEEEEeccc-cccCC-EEeEEEEeCCCC--CceEEEEE
Q 038990 467 GYVDINLHD-VLHNG-RLKEKYHLINSK--NGAVQVEI 500 (505)
Q Consensus 467 G~~~i~L~~-l~~~~-~~~~~~~L~~~~--~G~i~l~~ 500 (505)
|.+.+.++. ++.+. ...+||-+...+ .++|+|++
T Consensus 133 gdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 133 GQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred EEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 999999974 55544 568999997654 56666664
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.20 E-value=5 Score=36.58 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=38.9
Q ss_pred ceeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCC-CCC---cccEEEEEEC
Q 038990 297 PAKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKV-GTH---DKLGMQVVPL 351 (505)
Q Consensus 297 ~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~-~~d---~~lG~~~i~l 351 (505)
...+|.+...+.+|.|+|++.+.+... ....|.|++++.... .+| ..+|.+-+||
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 346888888899999999999988632 466899999886421 122 3466666665
No 279
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=85.61 E-value=4.2 Score=32.03 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=48.0
Q ss_pred CCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccC
Q 038990 283 SDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSL 354 (505)
Q Consensus 283 ~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l 354 (505)
++-.+.+.+++... .+|..+ ...+..|++.|.+.+. .+..|++.||-.|. ..+.|...+.|++.
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 67788888887654 456553 3357899999999995 36789999998874 35777777777773
No 280
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=85.19 E-value=3.4 Score=37.48 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=34.8
Q ss_pred EEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCCC--CccEEEEEeccc
Q 038990 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRSK--ESLGYVDINLHD 475 (505)
Q Consensus 417 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~d--~~lG~~~i~L~~ 475 (505)
..|.+..++.+|.|+|+|...++..... ..|.+++++.... .+++ ..+|...++|.+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~--~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCK--ESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---S--SSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccc--cccCccceeEEEEEEeee
Confidence 4788889999999999999999765333 3788999986542 2222 799999999987
No 281
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.62 E-value=6.5 Score=35.14 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=53.8
Q ss_pred CCCcEEEEEECCeecceeeeeeeC--CCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 282 ASDPYVQLSLSGERIPAKKTSVKM--KTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 282 ~~dpyv~v~l~~~~~~~~~T~~~~--~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+..-|+++.++++.. .+|+... ....-.+||.|.+.+.. --..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 456799999998765 3554433 33334678999999976 45789999999886 6789999999998765544
No 282
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.00 E-value=6.2 Score=32.34 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=48.6
Q ss_pred EEEEEEcC-eEEEeecccCCCCCccCceEEEEeeCCCC------CCeEEEEEEEccCCccCCCCCccEEEEEeccccccC
Q 038990 407 YAVVICRG-EQKKTKMIKKCRDPIWNEEFQFDFEEAPL------KEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 407 yv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~------~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
||.+.+.. +.+.|.++. ..+|.+|-+-.|.+..... ...+.++++... ...-..+|.+.+++.+++++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~----g~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL----GSDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-----SS-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec----cCCeEEEEEEEeechhhhcC
Confidence 34444433 445666665 8899999999999875421 347899998754 22357999999999999974
Q ss_pred C--EEeEEEEeCCCC---CceEEEEEEEE
Q 038990 480 G--RLKEKYHLINSK---NGAVQVEIKWK 503 (505)
Q Consensus 480 ~--~~~~~~~L~~~~---~G~i~l~~~~~ 503 (505)
. .+...-.|.+.. -|.|...++.+
T Consensus 77 ~~~~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 77 NGERIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -S--EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred CCceEEEEEEEeccCCCeEEEEEEEEEec
Confidence 3 466667775542 47777666654
No 283
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.03 E-value=5.7 Score=36.11 Aligned_cols=57 Identities=14% Similarity=0.318 Sum_probs=41.9
Q ss_pred EEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCccCCC-CCccEEEEEeccc
Q 038990 417 KKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLRLRS-KESLGYVDINLHD 475 (505)
Q Consensus 417 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~~~~-d~~lG~~~i~L~~ 475 (505)
.+|.+..++.+|.|+|++.+.++..... ..|.+++++.... ..+ ...+|-.-++|-+
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~--~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTK--DKGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeec--cCCCCCceEEEEEeecc
Confidence 4788999999999999999999765333 3688888775432 122 2679988888843
No 284
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=77.38 E-value=25 Score=31.88 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=40.9
Q ss_pred eeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCC--CC-------CCcccEEEEEECcc
Q 038990 298 AKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEK--VG-------THDKLGMQVVPLRS 353 (505)
Q Consensus 298 ~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~--~~-------~d~~lG~~~i~l~~ 353 (505)
...|.+...+.+|.|+|++.+.+... ....|.|+.|+.+- .. ....+|.+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888899999999999887633 45689999998651 11 12457888777755
No 285
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=77.29 E-value=8.3 Score=35.17 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=42.3
Q ss_pred EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCc-cCCCCCccEEEEEecc
Q 038990 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGL-RLRSKESLGYVDINLH 474 (505)
Q Consensus 416 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~-~~~~d~~lG~~~i~L~ 474 (505)
..+|.+.+...+|.|+|++...++..... ..|.+++++..... .......+|-.-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 35888889999999999999998755333 37889987754310 0122367998888885
No 286
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=74.53 E-value=11 Score=33.85 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=39.2
Q ss_pred eeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCC-----CCCcccEEEEEECcc
Q 038990 299 KKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKV-----GTHDKLGMQVVPLRS 353 (505)
Q Consensus 299 ~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~-----~~d~~lG~~~i~l~~ 353 (505)
++|-+..+ .+|.|+|++.+.+... ....|.|++|+...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999988643 367899999997632 235678888888765
No 287
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=74.02 E-value=3.9 Score=45.28 Aligned_cols=98 Identities=14% Similarity=0.275 Sum_probs=74.9
Q ss_pred CCCCCEEEEEEcCeEE-EeecccCC-CCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccC
Q 038990 402 HHNNPYAVVICRGEQK-KTKMIKKC-RDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHN 479 (505)
Q Consensus 402 ~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 479 (505)
.+.++|+.+.+..... +|....+. .+|.|.+.|+..+... ...+++.+.+.+- .+....+|.+.++...++.+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~---~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV---PGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc---ccceeEEEEeccchhhhhcc
Confidence 3579999999976654 88888776 8999999998887664 3478888877762 34478999999999999998
Q ss_pred CEEeEEEEeCCCC------CceEEEEEEEEe
Q 038990 480 GRLKEKYHLINSK------NGAVQVEIKWKA 504 (505)
Q Consensus 480 ~~~~~~~~L~~~~------~G~i~l~~~~~~ 504 (505)
....+|++..+.. ...+.+++.+++
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEe
Confidence 8788999987532 345556666665
No 288
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=70.07 E-value=13 Score=33.47 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=41.0
Q ss_pred eeeeeeeCCCCCCeEceeEEEEeecC--CCCEEEEEEEEcCCCCC------CcccEEEEEECcc
Q 038990 298 AKKTSVKMKTLNPEWNEDFKLTVKDP--ETQVLQLHVYDWEKVGT------HDKLGMQVVPLRS 353 (505)
Q Consensus 298 ~~~T~~~~~t~nP~wne~f~~~v~~~--~~~~L~v~v~d~d~~~~------d~~lG~~~i~l~~ 353 (505)
...|.+...+.+|.|+|++.+.+... ....|.|+.|+.+--.+ ...+|.+-+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45788888999999999999988643 35689999998542211 2457887777753
No 289
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=70.04 E-value=9.1 Score=37.10 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=67.9
Q ss_pred eEEEEEeeecCCCCC----C-CCCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccC
Q 038990 387 VGKATEYGAKDLEGK----H-HNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRL 460 (505)
Q Consensus 387 ~a~v~v~~a~~L~~~----~-~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~ 460 (505)
|..+.+.++++|... | .-+-||.+......+ +|.+-.....-.|.|.|+..+.+. +.+.+-||.+... .-
T Consensus 52 iL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~pq-~R 127 (442)
T KOG1452|consen 52 ILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPPQ-RR 127 (442)
T ss_pred eEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCch-hh
Confidence 447888888888542 2 567788888754432 555555555556889999988764 5788888887632 01
Q ss_pred CCCCccEEEEEeccccccCCEEeEEEEeCCCCCceEEEEEEEE
Q 038990 461 RSKESLGYVDINLHDVLHNGRLKEKYHLINSKNGAVQVEIKWK 503 (505)
Q Consensus 461 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~~~ 503 (505)
.+=+.+| -+.+..+.+ ...++-+-|.-..+|++.+++.+.
T Consensus 128 HKLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 128 HKLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred ccccccc--hhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence 1223455 344444433 223555666666688888877653
No 290
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=67.92 E-value=1.8 Score=46.97 Aligned_cols=91 Identities=18% Similarity=0.362 Sum_probs=71.8
Q ss_pred CchHHHHHHHHhhChhhHHH--HHHHHHHHHHHHHHhc-cCcceeeEEEEeEEecCCCCCeEeEEEEEEc-CCceEEEee
Q 038990 70 DRIDWLNKFVSDLWPYLDKA--ICSTARSNLEPIFAEY-IGKYCIRSVDFKTLTLGTLPPIIHGIKVCET-NENELILEP 145 (505)
Q Consensus 70 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~ 145 (505)
+.+-|||.++.++..-+.+. ..+.+.+.++.++... .|++ +..+--.++.-|..||.|++.++... ......++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 45789999999988654433 5556777777777774 5887 88888899999999999999999986 445567888
Q ss_pred eEEEeCCCcEEEEEEE
Q 038990 146 ALRWAGNPNITLALKF 161 (505)
Q Consensus 146 ~~~~~~~~~i~l~~~~ 161 (505)
|+.|.||..+.++.++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999999877776654
No 291
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=67.27 E-value=24 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=35.3
Q ss_pred CCCEEEEEE--cCeE----EEeecccCCCCCccCceEEEEee--CCCCCCeEEEEEEEcc
Q 038990 404 NNPYAVVIC--RGEQ----KKTKMIKKCRDPIWNEEFQFDFE--EAPLKEKIHIEVKSKR 455 (505)
Q Consensus 404 ~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~i~V~d~~ 455 (505)
++-||++.+ +++. ..|+.+.-...+.|||-.+|.+. +.+.+..|.+++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 467777754 4433 25555555667999998888765 4445568999999864
No 292
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=65.39 E-value=1.2 Score=46.89 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=85.2
Q ss_pred eEEEEEEEeeccCccccC----CCCCCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCC-CCEEEEEEEEc
Q 038990 261 VGILHVKVIRAIRLLKMD----IFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPE-TQVLQLHVYDW 335 (505)
Q Consensus 261 ~g~L~V~v~~a~~L~~~d----~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~-~~~L~v~v~d~ 335 (505)
.|....+++.|.++++-- ..-+.+|++...++.+. .+|+....+.+|+|||. .+...+.+ +..|..
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~---frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~----- 349 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQT---FRTEISDDTEKPIYNED-EREDSDFQSNRYLGN----- 349 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhh---hhhhhhccccccccccc-ccccccchhhHHHhh-----
Confidence 455556666777664321 11245889999988766 48899999999999997 55554332 222333
Q ss_pred CCCCCCcccEEEEEECccCCCCCeeEEEEecccc-CCCCCcccccccccccceEEEEEe--eecCCC--------CCCCC
Q 038990 336 EKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN-TNPNDPQDKKFERKESEVGKATEY--GAKDLE--------GKHHN 404 (505)
Q Consensus 336 d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~-~~~~~~~~~~~~g~~~~~a~v~v~--~a~~L~--------~~~~~ 404 (505)
..+|.|+.++.+-... +.+.-.+. .-..++ +.-+..+.++ ...+++ ..-..
T Consensus 350 ------kiv~~~~~~lndS~A~----f~vq~~~sn~~~~~p--------E~~~~sfnl~~~a~sn~~a~r~~~S~T~~em 411 (975)
T KOG2419|consen 350 ------KIVGYCELDLNDSYAN----FVVQRAKSNFFISEP--------ESTCKSFNLLDPASSNLPALRNRLSKTNYEM 411 (975)
T ss_pred ------hccccccccccchhhh----hhhhhhhccccccCc--------cccceEEEeecCCcccchhhhhccCcccccc
Confidence 3444444444431111 00000000 000000 0001111111 112222 22367
Q ss_pred CCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEc
Q 038990 405 NPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSK 454 (505)
Q Consensus 405 dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~ 454 (505)
||+..+.+|..-.++..-....+|.+++.-.+.+.+-..+-.+.+.+++.
T Consensus 412 ~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~ 461 (975)
T KOG2419|consen 412 DPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSD 461 (975)
T ss_pred CchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHH
Confidence 88888888776666666666777777765555554433333556655543
No 293
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=63.76 E-value=34 Score=30.85 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=41.9
Q ss_pred EEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCCcc---CCCCCccEEEEEeccc
Q 038990 416 QKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRGLR---LRSKESLGYVDINLHD 475 (505)
Q Consensus 416 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~~~---~~~d~~lG~~~i~L~~ 475 (505)
...|.+..++.+|.|+|++...++-...+ ..|.|++++-..... ......+|...++|-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45889999999999999988888755322 378888887432100 1123569999898854
No 294
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=63.75 E-value=36 Score=30.89 Aligned_cols=61 Identities=8% Similarity=0.174 Sum_probs=42.7
Q ss_pred eEEEeecccCCCCCccCceEEEEeeCCCCC-CeEEEEEEEccCC--c----cCCCCCccEEEEEeccc
Q 038990 415 EQKKTKMIKKCRDPIWNEEFQFDFEEAPLK-EKIHIEVKSKRRG--L----RLRSKESLGYVDINLHD 475 (505)
Q Consensus 415 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~i~V~d~~~~--~----~~~~d~~lG~~~i~L~~ 475 (505)
....|.+..++.+|.|+|++...++-.... ..|.+++++..-. . .......+|...++|..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 345889999999999999888888654322 2688888875410 0 01123569999999865
No 295
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=56.06 E-value=40 Score=30.29 Aligned_cols=57 Identities=14% Similarity=0.319 Sum_probs=39.2
Q ss_pred eecccCCCCCccCceEEEEeeCCCC-CCeEEEEEEEccCCcc--CCCCCccEEEEEeccc
Q 038990 419 TKMIKKCRDPIWNEEFQFDFEEAPL-KEKIHIEVKSKRRGLR--LRSKESLGYVDINLHD 475 (505)
Q Consensus 419 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~i~V~d~~~~~~--~~~d~~lG~~~i~L~~ 475 (505)
|.++....+|.|+|++...++.... +..|.+++++...... ......+|.+.++|.+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444999999999999865421 3378899988653200 1346789999999976
No 296
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=49.07 E-value=73 Score=35.66 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=60.7
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEE----cCeE----EEeecccCCCCCccCceEEEEeeCCCC--CCeEEEEEEEcc---
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVIC----RGEQ----KKTKMIKKCRDPIWNEEFQFDFEEAPL--KEKIHIEVKSKR--- 455 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~----~~~~----~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~i~V~d~~--- 455 (505)
+|.++++..+.-....|-+|.|.. |++. +.|.-+..+.+|.||+..+|.+.-.++ ...|.+.|+.-.
T Consensus 346 rI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v~~~~ 425 (1076)
T KOG0904|consen 346 RIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAVKAKA 425 (1076)
T ss_pred EEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEeechh
Confidence 788888776655445566665554 3322 356666668999999988888765433 336777776541
Q ss_pred ----------CCccCCCCCccEEEEEecccccc----CCEEeEEEEe
Q 038990 456 ----------RGLRLRSKESLGYVDINLHDVLH----NGRLKEKYHL 488 (505)
Q Consensus 456 ----------~~~~~~~d~~lG~~~i~L~~l~~----~~~~~~~~~L 488 (505)
....-+.+..+|.+.+.|.|-.+ ++..-+-|+.
T Consensus 426 ~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 426 KSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred ccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 00001235689999988876443 3344444554
No 297
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=46.16 E-value=3.5e+02 Score=28.15 Aligned_cols=88 Identities=11% Similarity=0.221 Sum_probs=47.9
Q ss_pred cCCCCCeEeEEEEEEcCCceEEEeeeEEEeCCCcEEEEEEEeceEEEEEEEEEEEEEEEEEEeeecCCCCCccceEEEEe
Q 038990 121 LGTLPPIIHGIKVCETNENELILEPALRWAGNPNITLALKFFSLQITVQLLDVQIRAAPRIVLKPLVPAFPCFAGIAVSL 200 (505)
Q Consensus 121 lG~~~P~i~~v~~~~~~~~~~~ld~~~~~~~~~~i~l~~~~~~~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf 200 (505)
.|..--+|.+++++. .++.+++.+++.-+ +.|++.+.-+|..+. --..+.+
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~------------------------~~G~i~l~G~P~yD~--~~~~l~l-- 330 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS------------------------LNGTIYLSGRPVYDP--ATQTLRL-- 330 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE------------------------EEEEEEEEEEEEECC--CCCEEEE--
Confidence 666777788888887 44444432222211 555555555554432 2233333
Q ss_pred cCCceEEEEeeEeccccccchhhHHHHHHHHHHHHHhhccCCC
Q 038990 201 MEKPEVDFGLKLVGGDMMAIPGLYQFIQETIRNQISALYLWPQ 243 (505)
Q Consensus 201 ~~~P~~d~~~~~~g~~i~~iP~l~~~i~~~i~~~l~~~~v~P~ 243 (505)
-++||+++.-+ . -.-...-+.+..|.+.+++.++.|=
T Consensus 331 ---~dld~~~~t~~--~-l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 331 ---EDLDFDLDTKN--F-LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred ---EeeEEEecccc--h-HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 46777776532 1 1222334567788888888776543
No 298
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=45.46 E-value=1.7e+02 Score=26.04 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=50.8
Q ss_pred EEeeecCCCCCCCCCCEEEEEEc---------C-e-EEEeecccC-----CCCCccCceEEEEeeCCCCC--CeEEEEEE
Q 038990 391 TEYGAKDLEGKHHNNPYAVVICR---------G-E-QKKTKMIKK-----CRDPIWNEEFQFDFEEAPLK--EKIHIEVK 452 (505)
Q Consensus 391 ~v~~a~~L~~~~~~dpyv~v~~~---------~-~-~~kT~v~~~-----t~nP~wne~f~f~v~~~~~~--~~l~i~V~ 452 (505)
.|..|.+... .+-||+..+. + . .-.|...+. ...-.||..|++........ .+|.++||
T Consensus 7 ~I~~a~~f~~---~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~ 83 (168)
T PF07162_consen 7 EIESAEGFEE---DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVY 83 (168)
T ss_pred EEEEEECCCC---CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEE
Confidence 4556776643 5778888762 1 2 235555443 34466998888877654322 38999999
Q ss_pred EccCCccCCCCCccEEEEEecc
Q 038990 453 SKRRGLRLRSKESLGYVDINLH 474 (505)
Q Consensus 453 d~~~~~~~~~d~~lG~~~i~L~ 474 (505)
..+. .+++.+.|...+.|-
T Consensus 84 ~~D~---~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 84 SLDS---WGRDRVEGYGFCHLP 102 (168)
T ss_pred EEcc---cCCeEEeEEeEEEeC
Confidence 9884 778888887766663
No 299
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=42.29 E-value=37 Score=27.77 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=32.4
Q ss_pred eeeeeeCCCCCCeEceeEEEEeecC-------CCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCe
Q 038990 299 KKTSVKMKTLNPEWNEDFKLTVKDP-------ETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNET 359 (505)
Q Consensus 299 ~~T~~~~~t~nP~wne~f~~~v~~~-------~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~ 359 (505)
..|.++. ..+|.+|-+-.+.|... .+..+.++++..- ....+.+|.+.+++..+.+...
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence 5677766 78999998888888632 2567899999875 2346789999999998885443
No 300
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=40.55 E-value=12 Score=29.31 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=35.0
Q ss_pred ChhhHhhhCCCCCCceeCCCCCchHHHHHHHHhhChhhHHHHH
Q 038990 49 DTSSVLDVFPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAIC 91 (505)
Q Consensus 49 ~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 91 (505)
|.+-++--|+++|+|+--.|.-.-.-.|.+...+|.+.+.+++
T Consensus 28 D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 28 DKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred cceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 3344444578999999988888888899999999998888877
No 301
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.90 E-value=11 Score=40.79 Aligned_cols=91 Identities=14% Similarity=0.031 Sum_probs=56.4
Q ss_pred CCCCEEEEEEcCeEE-EeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccEEEEEeccccccCC-
Q 038990 403 HNNPYAVVICRGEQK-KTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLGYVDINLHDVLHNG- 480 (505)
Q Consensus 403 ~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~- 480 (505)
..+||+.+.+.-+.. ++.+.+.+..|.|+++|...+.+. ..+.|.|+.... ...+.+...+++..+++....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~---~~~~i~v~~~~~---~~~~~~~a~~~~~~e~~k~~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG---GAKNIIVLLKSP---DPKALSEAQLSLQEESQKLLAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC---CceEEEEEecCC---cchhhHHHhHHHHHHHHHHHhh
Confidence 578898888865543 555577899999999999998764 468888887742 344444444444444444321
Q ss_pred EEeEEEEeCCCCCceEEEEEE
Q 038990 481 RLKEKYHLINSKNGAVQVEIK 501 (505)
Q Consensus 481 ~~~~~~~L~~~~~G~i~l~~~ 501 (505)
.-.-|..+. ..|.+...+.
T Consensus 101 ~~~~w~~~~--~~g~~~~~~~ 119 (694)
T KOG0694|consen 101 EQRLWVLIE--ELGTLLKPAA 119 (694)
T ss_pred hhhhccccc--cccceeeeec
Confidence 112344432 2465555444
No 302
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=37.08 E-value=22 Score=23.39 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=7.3
Q ss_pred HHHhheeeeeecc
Q 038990 21 FLIAFFIFVHSDA 33 (505)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (505)
+++++++|.||++
T Consensus 26 ~vl~~~l~~~~rR 38 (40)
T PF08693_consen 26 IVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHhheEEec
Confidence 4455666666653
No 303
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=31.73 E-value=3.7e+02 Score=23.81 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=60.1
Q ss_pred EEeeccCccccCCCCCCCcEEEEEE--CCee-----cc-eeeeeeeCC-----CCCCeEceeEEEEeecC--C-CCEEEE
Q 038990 267 KVIRAIRLLKMDIFGASDPYVQLSL--SGER-----IP-AKKTSVKMK-----TLNPEWNEDFKLTVKDP--E-TQVLQL 330 (505)
Q Consensus 267 ~v~~a~~L~~~d~~g~~dpyv~v~l--~~~~-----~~-~~~T~~~~~-----t~nP~wne~f~~~v~~~--~-~~~L~v 330 (505)
.|.+|.+. ..++-||+..+ +++. .. ...|.+... +..-.||.-|++..... . -..|.+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 45667654 33467888766 2211 11 245555432 33457998777766532 2 257999
Q ss_pred EEEEcCCCCCCcccEEEEEECccCCCCCeeEEEEecccc
Q 038990 331 HVYDWEKVGTHDKLGMQVVPLRSLTPNETKELTLDLVKN 369 (505)
Q Consensus 331 ~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~l~l~~~ 369 (505)
+||..|..+++...|...+.+..- ++ .+...+++++.
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP~~-pG-~h~~~v~~wrP 117 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLPTQ-PG-RHEVEVPTWRP 117 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeCCC-Cc-eEEEEEEEEee
Confidence 999999999999998877777544 33 45566666654
No 304
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.67 E-value=24 Score=38.22 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCcEEEEEECCeecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCc
Q 038990 282 ASDPYVQLSLSGERIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHD 342 (505)
Q Consensus 282 ~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~ 342 (505)
..|||+.+.+.-... ..+.+.+.+..|.|+|+|...+.. ...+.+.+|.......+.
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~ 83 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKAL 83 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhh
Confidence 458999888765443 244557789999999999999765 456888888875444443
No 305
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.56 E-value=3.4e+02 Score=23.84 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.9
Q ss_pred CCCCC-eEceeEEEEeecCC---CCEEEEEEEEcCCCCCCcccEEEEEECccCCCC
Q 038990 306 KTLNP-EWNEDFKLTVKDPE---TQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPN 357 (505)
Q Consensus 306 ~t~nP-~wne~f~~~v~~~~---~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~ 357 (505)
+-.|| +||--++....... =..|.+.||..|..++|...|...+.+..-...
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP~~pgr 114 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIPTEPGR 114 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecCcCCCc
Confidence 33444 57755555554322 246889999999999999999998887654433
No 306
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=28.18 E-value=31 Score=28.01 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=30.9
Q ss_pred CCCCCCceeCCCCCchHHHHHHHHhhChhhHHHHH
Q 038990 57 FPEIPLWVKHPDYDRIDWLNKFVSDLWPYLDKAIC 91 (505)
Q Consensus 57 ~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 91 (505)
|++||+|+.-.|..-...++.+-.-.|.+...++.
T Consensus 36 LgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 36 LGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred cchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 57899999999998899999999999988887775
No 307
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=26.12 E-value=44 Score=37.43 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCCcEEEEEECCeecceeeeeeeCCC-CCCeEceeEEEEeecCCCCEEEEEEEEcCCCCCCcccEEEEEECccCCCCCee
Q 038990 282 ASDPYVQLSLSGERIPAKKTSVKMKT-LNPEWNEDFKLTVKDPETQVLQLHVYDWEKVGTHDKLGMQVVPLRSLTPNETK 360 (505)
Q Consensus 282 ~~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~wne~f~~~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~l~~l~~~~~~ 360 (505)
..++|+.+.+..... .+|....+. .+|.|.+.|....... ...+.+++-+.+..+....+|.+.++...+..+...
T Consensus 137 ~~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~ 213 (887)
T KOG1329|consen 137 TLENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRI 213 (887)
T ss_pred hccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccccc
Confidence 369999999986654 356665565 6899999998877654 356888888887777678999999999888887555
Q ss_pred EEEEecc
Q 038990 361 ELTLDLV 367 (505)
Q Consensus 361 ~~~l~l~ 367 (505)
..|++.+
T Consensus 214 ~~~~~Il 220 (887)
T KOG1329|consen 214 GGWFPIL 220 (887)
T ss_pred cceeeee
Confidence 5555543
No 308
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=24.56 E-value=47 Score=37.06 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCcCCeEEEEEEEeeccCccccCCCCCCCcEEEEEECCe--ecceeeeeeeCCCCCCeEceeEEEEeecCCCCEEEEEEE
Q 038990 256 AIKKPVGILHVKVIRAIRLLKMDIFGASDPYVQLSLSGE--RIPAKKTSVKMKTLNPEWNEDFKLTVKDPETQVLQLHVY 333 (505)
Q Consensus 256 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~~L~v~v~ 333 (505)
......|-+.+.+++|..+.. ...-||...+..- ...+.+|.++.+|..|.||++++..+.. .+..++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 455567999999999998864 3467887765431 2234588999999999999999988854 456667776
Q ss_pred EcC
Q 038990 334 DWE 336 (505)
Q Consensus 334 d~d 336 (505)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 654
No 309
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=24.40 E-value=3.5e+02 Score=22.58 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=48.6
Q ss_pred EEEEEeeccCccccCCCCCCCcEEEEEECCeecceeeeeeeCCCCCCeE-ceeEEEEeec--CCCCEEEEEEEEcCC-CC
Q 038990 264 LHVKVIRAIRLLKMDIFGASDPYVQLSLSGERIPAKKTSVKMKTLNPEW-NEDFKLTVKD--PETQVLQLHVYDWEK-VG 339 (505)
Q Consensus 264 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~w-ne~f~~~v~~--~~~~~L~v~v~d~d~-~~ 339 (505)
|.++-+.-.++|.-+..+.+.||++++-++.... .|.... ...... ...+.+.+.. +-...+.+++|+.+. ..
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVF--STSKSY-EDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEE--ETCCTC-CCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEE--Eeccce-eccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 3444444455665555677899999998876531 111111 111111 1223333221 113458899999863 45
Q ss_pred CCcccEEEEEECccCC
Q 038990 340 THDKLGMQVVPLRSLT 355 (505)
Q Consensus 340 ~d~~lG~~~i~l~~l~ 355 (505)
.++.+.++.+.-.-+.
T Consensus 83 ~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 83 SKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCEEEEEEEEEGGGSB
T ss_pred ccCeEEEEEEeeeeee
Confidence 6677888888777666
No 310
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=24.19 E-value=16 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=13.8
Q ss_pred hhhhhhhccchhhhHHHHHhheeeeeec
Q 038990 5 SFLLGIFGFGIGIPIGFLIAFFIFVHSD 32 (505)
Q Consensus 5 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 32 (505)
|+++||+-+..-..+.+.++..+|-.|+
T Consensus 14 sa~vgyLDyvL~PaLa~fi~lt~yal~r 41 (46)
T PF11431_consen 14 SALVGYLDYVLLPALAVFIGLTIYALWR 41 (46)
T ss_dssp HHHHSHTTTSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665555554444444444444444
No 311
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=23.16 E-value=4.3e+02 Score=28.57 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=64.7
Q ss_pred EEEEeeecCCCCC-CCCCCEEEEEEcCeEEEeecccCCCCCccCceEEEEeeCCCCCCeEEEEEEEccCCccCCCCCccE
Q 038990 389 KATEYGAKDLEGK-HHNNPYAVVICRGEQKKTKMIKKCRDPIWNEEFQFDFEEAPLKEKIHIEVKSKRRGLRLRSKESLG 467 (505)
Q Consensus 389 ~v~v~~a~~L~~~-~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~i~V~d~~~~~~~~~d~~lG 467 (505)
.|.|.+.++|.+- .+-=.||.+.+.+.+..|.-.. ...|.|+.+=.|.-.++ + ..+++.++...++..--.|+-||
T Consensus 344 evvvmevqglksvapnrivyctmevegeklqtdqae-askp~wgtqgdfstthp-l-pvvkvklftestgvlaledkelg 420 (1218)
T KOG3543|consen 344 EVVVMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-L-PVVKVKLFTESTGVLALEDKELG 420 (1218)
T ss_pred eEEEeeeccccccCCCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-C-ceeEEEEEeecceeEEeechhhC
Confidence 7888888888653 2334588888888776665433 45799998878887765 2 36788888766532223578899
Q ss_pred EEEEeccccccCCEEeEEEEeCCC
Q 038990 468 YVDINLHDVLHNGRLKEKYHLINS 491 (505)
Q Consensus 468 ~~~i~L~~l~~~~~~~~~~~L~~~ 491 (505)
++.+.-..= ...-.+|+.+.-.
T Consensus 421 rvil~ptpn--s~ks~ewh~mtvp 442 (1218)
T KOG3543|consen 421 RVILQPTPN--SAKSPEWHTMTVP 442 (1218)
T ss_pred eEEEecCCC--CcCCccceeeecC
Confidence 987754321 1223588888643
No 312
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=21.89 E-value=2.9e+02 Score=31.27 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=44.6
Q ss_pred EEEEEEEeeccCccccCCCCCCCcEEEEEE----CCeecce-eeeeeeCCCCCCeEceeEEEEee--c-CCCCEEEEEEE
Q 038990 262 GILHVKVIRAIRLLKMDIFGASDPYVQLSL----SGERIPA-KKTSVKMKTLNPEWNEDFKLTVK--D-PETQVLQLHVY 333 (505)
Q Consensus 262 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~l----~~~~~~~-~~T~~~~~t~nP~wne~f~~~v~--~-~~~~~L~v~v~ 333 (505)
.-++|+++++.++... ...|-+|.+.. |+...-+ ..|+-+..+.+|.||+..+|.+. + |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 3567777777665322 23355655544 4444322 35555566889999998888876 2 34567888888
Q ss_pred Ec
Q 038990 334 DW 335 (505)
Q Consensus 334 d~ 335 (505)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 65
No 313
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=21.45 E-value=4.8e+02 Score=21.73 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=48.7
Q ss_pred EEEEeeecCCCCCCCCCCEEEEEEcCeEE-EeecccCCCCCcc-CceEEEEeeCC-CCCCeEEEEEEEccCCccCCCCCc
Q 038990 389 KATEYGAKDLEGKHHNNPYAVVICRGEQK-KTKMIKKCRDPIW-NEEFQFDFEEA-PLKEKIHIEVKSKRRGLRLRSKES 465 (505)
Q Consensus 389 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~w-ne~f~f~v~~~-~~~~~l~i~V~d~~~~~~~~~d~~ 465 (505)
.|.+...=++...+.++||++++-++... .|...... .... ...+.+.+... .+.-.+.|++++.+.. ...++.
T Consensus 10 ~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~--~~~~~~ 86 (134)
T PF10409_consen 10 SIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSS--SMSKEK 86 (134)
T ss_dssp EEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETT--ECCCEE
T ss_pred EEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCc--ccccCe
Confidence 34444443443345789999999887765 33332222 1111 23344444322 2234688999988632 345677
Q ss_pred cEEEEEeccccc
Q 038990 466 LGYVDINLHDVL 477 (505)
Q Consensus 466 lG~~~i~L~~l~ 477 (505)
+.++.+.-.-+.
T Consensus 87 ~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 87 MFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEGGGSB
T ss_pred EEEEEEeeeeee
Confidence 888888776665
No 314
>PRK11677 hypothetical protein; Provisional
Probab=21.11 E-value=52 Score=28.12 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=12.5
Q ss_pred hhhhhhhccchhhhHHHHHh
Q 038990 5 SFLLGIFGFGIGIPIGFLIA 24 (505)
Q Consensus 5 ~~~~g~~g~~~~~~~~~~~~ 24 (505)
.|+++..||.+|.++|.+++
T Consensus 2 ~W~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAM 21 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 38888877777655544433
No 315
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=20.64 E-value=67 Score=28.00 Aligned_cols=7 Identities=14% Similarity=0.786 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 038990 73 DWLNKFV 79 (505)
Q Consensus 73 ~WlN~~l 79 (505)
.|.|.++
T Consensus 100 ~~w~~l~ 106 (154)
T PF04478_consen 100 KWWYSLL 106 (154)
T ss_pred HHHHHHh
Confidence 4444444
No 316
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=20.41 E-value=2.9e+02 Score=22.60 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=38.4
Q ss_pred eEEEEEEEccCCccCCCCCccEEEEEecccccc--------------CCEEeEEEEeCCC---CCceEEEEEEEE
Q 038990 446 KIHIEVKSKRRGLRLRSKESLGYVDINLHDVLH--------------NGRLKEKYHLINS---KNGAVQVEIKWK 503 (505)
Q Consensus 446 ~l~i~V~d~~~~~~~~~d~~lG~~~i~L~~l~~--------------~~~~~~~~~L~~~---~~G~i~l~~~~~ 503 (505)
.|.+.++.............+|.+.+++.+... .....+.|+|.+. ..|+|.+.++..
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLS 104 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEe
Confidence 577766654321013456789999999988762 1144678999874 369998887753
Done!