Query 038991
Match_columns 287
No_of_seqs 137 out of 1487
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 2.5E-18 5.3E-23 143.0 -4.3 257 4-276 98-391 (419)
2 KOG4341 F-box protein containi 99.0 3.8E-12 8.3E-17 110.6 -7.3 142 6-176 74-226 (483)
3 PF12937 F-box-like: F-box-lik 98.9 7.6E-10 1.6E-14 68.4 3.1 36 4-39 1-36 (47)
4 PF00646 F-box: F-box domain; 98.6 1.8E-08 3.9E-13 62.5 1.1 38 4-41 3-40 (48)
5 PLN00113 leucine-rich repeat r 98.5 7.5E-08 1.6E-12 96.9 4.9 104 93-201 93-198 (968)
6 PLN00113 leucine-rich repeat r 98.4 1.5E-07 3.3E-12 94.6 4.7 81 93-176 164-246 (968)
7 smart00256 FBOX A Receptor for 98.4 1.9E-07 4E-12 55.7 2.4 34 7-40 1-34 (41)
8 KOG2120 SCF ubiquitin ligase, 98.2 6.9E-08 1.5E-12 81.3 -3.7 152 89-246 230-391 (419)
9 KOG4194 Membrane glycoprotein 98.0 8.8E-07 1.9E-11 80.9 -0.1 59 93-152 173-233 (873)
10 KOG3207 Beta-tubulin folding c 98.0 3.8E-07 8.2E-12 80.5 -3.0 154 93-254 146-313 (505)
11 cd00116 LRR_RI Leucine-rich re 97.9 5.8E-07 1.3E-11 78.7 -4.0 59 118-176 108-175 (319)
12 cd00116 LRR_RI Leucine-rich re 97.9 1.1E-06 2.4E-11 76.9 -2.9 185 93-283 108-318 (319)
13 PF14580 LRR_9: Leucine-rich r 97.8 6.8E-07 1.5E-11 71.1 -4.0 101 94-201 20-123 (175)
14 PLN03210 Resistant to P. syrin 97.8 2.7E-05 5.9E-10 79.7 5.2 32 117-148 610-641 (1153)
15 KOG3207 Beta-tubulin folding c 97.7 1.3E-06 2.9E-11 77.0 -5.1 179 94-284 122-313 (505)
16 PF07723 LRR_2: Leucine Rich R 97.7 6.4E-05 1.4E-09 39.7 3.1 25 142-166 1-26 (26)
17 KOG4194 Membrane glycoprotein 97.5 5.9E-05 1.3E-09 69.4 2.9 128 93-232 149-280 (873)
18 PLN03210 Resistant to P. syrin 97.5 0.00014 3E-09 74.6 5.3 85 112-201 628-714 (1153)
19 PF14580 LRR_9: Leucine-rich r 97.5 3.3E-06 7.2E-11 67.2 -5.1 124 115-249 16-147 (175)
20 KOG1909 Ran GTPase-activating 97.5 1.9E-05 4.1E-10 68.1 -1.1 139 139-285 90-254 (382)
21 KOG4341 F-box protein containi 97.3 4.1E-05 8.9E-10 67.5 -1.0 162 110-279 286-459 (483)
22 KOG1909 Ran GTPase-activating 97.1 8.6E-05 1.9E-09 64.1 -0.8 182 94-284 93-310 (382)
23 KOG3665 ZYG-1-like serine/thre 97.1 0.00013 2.8E-09 70.3 0.1 144 118-275 122-278 (699)
24 KOG2739 Leucine-rich acidic nu 97.1 3.6E-05 7.9E-10 63.9 -3.1 135 94-234 19-156 (260)
25 PRK15387 E3 ubiquitin-protein 96.8 0.0014 2.9E-08 64.0 4.4 55 92-153 200-255 (788)
26 PF13855 LRR_8: Leucine rich r 96.8 0.00034 7.3E-09 45.4 0.1 57 118-176 1-59 (61)
27 PRK15387 E3 ubiquitin-protein 96.7 0.002 4.3E-08 62.8 4.7 52 93-152 222-274 (788)
28 PRK15370 E3 ubiquitin-protein 96.5 0.00084 1.8E-08 65.4 0.6 55 93-153 241-296 (754)
29 KOG0444 Cytoskeletal regulator 96.5 3.2E-05 6.9E-10 71.7 -8.6 172 94-282 198-372 (1255)
30 KOG0617 Ras suppressor protein 96.5 4.6E-05 1E-09 59.6 -6.6 146 94-252 34-183 (264)
31 KOG2982 Uncharacterized conser 96.4 0.00047 1E-08 58.6 -1.5 158 118-285 45-212 (418)
32 KOG0444 Cytoskeletal regulator 96.4 0.00011 2.3E-09 68.3 -5.8 162 107-285 92-258 (1255)
33 KOG0618 Serine/threonine phosp 96.2 0.00018 4E-09 69.3 -5.2 125 116-252 381-510 (1081)
34 KOG1947 Leucine rich repeat pr 96.2 0.00036 7.8E-09 64.5 -3.3 173 93-274 188-389 (482)
35 KOG2982 Uncharacterized conser 96.2 0.00054 1.2E-08 58.3 -2.1 180 93-284 71-261 (418)
36 PRK15370 E3 ubiquitin-protein 96.2 0.0034 7.3E-08 61.3 2.9 54 93-152 199-253 (754)
37 KOG0281 Beta-TrCP (transducin 96.1 0.0021 4.5E-08 55.5 0.7 37 1-37 72-112 (499)
38 KOG1947 Leucine rich repeat pr 96.0 0.001 2.2E-08 61.5 -1.9 134 139-280 186-329 (482)
39 KOG3665 ZYG-1-like serine/thre 95.9 0.0015 3.3E-08 63.0 -0.9 137 139-284 120-262 (699)
40 PF13855 LRR_8: Leucine rich r 95.3 0.012 2.6E-07 37.9 1.9 55 94-150 2-59 (61)
41 KOG2997 F-box protein FBX9 [Ge 95.1 0.0086 1.9E-07 51.2 0.9 34 4-37 107-145 (366)
42 KOG0618 Serine/threonine phosp 94.9 0.0012 2.7E-08 63.8 -5.1 144 118-280 359-508 (1081)
43 KOG1644 U2-associated snRNP A' 94.8 0.055 1.2E-06 43.8 4.8 59 117-176 63-123 (233)
44 KOG1859 Leucine-rich repeat pr 94.8 0.00055 1.2E-08 64.7 -7.5 107 163-284 184-291 (1096)
45 KOG1259 Nischarin, modulator o 94.8 0.0016 3.5E-08 55.5 -4.2 122 118-253 284-410 (490)
46 PF12799 LRR_4: Leucine Rich r 94.6 0.01 2.2E-07 35.7 0.2 30 119-148 2-31 (44)
47 PF12799 LRR_4: Leucine Rich r 94.4 0.0098 2.1E-07 35.7 -0.2 37 141-181 1-38 (44)
48 PLN03150 hypothetical protein; 94.4 0.028 6.1E-07 54.1 2.7 80 119-201 419-500 (623)
49 PLN03215 ascorbic acid mannose 94.0 0.03 6.4E-07 49.9 1.9 38 3-40 3-41 (373)
50 KOG1644 U2-associated snRNP A' 93.9 0.1 2.2E-06 42.2 4.5 105 118-232 42-151 (233)
51 PLN03150 hypothetical protein; 93.8 0.034 7.3E-07 53.6 2.0 70 109-181 433-504 (623)
52 COG4886 Leucine-rich repeat (L 93.8 0.015 3.2E-07 52.7 -0.6 79 118-201 116-196 (394)
53 KOG3864 Uncharacterized conser 93.5 0.0061 1.3E-07 49.1 -3.0 90 109-201 92-186 (221)
54 COG4886 Leucine-rich repeat (L 93.5 0.011 2.4E-07 53.5 -1.9 169 94-284 117-289 (394)
55 PRK15386 type III secretion pr 93.4 0.069 1.5E-06 48.3 3.1 132 93-251 52-186 (426)
56 KOG0617 Ras suppressor protein 92.9 0.0054 1.2E-07 48.3 -4.1 128 93-233 56-185 (264)
57 KOG4658 Apoptotic ATPase [Sign 92.7 0.027 5.9E-07 56.1 -0.6 81 93-176 571-652 (889)
58 KOG1259 Nischarin, modulator o 91.5 0.15 3.3E-06 43.9 2.6 64 110-176 174-247 (490)
59 KOG0274 Cdc4 and related F-box 90.7 0.098 2.1E-06 49.3 0.8 37 1-37 105-141 (537)
60 COG5238 RNA1 Ran GTPase-activa 90.3 0.071 1.5E-06 45.2 -0.4 122 158-284 84-226 (388)
61 PF13013 F-box-like_2: F-box-l 90.1 0.18 4E-06 36.7 1.7 38 4-41 22-63 (109)
62 PRK15386 type III secretion pr 89.5 0.83 1.8E-05 41.5 5.7 115 91-231 70-187 (426)
63 KOG0472 Leucine-rich repeat pr 88.4 0.0021 4.6E-08 56.9 -11.1 161 107-285 80-265 (565)
64 KOG0472 Leucine-rich repeat pr 87.8 0.027 5.9E-07 50.2 -4.7 101 94-201 184-285 (565)
65 PF13504 LRR_7: Leucine rich r 85.4 0.51 1.1E-05 21.9 1.0 14 119-132 2-15 (17)
66 KOG2739 Leucine-rich acidic nu 85.4 0.37 8.1E-06 40.5 0.9 83 93-176 65-153 (260)
67 smart00367 LRR_CC Leucine-rich 84.3 0.41 8.8E-06 24.9 0.5 12 165-176 1-12 (26)
68 KOG3864 Uncharacterized conser 82.6 0.27 6E-06 39.8 -0.9 62 114-176 121-186 (221)
69 PF00560 LRR_1: Leucine Rich R 80.7 1.1 2.3E-05 22.3 1.2 16 119-134 1-16 (22)
70 KOG2123 Uncharacterized conser 80.0 0.016 3.5E-07 49.1 -9.0 78 94-176 20-98 (388)
71 KOG4237 Extracellular matrix p 79.2 1.3 2.8E-05 39.8 2.0 62 219-286 272-336 (498)
72 KOG4658 Apoptotic ATPase [Sign 77.5 3 6.4E-05 42.0 4.2 81 118-201 523-605 (889)
73 KOG2123 Uncharacterized conser 76.8 0.16 3.4E-06 43.3 -4.1 81 93-176 41-127 (388)
74 KOG0531 Protein phosphatase 1, 71.7 0.52 1.1E-05 43.0 -2.5 36 116-152 116-152 (414)
75 PF13516 LRR_6: Leucine Rich r 70.5 1.9 4E-05 21.7 0.5 14 165-179 1-14 (24)
76 KOG0531 Protein phosphatase 1, 67.2 1.8 4E-05 39.4 0.1 106 113-232 90-197 (414)
77 KOG4408 Putative Mg2+ and Co2+ 62.1 2.4 5.2E-05 37.0 -0.2 39 4-42 8-46 (386)
78 KOG4579 Leucine-rich repeat (L 58.2 2.3 5.1E-05 32.6 -0.8 55 119-176 54-110 (177)
79 KOG4579 Leucine-rich repeat (L 52.9 2.6 5.6E-05 32.4 -1.3 73 80-153 39-113 (177)
80 KOG4237 Extracellular matrix p 51.5 3.7 7.9E-05 37.0 -0.8 10 139-148 272-281 (498)
81 KOG1859 Leucine-rich repeat pr 46.5 2.2 4.7E-05 41.5 -3.1 101 139-253 185-290 (1096)
82 COG5238 RNA1 Ran GTPase-activa 42.7 25 0.00053 30.4 2.8 38 139-176 90-130 (388)
83 smart00370 LRR Leucine-rich re 39.3 16 0.00034 18.5 0.8 15 271-285 1-15 (26)
84 smart00369 LRR_TYP Leucine-ric 39.3 16 0.00034 18.5 0.8 15 271-285 1-15 (26)
85 KOG0532 Leucine-rich repeat (L 36.8 1.4 3E-05 41.4 -5.8 102 120-234 145-247 (722)
86 KOG3926 F-box proteins [Amino 36.7 18 0.00038 30.9 1.1 48 4-51 202-256 (332)
87 PF13306 LRR_5: Leucine rich r 32.9 31 0.00067 25.1 1.8 58 115-176 9-68 (129)
88 smart00365 LRR_SD22 Leucine-ri 29.7 29 0.00064 18.0 0.8 15 271-285 1-15 (26)
89 COG4829 CatC1 Muconolactone de 28.6 12 0.00026 25.8 -1.0 35 7-41 11-47 (98)
90 PF05725 FNIP: FNIP Repeat; I 27.1 89 0.0019 18.2 2.8 7 222-228 13-19 (44)
91 PF08387 FBD: FBD; InterPro: 27.1 69 0.0015 19.5 2.4 34 141-174 14-50 (51)
92 KOG0532 Leucine-rich repeat (L 23.8 11 0.00023 35.8 -2.5 98 93-201 143-244 (722)
93 PF06881 Elongin_A: RNA polyme 23.0 79 0.0017 22.8 2.4 30 2-31 2-31 (109)
94 smart00364 LRR_BAC Leucine-ric 22.4 46 0.001 17.4 0.8 17 118-134 2-18 (26)
95 KOG3763 mRNA export factor TAP 21.2 37 0.0008 32.1 0.4 41 159-201 211-254 (585)
96 TIGR03221 muco_delta muconolac 20.9 9.3 0.0002 26.7 -2.7 34 8-41 11-46 (90)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.5e-18 Score=142.96 Aligned_cols=257 Identities=17% Similarity=0.070 Sum_probs=134.9
Q ss_pred CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCCCc---eEEEecCCccCccCccchHHHHHHHH-hhhcccCC-Cc
Q 038991 4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQ---TLLFDATLCIRQGDFTDATMERFEMS-KLYLHSYR-VS 78 (287)
Q Consensus 4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~~~---~l~f~~~~~~~~~~f~~~~~~~~v~~-~l~~~~~~-~~ 78 (287)
+..||||++..|||.|+.||+.+++.|||||+++-+.-. .++..+.... .....+.+.+ ++..|-.. ..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~------p~~l~~l~~rgV~v~Rlar~~~ 171 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH------PDVLGRLLSRGVIVFRLARSFM 171 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC------hhHHHHHHhCCeEEEEcchhhh
Confidence 468999999999999999999999999999998744322 3333333221 1111222222 11111110 01
Q ss_pred CCcchhhHHHHHHcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcc
Q 038991 79 GSGRFKGWVSLAVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQ 156 (287)
Q Consensus 79 ~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~ 156 (287)
+..++..- ....+..++.+||+........+...+..|.+|+.|.|.|....+ +....+.-.+|+.|+| .+.-....
T Consensus 172 ~~prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 172 DQPRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred cCchhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence 11111110 112334677778776654444444455566667777776665543 1112234566677777 55444445
Q ss_pred hHHHHHccCCccceEEeeeeeccCCCee--eEEEECCCcceEEEEEeeccccc------------------------ccc
Q 038991 157 LTEKLFSSCPSIEELCLKVYLKYDGPAT--NFIISSSTLKRFYWTVLVDDYNF------------------------AFN 210 (287)
Q Consensus 157 ~l~~l~~~cp~Le~L~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~~~~~~~------------------------~~~ 210 (287)
++.-++++|..|.+|+|+.| ....+.. .+...+++|+.|++++| ...+ .+.
T Consensus 251 ~~~ll~~scs~L~~LNlsWc-~l~~~~Vtv~V~hise~l~~LNlsG~--rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWC-FLFTEKVTVAVAHISETLTQLNLSGY--RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred HHHHHHHhhhhHhhcCchHh-hccchhhhHHHhhhchhhhhhhhhhh--HhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 56666677777777777766 2211011 11123455555555555 1110 001
Q ss_pred CCcccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceE
Q 038991 211 NFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKS 276 (287)
Q Consensus 211 ~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~ 276 (287)
.........-|.|++|.++-|..- .+.+..+|+|..+++.++..+ ..+.-+...+++++.
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd------t~mel~~e~~~~lki 391 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD------TTMELLKEMLSHLKI 391 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc------hHHHHHHHhCccccc
Confidence 001111223355555555555432 456677888888887776543 235566666776554
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.00 E-value=3.8e-12 Score=110.65 Aligned_cols=142 Identities=19% Similarity=0.179 Sum_probs=86.5
Q ss_pred CCchHHHHHHhcCCChhhhhhhccchhhhHhh------hCCCceEEEecCCccCccCccchHHHHHHHHhhhcccCCCcC
Q 038991 6 SLLDSVLCNILSFLTTKIDVATCILSSRWRHV------CTSLQTLLFDATLCIRQGDFTDATMERFEMSKLYLHSYRVSG 79 (287)
Q Consensus 6 ~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l------w~~~~~l~f~~~~~~~~~~f~~~~~~~~v~~~l~~~~~~~~~ 79 (287)
.||.|++..|||+|+++.+.+++++|+.|..+ |..+...+|..+.. .++ +..++.+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~---g~V----V~~~~~R----------- 135 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD---GGV----VENMISR----------- 135 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC---Ccc----eehHhhh-----------
Confidence 59999999999999999999999999999985 33332222221111 111 1111111
Q ss_pred CcchhhHHHHHHcCCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeecccc---CCCcccCCCccEEEE-EEEeCC
Q 038991 80 SGRFKGWVSLAVMRDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIAV---PVSGMCFPNLKFLRV-SLQYPE 154 (287)
Q Consensus 80 ~~~~~~wl~~a~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L-~~~~~~ 154 (287)
+. ..+++|.+..+... ...+-.....|+++++|.+.+|...+- -..+..|+.|+.|.| .|...+
T Consensus 136 ----------cg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 136 ----------CG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred ----------hc-cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 11 35666666555432 334444555667777777777764331 102236777777777 655555
Q ss_pred cchHHHHHccCCccceEEeeee
Q 038991 155 NQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 155 ~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+..+..+..+||+|+.|+++.|
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccC
Confidence 5566667777777777777777
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=7.6e-10 Score=68.43 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhC
Q 038991 4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCT 39 (287)
Q Consensus 4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~ 39 (287)
|+.||+||+.+||++|+.+|.++++.|||+|+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999999999999999998753
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=1.8e-08 Score=62.50 Aligned_cols=38 Identities=37% Similarity=0.516 Sum_probs=31.8
Q ss_pred CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCCC
Q 038991 4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSL 41 (287)
Q Consensus 4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~~ 41 (287)
+++||+|++.+||++|+.+|.++++.|||+|+.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 56899999999999999999999999999999986543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.53 E-value=7.5e-08 Score=96.88 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=48.5
Q ss_pred CCceEEEEEEecCccccCCCCCc-CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIY-SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
+.++.|+|+.+.. ...+|..++ .+.+|++|+|+++.+.... ....+++|++|+| +..+.+ .+..-+..+++|+.
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSG--EIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCcccccc-CccccCCCCEEECcCCcccc--cCChHHhcCCCCCE
Confidence 4566666654332 123454444 5566666666666543211 1234566666666 554432 12222445566666
Q ss_pred EEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
|++++| ...+.........++|+.|.+.+|
T Consensus 169 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 169 LDLGGN-VLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred EECccC-cccccCChhhhhCcCCCeeeccCC
Confidence 666655 332201111113345555555554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.45 E-value=1.5e-07 Score=94.65 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++++|++..+.. ...+|..+...++|++|+|++|.+.. .|.....+++|+.|+| +..+.+ .+..-+..+++|++
T Consensus 164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~ 240 (968)
T PLN00113 164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNH 240 (968)
T ss_pred CCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCE
Confidence 5777777765432 22445555566667777776665432 3323345566666666 554432 11222344555555
Q ss_pred EEeeee
Q 038991 171 LCLKVY 176 (287)
Q Consensus 171 L~l~~c 176 (287)
|++.+|
T Consensus 241 L~L~~n 246 (968)
T PLN00113 241 LDLVYN 246 (968)
T ss_pred EECcCc
Confidence 555555
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.40 E-value=1.9e-07 Score=55.66 Aligned_cols=34 Identities=38% Similarity=0.430 Sum_probs=31.7
Q ss_pred CchHHHHHHhcCCChhhhhhhccchhhhHhhhCC
Q 038991 7 LLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS 40 (287)
Q Consensus 7 LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~ 40 (287)
||+|++.+||++++.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999997643
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.9e-08 Score=81.29 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=104.7
Q ss_pred HHHcCCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccc--cCC-CcccCCCccEEEE-EEE-eCCcchHHHHH
Q 038991 89 LAVMRDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIA--VPV-SGMCFPNLKFLRV-SLQ-YPENQLTEKLF 162 (287)
Q Consensus 89 ~a~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~-~~~~~~~L~~L~L-~~~-~~~~~~l~~l~ 162 (287)
.|..+++++++|+++..- ...+...+.+|+.|..|+|+.|...+ +.+ ...-=+.|++|+| +++ ......+.-+.
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 455679999999987642 44444556789999999999997654 111 1224589999999 763 33345688888
Q ss_pred ccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEE-EcCccEEEEEEecccc---ceee
Q 038991 163 SSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLI-MAPLLQLLHVVDDLMV---SYEV 238 (287)
Q Consensus 163 ~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i-~ap~L~~L~l~~~~~~---~~~~ 238 (287)
..||+|.+|+|++|....+..-....+.+.|++|.++.|++- .. ..-+.+ .+|+|.+|++.|+..+ ....
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-----~p-~~~~~l~s~psl~yLdv~g~vsdt~mel~~ 383 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-----IP-ETLLELNSKPSLVYLDVFGCVSDTTMELLK 383 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-----Ch-HHeeeeccCcceEEEEeccccCchHHHHHH
Confidence 999999999999994333212222336799999999999421 11 223344 6899999999999776 2233
Q ss_pred ecCCCcee
Q 038991 239 HDLQFLQT 246 (287)
Q Consensus 239 ~~~p~L~~ 246 (287)
+.+|+|+-
T Consensus 384 e~~~~lki 391 (419)
T KOG2120|consen 384 EMLSHLKI 391 (419)
T ss_pred HhCccccc
Confidence 45666543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.04 E-value=8.8e-07 Score=80.94 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=34.1
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcc-cCCCccEEEE-EEEe
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGM-CFPNLKFLRV-SLQY 152 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L-~~~~ 152 (287)
.++++|+|..+..+..+.. .+.+..+|..|+|+.+....+|.... .+|.|+.|.| .-.+
T Consensus 173 ~ni~~L~La~N~It~l~~~-~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETG-HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred CCceEEeeccccccccccc-cccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 4677777776654333322 22334577777777776666553333 4777777777 4433
No 10
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.8e-07 Score=80.45 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=98.2
Q ss_pred CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccccCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
.++++|+|+.+-.. ...+-..+...++|+.|+|+.+.+..+.. ....+++||+|.| +|.+.. .++..++..||+|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-KDVQWILLTFPSL 224 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-HHHHHHHHhCCcH
Confidence 47777777655432 23333344456889999998887644321 2237899999999 999885 7899999999999
Q ss_pred ceEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccccee---------e
Q 038991 169 EELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYE---------V 238 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---------~ 238 (287)
|.|.|... ..-. .....- ...+|+.|+++++. -.++ + .....-..|.|.-|.++.+...++. .
T Consensus 225 ~~L~L~~N-~~~~-~~~~~~~i~~~L~~LdLs~N~-li~~--~--~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 225 EVLYLEAN-EIIL-IKATSTKILQTLQELDLSNNN-LIDF--D--QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred HHhhhhcc-cccc-eecchhhhhhHHhhccccCCc-cccc--c--cccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 99999988 4211 222222 24588888888872 1110 1 2234445677777777766544221 2
Q ss_pred ecCCCceeEEEEEEEc
Q 038991 239 HDLQFLQTVNLAILFL 254 (287)
Q Consensus 239 ~~~p~L~~~~l~~~~~ 254 (287)
..+|+|+.+.+..+..
T Consensus 298 ~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNI 313 (505)
T ss_pred cccccceeeecccCcc
Confidence 3567788777765543
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.90 E-value=5.8e-07 Score=78.67 Aligned_cols=59 Identities=20% Similarity=0.100 Sum_probs=28.3
Q ss_pred CcccEEEeceeecccc-----CCCcccC-CCccEEEE-EEEeCCc--chHHHHHccCCccceEEeeee
Q 038991 118 RSLEVLKLDYDFDIAV-----PVSGMCF-PNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~-----~~~~~~~-~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~~c 176 (287)
++|++|++++|.+.+. ......+ ++|+.|+| ++.+... ..+...+..++.|+.|++.+|
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 3466666666544310 0011233 56666666 5555431 113334455556666666666
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.86 E-value=1.1e-06 Score=76.90 Aligned_cols=185 Identities=14% Similarity=0.008 Sum_probs=114.1
Q ss_pred CCceEEEEEEecCcc---ccCCCCCcCC-CcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEEeCCcchHHHH-
Q 038991 93 RDVRELELNIENQQR---LELPESIYSC-RSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQYPENQLTEKL- 161 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l- 161 (287)
+.+++|+++.+.... ..+...+..+ ++|++|++++|.+.. +......+++|++|+| ++.+.+ ..+..+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD-AGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch-HHHHHHH
Confidence 459999997765431 1122233445 789999999997652 1112336689999999 887765 444443
Q ss_pred --HccCCccceEEeeeeeccCCC----eeeEEEECCCcceEEEEEeeccccc-cccCCcccEEEEcCccEEEEEEecccc
Q 038991 162 --FSSCPSIEELCLKVYLKYDGP----ATNFIISSSTLKRFYWTVLVDDYNF-AFNNFHHNCLIMAPLLQLLHVVDDLMV 234 (287)
Q Consensus 162 --~~~cp~Le~L~l~~c~~~~~~----~~~l~i~~~~Lk~L~l~~~~~~~~~-~~~~~~~~~~i~ap~L~~L~l~~~~~~ 234 (287)
+..+++|++|++.+| ...+. .....-..++|++|++++| ...- ........+....+.|++|++.++...
T Consensus 187 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 187 EGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN--NLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC--cCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 455679999999999 65430 1112224689999999998 3210 000000011112479999999988653
Q ss_pred -------ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcC-CcceEEEEecCe
Q 038991 235 -------SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGI-LNCKSLTLSSGV 283 (287)
Q Consensus 235 -------~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~ 283 (287)
.-.+..++.|+.++++.+... ......+.+.++.. ++++.|.+..+.
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFG--EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCc--HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 112345577888877655322 11233577788888 889999887764
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.84 E-value=6.8e-07 Score=71.14 Aligned_cols=101 Identities=22% Similarity=0.177 Sum_probs=32.8
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
+.++|+|..+... .+...-..+.+|+.|+|++|....+. ....+++|+.|++ +-.+..-. ..+...||+|++|.
T Consensus 20 ~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C--HHHHHH-TT--EEE
T ss_pred ccccccccccccc--cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEE
Confidence 5677787665532 22221124578999999998877766 5667888999988 66665411 23345689999999
Q ss_pred eeeeeccCCCeeeEEE--ECCCcceEEEEEe
Q 038991 173 LKVYLKYDGPATNFII--SSSTLKRFYWTVL 201 (287)
Q Consensus 173 l~~c~~~~~~~~~l~i--~~~~Lk~L~l~~~ 201 (287)
+.+. ...+ ...+.. ..|+|+.|.+.++
T Consensus 95 L~~N-~I~~-l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 95 LSNN-KISD-LNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TTS----S-CCCCGGGGG-TT--EEE-TT-
T ss_pred CcCC-cCCC-hHHhHHHHcCCCcceeeccCC
Confidence 9888 5544 322211 3466666666665
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.78 E-value=2.7e-05 Score=79.73 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=13.8
Q ss_pred CCcccEEEeceeeccccCCCcccCCCccEEEE
Q 038991 117 CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV 148 (287)
Q Consensus 117 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L 148 (287)
..+|++|++.++.+..++.....+++|+.|+|
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L 641 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL 641 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEEC
Confidence 34455555544443333322333444444444
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.3e-06 Score=77.05 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=95.4
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
.++++.|..+...+......+-.|++++.|+|+.+-+.. +...+.++|+|+.|+| .-.+....+ ...-...++|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhhhhh
Confidence 444555544433211111234456667777776654322 1112336677777777 544442111 11112456666
Q ss_pred eEEeeeeeccC--CCeeeEEEECCCcceEEEEEeeccccccccCCcccEEE---EcCccEEEEEEecccc----ceeeec
Q 038991 170 ELCLKVYLKYD--GPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLI---MAPLLQLLHVVDDLMV----SYEVHD 240 (287)
Q Consensus 170 ~L~l~~c~~~~--~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i---~ap~L~~L~l~~~~~~----~~~~~~ 240 (287)
.|.|+.| +.. + +..+...+|+|+.|.+..+ . + ...... -...|++|+++++... .+..+.
T Consensus 201 ~L~l~~C-Gls~k~-V~~~~~~fPsl~~L~L~~N--~------~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 201 QLVLNSC-GLSWKD-VQWILLTFPSLEVLYLEAN--E------I-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred eEEeccC-CCCHHH-HHHHHHhCCcHHHhhhhcc--c------c-cceecchhhhhhHHhhccccCCccccccccccccc
Confidence 7777777 432 2 3344456677777776666 1 1 011111 1236778888877643 466788
Q ss_pred CCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 241 LQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 241 ~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+|.|..+++..+-...-.+.+.....-...++.++.|.++.|.|
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 88888888876643211111223345566788888898888877
No 16
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.66 E-value=6.4e-05 Score=39.75 Aligned_cols=25 Identities=36% Similarity=0.739 Sum_probs=22.9
Q ss_pred CccEEEE-EEEeCCcchHHHHHccCC
Q 038991 142 NLKFLRV-SLQYPENQLTEKLFSSCP 166 (287)
Q Consensus 142 ~L~~L~L-~~~~~~~~~l~~l~~~cp 166 (287)
+||+|+| +|.+.++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 6999999 999988678999999998
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.52 E-value=5.9e-05 Score=69.35 Aligned_cols=128 Identities=14% Similarity=0.181 Sum_probs=79.6
Q ss_pred CCceEEEEEEecCccccCCCCCcC-CCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPESIYS-CRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..++.|||+.+. ...+|...|. ..++++|+|+++.+.++.. .+.++.+|.+|.| .-++.. --...++..|.||
T Consensus 149 ~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt--Lp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 149 PALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT--LPQRSFKRLPKLE 224 (873)
T ss_pred hhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc--cCHHHhhhcchhh
Confidence 356666776554 3444443344 3779999999998876432 4557889999999 777654 2246688899999
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL 232 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 232 (287)
.|+|... ...- ++.+.. ..++|+.|.+..+ +.. .++ .+....+-+++.|++..+.
T Consensus 225 ~LdLnrN-~iri-ve~ltFqgL~Sl~nlklqrN--~I~-kL~---DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 225 SLDLNRN-RIRI-VEGLTFQGLPSLQNLKLQRN--DIS-KLD---DGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred hhhcccc-ceee-ehhhhhcCchhhhhhhhhhc--Ccc-ccc---Ccceeeecccceeecccch
Confidence 9999988 5432 222333 4578888887766 221 111 1344445555555555443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.47 E-value=0.00014 Score=74.60 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=39.6
Q ss_pred CCCcCCCcccEEEeceeecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEE
Q 038991 112 ESIYSCRSLEVLKLDYDFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIIS 189 (287)
Q Consensus 112 ~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~ 189 (287)
..+..+++|+.|+|+++... .+| ....+++|+.|+| +|.... .+..-+..+++|+.|++.+| ..-..++ ..+.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c-~~L~~Lp-~~i~ 702 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRC-ENLEILP-TGIN 702 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCC-CCcCccC-CcCC
Confidence 33444555666666554322 233 3445566666666 543221 12222445566666666666 2111011 1123
Q ss_pred CCCcceEEEEEe
Q 038991 190 SSTLKRFYWTVL 201 (287)
Q Consensus 190 ~~~Lk~L~l~~~ 201 (287)
.++|+.|.+.+|
T Consensus 703 l~sL~~L~Lsgc 714 (1153)
T PLN03210 703 LKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCEEeCCCC
Confidence 456666666665
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.47 E-value=3.3e-06 Score=67.18 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=36.8
Q ss_pred cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee-EEEECCC
Q 038991 115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN-FIISSST 192 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~-l~i~~~~ 192 (287)
-.+.++++|+|.++....+..-...+.+|+.|+| +..+..-++ +..++.|++|.+++. .... +.. +.-..|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N-~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNN-RISS-ISEGLDKNLPN 89 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S--CHHHHHH-TT
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCC-CCCc-cccchHHhCCc
Confidence 3445688888888877665422225778888888 766654222 455788888888888 5543 321 1113577
Q ss_pred cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc------ceeeecCCCceeEEE
Q 038991 193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV------SYEVHDLQFLQTVNL 249 (287)
Q Consensus 193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~------~~~~~~~p~L~~~~l 249 (287)
|+.|.+.++ ... .++. ...+ -..|+|+.|++.|++.. .+.+..+|+|+.++-
T Consensus 90 L~~L~L~~N--~I~-~l~~-l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNN--KIS-DLNE-LEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS------SCCC-CGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCC--cCC-ChHH-hHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888877766 221 1111 1111 14577777777777643 234456677766653
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.45 E-value=1.9e-05 Score=68.08 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=79.5
Q ss_pred cCCCccEEEE-EEEeCC--cchHHHHHccCCccceEEeeeeeccCCC-e-----------eeEEE-ECCCcceEEEEEee
Q 038991 139 CFPNLKFLRV-SLQYPE--NQLTEKLFSSCPSIEELCLKVYLKYDGP-A-----------TNFII-SSSTLKRFYWTVLV 202 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~-----------~~l~i-~~~~Lk~L~l~~~~ 202 (287)
.+|.|++|+| +-.+.. ...+..++++|..|++|.|.+| +..-. - ..-++ ..|.||.+....+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN- 167 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence 5566666666 544443 2457788888888898888888 54210 0 01122 3457777777766
Q ss_pred ccccccccCCc---ccEEEEcCccEEEEEEecccc-------ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCC
Q 038991 203 DDYNFAFNNFH---HNCLIMAPLLQLLHVVDDLMV-------SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGIL 272 (287)
Q Consensus 203 ~~~~~~~~~~~---~~~~i~ap~L~~L~l~~~~~~-------~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~ 272 (287)
... ++.. ....-..|.|+.+++..+... ...+..+|+|+.+++.-++.. ...+..+.+.+..++
T Consensus 168 -rle---n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft--~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 168 -RLE---NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT--LEGSVALAKALSSWP 241 (382)
T ss_pred -ccc---cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh--hHHHHHHHHHhcccc
Confidence 211 1100 011123477777777766543 234567777777777655321 112345666777777
Q ss_pred cceEEEEecCeeE
Q 038991 273 NCKSLTLSSGVIL 285 (287)
Q Consensus 273 ~v~~L~l~~~~i~ 285 (287)
+++.|.++...++
T Consensus 242 ~L~El~l~dcll~ 254 (382)
T KOG1909|consen 242 HLRELNLGDCLLE 254 (382)
T ss_pred hheeecccccccc
Confidence 7777777766554
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=4.1e-05 Score=67.54 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=102.5
Q ss_pred CCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccC--CCe
Q 038991 110 LPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYD--GPA 183 (287)
Q Consensus 110 l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~ 183 (287)
+......|..|+.|..++|...+ +..-..++++|+.|-+ .+.-..+..+..+-.+||.||.|.+..| ... +..
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~-~~~~d~tL 364 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC-GLITDGTL 364 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc-ceehhhhH
Confidence 33444567888888888886643 1213347888999998 8765555778888888999999999888 321 113
Q ss_pred eeEEEECCCcceEEEEEeeccccccccCC--cccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEEcccc
Q 038991 184 TNFIISSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWS 257 (287)
Q Consensus 184 ~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~ 257 (287)
..+...+|.|+.|.++.|....+ +|. .....-.+-.|+.+.+.+++.. ...+..++.|+.+.+--+...
T Consensus 365 ~sls~~C~~lr~lslshce~itD---~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v-- 439 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITD---EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV-- 439 (483)
T ss_pred hhhccCCchhccCChhhhhhhhh---hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh--
Confidence 45666788899998888731111 110 0111224567788888887654 234567788888554333221
Q ss_pred ccChhhHHHHHhcCCcceEEEE
Q 038991 258 VLNPWEVVQLLNGILNCKSLTL 279 (287)
Q Consensus 258 ~~~~~~~~~~l~~l~~v~~L~l 279 (287)
....+..+-+.++|++...+
T Consensus 440 --tk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 440 --TKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred --hhhhhHHHHhhCccceehhh
Confidence 12346788888888877654
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.10 E-value=8.6e-05 Score=64.09 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=113.5
Q ss_pred CceEEEEEEecCc---cccCCCCCcCCCcccEEEeceeeccccC--------------CCcccCCCccEEEE-EEEeCCc
Q 038991 94 DVRELELNIENQQ---RLELPESIYSCRSLEVLKLDYDFDIAVP--------------VSGMCFPNLKFLRV-SLQYPEN 155 (287)
Q Consensus 94 ~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~~--------------~~~~~~~~L~~L~L-~~~~~~~ 155 (287)
.++.++|+-+-.+ ...+...+.+|.+|++|.|.+|...... .....=|.|+++.. .-++-+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 7888888755433 3344456667899999999998553211 01124478888888 7777654
Q ss_pred c--hHHHHHccCCccceEEeeeeeccCCCeeeEEE------ECCCcceEEEEEeeccccccccCC--cccEEEEcCccEE
Q 038991 156 Q--LTEKLFSSCPSIEELCLKVYLKYDGPATNFII------SSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQL 225 (287)
Q Consensus 156 ~--~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i------~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~ 225 (287)
. .+...+..+|.||++.+.+. +.. ...+.. .+|+||.|++.++ .++ ..|. .....-.-|+|+.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN-~I~--~eG~~al~eal~~~~~LevLdl~DN--tft--~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQN-GIR--PEGVTALAEALEHCPHLEVLDLRDN--TFT--LEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cHHHHHHHHHhccccceEEEecc-ccc--CchhHHHHHHHHhCCcceeeecccc--hhh--hHHHHHHHHHhcccchhee
Confidence 3 36778889999999999888 542 112211 5789999999888 332 1220 1111123467888
Q ss_pred EEEEecccc---ce-----eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 226 LHVVDDLMV---SY-----EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 226 L~l~~~~~~---~~-----~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+++.+|... .+ .-...|+|+.+.+..+..... .+..+..-+..-+.++.|.++.|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d--a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD--AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH--HHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888643 11 223478888887766643211 1223455555577888888887765
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.00013 Score=70.33 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=80.8
Q ss_pred CcccEEEeceeeccc-cC--CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 118 RSLEVLKLDYDFDIA-VP--VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~-~~--~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
.+|++|+++|..... -+ .....||+|++|.+ +..+.. +.+.++..++|+|..|+++++ ...+ .. -.-..++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~T-nI~n-l~-GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGT-NISN-LS-GISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCC-CccC-cH-HHhccccH
Confidence 456666766644332 11 02347899999999 888876 558888899999999999998 5443 21 01133566
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---------eeecCCCceeEEEEEEEccccccChhhH
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---------EVHDLQFLQTVNLAILFLQWSVLNPWEV 264 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---------~~~~~p~L~~~~l~~~~~~~~~~~~~~~ 264 (287)
+.|.+.+- .+. ......-.....+|+.|+++....... .-..+|.|+-++.+..... ...+
T Consensus 198 q~L~mrnL--e~e---~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~-----~~~l 267 (699)
T KOG3665|consen 198 QVLSMRNL--EFE---SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN-----EEIL 267 (699)
T ss_pred HHHhccCC--CCC---chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh-----HHHH
Confidence 66666655 221 000111223457777777775543211 1124677777776644322 2234
Q ss_pred HHHHhcCCcce
Q 038991 265 VQLLNGILNCK 275 (287)
Q Consensus 265 ~~~l~~l~~v~ 275 (287)
.++++.-++++
T Consensus 268 e~ll~sH~~L~ 278 (699)
T KOG3665|consen 268 EELLNSHPNLQ 278 (699)
T ss_pred HHHHHhCccHh
Confidence 55555444443
No 24
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=3.6e-05 Score=63.89 Aligned_cols=135 Identities=18% Similarity=0.083 Sum_probs=88.5
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
.++++.+..+......+.........|+.|++.++...++. ..-.+|+||+|.+ .-.+....++.-++..||+|.+|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 34445554333223344444555667777888777665543 4447899999999 653433356777888899999999
Q ss_pred eeeeeccCCCeeeEEE--ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc
Q 038991 173 LKVYLKYDGPATNFII--SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV 234 (287)
Q Consensus 173 l~~c~~~~~~~~~l~i--~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~ 234 (287)
+++. +... +.++.- ..++|+.|.+.+|... +.+.+..++...+|+|++|+..+....
T Consensus 98 ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~~~---~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 98 LSGN-KIKD-LSTLRPLKELENLKSLDLFNCSVT---NLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred ecCC-cccc-ccccchhhhhcchhhhhcccCCcc---ccccHHHHHHHHhhhhccccccccCCc
Confidence 9999 7654 444433 3467999999999321 234434556667899999988766543
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.80 E-value=0.0014 Score=63.96 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=32.1
Q ss_pred cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeC
Q 038991 92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYP 153 (287)
Q Consensus 92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~ 153 (287)
..+-..|+++... ...+|..+. ++|+.|.+.++.+..+|. ..++|+.|+| +..+.
T Consensus 200 ~~~~~~LdLs~~~--LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 200 NNGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred cCCCcEEEcCCCC--CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC
Confidence 3455566665443 345666543 357777777776655551 3567777777 55443
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.78 E-value=0.00034 Score=45.41 Aligned_cols=57 Identities=26% Similarity=0.309 Sum_probs=35.8
Q ss_pred CcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 118 RSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
++|++|.+++|.+..++. ....+++|+.|++ +..+.. .-...+.++|+|+.|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCC
Confidence 357777777776655543 3346777777777 655532 11234677888888887776
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.70 E-value=0.002 Score=62.80 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY 152 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~ 152 (287)
.+++.|.+..+. ...+|.. .++|++|+|+++.+..+|. ..++|+.|+| +..+
T Consensus 222 ~~L~~L~L~~N~--Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 222 AHITTLVIPDNN--LTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 274 (788)
T ss_pred cCCCEEEccCCc--CCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCch
Confidence 467788776544 3345532 4679999998887766652 2467777776 5443
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.49 E-value=0.00084 Score=65.42 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeC
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYP 153 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~ 153 (287)
..++.|+|+.+.. ..+|..+. .+|+.|+|+++.+..+|. . -+++|+.|+| +..+.
T Consensus 241 ~~L~~L~Ls~N~L--~~LP~~l~--s~L~~L~Ls~N~L~~LP~-~-l~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 241 DTIQEMELSINRI--TELPERLP--SALQSLDLFHNKISCLPE-N-LPEELRYLSVYDNSIR 296 (754)
T ss_pred ccccEEECcCCcc--CcCChhHh--CCCCEEECcCCccCcccc-c-cCCCCcEEECCCCccc
Confidence 4667777665542 34454332 357777777776655541 1 1356777777 65543
No 29
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.47 E-value=3.2e-05 Score=71.71 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=105.2
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
.++.|.++....+-..+|.++....+|..++|+.+.+..+|.+...+++|++|+| +-.+.+-.. -..---+||.|+
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM---TEGEWENLETLN 274 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec---cHHHHhhhhhhc
Confidence 4555565555555677899999999999999999988888877789999999999 776654111 112235789999
Q ss_pred eeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc--ceeeecCCCceeEEEE
Q 038991 173 LKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV--SYEVHDLQFLQTVNLA 250 (287)
Q Consensus 173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L~~~~l~ 250 (287)
++.. -... .+.-..+.++|+.|...++ .. .++|.+..+. ...+|+.|....+... .-.+..|+.|+++.++
T Consensus 275 lSrN-QLt~-LP~avcKL~kL~kLy~n~N--kL--~FeGiPSGIG-KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 275 LSRN-QLTV-LPDAVCKLTKLTKLYANNN--KL--TFEGIPSGIG-KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred cccc-hhcc-chHHHhhhHHHHHHHhccC--cc--cccCCccchh-hhhhhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence 9998 4333 4444456789999988877 33 2344211111 2344555554444322 2344566777777665
Q ss_pred EEEccccccChhhHHHHHhcCCcceEEEEecC
Q 038991 251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSG 282 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 282 (287)
-+... -+..-+.-++.++.|++..|
T Consensus 348 ~NrLi-------TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 348 HNRLI-------TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cccee-------echhhhhhcCCcceeeccCC
Confidence 33210 12233444555566655543
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.45 E-value=4.6e-05 Score=59.63 Aligned_cols=146 Identities=23% Similarity=0.296 Sum_probs=83.9
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEEEE-EeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRVSL-QYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
++..|.++-+. ....|+.+....+|+.|+++++....+|+..+++|.|+.|++++ ++. .+-+=+.++|.||.|+
T Consensus 34 ~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~levld 108 (264)
T KOG0617|consen 34 NITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhhhh
Confidence 34445554433 45567777778888889998888877776777888888888732 221 1222266788889888
Q ss_pred eeeeeccCC-CeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc--ceeeecCCCceeEEE
Q 038991 173 LKVYLKYDG-PATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV--SYEVHDLQFLQTVNL 249 (287)
Q Consensus 173 l~~c~~~~~-~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L~~~~l 249 (287)
+.+. .... +...--.--.+|+-|.+.++ .+ +- ..+-+=...+|+-|.+.++... .-.++.+..|+++.|
T Consensus 109 ltyn-nl~e~~lpgnff~m~tlralyl~dn--df----e~-lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 109 LTYN-NLNENSLPGNFFYMTTLRALYLGDN--DF----EI-LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred cccc-ccccccCCcchhHHHHHHHHHhcCC--Cc----cc-CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence 8887 4321 01111112346777777666 21 11 1111113455666666655432 224566667777766
Q ss_pred EEE
Q 038991 250 AIL 252 (287)
Q Consensus 250 ~~~ 252 (287)
...
T Consensus 181 qgn 183 (264)
T KOG0617|consen 181 QGN 183 (264)
T ss_pred ccc
Confidence 544
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00047 Score=58.62 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=101.4
Q ss_pred CcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 118 RSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
.-++-|.+.+|.+.+ +......+..++.|+| +-.+++=..+..++...|+|+.|+|+.. ....++.++..-..+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccce
Confidence 345567777775543 1112346889999999 8888776778899999999999999988 5433255565555689
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-----eeec-CCCceeEEEEEEEccccccChhhHHHH
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-----EVHD-LQFLQTVNLAILFLQWSVLNPWEVVQL 267 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-----~~~~-~p~L~~~~l~~~~~~~~~~~~~~~~~~ 267 (287)
+.|.+.+. +..| .. ..+..-+.|.++.|+++++..+.+ ..+. .|.++++...-|.. ..-.+..++
T Consensus 124 ~~lVLNgT--~L~w--~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~----~~w~~~~~l 194 (418)
T KOG2982|consen 124 RVLVLNGT--GLSW--TQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE----QLWLNKNKL 194 (418)
T ss_pred EEEEEcCC--CCCh--hh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH----HHHHHHHhH
Confidence 99999887 4322 11 223445679999999988743311 1111 12333333332211 111256788
Q ss_pred HhcCCcceEEEEecCeeE
Q 038991 268 LNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 268 l~~l~~v~~L~l~~~~i~ 285 (287)
-+.|+||..+.+..+.|+
T Consensus 195 ~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred HhhcccchheeeecCccc
Confidence 889999999999887654
No 32
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.37 E-value=0.00011 Score=68.35 Aligned_cols=162 Identities=22% Similarity=0.200 Sum_probs=104.0
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN 185 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~ 185 (287)
...+|..+|..+-|+.|+|+.+.+..+|...-.-.++-.|+| +-.+.. --..++.+..-|--|+|++. +.+. .+.
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~N-rLe~-LPP 167 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNN-RLEM-LPP 167 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccc-hhhh-cCH
Confidence 667899999999999999999988887755556778888888 655532 22345555566667788888 5443 221
Q ss_pred EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccCh
Q 038991 186 FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNP 261 (287)
Q Consensus 186 l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~ 261 (287)
-.-+...|+.|.++++ .. +-....-.-++.+|+.|++++..-. ..++.++.+|.+++++-+...
T Consensus 168 Q~RRL~~LqtL~Ls~N--PL----~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------ 235 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNN--PL----NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------ 235 (1255)
T ss_pred HHHHHhhhhhhhcCCC--hh----hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC------
Confidence 1224457778888877 21 1101111224567777888777533 345667777777777644321
Q ss_pred hhHHHHHhcCCcceEEEEecCeeE
Q 038991 262 WEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 262 ~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.+..-+-.+.+++.|.+|+|-|+
T Consensus 236 -~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCcee
Confidence 23456667788888888888775
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.25 E-value=0.00018 Score=69.35 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 116 SCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
..++|+.|+|+++.+..+|.. ...++.|+.|+| +-.+.. +..=+..|+.|+.|...+. .... .+ -...+|.|
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~---Lp~tva~~~~L~tL~ahsN-~l~~-fP-e~~~l~qL 454 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT---LPDTVANLGRLHTLRAHSN-QLLS-FP-ELAQLPQL 454 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh---hhHHHHhhhhhHHHhhcCC-ceee-ch-hhhhcCcc
Confidence 346677777776655555432 235666666666 555432 3344556777777776665 2221 12 12256788
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccccee---eecCCCceeEEEEEE
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYE---VHDLQFLQTVNLAIL 252 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~---~~~~p~L~~~~l~~~ 252 (287)
+.++++.+ .. ...........|+|++|+++|+.-..+. +..+.++...+++..
T Consensus 455 ~~lDlS~N--~L----~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 455 KVLDLSCN--NL----SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eEEecccc--hh----hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 88888877 32 2111222223379999999988632222 233334444444444
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.25 E-value=0.00036 Score=64.46 Aligned_cols=173 Identities=17% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCceEEEEEEecCc-cccCCCCCcCCCcccEEEecee-eccc-----cCCCcccCCCccEEEE-EEEeCCcchHHHHHcc
Q 038991 93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYD-FDIA-----VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSS 164 (287)
Q Consensus 93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~-~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~ 164 (287)
.+++++.+..+... ...+-+....|+.|+.|.+++| .... .......|++|+.|++ .+....+.++..+...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 56777766554322 2224455667788888888873 2211 1113346788888888 7774555788888888
Q ss_pred CCccceEEeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc-----------
Q 038991 165 CPSIEELCLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL----------- 232 (287)
Q Consensus 165 cp~Le~L~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~----------- 232 (287)
||+||.|.+.+|....+. +..+.-.+|.|+.|.+.+|....+ .+ ...+....|+|+.|.+.+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~~-l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---SG-LEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---HH-HHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 999999988888212220 344455678899998888831101 11 12223345555554443332
Q ss_pred ---c------cceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcc
Q 038991 233 ---M------VSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNC 274 (287)
Q Consensus 233 ---~------~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v 274 (287)
. .......++.++++.+..+. .... .....+.+++++
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~----~~~~~l~gc~~l 389 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL----GLELSLRGCPNL 389 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc----chHHHhcCCccc
Confidence 1 12334566777776666554 2111 124666666666
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00054 Score=58.28 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=107.7
Q ss_pred CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++++|..+... +.++-+.+...+.|+.|+|+.+.... +...+....+|++|.| +..++. ......++..|.+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w-~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW-TQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh-hhhhhhhhcchhhh
Confidence 48999999776543 45555566677889999999887643 2212246779999999 776654 55677788899999
Q ss_pred eEEeeeeeccC----CCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc----eeeecC
Q 038991 170 ELCLKVYLKYD----GPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS----YEVHDL 241 (287)
Q Consensus 170 ~L~l~~c~~~~----~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~ 241 (287)
+|+++.. .+. + .....--+|.++.|....| ..- .... ...+.---||++.+.+..++..+ -....+
T Consensus 150 elHmS~N-~~rq~n~D-d~c~e~~s~~v~tlh~~~c--~~~-~w~~-~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 150 ELHMSDN-SLRQLNLD-DNCIEDWSTEVLTLHQLPC--LEQ-LWLN-KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred hhhhccc-hhhhhccc-cccccccchhhhhhhcCCc--HHH-HHHH-HHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 9998877 321 1 1222225678888888888 211 0000 11222234788888777775441 123344
Q ss_pred CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
|++.-+++.-.. .+..+-..-|.+++.+..|.++.|.|
T Consensus 224 p~~~~LnL~~~~-----idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 224 PSLSCLNLGANN-----IDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred Ccchhhhhcccc-----cccHHHHHHHcCCchhheeeccCCcc
Confidence 544433333221 11233445566666666666665544
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.19 E-value=0.0034 Score=61.30 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=30.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY 152 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~ 152 (287)
..++.|++..+. ...+|..++ .+|+.|.+++|.+..+|. .-.++|+.|+| +..+
T Consensus 199 ~~L~~L~Ls~N~--LtsLP~~l~--~nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~N~L 253 (754)
T PRK15370 199 EQITTLILDNNE--LKSLPENLQ--GNIKTLYANSNQLTSIPA--TLPDTIQEMELSINRI 253 (754)
T ss_pred cCCcEEEecCCC--CCcCChhhc--cCCCEEECCCCccccCCh--hhhccccEEECcCCcc
Confidence 456777775543 335555443 467777777776655541 12245666666 5544
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.08 E-value=0.0021 Score=55.46 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=34.8
Q ss_pred CCCCCCCc----hHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991 1 QDRNSSLL----DSVLCNILSFLTTKIDVATCILSSRWRHV 37 (287)
Q Consensus 1 ~D~is~LP----d~vL~~Ils~L~~~~~~~~s~vSkrW~~l 37 (287)
+|.|+.|| |+|-..|||+|+..++.++-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 47899999 99999999999999999999999999973
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.95 E-value=0.001 Score=61.49 Aligned_cols=134 Identities=19% Similarity=0.085 Sum_probs=83.2
Q ss_pred cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee-eccCC-C--eeeEEEECCCcceEEEEEeeccccccccCCc
Q 038991 139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY-LKYDG-P--ATNFIISSSTLKRFYWTVLVDDYNFAFNNFH 213 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c-~~~~~-~--~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~ 213 (287)
.+|.|+.|.+ .+....+.++..+...||.|++|.+.+| ..... . ...+...+++|+.|.+..|.. .. -.+ .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-is--d~~-l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-VT--DIG-L 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-cC--chh-H
Confidence 4788888888 7766555567788888999999998873 11111 0 112333557888888888821 11 011 2
Q ss_pred ccEEEEcCccEEEEEEeccc-c----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEe
Q 038991 214 HNCLIMAPLLQLLHVVDDLM-V----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLS 280 (287)
Q Consensus 214 ~~~~i~ap~L~~L~l~~~~~-~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~ 280 (287)
..+.-.+|+|++|.+.++.. . ......+|+|+++++..+... ....+....+++++++.|.+.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~----~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL----TDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc----hHHHHHHHHHhCcchhhhhhh
Confidence 22333478899988766652 2 223346788999888866432 223456667778887776544
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.88 E-value=0.0015 Score=63.03 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=93.8
Q ss_pred cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccE
Q 038991 139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNC 216 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~ 216 (287)
+-.+|+.|++ +......+-...+...+|+|+.|.+.+- .+.+. ...+....|+|..|+|+++ ... . ..-
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T--nI~----n--l~G 190 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT--NIS----N--LSG 190 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC--Ccc----C--cHH
Confidence 3478999999 8665554667788889999999999997 44330 3456668899999999999 432 1 111
Q ss_pred EEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 217 LIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 217 ~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.-..++|+.|.+.+-.... ..+-++.+|+.++|+........-....+.+--..+++++.|+.|++++
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 2246888888887766542 2445678888888876543222111223455556789999999998765
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.26 E-value=0.012 Score=37.92 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=41.1
Q ss_pred CceEEEEEEecCccccCCCCCc-CCCcccEEEeceeeccccCC-CcccCCCccEEEE-EE
Q 038991 94 DVRELELNIENQQRLELPESIY-SCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SL 150 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~ 150 (287)
++++|++..+. ...+|...+ .+++|++|+++++.+..++. ....+++|+.|++ +.
T Consensus 2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57788876553 456665444 57999999999998876543 4568999999998 54
No 41
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.07 E-value=0.0086 Score=51.25 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHhcC-----CChhhhhhhccchhhhHhh
Q 038991 4 NSSLLDSVLCNILSF-----LTTKIDVATCILSSRWRHV 37 (287)
Q Consensus 4 is~LPd~vL~~Ils~-----L~~~~~~~~s~vSkrW~~l 37 (287)
|+.||||||..||.. |+.+++.++|+|||.|+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 688999999999965 4679999999999999964
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.87 E-value=0.0012 Score=63.85 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=87.7
Q ss_pred CcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcc
Q 038991 118 RSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLK 194 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk 194 (287)
+.|+.|.+.++.+.+ +| ...++++||.|+| .-++-. --..-+...+.||+|+|++. +... +..-...++.|+
T Consensus 359 ~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGN-kL~~-Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGN-KLTT-LPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHHHhcCcccccchh-hhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccc-hhhh-hhHHHHhhhhhH
Confidence 567777777776655 44 6678999999999 765532 11334677889999999999 7544 332233456666
Q ss_pred eEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceee-e--cCCCceeEEEEEEEccccccChhhHHHHHhcC
Q 038991 195 RFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEV-H--DLQFLQTVNLAILFLQWSVLNPWEVVQLLNGI 271 (287)
Q Consensus 195 ~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~-~--~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l 271 (287)
.|.-..+ -. . ..+-....|.|+.++++.+......+ . .-|.|+++++..+.+. ..+ .+-|+.+
T Consensus 434 tL~ahsN--~l----~--~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l--~~d----~~~l~~l 499 (1081)
T KOG0618|consen 434 TLRAHSN--QL----L--SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL--VFD----HKTLKVL 499 (1081)
T ss_pred HHhhcCC--ce----e--echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc--ccc----hhhhHHh
Confidence 6655554 11 1 22223356899999999887552211 1 2278999999877531 111 3445555
Q ss_pred CcceEEEEe
Q 038991 272 LNCKSLTLS 280 (287)
Q Consensus 272 ~~v~~L~l~ 280 (287)
.++..+++.
T Consensus 500 ~~l~~~~i~ 508 (1081)
T KOG0618|consen 500 KSLSQMDIT 508 (1081)
T ss_pred hhhhheecc
Confidence 555444443
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.81 E-value=0.055 Score=43.76 Aligned_cols=59 Identities=25% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 117 CRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 117 ~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
.+.|..|.|+++.+..+... ...+|+|+.|.| +-.+..=+++.. +.+||.|+.|.+.+.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 45566666666555443211 224566666666 544432122222 445666666666555
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.79 E-value=0.00055 Score=64.72 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=67.0
Q ss_pred ccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecC
Q 038991 163 SSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDL 241 (287)
Q Consensus 163 ~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~ 241 (287)
.-.|+||.|+|+.. .+.+ +. .--.++.||+|+++++ .. .- ...+...+-+|+.|.++++.... -.+.++
T Consensus 184 qll~ale~LnLshN-k~~~-v~-~Lr~l~~LkhLDlsyN--~L----~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTK-VD-NLRRLPKLKHLDLSYN--CL----RH-VPQLSMVGCKLQLLNLRNNALTTLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccchh-hhhh-hH-HHHhcccccccccccc--hh----cc-ccccchhhhhheeeeecccHHHhhhhHHhh
Confidence 34588999999998 7765 44 2236889999999887 21 11 12233333458888888887663 346678
Q ss_pred CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.+|+.+++..+-...+ .=..+|..++.++.|.+-+|.|
T Consensus 254 ksL~~LDlsyNll~~h-----seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEH-----SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcc-----hhhhHHHHHHHHHHHhhcCCcc
Confidence 8888888765432211 1235566666666666666543
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.75 E-value=0.0016 Score=55.54 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=75.9
Q ss_pred CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceE
Q 038991 118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRF 196 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L 196 (287)
.-|++|+|+++....+....--.|.++.|.+ .-.+..-+. +...|+|..|+|++. .... +.....+.-+.|.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N-~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGN-LLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccc-hhHh-hhhhHhhhcCEeee
Confidence 5577888887766554423334678888888 554443222 455688888888887 5444 44455566677778
Q ss_pred EEEEeeccccccccCCcccEEEEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEE
Q 038991 197 YWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILF 253 (287)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~ 253 (287)
.+..+. .. .+.| . =..-+|++|+++++... .-.+|++|+|+.+.+..+.
T Consensus 358 ~La~N~--iE-~LSG-L----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNK--IE-TLSG-L----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhh--Hh-hhhh-h----HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777762 11 1111 1 12346778888887765 3467888888888876543
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.64 E-value=0.01 Score=35.66 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=12.4
Q ss_pred cccEEEeceeeccccCCCcccCCCccEEEE
Q 038991 119 SLEVLKLDYDFDIAVPVSGMCFPNLKFLRV 148 (287)
Q Consensus 119 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L 148 (287)
+|++|.++++.+.+++.....|++|+.|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l 31 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNL 31 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEe
Confidence 455555555554444311333444444444
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.43 E-value=0.0098 Score=35.74 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCC
Q 038991 141 PNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDG 181 (287)
Q Consensus 141 ~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~ 181 (287)
++|+.|++ +..+.+ +...+..||+|+.|++++| .+.+
T Consensus 1 ~~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD---LPPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCcc---cCchHhCCCCCCEEEecCC-CCCC
Confidence 57889999 877754 4445788999999999999 6544
No 48
>PLN03150 hypothetical protein; Provisional
Probab=94.41 E-value=0.028 Score=54.12 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=49.0
Q ss_pred cccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceE
Q 038991 119 SLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRF 196 (287)
Q Consensus 119 ~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L 196 (287)
.++.|+|+++.+.. +|.....+++|+.|+| +..+.+ .+...+..+++|+.|+|+++ ...+.+...--..++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEE
Confidence 36777777776543 4434456778888888 665542 23334667788888888877 5544111111245677777
Q ss_pred EEEEe
Q 038991 197 YWTVL 201 (287)
Q Consensus 197 ~l~~~ 201 (287)
+++++
T Consensus 496 ~Ls~N 500 (623)
T PLN03150 496 NLNGN 500 (623)
T ss_pred ECcCC
Confidence 77776
No 49
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.03 E-value=0.03 Score=49.88 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=33.4
Q ss_pred CCCCCchHHHHHHhcCCC-hhhhhhhccchhhhHhhhCC
Q 038991 3 RNSSLLDSVLCNILSFLT-TKIDVATCILSSRWRHVCTS 40 (287)
Q Consensus 3 ~is~LPd~vL~~Ils~L~-~~~~~~~s~vSkrW~~lw~~ 40 (287)
..++||+|+|..|..+|+ .-|++|.+.||+.||..-..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 368999999999999997 48999999999999986543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.89 E-value=0.1 Score=42.25 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=69.0
Q ss_pred CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCC-cchHHHHHccCCccceEEeeeeecc---CCCeeeEEEECCC
Q 038991 118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPE-NQLTEKLFSSCPSIEELCLKVYLKY---DGPATNFIISSST 192 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~l~i~~~~ 192 (287)
.....++|+.+.....+ ..-.++.|++|.| +-++.. +..+ ....|+|..|.+.+. .. .+ +..+. .+|+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~LtnN-si~~l~d-l~pLa-~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTNN-SIQELGD-LDPLA-SCPK 114 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccch---hhhccccceEEecCc-chhhhhh-cchhc-cCCc
Confidence 44667788877665544 4458899999999 766543 2333 344699999999997 33 22 22222 6789
Q ss_pred cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc
Q 038991 193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL 232 (287)
Q Consensus 193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 232 (287)
|+.|++.++. .. ...++...+.-..|+|+.|++.+--
T Consensus 115 L~~Ltll~Np--v~-~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNP--VE-HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCc--hh-cccCceeEEEEecCcceEeehhhhh
Confidence 9999999883 22 1123233344467999999997543
No 51
>PLN03150 hypothetical protein; Provisional
Probab=93.84 E-value=0.034 Score=53.58 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=45.3
Q ss_pred cCCCCCcCCCcccEEEeceeecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCC
Q 038991 109 ELPESIYSCRSLEVLKLDYDFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDG 181 (287)
Q Consensus 109 ~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~ 181 (287)
.+|..+..+++|+.|+|+++.+. .+|.....+++|+.|+| +..+.+ .+..-+..+++|+.|+|+++ .+.+
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~L~Ls~N-~l~g 504 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGN-SLSG 504 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCEEECcCC-cccc
Confidence 45555666677788888777664 34434567777777777 666543 23344667777888887777 5543
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.76 E-value=0.015 Score=52.67 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=36.1
Q ss_pred CcccEEEeceeeccccCCCcccC-CCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcce
Q 038991 118 RSLEVLKLDYDFDIAVPVSGMCF-PNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKR 195 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~ 195 (287)
+.++.|.+.+....+++.....+ ++|+.|++ +-.+.. +..-+..+|+|+.|.+.++ ...+ +.......+.|+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N-~l~~-l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFN-DLSD-LPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh---hhhhhhccccccccccCCc-hhhh-hhhhhhhhhhhhh
Confidence 34555555555544444222223 15555555 443322 1122445555566655555 4333 2222224455555
Q ss_pred EEEEEe
Q 038991 196 FYWTVL 201 (287)
Q Consensus 196 L~l~~~ 201 (287)
|.++++
T Consensus 191 L~ls~N 196 (394)
T COG4886 191 LDLSGN 196 (394)
T ss_pred eeccCC
Confidence 555555
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.0061 Score=49.09 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=57.9
Q ss_pred cCCCCCcCCCcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991 109 ELPESIYSCRSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN 185 (287)
Q Consensus 109 ~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~ 185 (287)
.+|---..--.++.++=+++.+.. +. ....+++++.|.+ +|...++..+..+-...|+||+|+|++|....+ ..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~--~G 168 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD--GG 168 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech--hH
Confidence 444332222346666666654321 22 3447888899999 888877788888888889999999999933221 11
Q ss_pred EE--EECCCcceEEEEEe
Q 038991 186 FI--ISSSTLKRFYWTVL 201 (287)
Q Consensus 186 l~--i~~~~Lk~L~l~~~ 201 (287)
+. ...++||.|.+.+-
T Consensus 169 L~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHHhhhhHHHHhcCc
Confidence 11 15678888888776
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.46 E-value=0.011 Score=53.47 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=107.7
Q ss_pred CceEEEEEEecCccccCCCCCcCCC-cccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 94 DVRELELNIENQQRLELPESIYSCR-SLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.+..+++.... ...++......+ +|+.|+++++.....+.....+|+|+.|.+ +..+.+ +.......++|+.|
T Consensus 117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh---hhhhhhhhhhhhhe
Confidence 56666654433 567777666664 899999999988776535678999999999 887654 33333378999999
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc--eeeecCCCceeEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS--YEVHDLQFLQTVNL 249 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l 249 (287)
.+++. .... ++...-....|+.|.+.+. .. .. .....-..+++..+.+.+..... ..++.+++++.+++
T Consensus 192 ~ls~N-~i~~-l~~~~~~~~~L~~l~~~~N--~~----~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 192 DLSGN-KISD-LPPEIELLSALEELDLSNN--SI----IE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262 (394)
T ss_pred eccCC-cccc-CchhhhhhhhhhhhhhcCC--cc----ee-cchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence 99999 6443 2222112334888888877 21 00 11112234555555544444332 45667788888887
Q ss_pred EEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 250 AILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.-.... .+.. +..+.+++.|+++.+.+
T Consensus 263 s~n~i~-------~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 263 SNNQIS-------SISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccc-------cccc-ccccCccCEEeccCccc
Confidence 655332 1222 78889999999988654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.41 E-value=0.069 Score=48.27 Aligned_cols=132 Identities=17% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
++++.|+++.+. ...+|. --.+|++|.+++|.-.. +| .. -.++|+.|.+ +|.... .+ =+.|+.
T Consensus 52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~-LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLP-GS-IPEGLEKLTVCHCPEIS-----GL---PESVRS 116 (426)
T ss_pred cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCC-ch-hhhhhhheEccCccccc-----cc---ccccce
Confidence 678899987663 344442 12359999999875433 33 21 1358999999 873221 12 246888
Q ss_pred EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccE-EEEcCccEEEEEEeccccceeeecCCCceeEEE
Q 038991 171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNC-LIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNL 249 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~-~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l 249 (287)
|.+... . ...+..-.++|+.|.+.+. .. .. .... ..-.++|++|.+.++......-+-.++|+.+++
T Consensus 117 L~L~~n-~----~~~L~~LPssLk~L~I~~~--n~----~~-~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~l 184 (426)
T PRK15386 117 LEIKGS-A----TDSIKNVPNGLTSLSINSY--NP----EN-QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITL 184 (426)
T ss_pred EEeCCC-C----CcccccCcchHhheecccc--cc----cc-ccccccccCCcccEEEecCCCcccCcccccccCcEEEe
Confidence 888644 2 2223333458998888554 10 10 0001 112368999999987643211112247888888
Q ss_pred EE
Q 038991 250 AI 251 (287)
Q Consensus 250 ~~ 251 (287)
+.
T Consensus 185 s~ 186 (426)
T PRK15386 185 HI 186 (426)
T ss_pred cc
Confidence 64
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.86 E-value=0.0054 Score=48.30 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.+++.|.+..+. ..++|..+.+.++|+.|+++.+.....|..+++||.|+.|+| .-.+.+ ..+-.-+-....|.-|
T Consensus 56 ~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e-~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE-NSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc-ccCCcchhHHHHHHHH
Confidence 466666765543 678999999999999999998888778878899999999999 776655 2222112223344455
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEE-EcCccEEEEEEeccc
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLI-MAPLLQLLHVVDDLM 233 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i-~ap~L~~L~l~~~~~ 233 (287)
.+.+. .+ +.+.-..-.|+.|+|-...+..- - ...-++ ....|++|++.|+-.
T Consensus 133 yl~dn-df----e~lp~dvg~lt~lqil~lrdndl---l--~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 133 YLGDN-DF----EILPPDVGKLTNLQILSLRDNDL---L--SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred HhcCC-Cc----ccCChhhhhhcceeEEeeccCch---h--hCcHHHHHHHHHHHHhccccee
Confidence 55555 32 22222334566666655511100 0 011111 345677777777643
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.65 E-value=0.027 Score=56.08 Aligned_cols=81 Identities=20% Similarity=0.103 Sum_probs=48.2
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
+.++.||++.+. ....+|..+...-+|++|+|++.....+|.....+..|..|++ ..... ..+..+....++|+.|
T Consensus 571 ~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l--~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 571 PLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL--ESIPGILLELQSLRVL 647 (889)
T ss_pred cceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc--ccccchhhhcccccEE
Confidence 466777776533 2567888888888888888887766655544445555555555 33211 1123334446666666
Q ss_pred Eeeee
Q 038991 172 CLKVY 176 (287)
Q Consensus 172 ~l~~c 176 (287)
.+..-
T Consensus 648 ~l~~s 652 (889)
T KOG4658|consen 648 RLPRS 652 (889)
T ss_pred Eeecc
Confidence 66554
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=91.54 E-value=0.15 Score=43.91 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCCCcCCCcccEEEeceeeccc---------cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 110 LPESIYSCRSLEVLKLDYDFDIA---------VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 110 l~~~~~~~~~L~~L~L~~~~~~~---------~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+...+.=|..|+.|.+++...+- +|-....|.+|+++.+ .|. ...+..+...=|.|..+.+++.
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecc
Confidence 33333345667888877653310 1212234566666666 553 2334445555566666666554
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=90.66 E-value=0.098 Score=49.26 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=35.0
Q ss_pred CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991 1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHV 37 (287)
Q Consensus 1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l 37 (287)
+|.|+.||-|+..+||++|+.++..+++.+|+.|+.+
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 4789999999999999999999999999999999975
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.26 E-value=0.071 Score=45.19 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=64.6
Q ss_pred HHHHHccCCccceEEeeeeeccCCC----eeeEEEECCCcceEEEEEeeccccccccCC----------cccEEEEcCcc
Q 038991 158 TEKLFSSCPSIEELCLKVYLKYDGP----ATNFIISSSTLKRFYWTVLVDDYNFAFNNF----------HHNCLIMAPLL 223 (287)
Q Consensus 158 l~~l~~~cp~Le~L~l~~c~~~~~~----~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~----------~~~~~i~ap~L 223 (287)
+...+..||.|+..+|+.. .+... ...+..++..|++|.+.+| +.+ .+-|. ..+-.-++|.|
T Consensus 84 Ll~aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~Nn--GlG-p~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNN--GLG-PIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecC--CCC-ccchhHHHHHHHHHHHHhhhccCCCc
Confidence 3445567888888888777 54320 1122335567888888877 532 11110 11123467889
Q ss_pred EEEEEEecccc-------ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 224 QLLHVVDDLMV-------SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 224 ~~L~l~~~~~~-------~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+.+....+-.. ...+..-..|+.+.+..+... ..+...-+..=++-+.+++.|++..|+.
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr-pegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR-PEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC-cchhHHHHHHHHHHhCcceeeeccccch
Confidence 98876544321 011222246777777544321 1111111222245567899999998875
No 61
>PF13013 F-box-like_2: F-box-like domain
Probab=90.14 E-value=0.18 Score=36.65 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHhcCCChhhhhhhccchh---hhHhh-hCCC
Q 038991 4 NSSLLDSVLCNILSFLTTKIDVATCILSS---RWRHV-CTSL 41 (287)
Q Consensus 4 is~LPd~vL~~Ils~L~~~~~~~~s~vSk---rW~~l-w~~~ 41 (287)
+.+||+||+..|+.+-...+...+...++ .|++. |..+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999988877776 44443 4444
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.52 E-value=0.83 Score=41.48 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=64.1
Q ss_pred HcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceee-ccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 91 VMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDF-DIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 91 ~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
...++++|.+..+.. ...+|..+ ..+|++|.+++|. ...+| ++|+.|.+ ..... .+..+ =++|
T Consensus 70 LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~---~L~~L---PssL 134 (426)
T PRK15386 70 LPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKGSATD---SIKNV---PNGL 134 (426)
T ss_pred CCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccccc------cccceEEeCCCCCc---ccccC---cchH
Confidence 345799999866433 23444332 3579999999984 32333 46888887 43221 12222 2468
Q ss_pred ceEEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEec
Q 038991 169 EELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDD 231 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~ 231 (287)
+.|.+.++ .... ...+. .-.++|+.|.+.+| ... ..+ ..--++|++|++..+
T Consensus 135 k~L~I~~~-n~~~-~~~lp~~LPsSLk~L~Is~c--~~i------~LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 135 TSLSINSY-NPEN-QARIDNLISPSLKTLSLTGC--SNI------ILP-EKLPESLQSITLHIE 187 (426)
T ss_pred hheecccc-cccc-ccccccccCCcccEEEecCC--Ccc------cCc-ccccccCcEEEeccc
Confidence 88888655 2211 11111 22358999999998 311 000 011258888888654
No 63
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.41 E-value=0.0021 Score=56.91 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=92.8
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN 185 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~ 185 (287)
-..+|+.+.....++.|+++.+....+|....+.++|++|+. .-.+.+ +..=+..|..||+|...+. .... ...
T Consensus 80 l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e---l~~~i~~~~~l~dl~~~~N-~i~s-lp~ 154 (565)
T KOG0472|consen 80 LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE---LPDSIGRLLDLEDLDATNN-QISS-LPE 154 (565)
T ss_pred hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee---cCchHHHHhhhhhhhcccc-cccc-Cch
Confidence 567788888888888888888877777766778888888888 655543 1112445677888877776 3322 222
Q ss_pred EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc--ceeeecCCCc-------------------
Q 038991 186 FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV--SYEVHDLQFL------------------- 244 (287)
Q Consensus 186 l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~--~~~~~~~p~L------------------- 244 (287)
-...+.+|..|.+.+. .. .. ...-.|.+.+|++++...+... ...+|.+.+|
T Consensus 155 ~~~~~~~l~~l~~~~n--~l----~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc 227 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGN--KL----KA-LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGC 227 (565)
T ss_pred HHHHHHHHHHhhcccc--ch----hh-CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence 2233445555555555 21 11 1222334555555555444322 2234444444
Q ss_pred ---eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 245 ---QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 245 ---~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.+++++..+.. .--.+.++.++++..|++.+|-|+
T Consensus 228 s~L~Elh~g~N~i~------~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 228 SLLKELHVGENQIE------MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred HHHHHHHhcccHHH------hhHHHHhcccccceeeeccccccc
Confidence 44444433211 113567778888888888877654
No 64
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.80 E-value=0.027 Score=50.15 Aligned_cols=101 Identities=23% Similarity=0.127 Sum_probs=50.5
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
.+++++..-+. -..+|+.+...++|+.|.|..+....+| .+.+|..|+.|++ .-.+. .--+...+..++|-.|+
T Consensus 184 ~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 184 RLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH--hhHHHHhcccccceeee
Confidence 45555543221 3345555556666666666666555455 5556666666666 32221 11123445556666666
Q ss_pred eeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 173 LKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
+.+. .... .+.-.+...+|.+|+++++
T Consensus 259 LRdN-klke-~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 259 LRDN-KLKE-VPDEICLLRSLERLDLSNN 285 (565)
T ss_pred cccc-cccc-CchHHHHhhhhhhhcccCC
Confidence 6666 4333 2222223345666666665
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.39 E-value=0.51 Score=21.92 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=7.7
Q ss_pred cccEEEeceeeccc
Q 038991 119 SLEVLKLDYDFDIA 132 (287)
Q Consensus 119 ~L~~L~L~~~~~~~ 132 (287)
+|+.|+|++|.+..
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 57778888776543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.39 E-value=0.37 Score=40.45 Aligned_cols=83 Identities=22% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccc---cCCCcccCCCccEEEE-EEEeCCcch-HHHHHccCC
Q 038991 93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMCFPNLKFLRV-SLQYPENQL-TEKLFSSCP 166 (287)
Q Consensus 93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~-l~~l~~~cp 166 (287)
.+++.|+++-+... ...++..+..|++|++|+|+++.... ++ ....+++|+.|.+ +|....-.. -..++.-.|
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 36666666554322 45555555666777777777765543 22 2335666677777 665543222 234555556
Q ss_pred ccceEEeeee
Q 038991 167 SIEELCLKVY 176 (287)
Q Consensus 167 ~Le~L~l~~c 176 (287)
+|..|+-..+
T Consensus 144 ~L~~LD~~dv 153 (260)
T KOG2739|consen 144 SLKYLDGCDV 153 (260)
T ss_pred hhcccccccc
Confidence 6665555444
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.31 E-value=0.41 Score=24.90 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=6.4
Q ss_pred CCccceEEeeee
Q 038991 165 CPSIEELCLKVY 176 (287)
Q Consensus 165 cp~Le~L~l~~c 176 (287)
||+|+.|+|.+|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 455555555555
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.61 E-value=0.27 Score=39.80 Aligned_cols=62 Identities=16% Similarity=0.008 Sum_probs=45.6
Q ss_pred CcCCCcccEEEeceeeccccC---CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 114 IYSCRSLEVLKLDYDFDIAVP---VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+..+++++.|.+.+|..++.. -.....|+|+.|+| +|.-.++.++.. +...++|..|.+.+-
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDL 186 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCc
Confidence 445688899999999776521 11226799999999 887666677766 456899999988877
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=80.72 E-value=1.1 Score=22.27 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=12.2
Q ss_pred cccEEEeceeeccccC
Q 038991 119 SLEVLKLDYDFDIAVP 134 (287)
Q Consensus 119 ~L~~L~L~~~~~~~~~ 134 (287)
+|++|+|++|.+..+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4788899888776655
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.04 E-value=0.016 Score=49.08 Aligned_cols=78 Identities=19% Similarity=0.095 Sum_probs=49.5
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
+++.|+...+...+..+ ....+.|++|.|+-+++.++. ....|.+|+.|+| .-.+.+-+.+.. +.+.|+|..|.
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHh
Confidence 56667766554332221 123356888888888776655 5567888888888 655554223333 56788888888
Q ss_pred eeee
Q 038991 173 LKVY 176 (287)
Q Consensus 173 l~~c 176 (287)
|...
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 8664
No 71
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=79.25 E-value=1.3 Score=39.77 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=44.0
Q ss_pred EcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeEe
Q 038991 219 MAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILL 286 (287)
Q Consensus 219 ~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~~ 286 (287)
..|+|+.+.++++... .-.++++.++++++++-+... ..-..+++++++++.|++..|.|+.
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~------~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE------FVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH------HHHHHhhhccccceeeeecCCeeEE
Confidence 3577788888777655 235667777777777644321 1235789999999999999998864
No 72
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=77.54 E-value=3 Score=42.02 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=39.7
Q ss_pred CcccEEEeceeeccccCCCcccCCCccEEEE-EEEe-CCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcce
Q 038991 118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY-PENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKR 195 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~ 195 (287)
...+...+-++.....+ ....+|.|++|-+ .... .. ......+...|.|..|+|++|..... .+...-..-+||.
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhcc-CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhc
Confidence 45566666555444333 4456666766666 5431 11 12233455667777777776622111 1111112335555
Q ss_pred EEEEEe
Q 038991 196 FYWTVL 201 (287)
Q Consensus 196 L~l~~~ 201 (287)
|+++++
T Consensus 600 L~L~~t 605 (889)
T KOG4658|consen 600 LDLSDT 605 (889)
T ss_pred ccccCC
Confidence 555555
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.85 E-value=0.16 Score=43.34 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC--CcccCCCccEEEE-E--EEeCCcch-HHHHHccCC
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-S--LQYPENQL-TEKLFSSCP 166 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~--~~~~~~~~-l~~l~~~cp 166 (287)
++++.|.|+++.. ..|. .+..|.+|++|.|..+.+.++.. -..++|+|+.|.| . |....+.. -..++...|
T Consensus 41 p~lEVLsLSvNkI--ssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNKI--SSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeecccc--ccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 6899999988764 2332 35678999999998776655321 1238899999999 5 33322222 345778899
Q ss_pred ccceEEeeee
Q 038991 167 SIEELCLKVY 176 (287)
Q Consensus 167 ~Le~L~l~~c 176 (287)
+|+.|+=...
T Consensus 118 nLkKLDnv~V 127 (388)
T KOG2123|consen 118 NLKKLDNVPV 127 (388)
T ss_pred cchhccCccc
Confidence 9998875544
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=71.69 E-value=0.52 Score=43.03 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=17.0
Q ss_pred CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991 116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY 152 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~ 152 (287)
.+.+|+.|+|+++.+.++. ....++.|+.|++ +..+
T Consensus 116 ~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI 152 (414)
T ss_pred hhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence 3455555555555444433 3334444555555 4433
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.46 E-value=1.9 Score=21.74 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=8.5
Q ss_pred CCccceEEeeeeecc
Q 038991 165 CPSIEELCLKVYLKY 179 (287)
Q Consensus 165 cp~Le~L~l~~c~~~ 179 (287)
||+|++|+|++| ..
T Consensus 1 ~~~L~~L~l~~n-~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNN-QI 14 (24)
T ss_dssp -TT-SEEE-TSS-BE
T ss_pred CCCCCEEEccCC-cC
Confidence 678888888888 44
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=67.22 E-value=1.8 Score=39.44 Aligned_cols=106 Identities=17% Similarity=0.072 Sum_probs=66.7
Q ss_pred CCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEEC
Q 038991 113 SIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISS 190 (287)
Q Consensus 113 ~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~ 190 (287)
.+..+.+|+.|.+..+.+..+. . ...+++|+.|+| +-.+..-.. +..++.|+.|++.++ ...+ +..+.. .
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N-~i~~-~~~~~~-l 161 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGN-LISD-ISGLES-L 161 (414)
T ss_pred ccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc----hhhccchhhheeccC-cchh-ccCCcc-c
Confidence 3556688999999888776655 4 567999999999 766655333 344566999999998 5544 333332 6
Q ss_pred CCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc
Q 038991 191 STLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL 232 (287)
Q Consensus 191 ~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~ 232 (287)
+.|+.+.+.++ ... .+++ . . ....++++.+.+.+..
T Consensus 162 ~~L~~l~l~~n--~i~-~ie~-~-~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 162 KSLKLLDLSYN--RIV-DIEN-D-E-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhhcccCCcc--hhh-hhhh-h-h-hhhccchHHHhccCCc
Confidence 67777777777 321 0111 0 0 2334566666666555
No 77
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=62.08 E-value=2.4 Score=36.97 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=33.9
Q ss_pred CCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCCCc
Q 038991 4 NSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTSLQ 42 (287)
Q Consensus 4 is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~~~ 42 (287)
+..+|+++++.|++++..++++++|.+|+|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 467899999999999999999999999999987644444
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=58.21 E-value=2.3 Score=32.58 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=28.5
Q ss_pred cccEEEeceeeccccCCCcc-cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 119 SLEVLKLDYDFDIAVPVSGM-CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 119 ~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
.|+..+|+++.+.++|.... .||.++.|+| +-.+.+ +-.=++..|+|..|++...
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd---vPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD---VPEELAAMPALRSLNLRFN 110 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh---chHHHhhhHHhhhcccccC
Confidence 35555666665555443222 4556666666 554443 1111555666666666666
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=52.88 E-value=2.6 Score=32.36 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=44.3
Q ss_pred CcchhhHHHHHHcCCceEEEEEEecCccccCCCCCc-CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeC
Q 038991 80 SGRFKGWVSLAVMRDVRELELNIENQQRLELPESIY-SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYP 153 (287)
Q Consensus 80 ~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~ 153 (287)
..++..-+.... ++.+-..+++.......+|..+. .+++++.|+|+++.+.++|...+.+|+||.|++ .-.+.
T Consensus 39 lm~i~davy~l~-~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 39 LMYIADAVYMLS-KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhHHHHHHHHHh-CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 333444443332 34333333333333445554333 346888999999888888877778999999999 65553
No 80
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=51.49 E-value=3.7 Score=36.99 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=4.7
Q ss_pred cCCCccEEEE
Q 038991 139 CFPNLKFLRV 148 (287)
Q Consensus 139 ~~~~L~~L~L 148 (287)
.+|+|++|+|
T Consensus 272 ~L~~L~~lnl 281 (498)
T KOG4237|consen 272 KLPNLRKLNL 281 (498)
T ss_pred hcccceEecc
Confidence 3444444444
No 81
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=46.52 E-value=2.2 Score=41.51 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=60.8
Q ss_pred cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEE
Q 038991 139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCL 217 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~ 217 (287)
-+|.|+.|+| +-.+.+ .+.+..||.|.+|+|++. .... +..+....-.|..|.+.++ ... .+.| .
T Consensus 185 ll~ale~LnLshNk~~~----v~~Lr~l~~LkhLDlsyN-~L~~-vp~l~~~gc~L~~L~lrnN--~l~-tL~g-----i 250 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTK----VDNLRRLPKLKHLDLSYN-CLRH-VPQLSMVGCKLQLLNLRNN--ALT-TLRG-----I 250 (1096)
T ss_pred HHHHhhhhccchhhhhh----hHHHHhcccccccccccc-hhcc-ccccchhhhhheeeeeccc--HHH-hhhh-----H
Confidence 5688888888 777654 225777899999999887 5444 5555555555888888887 221 1111 1
Q ss_pred EEcCccEEEEEEecccc----ceeeecCCCceeEEEEEEE
Q 038991 218 IMAPLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILF 253 (287)
Q Consensus 218 i~ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~ 253 (287)
-...+|+.|+++.+... ...+..+.+|+.+++..+.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 13456666777655433 1123344566666666553
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=42.73 E-value=25 Score=30.38 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=19.9
Q ss_pred cCCCccEEEE-EEEeCC--cchHHHHHccCCccceEEeeee
Q 038991 139 CFPNLKFLRV-SLQYPE--NQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~--~~~l~~l~~~cp~Le~L~l~~c 176 (287)
.||.|++.+| +-.|.. .+.+..++++-..|++|.+++|
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 4444444444 333321 1335566666666666666666
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=39.32 E-value=16 Score=18.55 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.4
Q ss_pred CCcceEEEEecCeeE
Q 038991 271 ILNCKSLTLSSGVIL 285 (287)
Q Consensus 271 l~~v~~L~l~~~~i~ 285 (287)
+++++.|+++.|.|+
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 467888888888764
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=39.32 E-value=16 Score=18.55 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.4
Q ss_pred CCcceEEEEecCeeE
Q 038991 271 ILNCKSLTLSSGVIL 285 (287)
Q Consensus 271 l~~v~~L~l~~~~i~ 285 (287)
+++++.|+++.|.|+
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 467888888888764
No 85
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=36.85 E-value=1.4 Score=41.40 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=46.2
Q ss_pred ccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceEEE
Q 038991 120 LEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYW 198 (287)
Q Consensus 120 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l 198 (287)
|+.|-+++++...+|......+.|..|+. .+.+.. +..=+.+..+|++|.+... .+.+ ... ...+-.|.+|++
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrRn-~l~~-lp~-El~~LpLi~lDf 218 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRRN-HLED-LPE-ELCSLPLIRLDF 218 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhhh-hhhh-CCH-HHhCCceeeeec
Confidence 55555555555444433334444444444 332211 2222334455566666555 3322 111 111445666666
Q ss_pred EEeeccccccccCCcccEEEEcCccEEEEEEecccc
Q 038991 199 TVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV 234 (287)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~ 234 (287)
+++ ... . ...-.-.+..|+.|-+..++.+
T Consensus 219 ScN--kis----~-iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 219 SCN--KIS----Y-LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ccC--cee----e-cchhhhhhhhheeeeeccCCCC
Confidence 665 221 0 1111224667777777766644
No 86
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=36.75 E-value=18 Score=30.85 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=34.3
Q ss_pred CCCCchHHHHHHhcCCC-hhhhhhhccchhhh------HhhhCCCceEEEecCCc
Q 038991 4 NSSLLDSVLCNILSFLT-TKIDVATCILSSRW------RHVCTSLQTLLFDATLC 51 (287)
Q Consensus 4 is~LPd~vL~~Ils~L~-~~~~~~~s~vSkrW------~~lw~~~~~l~f~~~~~ 51 (287)
+.+||.|++..|+.+++ -+|++.++.+-..- +.+|+.+-..+|....+
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 68999999999999996 58888777654322 34566665566665443
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=32.94 E-value=31 Score=25.06 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=24.7
Q ss_pred cCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 115 YSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
..|.+|+.+.+... ...+. .....+++|+.+++ .- +.. --...+.+|+.|+.+.+.+.
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~~ 68 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPNN 68 (129)
T ss_dssp TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETST
T ss_pred hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccc--cceeeeeccccccccccccc
Confidence 34557777777632 22221 13346667777777 42 211 11234666777777777543
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=29.66 E-value=29 Score=18.03 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.7
Q ss_pred CCcceEEEEecCeeE
Q 038991 271 ILNCKSLTLSSGVIL 285 (287)
Q Consensus 271 l~~v~~L~l~~~~i~ 285 (287)
+.+++.|.++.|-|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467888998888774
No 89
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.55 E-value=12 Score=25.78 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=25.1
Q ss_pred CchHHHHHHhcCCChhhhhhhccchh--hhHhhhCCC
Q 038991 7 LLDSVLCNILSFLTTKIDVATCILSS--RWRHVCTSL 41 (287)
Q Consensus 7 LPd~vL~~Ils~L~~~~~~~~s~vSk--rW~~lw~~~ 41 (287)
+||++=.....++..++.+++..+-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 56666666666777888888766554 799999843
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.11 E-value=89 Score=18.23 Aligned_cols=7 Identities=29% Similarity=0.154 Sum_probs=3.3
Q ss_pred ccEEEEE
Q 038991 222 LLQLLHV 228 (287)
Q Consensus 222 ~L~~L~l 228 (287)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4444444
No 91
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=27.11 E-value=69 Score=19.47 Aligned_cols=34 Identities=18% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCccEEEE-EEEeCCc--chHHHHHccCCccceEEee
Q 038991 141 PNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLK 174 (287)
Q Consensus 141 ~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~ 174 (287)
.+||.+.+ +..-..+ +.+..++.+.+.||.+.+.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 45666666 4443322 2256788999999998875
No 92
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=23.78 E-value=11 Score=35.80 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
-.++.|-+..+. ...+|..+....+|..|+.+.|...++|.....+.+|+.|.+ .-.+.+ ....+. |-.|..|
T Consensus 143 lpLkvli~sNNk--l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~--~LpLi~l 216 (722)
T KOG0532|consen 143 LPLKVLIVSNNK--LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC--SLPLIRL 216 (722)
T ss_pred CcceeEEEecCc--cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh--CCceeee
Confidence 456666665544 566777777778999999999988887767778888888888 654432 123333 6678888
Q ss_pred EeeeeeccCCCeeeEEEE---CCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPATNFIIS---SSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~---~~~Lk~L~l~~~ 201 (287)
++++. + +..+.+. -..|+.|.+.++
T Consensus 217 DfScN-k----is~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 217 DFSCN-K----ISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ecccC-c----eeecchhhhhhhhheeeeeccC
Confidence 88877 4 4445553 356777777777
No 93
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.01 E-value=79 Score=22.81 Aligned_cols=30 Identities=10% Similarity=-0.125 Sum_probs=25.5
Q ss_pred CCCCCCchHHHHHHhcCCChhhhhhhccch
Q 038991 2 DRNSSLLDSVLCNILSFLTTKIDVATCILS 31 (287)
Q Consensus 2 D~is~LPd~vL~~Ils~L~~~~~~~~s~vS 31 (287)
+-+.++|.+++..||..+++.++.+.-.-|
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 457889999999999999999988776555
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=22.43 E-value=46 Score=17.39 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.5
Q ss_pred CcccEEEeceeeccccC
Q 038991 118 RSLEVLKLDYDFDIAVP 134 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~ 134 (287)
++|+.|+++++.+..+|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 35888888888776655
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.17 E-value=37 Score=32.08 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHccCCccceEEeeeeecc---CCCeeeEEEECCCcceEEEEEe
Q 038991 159 EKLFSSCPSIEELCLKVYLKY---DGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 159 ~~l~~~cp~Le~L~l~~c~~~---~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
..+-...|.++.++|++. .. +. ..++.-.+|.|+.|.++++
T Consensus 211 ~~~~~n~p~i~sl~lsnN-rL~~Ld~-~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNN-RLYHLDA-LSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHhhcCCcceeeeecccc-hhhchhh-hhHHHHhcchhheeecccc
Confidence 344456677777777666 32 22 3444556666666666665
No 96
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.92 E-value=9.3 Score=26.68 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=19.9
Q ss_pred chHHHHHHhcCCChhhhhhhccc--hhhhHhhhCCC
Q 038991 8 LDSVLCNILSFLTTKIDVATCIL--SSRWRHVCTSL 41 (287)
Q Consensus 8 Pd~vL~~Ils~L~~~~~~~~s~v--SkrW~~lw~~~ 41 (287)
|+++=......+-.+|++++..+ .-+|+|+|+-.
T Consensus 11 P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv~ 46 (90)
T TIGR03221 11 PVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRVA 46 (90)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEec
Confidence 33333333444455666666544 45899999863
Done!