Query 038991
Match_columns 287
No_of_seqs 137 out of 1487
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 6.5E-20 2.2E-24 172.2 0.7 39 2-40 7-50 (592)
2 2ast_B S-phase kinase-associat 99.7 2.7E-21 9.1E-26 169.3 -9.3 47 3-49 8-57 (336)
3 2p1m_B Transport inhibitor res 99.7 2.7E-20 9.4E-25 174.8 -3.4 262 1-282 3-324 (594)
4 4fcg_A Uncharacterized protein 99.1 3.1E-11 1E-15 105.3 3.9 149 90-251 78-238 (328)
5 4fcg_A Uncharacterized protein 99.0 4.6E-11 1.6E-15 104.2 1.2 173 93-282 104-287 (328)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 6.6E-10 2.3E-14 69.7 3.5 38 2-39 7-44 (53)
7 1h6u_A Internalin H; cell adhe 98.8 9E-10 3.1E-14 95.0 0.8 166 93-285 63-230 (308)
8 2z80_A TOLL-like receptor 2, v 98.7 5.4E-09 1.8E-13 91.7 4.0 176 93-285 52-235 (353)
9 4ezg_A Putative uncharacterize 98.7 1.5E-09 5.3E-14 87.3 -0.4 78 93-176 44-122 (197)
10 4fmz_A Internalin; leucine ric 98.7 2.3E-09 8E-14 93.6 0.1 106 162-284 217-323 (347)
11 1ozn_A Reticulon 4 receptor; N 98.7 1.2E-09 4E-14 93.0 -1.8 176 93-285 56-238 (285)
12 3ogk_B Coronatine-insensitive 98.7 3.5E-09 1.2E-13 99.0 1.0 60 220-284 462-525 (592)
13 1h6u_A Internalin H; cell adhe 98.7 2.5E-09 8.6E-14 92.2 -0.1 167 92-285 40-208 (308)
14 1ogq_A PGIP-2, polygalacturona 98.7 1.2E-09 4E-14 94.5 -2.5 183 93-285 76-281 (313)
15 2o6q_A Variable lymphocyte rec 98.6 1.7E-09 5.9E-14 91.4 -1.8 174 93-284 37-217 (270)
16 2ast_B S-phase kinase-associat 98.6 1.1E-10 3.8E-15 101.6 -10.3 60 116-176 140-205 (336)
17 1ozn_A Reticulon 4 receptor; N 98.6 6.6E-10 2.3E-14 94.6 -5.3 175 93-285 32-214 (285)
18 3rfs_A Internalin B, repeat mo 98.6 9E-10 3.1E-14 93.2 -4.4 172 93-284 41-217 (272)
19 2z81_A CD282 antigen, TOLL-lik 98.6 2.7E-08 9.1E-13 92.2 5.0 176 93-284 26-208 (549)
20 4fmz_A Internalin; leucine ric 98.6 3.9E-09 1.3E-13 92.1 -1.1 147 115-284 107-255 (347)
21 1h6t_A Internalin B; cell adhe 98.6 5.8E-09 2E-13 89.2 -0.0 166 93-285 46-213 (291)
22 1o6v_A Internalin A; bacterial 98.6 1.6E-08 5.5E-13 92.1 2.6 168 94-284 47-233 (466)
23 1ogq_A PGIP-2, polygalacturona 98.6 3.8E-09 1.3E-13 91.3 -1.5 106 93-201 50-159 (313)
24 4ezg_A Putative uncharacterize 98.6 3.8E-09 1.3E-13 85.0 -1.6 150 115-285 41-194 (197)
25 2z80_A TOLL-like receptor 2, v 98.6 4.6E-09 1.6E-13 92.1 -1.3 22 264-285 269-290 (353)
26 1xeu_A Internalin C; cellular 98.6 6.5E-09 2.2E-13 87.6 -0.6 37 115-152 60-97 (263)
27 2id5_A Lingo-1, leucine rich r 98.5 1.3E-08 4.5E-13 92.8 0.9 20 266-285 242-261 (477)
28 1o6v_A Internalin A; bacterial 98.5 2.2E-08 7.6E-13 91.1 2.3 165 93-285 90-256 (466)
29 2z66_A Variable lymphocyte rec 98.5 3.6E-09 1.2E-13 90.8 -2.8 58 221-284 150-211 (306)
30 3zyi_A Leucine-rich repeat-con 98.5 3.4E-09 1.2E-13 96.2 -3.3 59 220-284 241-302 (452)
31 2ell_A Acidic leucine-rich nuc 98.5 6.5E-09 2.2E-13 81.2 -1.3 104 93-201 24-130 (168)
32 2p1m_B Transport inhibitor res 98.5 4.1E-10 1.4E-14 105.4 -9.7 183 92-281 129-347 (594)
33 2id5_A Lingo-1, leucine rich r 98.5 1.9E-08 6.5E-13 91.7 1.4 85 113-201 123-210 (477)
34 2z66_A Variable lymphocyte rec 98.5 4.3E-10 1.5E-14 96.7 -9.2 177 92-285 77-261 (306)
35 3zyj_A Leucine-rich repeat-con 98.5 3.8E-09 1.3E-13 95.5 -3.6 174 93-284 112-291 (440)
36 1m9s_A Internalin B; cell inva 98.5 5.4E-09 1.8E-13 98.3 -2.8 165 93-284 43-209 (605)
37 3rgz_A Protein brassinosteroid 98.5 2.1E-08 7.3E-13 97.0 1.2 155 115-285 197-356 (768)
38 1xku_A Decorin; proteoglycan, 98.5 3.5E-09 1.2E-13 91.9 -4.6 58 220-284 215-275 (330)
39 3rgz_A Protein brassinosteroid 98.5 1.8E-08 6.2E-13 97.5 -0.2 148 93-251 100-256 (768)
40 2z7x_B TOLL-like receptor 1, v 98.5 5.2E-08 1.8E-12 89.7 2.9 175 93-285 302-481 (520)
41 3o6n_A APL1; leucine-rich repe 98.5 4E-08 1.4E-12 87.3 1.9 168 93-285 93-285 (390)
42 2z63_A TOLL-like receptor 4, v 98.4 8.9E-09 3E-13 95.8 -2.8 51 93-148 282-332 (570)
43 3t6q_A CD180 antigen; protein- 98.4 2.1E-09 7.3E-14 100.9 -7.1 80 94-176 279-360 (606)
44 2o6q_A Variable lymphocyte rec 98.4 1.2E-08 4.1E-13 86.1 -2.4 171 95-285 18-194 (270)
45 2ca6_A RAN GTPase-activating p 98.4 3.5E-09 1.2E-13 94.0 -6.2 163 115-284 91-286 (386)
46 2je0_A Acidic leucine-rich nuc 98.4 5.4E-09 1.9E-13 80.0 -4.3 104 93-201 17-123 (149)
47 3zyi_A Leucine-rich repeat-con 98.4 4.8E-09 1.7E-13 95.2 -5.5 150 116-285 121-279 (452)
48 3vq2_A TLR4, TOLL-like recepto 98.4 5.9E-09 2E-13 97.9 -5.2 51 93-148 285-335 (606)
49 3m19_A Variable lymphocyte rec 98.4 1.1E-08 3.6E-13 85.5 -3.1 147 94-252 36-189 (251)
50 2z63_A TOLL-like receptor 4, v 98.4 1.4E-09 4.6E-14 101.3 -9.7 155 116-284 371-530 (570)
51 1xku_A Decorin; proteoglycan, 98.4 4.6E-08 1.6E-12 84.8 0.5 172 93-285 76-253 (330)
52 1wwl_A Monocyte differentiatio 98.4 8.2E-09 2.8E-13 89.1 -4.4 82 92-176 94-183 (312)
53 1h6t_A Internalin B; cell adhe 98.4 6.3E-08 2.2E-12 82.7 1.2 142 93-253 68-211 (291)
54 3oja_A Leucine-rich immune mol 98.4 2.8E-08 9.4E-13 91.2 -1.1 94 94-201 35-130 (487)
55 3vq2_A TLR4, TOLL-like recepto 98.4 2.1E-09 7.2E-14 101.0 -9.0 59 117-176 375-434 (606)
56 3oja_A Leucine-rich immune mol 98.4 5.2E-08 1.8E-12 89.4 0.5 146 115-284 31-181 (487)
57 2xwt_C Thyrotropin receptor; s 98.4 5.1E-08 1.7E-12 80.6 0.4 102 93-201 31-140 (239)
58 1m9s_A Internalin B; cell inva 98.4 3.5E-08 1.2E-12 92.8 -0.9 141 93-252 65-207 (605)
59 3o53_A Protein LRIM1, AGAP0063 98.4 2.8E-08 9.5E-13 85.9 -1.5 95 93-201 34-130 (317)
60 3rfs_A Internalin B, repeat mo 98.4 1.4E-08 4.7E-13 85.9 -3.5 151 116-285 39-194 (272)
61 3zyj_A Leucine-rich repeat-con 98.3 5.6E-09 1.9E-13 94.4 -6.5 150 116-285 110-268 (440)
62 3oja_B Anopheles plasmodium-re 98.3 9E-08 3.1E-12 89.9 1.5 176 93-284 99-290 (597)
63 4eco_A Uncharacterized protein 98.3 3.4E-08 1.2E-12 93.5 -1.4 135 139-284 431-578 (636)
64 2z7x_B TOLL-like receptor 1, v 98.3 3.6E-07 1.2E-11 84.1 5.1 100 93-201 21-125 (520)
65 3e4g_A ATP synthase subunit S, 98.3 6.5E-08 2.2E-12 76.0 -0.2 93 107-201 50-149 (176)
66 3t6q_A CD180 antigen; protein- 98.3 9.6E-09 3.3E-13 96.4 -5.9 59 116-176 348-410 (606)
67 3m19_A Variable lymphocyte rec 98.3 3.2E-08 1.1E-12 82.6 -2.2 160 107-284 26-191 (251)
68 3o53_A Protein LRIM1, AGAP0063 98.3 5.5E-08 1.9E-12 84.0 -0.7 145 116-284 32-181 (317)
69 3o6n_A APL1; leucine-rich repe 98.3 1.3E-08 4.5E-13 90.4 -5.0 147 114-284 89-238 (390)
70 3v47_A TOLL-like receptor 5B a 98.3 1.5E-08 5.2E-13 91.7 -4.7 82 93-176 79-164 (455)
71 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 2.4E-07 8.3E-12 86.2 3.2 155 115-284 350-509 (562)
72 1p9a_G Platelet glycoprotein I 98.3 2.3E-08 7.8E-13 85.5 -3.5 58 115-176 52-110 (290)
73 3bz5_A Internalin-J, INLJ; leu 98.3 9.9E-08 3.4E-12 86.8 0.0 162 93-284 42-224 (457)
74 4eco_A Uncharacterized protein 98.3 3.7E-08 1.3E-12 93.3 -3.1 149 93-250 206-385 (636)
75 2z81_A CD282 antigen, TOLL-lik 98.3 5.3E-08 1.8E-12 90.2 -2.1 64 220-285 195-264 (549)
76 4ecn_A Leucine-rich repeat pro 98.3 9E-08 3.1E-12 93.5 -0.7 132 142-284 674-818 (876)
77 2ell_A Acidic leucine-rich nuc 98.3 4.3E-08 1.5E-12 76.5 -2.5 78 118-201 24-105 (168)
78 2ft3_A Biglycan; proteoglycan, 98.2 1.1E-08 3.7E-13 89.0 -6.7 58 220-284 216-276 (332)
79 4glp_A Monocyte differentiatio 98.2 1.1E-08 3.9E-13 88.1 -7.2 56 221-284 251-306 (310)
80 4glp_A Monocyte differentiatio 98.2 2.3E-07 8E-12 79.7 1.0 146 92-250 144-302 (310)
81 1wwl_A Monocyte differentiatio 98.2 2.8E-07 9.4E-12 79.4 1.5 174 93-284 121-308 (312)
82 2z62_A TOLL-like receptor 4, v 98.2 2.4E-08 8.3E-13 84.4 -5.5 102 94-201 29-134 (276)
83 3oja_B Anopheles plasmodium-re 98.2 2.5E-08 8.5E-13 93.7 -6.3 166 93-284 75-244 (597)
84 3v47_A TOLL-like receptor 5B a 98.2 4.8E-08 1.6E-12 88.3 -4.2 59 220-284 346-407 (455)
85 2e31_A FBS1, F-box only protei 98.2 8.7E-07 3E-11 75.1 3.5 35 3-37 50-85 (297)
86 1p9a_G Platelet glycoprotein I 98.2 1.2E-08 4.2E-13 87.1 -8.1 166 93-272 55-224 (290)
87 3bz5_A Internalin-J, INLJ; leu 98.1 2.3E-07 7.8E-12 84.4 -0.5 119 114-252 38-158 (457)
88 1ds9_A Outer arm dynein; leuci 98.1 3.4E-08 1.2E-12 79.3 -5.7 110 110-233 40-152 (198)
89 3g06_A SSPH2 (leucine-rich rep 98.1 1.9E-06 6.4E-11 81.3 5.0 90 94-201 41-131 (622)
90 2ca6_A RAN GTPase-activating p 98.1 1.4E-08 4.8E-13 90.1 -9.1 185 93-285 94-316 (386)
91 1ziw_A TOLL-like receptor 3; i 98.1 6.5E-08 2.2E-12 92.0 -5.1 31 220-250 535-568 (680)
92 4ecn_A Leucine-rich repeat pro 98.1 7.5E-08 2.5E-12 94.0 -5.0 101 93-201 548-654 (876)
93 3l2o_B F-box only protein 4; s 98.1 5.7E-07 1.9E-11 75.6 0.9 35 3-37 4-38 (312)
94 2ft3_A Biglycan; proteoglycan, 98.1 6.4E-08 2.2E-12 84.0 -5.3 172 93-285 78-254 (332)
95 2je0_A Acidic leucine-rich nuc 98.1 3.4E-08 1.2E-12 75.5 -6.6 80 117-201 16-98 (149)
96 3j0a_A TOLL-like receptor 5; m 98.1 3.8E-06 1.3E-10 82.0 6.1 104 93-201 266-372 (844)
97 3j0a_A TOLL-like receptor 5; m 98.0 2E-06 6.8E-11 84.0 3.9 179 93-284 290-492 (844)
98 3g06_A SSPH2 (leucine-rich rep 98.0 2.7E-06 9.3E-11 80.2 4.5 90 93-201 61-151 (622)
99 2z62_A TOLL-like receptor 4, v 98.0 1.7E-07 5.9E-12 79.1 -3.4 31 222-252 201-234 (276)
100 1z7x_W Ribonuclease inhibitor; 98.0 1.9E-08 6.5E-13 91.1 -10.3 62 221-284 199-268 (461)
101 3v7d_B Cell division control p 98.0 1E-06 3.5E-11 79.3 1.1 40 1-40 12-51 (464)
102 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 1.5E-05 5E-10 74.1 9.0 79 93-176 76-156 (562)
103 1xeu_A Internalin C; cellular 98.0 3.6E-07 1.2E-11 76.8 -2.0 57 114-176 81-138 (263)
104 3cvr_A Invasion plasmid antige 98.0 2E-06 6.7E-11 80.3 2.5 98 164-284 138-242 (571)
105 1z7x_W Ribonuclease inhibitor; 98.0 6.1E-09 2.1E-13 94.4 -14.2 162 114-284 223-410 (461)
106 2o6s_A Variable lymphocyte rec 98.0 6.7E-07 2.3E-11 72.2 -0.6 56 119-176 29-86 (208)
107 2o6s_A Variable lymphocyte rec 98.0 2.9E-07 9.9E-12 74.3 -3.1 141 93-249 28-172 (208)
108 2ra8_A Uncharacterized protein 98.0 3E-06 1E-10 74.5 3.2 17 268-284 303-319 (362)
109 2v9t_B SLIT homolog 2 protein 98.0 5.1E-07 1.7E-11 73.8 -2.0 133 108-252 24-162 (220)
110 3e6j_A Variable lymphocyte rec 98.0 5.3E-07 1.8E-11 74.1 -1.9 133 107-252 31-169 (229)
111 3goz_A Leucine-rich repeat-con 97.9 5E-08 1.7E-12 85.9 -8.8 184 93-285 22-238 (362)
112 2xwt_C Thyrotropin receptor; s 97.9 5.6E-07 1.9E-11 74.3 -2.0 165 93-282 55-236 (239)
113 3goz_A Leucine-rich repeat-con 97.9 5.5E-08 1.9E-12 85.6 -8.6 184 93-285 80-297 (362)
114 3cvr_A Invasion plasmid antige 97.9 5.8E-06 2E-10 77.1 4.4 161 92-285 58-220 (571)
115 3e6j_A Variable lymphocyte rec 97.9 5.1E-07 1.7E-11 74.2 -2.4 129 93-233 40-171 (229)
116 1a9n_A U2A', U2A'; complex (nu 97.9 2.5E-07 8.4E-12 72.8 -4.8 123 116-252 17-150 (176)
117 1ziw_A TOLL-like receptor 3; i 97.9 1.3E-06 4.4E-11 83.1 -1.0 173 93-283 25-206 (680)
118 2v70_A SLIT-2, SLIT homolog 2 97.9 6.2E-07 2.1E-11 73.3 -2.9 123 120-252 34-163 (220)
119 2ovr_B FBW7, F-BOX/WD repeat p 97.8 8.1E-06 2.8E-10 73.1 3.5 37 1-37 16-52 (445)
120 3e4g_A ATP synthase subunit S, 97.8 4.4E-06 1.5E-10 65.5 1.5 81 94-176 62-149 (176)
121 1ds9_A Outer arm dynein; leuci 97.8 2.4E-07 8.4E-12 74.3 -6.1 130 136-279 43-181 (198)
122 2v9t_B SLIT homolog 2 protein 97.8 1.1E-06 3.8E-11 71.7 -2.6 129 93-233 32-164 (220)
123 1p22_A F-BOX/WD-repeat protein 97.8 4.5E-06 1.5E-10 74.7 0.8 37 1-37 8-48 (435)
124 1jl5_A Outer protein YOPM; leu 97.8 4.4E-06 1.5E-10 75.8 0.6 94 93-201 131-225 (454)
125 2ra8_A Uncharacterized protein 97.8 7.3E-06 2.5E-10 72.1 2.0 152 93-252 139-317 (362)
126 4g8a_A TOLL-like receptor 4; l 97.8 1.4E-06 4.9E-11 81.6 -2.9 129 93-233 52-185 (635)
127 2v70_A SLIT-2, SLIT homolog 2 97.7 1.7E-06 5.7E-11 70.7 -2.4 131 93-233 32-165 (220)
128 2xot_A Amphoterin-induced prot 97.7 1.3E-06 4.5E-11 76.8 -3.4 32 117-148 63-95 (361)
129 1jl5_A Outer protein YOPM; leu 97.7 6E-06 2.1E-10 74.9 0.3 114 118-251 131-246 (454)
130 4g8a_A TOLL-like receptor 4; l 97.7 3E-06 1E-10 79.3 -1.8 134 107-252 43-183 (635)
131 4ay9_X Follicle-stimulating ho 97.7 1.8E-05 6.2E-10 69.1 3.0 179 93-285 30-215 (350)
132 1a9n_A U2A', U2A'; complex (nu 97.6 5.1E-06 1.7E-10 65.1 -1.4 130 93-233 19-152 (176)
133 2xot_A Amphoterin-induced prot 97.5 5.6E-06 1.9E-10 72.7 -2.1 160 107-284 30-201 (361)
134 1w8a_A SLIT protein; signaling 97.5 5.8E-06 2E-10 65.9 -2.3 89 107-201 20-112 (192)
135 3un9_A NLR family member X1; l 97.5 2E-07 6.8E-12 82.5 -12.0 156 90-251 69-248 (372)
136 2wfh_A SLIT homolog 2 protein 97.5 5.9E-06 2E-10 66.0 -2.7 89 107-201 22-112 (193)
137 2o6r_A Variable lymphocyte rec 97.4 9.6E-06 3.3E-10 63.5 -1.7 80 118-201 28-110 (177)
138 1dce_A Protein (RAB geranylger 97.4 7.2E-06 2.5E-10 76.5 -2.8 76 94-176 442-518 (567)
139 1dce_A Protein (RAB geranylger 97.3 1.2E-05 4.1E-10 75.0 -3.7 75 119-201 442-518 (567)
140 2o6r_A Variable lymphocyte rec 97.1 5.6E-05 1.9E-09 59.1 -1.1 103 93-201 28-134 (177)
141 1w8a_A SLIT protein; signaling 97.0 2.3E-05 7.7E-10 62.4 -3.8 123 120-253 10-137 (192)
142 2wfh_A SLIT homolog 2 protein 97.0 4.5E-05 1.5E-09 60.7 -2.2 103 93-201 31-136 (193)
143 4b8c_D Glucose-repressible alc 96.9 1.8E-05 6.2E-10 76.0 -5.9 102 93-201 224-326 (727)
144 4b8c_D Glucose-repressible alc 96.8 2.2E-05 7.5E-10 75.4 -6.4 112 110-233 216-328 (727)
145 3sb4_A Hypothetical leucine ri 96.8 0.00031 1.1E-08 60.6 1.0 31 117-148 100-131 (329)
146 1io0_A Tropomodulin; LRR prote 96.7 2.1E-05 7.1E-10 62.3 -6.3 95 81-176 22-133 (185)
147 3g39_A Variable lymphocyte rec 96.6 0.00027 9.4E-09 54.9 -0.7 89 107-201 21-112 (170)
148 2r9u_A Variable lymphocyte rec 96.5 0.00032 1.1E-08 54.8 -0.6 89 107-201 24-115 (174)
149 2r9u_A Variable lymphocyte rec 96.5 0.00099 3.4E-08 51.9 2.0 84 93-181 33-119 (174)
150 4fdw_A Leucine rich hypothetic 96.4 0.00079 2.7E-08 59.9 1.3 59 113-175 175-235 (401)
151 3g39_A Variable lymphocyte rec 96.4 0.0012 4.1E-08 51.2 2.2 84 93-181 30-116 (170)
152 2ifg_A High affinity nerve gro 96.2 0.00068 2.3E-08 58.7 -0.6 90 107-201 21-113 (347)
153 1io0_A Tropomodulin; LRR prote 95.9 0.00022 7.6E-09 56.3 -4.4 21 264-284 143-163 (185)
154 4ay9_X Follicle-stimulating ho 95.8 0.0068 2.3E-07 52.5 4.3 112 107-231 21-138 (350)
155 4fdw_A Leucine rich hypothetic 95.1 0.0014 4.7E-08 58.3 -2.9 52 94-148 181-233 (401)
156 3sb4_A Hypothetical leucine ri 94.6 0.037 1.3E-06 47.3 5.0 29 220-248 296-327 (329)
157 3un9_A NLR family member X1; l 94.6 0.0013 4.4E-08 57.9 -4.3 107 93-201 126-249 (372)
158 3rw6_A Nuclear RNA export fact 93.4 0.0098 3.4E-07 49.7 -1.0 80 93-173 170-258 (267)
159 2ifg_A High affinity nerve gro 92.7 0.031 1.1E-06 48.1 1.2 79 93-176 31-113 (347)
160 4gt6_A Cell surface protein; l 92.3 0.095 3.2E-06 46.0 3.8 58 220-286 333-392 (394)
161 3rw6_A Nuclear RNA export fact 86.0 0.13 4.4E-06 42.9 -0.3 38 139-176 168-206 (267)
162 4fs7_A Uncharacterized protein 83.3 0.36 1.2E-05 42.2 1.3 120 113-250 248-374 (394)
163 1pgv_A TMD-1, tropomodulin TMD 81.6 0.13 4.4E-06 40.7 -2.1 96 81-176 27-136 (197)
164 4gt6_A Cell surface protein; l 78.0 1.8 6.1E-05 37.7 3.9 80 114-201 284-367 (394)
165 1pgv_A TMD-1, tropomodulin TMD 73.3 0.092 3.1E-06 41.6 -5.1 61 116-176 39-108 (197)
166 4h09_A Hypothetical leucine ri 71.5 0.67 2.3E-05 40.1 -0.6 13 237-249 328-340 (379)
167 4h09_A Hypothetical leucine ri 70.8 1.5 5.3E-05 37.7 1.7 57 114-175 259-319 (379)
168 4fs7_A Uncharacterized protein 69.0 1.7 5.8E-05 37.8 1.5 81 113-201 292-376 (394)
169 2lz0_A Uncharacterized protein 52.0 3.9 0.00013 28.2 0.5 36 137-176 16-53 (100)
170 3rfe_A Platelet glycoprotein I 47.8 11 0.00038 27.0 2.5 36 118-153 31-68 (130)
171 2kwv_A RAD30 homolog B, DNA po 21.1 54 0.0019 18.8 1.8 16 5-20 10-25 (48)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=6.5e-20 Score=172.24 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=32.8
Q ss_pred CCCC----CCchHHHHHHhcCC-ChhhhhhhccchhhhHhhhCC
Q 038991 2 DRNS----SLLDSVLCNILSFL-TTKIDVATCILSSRWRHVCTS 40 (287)
Q Consensus 2 D~is----~LPd~vL~~Ils~L-~~~~~~~~s~vSkrW~~lw~~ 40 (287)
||++ +||||++.+||+|| +.+|++++++|||+|++++..
T Consensus 7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 4555 89999999999999 899999999999999998543
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=2.7e-21 Score=169.30 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCC---CceEEEecC
Q 038991 3 RNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS---LQTLLFDAT 49 (287)
Q Consensus 3 ~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~---~~~l~f~~~ 49 (287)
.+++||||++.+||++|+.+|+++++.|||+|+++... ...+++...
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~ 57 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK 57 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc
Confidence 48999999999999999999999999999999999632 335555443
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.7e-20 Score=174.77 Aligned_cols=262 Identities=15% Similarity=0.100 Sum_probs=148.3
Q ss_pred CCCCCCCchHHHHHHhcCCC-hhhhhhhccchhhhHhhhCC-CceEEEecCCccCccCccchHHHHHHHHh-----hhcc
Q 038991 1 QDRNSSLLDSVLCNILSFLT-TKIDVATCILSSRWRHVCTS-LQTLLFDATLCIRQGDFTDATMERFEMSK-----LYLH 73 (287)
Q Consensus 1 ~D~is~LPd~vL~~Ils~L~-~~~~~~~s~vSkrW~~lw~~-~~~l~f~~~~~~~~~~f~~~~~~~~v~~~-----l~~~ 73 (287)
+|++++|||||+.+||+||| .+|+++++.|||||+++... ...+.+...... . . ...+.++ +...
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~-~-----~~~~~~~~~L~~L~L~ 74 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--S-P-----ATVIRRFPKVRSVELK 74 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--C-H-----HHHHHHCTTCCEEEEE
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--C-H-----HHHHhhCCCceEEecc
Confidence 48999999999999999999 99999999999999988321 223433221110 0 0 1111111 1111
Q ss_pred cC---------CCcCCcchhhHHHHHHc--CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc---cCCCccc
Q 038991 74 SY---------RVSGSGRFKGWVSLAVM--RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA---VPVSGMC 139 (287)
Q Consensus 74 ~~---------~~~~~~~~~~wl~~a~~--~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~ 139 (287)
.. +..+...+..|+..... +++++|+++.+......+......|++|++|+|++|...+ ++.....
T Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 154 (594)
T 2p1m_B 75 GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154 (594)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH
T ss_pred CCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh
Confidence 10 12234566778876553 5888888876654322222222257789999998884322 2212237
Q ss_pred CCCccEEEE-EEEeCCc--chHHHHHccCCccceEEeeeeec--cCCC-eeeEEEECCCcceEEEEEeeccccccccCCc
Q 038991 140 FPNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLKVYLK--YDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFH 213 (287)
Q Consensus 140 ~~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~~c~~--~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~ 213 (287)
+++|+.|+| ++.+.+. ..+..+...||+|+.|++.+| . ..+. ...+...+++|+.|.+.+| .. ..+ .
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~---~~~-l 227 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL-ASEVSFSALERLVTRCPNLKSLKLNRA--VP---LEK-L 227 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC-CSCCCHHHHHHHHHHCTTCCEEECCTT--SC---HHH-H
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc-CCcCCHHHHHHHHHhCCCCcEEecCCC--Cc---HHH-H
Confidence 888999998 7776542 235555668889999988888 4 1100 1122224688899988877 21 011 1
Q ss_pred ccEEEEcCccEEEEEEeccc-------------------------------c--ceeeecCCCceeEEEEEEEccccccC
Q 038991 214 HNCLIMAPLLQLLHVVDDLM-------------------------------V--SYEVHDLQFLQTVNLAILFLQWSVLN 260 (287)
Q Consensus 214 ~~~~i~ap~L~~L~l~~~~~-------------------------------~--~~~~~~~p~L~~~~l~~~~~~~~~~~ 260 (287)
......+|+|++|.+.++.. . ......+++|+++++..+. ..
T Consensus 228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-----l~ 302 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-----VQ 302 (594)
T ss_dssp HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-----CC
T ss_pred HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-----CC
Confidence 22223457777776543311 0 0011245667777665332 22
Q ss_pred hhhHHHHHhcCCcceEEEEecC
Q 038991 261 PWEVVQLLNGILNCKSLTLSSG 282 (287)
Q Consensus 261 ~~~~~~~l~~l~~v~~L~l~~~ 282 (287)
...+..+++.+++++.|.++.+
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHHhcCCCcCEEeCcCc
Confidence 3457778888999999998865
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.11 E-value=3.1e-11 Score=105.27 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=95.9
Q ss_pred HHcCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 90 AVMRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 90 a~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
+...++++|++..+.. ..+|..++.+++|++|+|+++.+..+|.....+++|+.|+| +..+.. +..-+..+++|
T Consensus 78 ~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L 152 (328)
T 4fcg_A 78 ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA---LPASIASLNRL 152 (328)
T ss_dssp HTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC---CCGGGGGCTTC
T ss_pred ccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc---CcHHHhcCcCC
Confidence 3346888888876553 47788788888899999988877777755678889999998 766642 22336778889
Q ss_pred ceEEeeeeeccCCCee-eEE--------EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc--ee
Q 038991 169 EELCLKVYLKYDGPAT-NFI--------ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS--YE 237 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~-~l~--------i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~--~~ 237 (287)
+.|++.+| ...+... .+. -..++|+.|.+.++ ... . .....-..++|++|+++++.... ..
T Consensus 153 ~~L~L~~n-~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~----~-lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 153 RELSIRAC-PELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GIR----S-LPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp CEEEEEEE-TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CCC----C-CCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred CEEECCCC-CCccccChhHhhccchhhhccCCCCCEEECcCC--CcC----c-chHhhcCCCCCCEEEccCCCCCcCchh
Confidence 99999888 4433111 111 13678888888888 321 1 11111235677777777665441 23
Q ss_pred eecCCCceeEEEEE
Q 038991 238 VHDLQFLQTVNLAI 251 (287)
Q Consensus 238 ~~~~p~L~~~~l~~ 251 (287)
++.+++|+.+++..
T Consensus 225 l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 225 IHHLPKLEELDLRG 238 (328)
T ss_dssp GGGCTTCCEEECTT
T ss_pred hccCCCCCEEECcC
Confidence 55666666666653
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.02 E-value=4.6e-11 Score=104.15 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=91.4
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcc--hH-----HHHHcc
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQ--LT-----EKLFSS 164 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~--~l-----~~l~~~ 164 (287)
..+++|+++.+.. ..+|..+..+++|++|+|+++.+..+|.....+++|+.|+| ++.+.+.- .+ ...+.+
T Consensus 104 ~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 4677777765543 26666666777777777777766655545556777777777 65443210 00 011234
Q ss_pred CCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecC
Q 038991 165 CPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDL 241 (287)
Q Consensus 165 cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~ 241 (287)
+++|+.|++.+| .... +..-.-..++|+.|.++++ .. .+ .....-..|+|++|+++++... ...++.+
T Consensus 182 l~~L~~L~L~~n-~l~~-lp~~l~~l~~L~~L~L~~N--~l----~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRS-LPASIANLQNLKSLKIRNS--PL----SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp STTCCEEEEEEE-CCCC-CCGGGGGCTTCCEEEEESS--CC----CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred CCCCCEEECcCC-CcCc-chHhhcCCCCCCEEEccCC--CC----Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 777777777777 4432 2211113456777777766 22 11 1111113466666666664432 2234556
Q ss_pred CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecC
Q 038991 242 QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSG 282 (287)
Q Consensus 242 p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 282 (287)
++|+.+++..+..... +...+.++++++.|+++.+
T Consensus 253 ~~L~~L~L~~n~~~~~------~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 253 APLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCCCEEECTTCTTCCB------CCTTGGGCTTCCEEECTTC
T ss_pred CCCCEEECCCCCchhh------cchhhhcCCCCCEEeCCCC
Confidence 6666666543321100 1122455555666655554
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.92 E-value=6.6e-10 Score=69.67 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhC
Q 038991 2 DRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCT 39 (287)
Q Consensus 2 D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~ 39 (287)
+.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 35889999999999999999999999999999998643
No 7
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.78 E-value=9e-10 Score=95.04 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=94.8
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|+++.+.. ..++. +..+++|++|+|+++.+..++ ....+++|+.|+| +..+.+-. . +..+++|+.|
T Consensus 63 ~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L 134 (308)
T 1h6u_A 63 NNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT---P-LAGLSNLQVL 134 (308)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCG---G-GTTCTTCCEE
T ss_pred CCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCch---h-hcCCCCCCEE
Confidence 4666666654432 22333 455666777777766655544 4556677777777 66554421 1 5667777777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLA 250 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~ 250 (287)
++.+| ...+ ... --..++|+.|.+++| .. .+ ... .-..++|+.|+++++..... .+..+++|+.++++
T Consensus 135 ~l~~n-~l~~-~~~-l~~l~~L~~L~l~~n--~l----~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 135 YLDLN-QITN-ISP-LAGLTNLQYLSIGNA--QV----SD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp ECCSS-CCCC-CGG-GGGCTTCCEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred ECCCC-ccCc-Ccc-ccCCCCccEEEccCC--cC----CC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 77777 5544 332 113466777777766 22 11 111 12346777777777655422 25667777777765
Q ss_pred EEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.+... . +. -+..+++++.|.++.+.|.
T Consensus 204 ~N~l~-----~--~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 204 NNQIS-----D--VS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TSCCC-----B--CG-GGTTCTTCCEEEEEEEEEE
T ss_pred CCccC-----c--cc-cccCCCCCCEEEccCCeee
Confidence 43221 0 11 1677888888888877664
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.72 E-value=5.4e-09 Score=91.70 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=120.7
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
+.+++|+++.+.. ..++. .+..+++|++|+|+++.+...+ .....+++|+.|+| +..+.+ .....+..+++|+
T Consensus 52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCC
Confidence 5789998865543 34444 5677899999999999776643 24568899999999 877653 2345578899999
Q ss_pred eEEeeeeeccCCCeee--EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCc
Q 038991 170 ELCLKVYLKYDGPATN--FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFL 244 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~--l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L 244 (287)
.|++.++ ...+ +.. ..-..++|+.|.+.++ ..- .+......-..++|++|+++++.... ..++.+++|
T Consensus 128 ~L~L~~n-~l~~-l~~~~~~~~l~~L~~L~l~~n--~~~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 128 FLNLLGN-PYKT-LGETSLFSHLTKLQILRVGNM--DTF---TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp EEECTTC-CCSS-SCSSCSCTTCTTCCEEEEEES--SSC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred EEECCCC-CCcc-cCchhhhccCCCCcEEECCCC--ccc---cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 9999999 6654 333 1224689999999998 210 10000111235899999999887542 346678889
Q ss_pred eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 245 QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
+++++..+.. ......++..+++++.|+++.+.|.
T Consensus 201 ~~L~l~~n~l------~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 201 SHLILHMKQH------ILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEEEECSCS------TTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CeecCCCCcc------ccchhhhhhhcccccEEECCCCccc
Confidence 9888864422 1123456677899999999987653
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.69 E-value=1.5e-09 Score=87.26 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=41.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
..+++|+++.+.. ..+| .+..+++|++|++++|....++ ....+++|+.|++ +..+.+ .. ...+..+|+|+.|
T Consensus 44 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DK-IPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GG-SCCCTTCTTCCEE
T ss_pred CCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-cc-ChhhcCCCCCCEE
Confidence 4666666655432 2344 3555666777777666443333 4445666666666 544432 11 1124456666666
Q ss_pred Eeeee
Q 038991 172 CLKVY 176 (287)
Q Consensus 172 ~l~~c 176 (287)
++.+|
T Consensus 118 ~Ls~n 122 (197)
T 4ezg_A 118 DISHS 122 (197)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 66666
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.68 E-value=2.3e-09 Score=93.59 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=45.0
Q ss_pred HccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeec
Q 038991 162 FSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHD 240 (287)
Q Consensus 162 ~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~ 240 (287)
+..+++|+.|++.+| ...+ ... ....++|+.|.+.++ .. .+ . ...-..|+|++|+++++..... .+..
T Consensus 217 ~~~~~~L~~L~l~~n-~l~~-~~~-~~~l~~L~~L~l~~n--~l----~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 285 (347)
T 4fmz_A 217 VANMTRLNSLKIGNN-KITD-LSP-LANLSQLTWLEIGTN--QI----SD-I-NAVKDLTKLKMLNVGSNQISDISVLNN 285 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCC-CGG-GTTCTTCCEEECCSS--CC----CC-C-GGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred hhcCCcCCEEEccCC-ccCC-Ccc-hhcCCCCCEEECCCC--cc----CC-C-hhHhcCCCcCEEEccCCccCCChhhcC
Confidence 445555555555555 4333 222 112345555555554 21 11 0 0111235555555555543311 2344
Q ss_pred CCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 241 LQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 241 ~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+++|+.+++..+... ......+.++++++.|.++.+.|
T Consensus 286 l~~L~~L~L~~n~l~------~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLG------NEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CTTCSEEECCSSCCC------GGGHHHHHTCTTCSEEECCSSSC
T ss_pred CCCCCEEECcCCcCC------CcChhHhhccccCCEEEccCCcc
Confidence 555555555433110 11223445555555555555443
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.67 E-value=1.2e-09 Score=92.98 Aligned_cols=176 Identities=16% Similarity=0.085 Sum_probs=106.9
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceee-cccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDF-DIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
.++++|+++.+... ...|..+..+++|++|+|+++. ...+ +.....+++|+.|+| +..+.+ .....+..+++|+
T Consensus 56 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 56 RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQ 132 (285)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE--ECHhHhhCCcCCC
Confidence 57788887654321 1224455667888888888875 4443 324457788888888 766543 1123466788888
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCce
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQ 245 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~ 245 (287)
.|++.++ ...+ ...-.+ ..++|+.|.+.++ ... +......-..++|++|++.++.... ..+.++++|+
T Consensus 133 ~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n--~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 133 YLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGN--RIS----SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred EEECCCC-cccc-cCHhHhccCCCccEEECCCC--ccc----ccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 8888888 5443 221111 3467888888777 321 1000111135788888888776542 2456778888
Q ss_pred eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.+++..+... ......+..+++++.|+++.|.+.
T Consensus 205 ~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 205 TLYLFANNLS------ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCS------CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EeeCCCCcCC------cCCHHHcccCcccCEEeccCCCcc
Confidence 8877644221 112356778888888888887664
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.66 E-value=3.5e-09 Score=99.03 Aligned_cols=60 Identities=7% Similarity=-0.069 Sum_probs=32.5
Q ss_pred cCccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 220 APLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 220 ap~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.|+|++|++.++... ...+..+++|+.++|..+.. ....+..+.+.+++++.|.++.+.|
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-----SERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-----BHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-----cHHHHHHHHHhcCccCeeECcCCcC
Confidence 455666666555432 11234556666666654421 1223555666677777777776654
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.66 E-value=2.5e-09 Score=92.22 Aligned_cols=167 Identities=15% Similarity=0.093 Sum_probs=122.6
Q ss_pred cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
-.++++|++..+.. ..++ .+..+++|++|+|++|.+...+ ....+++|+.|+| +..+.+-. -+..+++|+.
T Consensus 40 l~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS----AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG----GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCCh-hHccCCCCCEEEccCCcCCCch----hhcCCCCCCE
Confidence 35899999865542 3344 4667899999999999887766 3778999999999 88776522 3778999999
Q ss_pred EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEE
Q 038991 171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNL 249 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l 249 (287)
|++++| ...+ ... .-..++|+.|.++++ .. .+ ... .-..++|+.|+++++..... .+..+++|+.+++
T Consensus 112 L~l~~n-~l~~-~~~-l~~l~~L~~L~l~~n--~l----~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTST-QITD-VTP-LAGLSNLQVLYLDLN--QI----TN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp EECTTS-CCCC-CGG-GTTCTTCCEEECCSS--CC----CC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred EECCCC-CCCC-chh-hcCCCCCCEEECCCC--cc----Cc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 999999 7665 443 124579999999988 32 22 111 22468999999999876522 3788999999998
Q ss_pred EEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 250 AILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
..+... .. . -+..+++++.|.++.|.|.
T Consensus 181 ~~n~l~----~~---~-~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 181 DDNKIS----DI---S-PLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CSSCCC----CC---G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCccC----cC---h-hhcCCCCCCEEEccCCccC
Confidence 654321 11 1 1789999999999998764
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.65 E-value=1.2e-09 Score=94.52 Aligned_cols=183 Identities=15% Similarity=-0.010 Sum_probs=87.4
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
+.+++|+++.+..-...+|..+..+++|++|+|+++.+. ..|.....+++|+.|+| +..+.+ .+...+..+|+|+.
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC--cCChHHhcCCCCCe
Confidence 456666665311112234555555666666666666554 23433445666666666 544432 11122445666666
Q ss_pred EEeeeeeccCCCeeeEEE-ECC-CcceEEEEEeecccc----c-------------cccCCcccEEEEcCccEEEEEEec
Q 038991 171 LCLKVYLKYDGPATNFII-SSS-TLKRFYWTVLVDDYN----F-------------AFNNFHHNCLIMAPLLQLLHVVDD 231 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i-~~~-~Lk~L~l~~~~~~~~----~-------------~~~~~~~~~~i~ap~L~~L~l~~~ 231 (287)
|++.+| ...+ ...-.+ ..+ +|+.|.+.++.-... + .+.+......-..++|+.|+++++
T Consensus 154 L~L~~N-~l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 154 ITFDGN-RISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EECCSS-CCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred EECcCC-cccC-cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 666666 3321 000000 112 455554444310000 0 001001111123466777777666
Q ss_pred ccc--ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 232 LMV--SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 232 ~~~--~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
... ...+..+++|+++++..+... ..+...+..+++++.|+++.|.|.
T Consensus 232 ~l~~~~~~~~~l~~L~~L~Ls~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 232 SLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ceeeecCcccccCCCCEEECcCCccc------CcCChHHhcCcCCCEEECcCCccc
Confidence 443 122455677777776533221 012345678888888888888774
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.64 E-value=1.7e-09 Score=91.35 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=87.3
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCCCc-ccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPVSG-MCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
.++++|+++.+.. ..++. .+..+++|++|+|+++.+..++... ..+++|+.|+| +..+.. .....+..+++|+
T Consensus 37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCC
T ss_pred CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCC
Confidence 3566666654432 23333 3445667777777766655544222 35677777777 555432 1112355667777
Q ss_pred eEEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCce
Q 038991 170 ELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQ 245 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~ 245 (287)
.|.+.++ ...+ ...-. -..++|+.|.++++ .. .+......-..++|++|+++++..... .+..+++|+
T Consensus 113 ~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n--~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 113 ELRLDRN-QLKS-LPPRVFDSLTKLTYLSLGYN--EL----QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCC-ccCe-eCHHHhCcCcCCCEEECCCC--cC----CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 7777766 4433 21111 13456666666666 22 110111111346677777766644321 244566666
Q ss_pred eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.+++..+... .. ....+..+++++.|.++.|.+
T Consensus 185 ~L~L~~N~l~-~~-----~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 185 TLKLDNNQLK-RV-----PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSCCS-CC-----CTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCcCC-cC-----CHHHhccccCCCEEEecCCCe
Confidence 6666433211 00 012345566666776666543
No 16
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.61 E-value=1.1e-10 Score=101.57 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=28.5
Q ss_pred CCCcccEEEeceee-ccc--cCCCcccCCCccEEEE-EE-EeCCcchHHHHHccCC-ccceEEeeee
Q 038991 116 SCRSLEVLKLDYDF-DIA--VPVSGMCFPNLKFLRV-SL-QYPENQLTEKLFSSCP-SIEELCLKVY 176 (287)
Q Consensus 116 ~~~~L~~L~L~~~~-~~~--~~~~~~~~~~L~~L~L-~~-~~~~~~~l~~l~~~cp-~Le~L~l~~c 176 (287)
.+++|++|+|++|. +.+ ++.....+++|+.|+| ++ .+.+ ..+...+..+| +|+.|++.+|
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCCEEEeCCC
Confidence 34555555555552 221 2212234555555555 55 3322 33444455555 5555555555
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.61 E-value=6.6e-10 Score=94.55 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=118.1
Q ss_pred CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEE-eCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQ-YPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~-~~~~~~l~~l~~~cp~L 168 (287)
+.+++|+++.+.. ..++ ..+..+++|++|+|+++.+... +.....+++|+.|+| +.. +.. .....+..+++|
T Consensus 32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~~~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTTTCTTC
T ss_pred CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc--cCHHHhcCCcCC
Confidence 5788888865543 3344 3456789999999999877664 435567999999999 765 432 112346789999
Q ss_pred ceEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCc
Q 038991 169 EELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFL 244 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L 244 (287)
+.|++.+| ...+ ...-.+ ..++|+.|.+.++ .. .+......-..++|++|+++++..... .+..+++|
T Consensus 108 ~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n--~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 108 HTLHLDRC-GLQE-LGPGLFRGLAALQYLYLQDN--AL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp CEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEECCCC-cCCE-ECHhHhhCCcCCCEEECCCC--cc----cccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 99999999 6544 221111 3578999999988 32 211111122468999999998866522 36778999
Q ss_pred eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 245 QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
+.+++..+.... .....+..+++++.|+++.+.|.
T Consensus 180 ~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 180 DRLLLHQNRVAH------VHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CEEECCSSCCCE------ECTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcccc------cCHhHccCcccccEeeCCCCcCC
Confidence 999886542211 11245678899999999988663
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=9e-10 Score=93.22 Aligned_cols=172 Identities=13% Similarity=0.106 Sum_probs=95.4
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
+.+++|++..+.. ..++ .+..+++|++|+++++.+..++ ....+++|+.|+| +..+.+ .....+..+++|+.|
T Consensus 41 ~~L~~L~l~~~~i--~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 41 NSIDQIIANNSDI--KSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKEL 114 (272)
T ss_dssp TTCCEEECTTSCC--CCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEE
T ss_pred cceeeeeeCCCCc--cccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc--cChhHhcCCcCCCEE
Confidence 5677776644332 2222 3455677777777777665544 4556777777777 665543 112335667777777
Q ss_pred EeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeE
Q 038991 172 CLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTV 247 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~ 247 (287)
++.+| ...+ ...-.+ ..++|+.|.+.++ .. .+......-..++|+.|+++++..... .++.+++|+.+
T Consensus 115 ~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n--~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 115 VLVEN-QLQS-LPDGVFDKLTNLTYLNLAHN--QL----QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp ECTTS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCC-cCCc-cCHHHhccCCCCCEEECCCC--cc----CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 77777 5433 221111 3467777777776 22 110111112356777777777754422 24566777777
Q ss_pred EEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
++..+... . .....+..+++++.|+++.|.+
T Consensus 187 ~L~~N~l~-~-----~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 187 RLYQNQLK-S-----VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ECCSSCCS-C-----CCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcCC-c-----cCHHHHhCCcCCCEEEccCCCc
Confidence 76543221 0 0123456677777777776654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.60 E-value=2.7e-08 Score=92.21 Aligned_cols=176 Identities=12% Similarity=0.121 Sum_probs=115.6
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
+.+++|+++.+... ...|..+..+++|++|+|+++.+...+ .....+++|+.|+| +..+.+ .....+.++++|+.
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCCCcE
Confidence 57899998766532 223456677899999999999876644 24568999999999 877654 23445788999999
Q ss_pred EEeeeeeccCCCee--eEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCce
Q 038991 171 LCLKVYLKYDGPAT--NFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQ 245 (287)
Q Consensus 171 L~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~ 245 (287)
|++++| ...+ .. ...-..++|+.|.+.++ ... .+......-..++|++|++.++.... ..++.+++|+
T Consensus 103 L~Ls~n-~l~~-~~~~~~~~~l~~L~~L~L~~n--~~~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 103 LNLMGN-PYQT-LGVTSLFPNLTNLQTLRIGNV--ETF---SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp EECTTC-CCSS-SCSSCSCTTCTTCCEEEEEES--SSC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred EECCCC-cccc-cchhhhhhccCCccEEECCCC--ccc---cccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 999999 6543 21 11224578999999998 310 00000111235889999999886542 3456677788
Q ss_pred eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+++++.+... .....++..+++++.|+++.+.+
T Consensus 176 ~L~l~~n~~~------~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 176 HLTLHLSESA------FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEEECSBST------THHHHHHHSTTTBSEEEEESCBC
T ss_pred eEecccCccc------ccchhhHhhcccccEEEccCCcc
Confidence 8777644221 11233456677788887777654
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.58 E-value=3.9e-09 Score=92.14 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=69.6
Q ss_pred cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
..+++|++|+++++.+...+ ....+++|+.|++ ++...... .. +..+++|+.|.+.+| ...+ ... .-..++|
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~-~~~~-~~~-~~~l~~L 179 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTES-KVKD-VTP-IANLTDL 179 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCG-GGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSS-CCCC-CGG-GGGCTTC
T ss_pred cCCCcCCEEECcCCcccCch-hhccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCC-CcCC-chh-hccCCCC
Confidence 33444555555544443333 2334455555555 43222111 11 444555555555555 3332 221 1133556
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEEEEccccccChhhHHHHHhcCC
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGIL 272 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~ 272 (287)
+.|.+.+| .. .+ ... .-..++|+.|.+.++..... .+..+++|+++++..+... .. .. +..++
T Consensus 180 ~~L~l~~n--~l----~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~----~~---~~-~~~l~ 243 (347)
T 4fmz_A 180 YSLSLNYN--QI----ED-ISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT----DL---SP-LANLS 243 (347)
T ss_dssp SEEECTTS--CC----CC-CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC----CC---GG-GTTCT
T ss_pred CEEEccCC--cc----cc-ccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC----CC---cc-hhcCC
Confidence 66665555 21 11 111 12345666666666554322 2566677777776543211 11 11 67788
Q ss_pred cceEEEEecCee
Q 038991 273 NCKSLTLSSGVI 284 (287)
Q Consensus 273 ~v~~L~l~~~~i 284 (287)
+++.|+++.+.|
T Consensus 244 ~L~~L~l~~n~l 255 (347)
T 4fmz_A 244 QLTWLEIGTNQI 255 (347)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcc
Confidence 888888887755
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.58 E-value=5.8e-09 Score=89.20 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=103.9
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
..+++|+++.+.. ..++ .+..+++|++|+|+++.+...+ ....+++|+.|+| +..+.+ +.. +..+++|+.|
T Consensus 46 ~~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD---LSS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC---GGG-GTTCTTCCEE
T ss_pred CcccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCC---Chh-hccCCCCCEE
Confidence 4677777754432 2333 2556788888888888776655 3567888888888 766654 222 6778888888
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecCCCceeEEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDLQFLQTVNLA 250 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~ 250 (287)
++.+| ...+ ...+. ..++|+.|.++++ .. .+ . ...-..++|+.|+++++.... ..+..+++|+.++++
T Consensus 118 ~L~~n-~i~~-~~~l~-~l~~L~~L~l~~n--~l----~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 118 SLEHN-GISD-INGLV-HLPQLESLYLGNN--KI----TD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp ECTTS-CCCC-CGGGG-GCTTCCEEECCSS--CC----CC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred ECCCC-cCCC-Chhhc-CCCCCCEEEccCC--cC----Cc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence 88888 6544 32211 3467888888777 32 22 1 112245788888888776542 236677888888775
Q ss_pred EEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.+... . + .-+..+++++.|.++.|.|.
T Consensus 187 ~N~i~----~---l-~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 187 KNHIS----D---L-RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCC----B---C-GGGTTCTTCSEEEEEEEEEE
T ss_pred CCcCC----C---C-hhhccCCCCCEEECcCCccc
Confidence 44221 0 1 12677888888888877653
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.57 E-value=1.6e-08 Score=92.06 Aligned_cols=168 Identities=11% Similarity=0.074 Sum_probs=76.7
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
++++|++..+. ...+|. +..+++|++|+|++|.+...+ ....+++|+.|++ +..+.+-.. +..+++|+.|+
T Consensus 47 ~l~~L~l~~~~--i~~l~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~ 118 (466)
T 1o6v_A 47 QVTTLQADRLG--IKSIDG-VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP----LANLTNLTGLT 118 (466)
T ss_dssp TCCEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred cccEEecCCCC--CccCcc-hhhhcCCCEEECCCCccCCch-hhhccccCCEEECCCCccccChh----hcCCCCCCEEE
Confidence 55555553322 222332 344555666666665554444 2445556666666 554443111 45556666666
Q ss_pred eeeeeccCCCeeeEEEECCCcceEEEEEeecccc-c-c---------------ccCCcccEEEEcCccEEEEEEeccccc
Q 038991 173 LKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYN-F-A---------------FNNFHHNCLIMAPLLQLLHVVDDLMVS 235 (287)
Q Consensus 173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~-~-~---------------~~~~~~~~~i~ap~L~~L~l~~~~~~~ 235 (287)
+.+| ...+ ... .-..++|+.|.+.+| ... . . ..+ ... .-..++|+.|+++++....
T Consensus 119 L~~n-~l~~-~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNN-QITD-IDP-LKNLTNLNRLELSSN--TISDISALSGLTSLQQLSFGNQVTD-LKP-LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSS-CCCC-CGG-GTTCTTCSEEEEEEE--EECCCGGGTTCTTCSEEEEEESCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCC-CCCC-ChH-HcCCCCCCEEECCCC--ccCCChhhccCCcccEeecCCcccC-chh-hccCCCCCEEECcCCcCCC
Confidence 6555 4433 222 112345555555555 110 0 0 000 000 1123556666665554331
Q ss_pred -eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 236 -YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 236 -~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
..+..+++|+.+++..+... ... -+..+++++.|.++.+.+
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~----~~~----~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQIS----DIT----PLGILTNLDELSLNGNQL 233 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCC----CCG----GGGGCTTCCEEECCSSCC
T ss_pred ChhhccCCCCCEEEecCCccc----ccc----cccccCCCCEEECCCCCc
Confidence 12445566666655432111 000 155667777777776654
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.57 E-value=3.8e-09 Score=91.26 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCceEEEEEEecCc-cccCCCCCcCCCcccEEEece-eecc-ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDY-DFDI-AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
..+++|++..+... ...+|..+..+++|++|+|++ +.+. ..|.....+++|+.|+| +..+.+ .+...+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCCCC
Confidence 47899999876543 226788888899999999995 5444 35546678999999999 876642 223347789999
Q ss_pred ceEEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 169 EELCLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
+.|+++++ ...+......-..++|+.|.++++
T Consensus 128 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 128 VTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp CEEECCSS-EEESCCCGGGGGCTTCCEEECCSS
T ss_pred CEEeCCCC-ccCCcCChHHhcCCCCCeEECcCC
Confidence 99999999 554311111124689999999887
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.57 E-value=3.8e-09 Score=84.97 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=105.1
Q ss_pred cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCC
Q 038991 115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSST 192 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~ 192 (287)
..+++|++|+++++.+.+++ ....+++|+.|++ ++.+.+- . .+..+|+|+.|++.+| ...+ ...-.+ ..++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~---~-~l~~l~~L~~L~l~~n-~l~~-~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY---N-PISGLSNLERLRIMGK-DVTS-DKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC---G-GGTTCTTCCEEEEECT-TCBG-GGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc---h-hhhcCCCCCEEEeECC-ccCc-ccChhhcCCCC
Confidence 35678999999999887777 7778999999999 7755442 2 4678999999999999 6543 111112 4589
Q ss_pred cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc-cc-ceeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991 193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL-MV-SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG 270 (287)
Q Consensus 193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~-~~-~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 270 (287)
|+.|.++++ ... +......-..|+|++|+++++. .. ...+..+++|+.+++..+... . +. .+..
T Consensus 114 L~~L~Ls~n--~i~----~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~----~---~~-~l~~ 179 (197)
T 4ezg_A 114 LTLLDISHS--AHD----DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH----D---YR-GIED 179 (197)
T ss_dssp CCEEECCSS--BCB----GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC----C---CT-TGGG
T ss_pred CCEEEecCC--ccC----cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc----C---hH-Hhcc
Confidence 999999998 321 1011112246899999999986 44 235778999999998654221 1 11 5788
Q ss_pred CCcceEEEEecCeeE
Q 038991 271 ILNCKSLTLSSGVIL 285 (287)
Q Consensus 271 l~~v~~L~l~~~~i~ 285 (287)
+++++.|.++.|.|.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 999999999998774
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.56 E-value=4.6e-09 Score=92.12 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=17.1
Q ss_pred HHHHHhcCCcceEEEEecCeeE
Q 038991 264 VVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 264 ~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
+.+.+..+++++.|+++.|.|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC
T ss_pred hHHHHhcccCCCEEECCCCCCC
Confidence 5566788889999999887653
No 26
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=6.5e-09 Score=87.60 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=17.0
Q ss_pred cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEe
Q 038991 115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQY 152 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~ 152 (287)
..+++|++|+|+++.+...+ ....+++|+.|+| +..+
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~-~l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRL 97 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred hhCCCCCEEECCCCccCCCh-hhccCCCCCEEECCCCcc
Confidence 34445555555555444333 2334455555555 4433
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.53 E-value=1.3e-08 Score=92.80 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHHhcCCcceEEEEecCeeE
Q 038991 266 QLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 266 ~~l~~l~~v~~L~l~~~~i~ 285 (287)
..+..+++++.|+++.+.|.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCC
T ss_pred HHhcCccccCeeECCCCcCC
Confidence 56778888888888877653
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.53 E-value=2.2e-08 Score=91.15 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=98.6
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
..+++|++..+.. ..++. +..+++|++|++++|.+...+ ....+++|+.|++ ++.+.+-. -+..+++|+.|
T Consensus 90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L 161 (466)
T 1o6v_A 90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQL 161 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEE
T ss_pred ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCCh----hhccCCcccEe
Confidence 4556665544332 22222 445566666666666555444 3456666777777 66665422 15566677776
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc-ceeeecCCCceeEEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV-SYEVHDLQFLQTVNLA 250 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-~~~~~~~p~L~~~~l~ 250 (287)
.+.++ . .+ ... .-..++|+.|.++++ .. .+ . ...-..++|++|++.++... ...++.+++|+++++.
T Consensus 162 ~l~~~-~-~~-~~~-~~~l~~L~~L~l~~n--~l----~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 162 SFGNQ-V-TD-LKP-LANLTTLERLDISSN--KV----SD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229 (466)
T ss_dssp EEEES-C-CC-CGG-GTTCTTCCEEECCSS--CC----CC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred ecCCc-c-cC-chh-hccCCCCCEEECcCC--cC----CC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence 66543 1 12 111 113467888888777 32 21 1 11224689999999988765 2347789999999986
Q ss_pred EEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.+... .. ..+..+++++.|+++.+.|.
T Consensus 230 ~n~l~----~~----~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 230 GNQLK----DI----GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp SSCCC----CC----GGGGGCTTCSEEECCSSCCC
T ss_pred CCCcc----cc----hhhhcCCCCCEEECCCCccc
Confidence 44221 11 34778999999999988763
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.53 E-value=3.6e-09 Score=90.81 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=29.1
Q ss_pred CccEEEEEEecccc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 221 PLLQLLHVVDDLMV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 221 p~L~~L~l~~~~~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
++|++|++.++... ...+..+++|+.+++..+... ......+..+++++.|.++.+.|
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE------QLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC------CcCHHHhcCCCCCCEEECCCCcc
Confidence 55555555554332 123445555555555422110 00123456677788887777655
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.52 E-value=3.4e-09 Score=96.17 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=31.9
Q ss_pred cCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 220 APLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.++|+.|++.++.... ..+.++++|+.+++..+... .. ....+..+++++.|+++.|.+
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~-----~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL-----PHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CC-----CTTSSTTCTTCCEEECCSSCE
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-cc-----ChHHhccccCCCEEEccCCCc
Confidence 4566666666554431 23455666666666533211 00 123456677777777777755
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.52 E-value=6.5e-09 Score=81.25 Aligned_cols=104 Identities=21% Similarity=0.106 Sum_probs=71.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
+.+++|++..+......+|..+..+++|++|++++|.+.... ....+++|+.|+| +..+.+. +...+..+|+|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGG--LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCS-SCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChh-hhccCCCCCEEECcCCcCchH--HHHHHhhCCCCCEE
Confidence 578888887665432367777777888999999888766553 5667888999988 7776541 44556678889999
Q ss_pred EeeeeeccCCCeee--EEEECCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPATN--FIISSSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~~--l~i~~~~Lk~L~l~~~ 201 (287)
++++| ...+ ... .--..++|+.|.+.++
T Consensus 101 ~Ls~N-~l~~-~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 101 NLSGN-KLKD-ISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp ECBSS-SCCS-SGGGGGGSSCSCCCEEECCSS
T ss_pred eccCC-ccCc-chhHHHHhcCCCCCEEEeeCC
Confidence 98888 6554 221 1113456666666666
No 32
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=4.1e-10 Score=105.37 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=118.4
Q ss_pred cCCceEEEEEEec-CccccCCCCCcCCCcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEE-eCCcchHHHHHc
Q 038991 92 MRDVRELELNIEN-QQRLELPESIYSCRSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQ-YPENQLTEKLFS 163 (287)
Q Consensus 92 ~~~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~-~~~~~~l~~l~~ 163 (287)
-+++++|++..+. .....++.....|++|++|+|++|.+.+ ++.....+++|+.|++ ++. ..+...+..+..
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 3699999998663 2233355555578999999999987543 2212237889999999 775 223366888888
Q ss_pred cCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccc----------------------ccc-c-cCCcccEEEE
Q 038991 164 SCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDY----------------------NFA-F-NNFHHNCLIM 219 (287)
Q Consensus 164 ~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~----------------------~~~-~-~~~~~~~~i~ 219 (287)
+||+|+.|++.+|....+ ...+....++|+.|.+..+.... .+. . .+....+.-.
T Consensus 209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 999999999999922222 22223356899999866551000 000 0 0000011114
Q ss_pred cCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEec
Q 038991 220 APLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSS 281 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~ 281 (287)
.++|++|+++++.... ..+..+|+|+++++..+. ....+..+.+.+++++.|.++.
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI------EDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG------HHHHHHHHHHHCTTCCEEEEEC
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc------CHHHHHHHHHhCCCCCEEEEec
Confidence 6899999998886431 124588999999987441 1345677888899999999943
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.51 E-value=1.9e-08 Score=91.72 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=44.5
Q ss_pred CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-E
Q 038991 113 SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-S 189 (287)
Q Consensus 113 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~ 189 (287)
.+..+++|++|+|+++.+... +.....+++|+.|+| +..+.+ .....+..+++|+.|++.++ ...+ .....+ .
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n-~i~~-~~~~~~~~ 198 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHL-NINA-IRDYSFKR 198 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEESC-CCCE-ECTTCSCS
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCCC-cCcE-eChhhccc
Confidence 344455666666665544332 213345666777777 555432 22344666777777777776 4322 111111 2
Q ss_pred CCCcceEEEEEe
Q 038991 190 SSTLKRFYWTVL 201 (287)
Q Consensus 190 ~~~Lk~L~l~~~ 201 (287)
.++|+.|.+.++
T Consensus 199 l~~L~~L~l~~~ 210 (477)
T 2id5_A 199 LYRLKVLEISHW 210 (477)
T ss_dssp CTTCCEEEEECC
T ss_pred CcccceeeCCCC
Confidence 356666666665
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.51 E-value=4.3e-10 Score=96.66 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=107.2
Q ss_pred cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
..++++|+++.+. ...+|..+..+++|++|+++++.+...+. ....+++|+.|++ +..+.. .....+.++++|
T Consensus 77 ~~~L~~L~Ls~n~--i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L 152 (306)
T 2z66_A 77 TTSLKYLDLSFNG--VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSL 152 (306)
T ss_dssp CSCCCEEECCSCS--EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE--CSTTTTTTCTTC
T ss_pred ccccCEEECCCCc--cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc--cchhhcccCcCC
Confidence 3577887776554 23455556667888888888877665442 4457788888888 654432 223346678888
Q ss_pred ceEEeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCc
Q 038991 169 EELCLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFL 244 (287)
Q Consensus 169 e~L~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L 244 (287)
+.|++.+| ...+. .....-..++|+.|.++++ ... +......-..|+|++|+++++... ...+..+++|
T Consensus 153 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 153 EVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC--QLE----QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp CEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS--CCC----EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred CEEECCCC-ccccccchhHHhhCcCCCEEECCCC--CcC----CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 88888888 54320 0111113468888888877 321 100111123578889988887654 2246678888
Q ss_pred eeEEEEEEEccccccChhhHHHHHhcC-CcceEEEEecCeeE
Q 038991 245 QTVNLAILFLQWSVLNPWEVVQLLNGI-LNCKSLTLSSGVIL 285 (287)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~i~ 285 (287)
+.+++..+..... ....+..+ ++++.|+++.|.+.
T Consensus 226 ~~L~L~~N~l~~~------~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 226 QVLDYSLNHIMTS------KKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CEEECTTSCCCBC------SSSSCCCCCTTCCEEECTTCCEE
T ss_pred CEeECCCCCCccc------CHHHHHhhhccCCEEEccCCCee
Confidence 8888764422111 11234555 48899999888764
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.50 E-value=3.8e-09 Score=95.52 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=93.1
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
.++++|+|+.+. ...++. .+..+++|++|+|+++.+..++. ....+++|+.|+| ++.... ..-...+.++++|+
T Consensus 112 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 112 ANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLR 188 (440)
T ss_dssp SSCCEEECCSSC--CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-EECTTTTTTCSSCC
T ss_pred ccCCEEECCCCc--CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-eeCcchhhcccccC
Confidence 456666654433 223333 33445666777776665544332 2345667777766 533221 11112355677777
Q ss_pred eEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCcee
Q 038991 170 ELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQT 246 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~ 246 (287)
.|++.+| .... +..+ ...++|+.|+++++ ... +......-..++|++|++.++.... ..+.++++|+.
T Consensus 189 ~L~L~~n-~l~~-~~~~-~~l~~L~~L~Ls~N--~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 189 YLNLAMC-NLRE-IPNL-TPLIKLDELDLSGN--HLS----AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp EEECTTS-CCSS-CCCC-TTCSSCCEEECTTS--CCC----EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred eecCCCC-cCcc-cccc-CCCcccCEEECCCC--ccC----ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 7777777 5544 3321 13457777777766 221 1001111135777777777766542 24556777777
Q ss_pred EEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 247 VNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+++..+... . .....+..+++++.|+++.|.+
T Consensus 260 L~L~~N~l~-~-----~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 260 INLAHNNLT-L-----LPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCC-C-----CCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCCCC-c-----cChhHhccccCCCEEEcCCCCc
Confidence 777543221 1 0124566778888888887765
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=5.4e-09 Score=98.33 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
..+++|++..+. ...++ .+..+++|+.|+|++|.+..++ ....+++|+.|+| +..+.+-. -+..+++|+.|
T Consensus 43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L 114 (605)
T 1m9s_A 43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSL 114 (605)
T ss_dssp TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCT----TSTTCTTCCEE
T ss_pred CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCCCh----hhccCCCCCEE
Confidence 455555554332 22233 3455666777777766655544 3556677777777 65554311 24566777777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc-ceeeecCCCceeEEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV-SYEVHDLQFLQTVNLA 250 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~-~~~~~~~p~L~~~~l~ 250 (287)
+|++| ...+ +..+ ...++|+.|.+++| .. .+ . ...-..++|+.|+++++... ...+..+++|+.+++.
T Consensus 115 ~Ls~N-~l~~-l~~l-~~l~~L~~L~Ls~N--~l----~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 115 SLEHN-GISD-INGL-VHLPQLESLYLGNN--KI----TD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183 (605)
T ss_dssp ECTTS-CCCC-CGGG-GGCTTCSEEECCSS--CC----CC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred EecCC-CCCC-Cccc-cCCCccCEEECCCC--cc----CC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence 77766 5443 2211 13456666666666 22 11 1 11113466777777666543 1235666677766665
Q ss_pred EEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 251 ILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.+... . + .-+..+++++.|.++.+.|
T Consensus 184 ~N~i~-~------l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 184 KNHIS-D------L-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SSCCC-B------C-GGGTTCTTCSEEECCSEEE
T ss_pred CCCCC-C------C-hHHccCCCCCEEEccCCcC
Confidence 43211 0 1 2356666777777766654
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.49 E-value=2.1e-08 Score=96.97 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=97.7
Q ss_pred cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
..+++|++|+|++|.+.........+++|+.|+| +..+.+ .+...+..+++|+.|++.+| ...+..... ..++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG--DFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC--cccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCC
Confidence 5678888888888877553224667889999999 777653 35556788999999999998 554311122 56788
Q ss_pred ceEEEEEeeccccccccCCcccEEEE-cCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHh
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIM-APLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLN 269 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~-ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~ 269 (287)
+.|.+.+| .. .+........ .++|++|+++++... ...++++++|+.+++..+...... -...+.
T Consensus 272 ~~L~L~~n--~l----~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i-----p~~~l~ 340 (768)
T 3rgz_A 272 QYLSLAEN--KF----TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-----PMDTLL 340 (768)
T ss_dssp CEEECCSS--EE----EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC-----CHHHHT
T ss_pred CEEECcCC--cc----CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC-----CHHHHh
Confidence 88888887 21 1101111112 378888888777543 234667788888877644221010 123466
Q ss_pred cCCcceEEEEecCeeE
Q 038991 270 GILNCKSLTLSSGVIL 285 (287)
Q Consensus 270 ~l~~v~~L~l~~~~i~ 285 (287)
.+++++.|.++.+.+.
T Consensus 341 ~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFS 356 (768)
T ss_dssp TCTTCCEEECCSSEEE
T ss_pred cCCCCCEEeCcCCccC
Confidence 6777777777766653
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.47 E-value=3.5e-09 Score=91.94 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=29.2
Q ss_pred cCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 220 APLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.++|++|+++++..... .+..+++|+++++..+... .+...+..+++++.|+++.|.|
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcC
Confidence 35666666665544311 2445566666665433211 1112245566666666666554
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.46 E-value=1.8e-08 Score=97.45 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=84.2
Q ss_pred CCceEEEEEEecCccccCCC--CCcCCCcccEEEeceeeccc-cCCCc-ccCCCccEEEE-EEEeCCcch-HHHHHccCC
Q 038991 93 RDVRELELNIENQQRLELPE--SIYSCRSLEVLKLDYDFDIA-VPVSG-MCFPNLKFLRV-SLQYPENQL-TEKLFSSCP 166 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~-~~~~~-~~~~~L~~L~L-~~~~~~~~~-l~~l~~~cp 166 (287)
+++++|+|+.+... ..+|. .+..+++|++|+|++|.+.. .|... ..+++|+.|+| +..+.+... ....+.+|+
T Consensus 100 ~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 47777777654421 23444 56677888888888776643 22122 56788888888 666543111 112367788
Q ss_pred ccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCC
Q 038991 167 SIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQF 243 (287)
Q Consensus 167 ~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~ 243 (287)
+|+.|++.+| ...+ .... -..++|+.|+++++ .. .+... ..-..++|++|+++++... ...++++++
T Consensus 179 ~L~~L~Ls~n-~l~~-~~~~-~~l~~L~~L~Ls~n--~l----~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 179 ELKHLAISGN-KISG-DVDV-SRCVNLEFLDVSSN--NF----STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp TCCEEECCSS-EEES-CCBC-TTCTTCCEEECCSS--CC----CSCCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred CCCEEECCCC-cccc-cCCc-ccCCcCCEEECcCC--cC----CCCCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 8888888887 5433 2211 24467777777776 22 22111 1223467777777666543 223455666
Q ss_pred ceeEEEEE
Q 038991 244 LQTVNLAI 251 (287)
Q Consensus 244 L~~~~l~~ 251 (287)
|+.+++..
T Consensus 249 L~~L~Ls~ 256 (768)
T 3rgz_A 249 LKLLNISS 256 (768)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 66666543
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.46 E-value=5.2e-08 Score=89.74 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=118.8
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
..+++|+++.+....... ...+++|++|+++++.+.. .|.....+++|+.|+| +..+.+-..+...+..+++|+.
T Consensus 302 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred CceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 468888887654322111 1467899999999998766 4445678999999999 8877542345566889999999
Q ss_pred EEeeeeeccCCCee-eEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeE
Q 038991 171 LCLKVYLKYDGPAT-NFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTV 247 (287)
Q Consensus 171 L~l~~c~~~~~~~~-~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~ 247 (287)
|++++| ...+.+. ......++|+.|.++++ ... ......+ .++|+.|+++++....+ .+..+++|+.+
T Consensus 379 L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N--~l~---~~~~~~l---~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 379 LDISQN-SVSYDEKKGDCSWTKSLLSLNMSSN--ILT---DTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449 (520)
T ss_dssp EECCSS-CCBCCGGGCSCCCCTTCCEEECCSS--CCC---GGGGGSC---CTTCCEEECCSSCCCCCCGGGGGCTTCCEE
T ss_pred EECCCC-cCCcccccchhccCccCCEEECcCC--CCC---cchhhhh---cccCCEEECCCCcccccchhhhcCCCCCEE
Confidence 999999 6543111 11224579999999998 321 0001111 27999999999876522 34588999999
Q ss_pred EEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
++..+... .. +. ..+..+++++.|+++.|.+.
T Consensus 450 ~L~~N~l~-~l--~~---~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 450 NVASNQLK-SV--PD---GIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp ECCSSCCC-CC--CT---TTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCC-cc--CH---HHhccCCcccEEECcCCCCc
Confidence 98755322 11 11 25788999999999988763
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.46 E-value=4e-08 Score=87.28 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
+++++|+++.+.. ..++ ..+..+++|++|+|+++.+..+|.. ...+++|+.|+| +..+.. .....+..+++|+
T Consensus 93 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 93 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQ 168 (390)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCC
T ss_pred CCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCC
Confidence 3556666544332 2222 2334456666666666655554422 245666666666 544432 1112245566666
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCC-------------------cceEEEEEeeccccccccCCcccEE-EEcCccEEEEE
Q 038991 170 ELCLKVYLKYDGPATNFII-SSST-------------------LKRFYWTVLVDDYNFAFNNFHHNCL-IMAPLLQLLHV 228 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~-------------------Lk~L~l~~~~~~~~~~~~~~~~~~~-i~ap~L~~L~l 228 (287)
.|++.++ ...+ . .+ ..++ |+.|.+.++ ... .+. ...++|+.|++
T Consensus 169 ~L~l~~n-~l~~-~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n--~l~--------~~~~~~~~~L~~L~l 233 (390)
T 3o6n_A 169 NLQLSSN-RLTH-V---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN--SIN--------VVRGPVNVELTILKL 233 (390)
T ss_dssp EEECCSS-CCSB-C---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS--CCC--------EEECCCCSSCCEEEC
T ss_pred EEECCCC-cCCc-c---ccccccccceeecccccccccCCCCcceEEECCCC--eee--------eccccccccccEEEC
Confidence 6666666 3322 1 00 1133 333333333 110 000 01256777777
Q ss_pred Eecccc-ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 229 VDDLMV-SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 229 ~~~~~~-~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.++... ...++.+++|+++++..+.... .....+..+++++.|.++.+.|.
T Consensus 234 ~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 234 QHNNLTDTAWLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECCSSCCC
T ss_pred CCCCCcccHHHcCCCCccEEECCCCcCCC------cChhHccccccCCEEECCCCcCc
Confidence 666544 2345667777777775432110 11245667788888888877653
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.44 E-value=8.9e-09 Score=95.78 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=29.0
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV 148 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L 148 (287)
.++++|++..+. ...+|..+..+ +|++|++++|.+..+|. ..+++|+.|++
T Consensus 282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTF 332 (570)
T ss_dssp TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeC
Confidence 467777775543 23456555555 77777777766554441 34455555554
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.44 E-value=2.1e-09 Score=100.91 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=39.3
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
++++|+++.+. ...+|..+..+++|++|+++++.+... +.....+++|+.|++ +..+.. ......+..+++|+.|
T Consensus 279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLREL 355 (606)
T ss_dssp TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSSTTTTCTTCCEE
T ss_pred CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchhhhhccCcCCEE
Confidence 45555544332 234555555556666666666654432 213345566666666 543321 1111124456666666
Q ss_pred Eeeee
Q 038991 172 CLKVY 176 (287)
Q Consensus 172 ~l~~c 176 (287)
++++|
T Consensus 356 ~l~~n 360 (606)
T 3t6q_A 356 DLSHD 360 (606)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66666
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.41 E-value=1.2e-08 Score=86.09 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=113.7
Q ss_pred ceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 95 VRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 95 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
.+.++++.. ....+|..+. ++|++|+|+++.+..++. ....+++|+.|+| +..+.. ....++..+++|+.|+
T Consensus 18 ~~~l~~~~~--~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCSSK--KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECTTS--CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEE
T ss_pred CCEEEccCC--CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEE
Confidence 445554322 2345565433 679999999998776653 4568999999999 876643 2234467899999999
Q ss_pred eeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEE
Q 038991 173 LKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVN 248 (287)
Q Consensus 173 l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~ 248 (287)
+.++ ...+ ...-. -..++|+.|.+.++ .. .+......-..++|++|+++++..... .++.+++|++++
T Consensus 92 l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n--~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 92 VTDN-KLQA-LPIGVFDQLVNLAELRLDRN--QL----KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CCSS-CCCC-CCTTTTTTCSSCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCC-cCCc-CCHhHcccccCCCEEECCCC--cc----CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 9999 6544 22111 13578999999988 32 221111122468999999999876532 367889999999
Q ss_pred EEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 249 LAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
+..+... . .. ...+.++++++.|+++.+.|+
T Consensus 164 L~~n~l~-~-~~----~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 164 LYNNQLK-R-VP----EGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCSSCCS-C-CC----TTTTTTCTTCCEEECCSSCCS
T ss_pred ecCCcCc-E-eC----hhHhccCCCcCEEECCCCcCC
Confidence 8644221 1 11 134678899999999988663
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.41 E-value=3.5e-09 Score=94.01 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=74.4
Q ss_pred cCCCcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEEeCCc--chHHHHHccC---------CccceEEeeeee
Q 038991 115 YSCRSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQYPEN--QLTEKLFSSC---------PSIEELCLKVYL 177 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~--~~l~~l~~~c---------p~Le~L~l~~c~ 177 (287)
..+++|++|+|+++.+.. ++.....+++|+.|+| ++.+.+. ..+...+..+ |+|+.|.+.+|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n- 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN- 169 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-
Confidence 345566666666654432 1112235566666666 5544321 1122233333 66666666666
Q ss_pred ccCCC-eeeE---EEECCCcceEEEEEeeccccccccCC--ccc-EEEEcCccEEEEEEecccc-------ceeeecCCC
Q 038991 178 KYDGP-ATNF---IISSSTLKRFYWTVLVDDYNFAFNNF--HHN-CLIMAPLLQLLHVVDDLMV-------SYEVHDLQF 243 (287)
Q Consensus 178 ~~~~~-~~~l---~i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~-~~i~ap~L~~L~l~~~~~~-------~~~~~~~p~ 243 (287)
...+. ...+ --..++|+.|.+.+| ... ..+. ... ..-..|+|+.|+++++... ...+..+++
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~--~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQN--GIR--PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSS--CCC--HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCC--CCC--HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 43210 1110 013456666666665 211 0000 000 1113466777777666541 123455666
Q ss_pred ceeEEEEEEEccccccChhhHHHHHhc--CCcceEEEEecCee
Q 038991 244 LQTVNLAILFLQWSVLNPWEVVQLLNG--ILNCKSLTLSSGVI 284 (287)
Q Consensus 244 L~~~~l~~~~~~~~~~~~~~~~~~l~~--l~~v~~L~l~~~~i 284 (287)
|+.+++..+.... .....+.+.++. +++++.|.++.|.|
T Consensus 246 L~~L~L~~n~i~~--~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 246 LRELGLNDCLLSA--RGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp CCEEECTTCCCCH--HHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred cCEEECCCCCCch--hhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 7766664332100 001123455544 77777777777655
No 46
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.41 E-value=5.4e-09 Score=79.99 Aligned_cols=104 Identities=20% Similarity=0.117 Sum_probs=70.0
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|+++.+......+|..+..+++|++|++++|.+...+ ....+++|+.|+| +..+.+ .+...+..+|+|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSG--GLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCT-TCCCCTTCCEEECCSSCCCS--CTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCch-hhhcCCCCCEEECCCCcccc--hHHHHhhhCCCCCEE
Confidence 468888876654322367777777888999999888776653 5667888999988 777654 255667778889999
Q ss_pred EeeeeeccCCCee--eEEEECCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPAT--NFIISSSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~ 201 (287)
++++| ...+ .. ...-..++|+.|.++++
T Consensus 94 ~ls~N-~i~~-~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 94 NLSGN-KIKD-LSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ECTTS-CCCS-HHHHGGGGGCTTCCEEECTTC
T ss_pred ECCCC-cCCC-hHHHHHHhhCCCCCEEeCcCC
Confidence 99888 6544 21 11112355555555555
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.40 E-value=4.8e-09 Score=95.18 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=73.6
Q ss_pred CCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE----E
Q 038991 116 SCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII----S 189 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i----~ 189 (287)
.+++|++|+|+++.+..++.. ...+++|+.|+| +..+.. .....+..+|+|+.|++.+| .. ...+.. .
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~~-~~---l~~i~~~~~~~ 194 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--IPSYAFNRVPSLMRLDLGEL-KK---LEYISEGAFEG 194 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCC-TT---CCEECTTTTTT
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce--eCHhHHhcCCcccEEeCCCC-CC---ccccChhhccC
Confidence 345555555555544333321 224555555555 443321 11122444555555555554 21 111111 2
Q ss_pred CCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHH
Q 038991 190 SSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQ 266 (287)
Q Consensus 190 ~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~ 266 (287)
.++|+.|.++++ .. .+ . ......++|++|+++++.... ..+.++++|+.+++..+.... ....
T Consensus 195 l~~L~~L~L~~n--~l----~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~ 260 (452)
T 3zyi_A 195 LFNLKYLNLGMC--NI----KD-M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL------IERN 260 (452)
T ss_dssp CTTCCEEECTTS--CC----SS-C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE------ECTT
T ss_pred CCCCCEEECCCC--cc----cc-c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce------ECHH
Confidence 345666666555 21 11 0 111234677777777765542 245667777777765332110 0124
Q ss_pred HHhcCCcceEEEEecCeeE
Q 038991 267 LLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 267 ~l~~l~~v~~L~l~~~~i~ 285 (287)
.+.++++++.|+++.|.|.
T Consensus 261 ~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp TTTTCTTCCEEECCSSCCS
T ss_pred HhcCCCCCCEEECCCCcCC
Confidence 4677889999999887653
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.40 E-value=5.9e-09 Score=97.88 Aligned_cols=51 Identities=18% Similarity=0.044 Sum_probs=26.5
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV 148 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L 148 (287)
.++++|++..+.. ..+| .+..+++|++|++++|.+..+| .. .+++|+.|++
T Consensus 285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEE
T ss_pred CCCCEEEecCccc--hhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeec
Confidence 4666666655432 2333 3444556666666666554444 22 4555555555
No 49
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.40 E-value=1.1e-08 Score=85.48 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=67.6
Q ss_pred CceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 94 DVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++.|++..+.. ..+ +..+..+++|++|+|+++.+...+.. ...+++|+.|+| +..+.. .....+..+++|+.
T Consensus 36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCE
T ss_pred CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCE
Confidence 455555543322 122 22334456666666666655443322 345666666666 544432 11123455666666
Q ss_pred EEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCcee
Q 038991 171 LCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQT 246 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~ 246 (287)
|++.++ ...+ ...-. -..++|+.|.++++ .. .+......-..++|+.|+++++..... .+..+++|+.
T Consensus 112 L~L~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 112 LYLGGN-QLKS-LPSGVFDRLTKLKELRLNTN--QL----QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp EECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EEcCCC-cCCC-cChhHhccCCcccEEECcCC--cC----CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 666666 4332 21111 12355666666555 21 110000111235666666665544311 2445556666
Q ss_pred EEEEEE
Q 038991 247 VNLAIL 252 (287)
Q Consensus 247 ~~l~~~ 252 (287)
+++..+
T Consensus 184 L~l~~N 189 (251)
T 3m19_A 184 ITLFGN 189 (251)
T ss_dssp EECCSC
T ss_pred EEeeCC
Confidence 655544
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.39 E-value=1.4e-09 Score=101.33 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee-EEEECCCc
Q 038991 116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN-FIISSSTL 193 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~-l~i~~~~L 193 (287)
.+++|++|++++|.+...+.....+++|+.|++ +..+.+ ......+.++++|+.|++.+| ...+ ... .--..++|
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L 447 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHT-HTRV-AFNGIFNGLSSL 447 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES-CTTSCTTTTCTTCCEEECTTS-CCEE-CCTTTTTTCTTC
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCcccc-ccchhhhhcCCCCCEEeCcCC-cccc-cchhhhhcCCcC
Confidence 445555555555544333323445666666666 544432 111123456677777777766 3321 100 00124577
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG 270 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 270 (287)
+.|.+.+| ... ++......-..|+|++|+++++.... ..++.+++|+.+++..+... .. ....+..
T Consensus 448 ~~L~l~~n--~l~---~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~ 516 (570)
T 2z63_A 448 EVLKMAGN--SFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SV-----PDGIFDR 516 (570)
T ss_dssp CEEECTTC--EEG---GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CC-----CTTTTTT
T ss_pred cEEECcCC--cCc---cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-CC-----CHHHhhc
Confidence 77777766 210 01011112235788888888776542 24567788888877644211 10 1235677
Q ss_pred CCcceEEEEecCee
Q 038991 271 ILNCKSLTLSSGVI 284 (287)
Q Consensus 271 l~~v~~L~l~~~~i 284 (287)
+++++.|+++.|.+
T Consensus 517 l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 517 LTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCCEEECCSSCB
T ss_pred ccCCcEEEecCCcc
Confidence 88888888888765
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.39 E-value=4.6e-08 Score=84.82 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=115.0
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|+++.+... ...|..+..+++|++|+|+++.+..+|.. .+++|+.|++ +..+.. .....+.++++|+.|
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITK--VRKSVFNGLNQMIVV 150 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCB--BCHHHHTTCTTCCEE
T ss_pred CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChh--hcccccEEECCCCcccc--cCHhHhcCCccccEE
Confidence 57888888655432 22355666778899999998877666522 3488999999 776643 334567889999999
Q ss_pred EeeeeeccCCC-eee-EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCcee
Q 038991 172 CLKVYLKYDGP-ATN-FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQT 246 (287)
Q Consensus 172 ~l~~c~~~~~~-~~~-l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~ 246 (287)
++.++ ..... ... .--..++|+.|.+.++ ... .....+ .++|++|+++++.... ..+..+++|+.
T Consensus 151 ~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~----~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 151 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADT--NIT----TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp ECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS--CCC----SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred ECCCC-cCCccCcChhhccCCCCcCEEECCCC--ccc----cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 99998 54310 000 0113578999999888 321 111111 2899999999887652 35678899999
Q ss_pred EEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 247 VNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
+++..+..... ....+..+++++.|+++.+.|.
T Consensus 221 L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 221 LGLSFNSISAV------DNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp EECCSSCCCEE------CTTTGGGSTTCCEEECCSSCCS
T ss_pred EECCCCcCcee------ChhhccCCCCCCEEECCCCcCc
Confidence 99865422110 1135678999999999988663
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.38 E-value=8.2e-09 Score=89.07 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=44.6
Q ss_pred cCCceEEEEEEecCccccCCCCC--cCCCcccEEEeceeeccccCCCcccC-----CCccEEEE-EEEeCCcchHHHHHc
Q 038991 92 MRDVRELELNIENQQRLELPESI--YSCRSLEVLKLDYDFDIAVPVSGMCF-----PNLKFLRV-SLQYPENQLTEKLFS 163 (287)
Q Consensus 92 ~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~L~~L~L-~~~~~~~~~l~~l~~ 163 (287)
-.++++|+++.+... ..+|..+ ...++|++|+|+++.+...|.....+ ++|+.|+| +..+.+- ....+.
T Consensus 94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~--~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF--SCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC--CTTTCC
T ss_pred cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc--hHHHhc
Confidence 468888888776542 2345444 55677888888777665443222233 66666666 5444321 111233
Q ss_pred cCCccceEEeeee
Q 038991 164 SCPSIEELCLKVY 176 (287)
Q Consensus 164 ~cp~Le~L~l~~c 176 (287)
.+++|+.|+++++
T Consensus 171 ~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 171 VFPALSTLDLSDN 183 (312)
T ss_dssp CCSSCCEEECCSC
T ss_pred cCCCCCEEECCCC
Confidence 4455555555544
No 53
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.38 E-value=6.3e-08 Score=82.70 Aligned_cols=142 Identities=18% Similarity=0.097 Sum_probs=96.0
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|+++.+.. ..++. +..+++|++|.|+++.+..++ ....+++|+.|+| +..+.+-. -+..+++|+.|
T Consensus 68 ~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~~----~l~~l~~L~~L 139 (291)
T 1h6t_A 68 PNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESL 139 (291)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEE
T ss_pred CCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCCh----hhcCCCCCCEE
Confidence 5788888866543 23333 667788888988888776665 5667888888888 77665522 25678888888
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecCCCceeEEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDLQFLQTVNLA 250 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~ 250 (287)
++++| ...+ ... --..++|+.|.++++ .. .+ ... .-..++|+.|+++++.... ..+..+++|+.+++.
T Consensus 140 ~l~~n-~l~~-~~~-l~~l~~L~~L~L~~N--~l----~~-~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 140 YLGNN-KITD-ITV-LSRLTKLDTLSLEDN--QI----SD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp ECCSS-CCCC-CGG-GGGCTTCSEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred EccCC-cCCc-chh-hccCCCCCEEEccCC--cc----cc-chh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence 88888 6554 321 113578888888887 32 22 112 2245788888888876552 246778888888887
Q ss_pred EEE
Q 038991 251 ILF 253 (287)
Q Consensus 251 ~~~ 253 (287)
.+.
T Consensus 209 ~n~ 211 (291)
T 1h6t_A 209 SQE 211 (291)
T ss_dssp EEE
T ss_pred CCc
Confidence 664
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=2.8e-08 Score=91.19 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=57.5
Q ss_pred CceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 94 DVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
++++|+|+.+.. ..+ |..+..+++|++|+|++|.+...+ ....+++|+.|+| +..+.+ +..+|+|+.|
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~-------l~~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-------LLVGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEE-------EEECTTCCEE
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCC-------CCCCCCcCEE
Confidence 677787766543 223 334556678888888887665443 3557788888888 666543 2234777777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
++.+| ...+ ... -..++|+.|.++++
T Consensus 105 ~L~~N-~l~~-~~~--~~l~~L~~L~L~~N 130 (487)
T 3oja_A 105 HAANN-NISR-VSC--SRGQGKKNIYLANN 130 (487)
T ss_dssp ECCSS-CCCC-EEE--CCCSSCEEEECCSS
T ss_pred ECcCC-cCCC-CCc--cccCCCCEEECCCC
Confidence 77777 5443 211 12356666666666
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.37 E-value=2.1e-09 Score=100.95 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=24.9
Q ss_pred CCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 117 CRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 117 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+++|++|++++|.+...+.....+++|+.|++ +..+.+. .-...+..+++|+.|++.+|
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTS
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCC
Confidence 34444444444433333323334555555555 4443321 00012344555555555555
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.37 E-value=5.2e-08 Score=89.37 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=100.2
Q ss_pred cCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCC
Q 038991 115 YSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSST 192 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~ 192 (287)
..+++|++|+|+++.+...++ ....+++|+.|+| +..+.+... +..+|+|+.|+|++| ...+ +. ..++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~----l~-~~~~ 100 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQE----LL-VGPS 100 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSS-EEEE----EE-ECTT
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCC-cCCC----CC-CCCC
Confidence 345689999999998876542 4568999999999 876653222 788999999999999 6443 32 3489
Q ss_pred cceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHh
Q 038991 193 LKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLN 269 (287)
Q Consensus 193 Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~ 269 (287)
|+.|.+++| .. .+ ...-..|+|+.|+++++... ...++.+++|+.++++.+... ......+..
T Consensus 101 L~~L~L~~N--~l----~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~ 166 (487)
T 3oja_A 101 IETLHAANN--NI----SR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAELAA 166 (487)
T ss_dssp CCEEECCSS--CC----CC---EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-----EEEGGGGGG
T ss_pred cCEEECcCC--cC----CC---CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-----CcChHHHhh
Confidence 999999998 32 22 11113488999999888754 335677888888887643221 111223444
Q ss_pred cCCcceEEEEecCee
Q 038991 270 GILNCKSLTLSSGVI 284 (287)
Q Consensus 270 ~l~~v~~L~l~~~~i 284 (287)
.+++++.|+++.|.|
T Consensus 167 ~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 167 SSDTLEHLNLQYNFI 181 (487)
T ss_dssp GTTTCCEEECTTSCC
T ss_pred hCCcccEEecCCCcc
Confidence 667777777776655
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.37 E-value=5.1e-08 Score=80.59 Aligned_cols=102 Identities=8% Similarity=0.040 Sum_probs=58.2
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceee-ccccCC-CcccCCCccEEEE-EE-EeCCcchHHHHHccCCc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDF-DIAVPV-SGMCFPNLKFLRV-SL-QYPENQLTEKLFSSCPS 167 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L-~~-~~~~~~~l~~l~~~cp~ 167 (287)
..+++|++..+.. ..+|. .+..+++|++|+++++. +..++. ....+++|+.|+| ++ .+.. .-...+.++++
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTT
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCC
Confidence 3677777765542 33443 34456778888887775 544442 3456778888888 63 2221 11123566778
Q ss_pred cceEEeeeeeccCCCeeeEEEECCCcc---eEEEEEe
Q 038991 168 IEELCLKVYLKYDGPATNFIISSSTLK---RFYWTVL 201 (287)
Q Consensus 168 Le~L~l~~c~~~~~~~~~l~i~~~~Lk---~L~l~~~ 201 (287)
|+.|++.+| ...+ +.. --..++|+ .|.+.++
T Consensus 107 L~~L~l~~n-~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 107 LKFLGIFNT-GLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CCEEEEEEE-CCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred CCEEeCCCC-CCcc-ccc-cccccccccccEEECCCC
Confidence 888888877 5544 333 11234455 6666655
No 58
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.36 E-value=3.5e-08 Score=92.79 Aligned_cols=141 Identities=18% Similarity=0.103 Sum_probs=82.7
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|+|+.+.. ..+++ +..+++|+.|.|++|.+..++ ....+++|+.|+| +..+.+-. -+..||+|+.|
T Consensus 65 ~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L 136 (605)
T 1m9s_A 65 PNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESL 136 (605)
T ss_dssp TTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG----GGGGCTTCSEE
T ss_pred CCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc----cccCCCccCEE
Confidence 5677777654432 22332 556677777777777665555 5566777777777 66655421 25567777777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eeeecCCCceeEEEE
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEVHDLQFLQTVNLA 250 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~~~~p~L~~~~l~ 250 (287)
.|++| ...+ ...+ -..++|+.|.+++| .. .+ ... .-..|+|+.|+++++.... ..+..+++|+.+++.
T Consensus 137 ~Ls~N-~l~~-l~~l-~~l~~L~~L~Ls~N--~l----~~-~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 137 YLGNN-KITD-ITVL-SRLTKLDTLSLEDN--QI----SD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp ECCSS-CCCC-CGGG-GSCTTCSEEECCSS--CC----CC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred ECCCC-ccCC-chhh-cccCCCCEEECcCC--cC----CC-chh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 77777 5544 3111 13467777777776 22 22 111 2235677777777765442 245667777777766
Q ss_pred EE
Q 038991 251 IL 252 (287)
Q Consensus 251 ~~ 252 (287)
.+
T Consensus 206 ~N 207 (605)
T 1m9s_A 206 SQ 207 (605)
T ss_dssp SE
T ss_pred CC
Confidence 44
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.36 E-value=2.8e-08 Score=85.91 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=49.6
Q ss_pred CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++++|+++.+.. ..++ ..+..+++|++|+|+++.+...+ ....+++|+.|+| +..+.+ +..+|+|+.
T Consensus 34 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~-------l~~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-------LLVGPSIET 103 (317)
T ss_dssp GGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-------EEECTTCCE
T ss_pred CCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-------ccCCCCcCE
Confidence 3566666654432 1222 23445566777777776554433 2456677777777 555543 223466666
Q ss_pred EEeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
|.+.+| ...+ .. .-..++|+.|.++++
T Consensus 104 L~l~~n-~l~~-~~--~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 104 LHAANN-NISR-VS--CSRGQGKKNIYLANN 130 (317)
T ss_dssp EECCSS-CCSE-EE--ECCCSSCEEEECCSS
T ss_pred EECCCC-ccCC-cC--ccccCCCCEEECCCC
Confidence 666666 4322 11 112345555555555
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.36 E-value=1.4e-08 Score=85.88 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=108.3
Q ss_pred CCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EECCCc
Q 038991 116 SCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-ISSSTL 193 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~~~~L 193 (287)
..++|+.|.++++....++ ....+++|+.|+| +..+.+-. .+..+++|+.|++.+| ...+ ...-. -..++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGN-QLQS-LPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCC-ccCc-cChhHhcCCcCC
Confidence 4577999999999877666 6778999999999 88776522 4678999999999999 6554 22211 135799
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG 270 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 270 (287)
+.|.+.++ .. .+......-..++|++|+++++..... .++.+++|+.+++..+... .. ....+..
T Consensus 112 ~~L~L~~n--~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~-----~~~~~~~ 179 (272)
T 3rfs_A 112 KELVLVEN--QL----QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SL-----PEGVFDK 179 (272)
T ss_dssp CEEECTTS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC-----CTTTTTT
T ss_pred CEEECCCC--cC----CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-cc-----CHHHhcC
Confidence 99999988 32 221111222468999999999876532 2578899999998755321 11 1245778
Q ss_pred CCcceEEEEecCeeE
Q 038991 271 ILNCKSLTLSSGVIL 285 (287)
Q Consensus 271 l~~v~~L~l~~~~i~ 285 (287)
+++++.|.++.|.|.
T Consensus 180 l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CccCCEEECCCCcCC
Confidence 999999999988763
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.35 E-value=5.6e-09 Score=94.43 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=75.5
Q ss_pred CCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE----E
Q 038991 116 SCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII----S 189 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i----~ 189 (287)
.+++|++|+|+++.+..++. ....+++|+.|+| +..+.. .....+..+++|+.|++.+| .. ...+.. .
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~l~~~-~~---l~~i~~~~~~~ 183 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IPSYAFNRIPSLRRLDLGEL-KR---LSYISEGAFEG 183 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCC-TT---CCEECTTTTTT
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc--cCHHHhhhCcccCEeCCCCC-CC---cceeCcchhhc
Confidence 34555555555555444332 2334555666655 443321 11123445566666666555 21 111111 2
Q ss_pred CCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHH
Q 038991 190 SSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQ 266 (287)
Q Consensus 190 ~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~ 266 (287)
.++|+.|.++++ .. .. . ......++|++|+++++.... ..+.++++|+++++..+.... ....
T Consensus 184 l~~L~~L~L~~n--~l----~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~ 249 (440)
T 3zyj_A 184 LSNLRYLNLAMC--NL----RE-I-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------IERN 249 (440)
T ss_dssp CSSCCEEECTTS--CC----SS-C-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTT
T ss_pred ccccCeecCCCC--cC----cc-c-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE------EChh
Confidence 345666666555 21 11 0 111234677777777765442 245567777777765332110 0124
Q ss_pred HHhcCCcceEEEEecCeeE
Q 038991 267 LLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 267 ~l~~l~~v~~L~l~~~~i~ 285 (287)
.+.++++++.|+++.|.|.
T Consensus 250 ~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp SSTTCTTCCEEECTTSCCC
T ss_pred hhcCCCCCCEEECCCCCCC
Confidence 4677888999998887654
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.35 E-value=9e-08 Score=89.91 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=81.3
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..++.|+|+.+. ...+|+ .+..+++|++|+|++|.+..+|.. ...+++|+.|+| +..+.+ .....+.++++|+
T Consensus 99 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~ 174 (597)
T 3oja_B 99 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQ 174 (597)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCC
T ss_pred CCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCc
Confidence 355555554433 122322 234455666666666655444422 245566666666 544432 1112244566666
Q ss_pred eEEeeeeeccCCCeeeEEEECCCcceEEEEEeecccc-c---------cccCC-cccEE-EEcCccEEEEEEecccc-ce
Q 038991 170 ELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYN-F---------AFNNF-HHNCL-IMAPLLQLLHVVDDLMV-SY 236 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~-~---------~~~~~-~~~~~-i~ap~L~~L~l~~~~~~-~~ 236 (287)
.|++.+| ...+ .. .-..++|+.|.+.++ ... + .+.+. ...+. ...++|+.|++.++... ..
T Consensus 175 ~L~L~~N-~l~~-~~--~~~l~~L~~L~l~~n--~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~ 248 (597)
T 3oja_B 175 NLQLSSN-RLTH-VD--LSLIPSLFHANVSYN--LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 248 (597)
T ss_dssp EEECTTS-CCSB-CC--GGGCTTCSEEECCSS--CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG
T ss_pred EEECcCC-CCCC-cC--hhhhhhhhhhhcccC--ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh
Confidence 6666665 3322 10 001233333333322 100 0 00000 00000 01246667776666544 23
Q ss_pred eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 237 EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 237 ~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.++.+++|+.+++..+.... .....+.++++++.|.++.|.|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECTTSCC
T ss_pred hhccCCCCCEEECCCCccCC------CCHHHhcCccCCCEEECCCCCC
Confidence 45677788877775432210 1124466788888888887765
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.34 E-value=3.4e-08 Score=93.54 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=74.0
Q ss_pred cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEE-C-------CCcceEEEEEeeccccccc
Q 038991 139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIIS-S-------STLKRFYWTVLVDDYNFAF 209 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~-~-------~~Lk~L~l~~~~~~~~~~~ 209 (287)
.+++|+.|+| +..+.. .-..++..+++|+.|++.+| .... +..-... . ++|+.|.++++ ..
T Consensus 431 ~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l---- 500 (636)
T 4eco_A 431 KGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGN-MLTE-IPKNSLKDENENFKNTYLLTSIDLRFN--KL---- 500 (636)
T ss_dssp CCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSS-CCSB-CCSSSSEETTEECTTGGGCCEEECCSS--CC----
T ss_pred cCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCC-CCCC-cCHHHhccccccccccCCccEEECcCC--cC----
Confidence 3446666666 554432 12345566788888888887 5433 2211111 1 17888888777 32
Q ss_pred cCCcccEEE--EcCccEEEEEEeccccc--eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 210 NNFHHNCLI--MAPLLQLLHVVDDLMVS--YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 210 ~~~~~~~~i--~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.. ...... ..|+|+.|+++++.... ..++++++|+.+++..+...........+...+..+++++.|+++.|.|
T Consensus 501 ~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 TK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CB-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred Cc-cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 11 111111 46788888888876542 3456788888888743210000000011224456778888888887765
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.33 E-value=3.6e-07 Score=84.10 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=47.0
Q ss_pred CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++|+++.+.. ..++ ..+..+++|++|+|+++.+... |.....+++|+.|+| +..+.+ +... .+++|+
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---EECC--CCCCCS
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee---cCcc--ccCCcc
Confidence 4555666544332 2222 2334455666666666655443 223345666666666 544332 1000 456666
Q ss_pred eEEeeeeeccCCCee--eEEEECCCcceEEEEEe
Q 038991 170 ELCLKVYLKYDGPAT--NFIISSSTLKRFYWTVL 201 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~--~l~i~~~~Lk~L~l~~~ 201 (287)
+|++++| ...+ .. ..--..++|+.|.++++
T Consensus 94 ~L~L~~N-~l~~-~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 94 HLDLSFN-AFDA-LPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp EEECCSS-CCSS-CCCCGGGGGCTTCCEEEEEES
T ss_pred EEeccCC-cccc-ccchhhhccCCcceEEEecCc
Confidence 6666666 4332 11 00113356666666665
No 65
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=6.5e-08 Score=75.99 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=64.5
Q ss_pred cccCCCCCcCCCcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcchHHHHHcc---CCccceEEeeeeeccC
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSS---CPSIEELCLKVYLKYD 180 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~---cp~Le~L~l~~c~~~~ 180 (287)
...+|......-.|++|++++|...+ +. ....|++|+.|+| +|...++.++..+... ||+||+|+|++|....
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 34566544455679999999997544 22 3358999999999 8876666888887763 7899999999993233
Q ss_pred CC-eeeEEEECCCcceEEEEEe
Q 038991 181 GP-ATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 181 ~~-~~~l~i~~~~Lk~L~l~~~ 201 (287)
+. +..+. .+++|++|.+.+|
T Consensus 129 D~Gl~~L~-~~~~L~~L~L~~c 149 (176)
T 3e4g_A 129 DKGIIALH-HFRNLKYLFLSDL 149 (176)
T ss_dssp HHHHHHGG-GCTTCCEEEEESC
T ss_pred HHHHHHHh-cCCCCCEEECCCC
Confidence 20 22222 4677888888777
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.32 E-value=9.6e-09 Score=96.43 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCcccEEEeceeecccc---CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 116 SCRSLEVLKLDYDFDIAV---PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
.+++|++|+++++.+... +.....+++|+.|++ +..+.+ .....+..+++|+.|++.+|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS--LKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE--ECTTTTTTCTTCSEEECTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc--CCHHHhcCCccCCeEECCCC
Confidence 344455555554433221 212334455555555 332211 11112344455555555544
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.32 E-value=3.2e-08 Score=82.57 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=95.7
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT 184 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 184 (287)
...+|..+. ++|+.|+|+++.+...+. ....+++|+.|+| +..+.+ .....+..+++|+.|++.++ ...+ ..
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~-~~ 99 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANN-QLAS-LP 99 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTS-CCCC-CC
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCC-cccc-cC
Confidence 345554433 578888888887665432 3456788888888 766543 12234567788888888888 5443 22
Q ss_pred eEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccC
Q 038991 185 NFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLN 260 (287)
Q Consensus 185 ~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~ 260 (287)
.-. -..++|+.|.++++ .. .+......-..++|+.|+++++....+ .++.+++|+.+++..+... ..
T Consensus 100 ~~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~-- 170 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGN--QL----KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV-- 170 (251)
T ss_dssp TTTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC--
T ss_pred hhHhcccCCCCEEEcCCC--cC----CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc--
Confidence 111 13467888888777 32 111111112357888888887765422 3566788888877644221 10
Q ss_pred hhhHHHHHhcCCcceEEEEecCee
Q 038991 261 PWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 261 ~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
....+..+++++.|.++.|.+
T Consensus 171 ---~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 ---PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---CTTTTTTCTTCCEEECCSCCB
T ss_pred ---CHHHHhCCCCCCEEEeeCCce
Confidence 123566778888888887765
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.32 E-value=5.5e-08 Score=83.99 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=97.6
Q ss_pred CCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 116 SCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
.+++|++|+|+++.+...+. ....+++|+.|+| +..+.+... +..+++|+.|++++| ...+ +. ..++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n-~l~~----l~-~~~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQE----LL-VGPSI 101 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSS-EEEE----EE-ECTTC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCC-cccc----cc-CCCCc
Confidence 45789999999998766542 3458999999999 776643222 788999999999999 6433 33 45899
Q ss_pred ceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccc---ceeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991 194 KRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMV---SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG 270 (287)
Q Consensus 194 k~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 270 (287)
+.|.++++ .. .+ ...-..++|++|+++++... ...++.+++|+.++++.+... ......+...
T Consensus 102 ~~L~l~~n--~l----~~---~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~~ 167 (317)
T 3o53_A 102 ETLHAANN--NI----SR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAELAAS 167 (317)
T ss_dssp CEEECCSS--CC----SE---EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-----EEEGGGGGGG
T ss_pred CEEECCCC--cc----CC---cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-----cccHHHHhhc
Confidence 99999988 32 11 11113578999998888655 235567788888877543211 1112234456
Q ss_pred CCcceEEEEecCee
Q 038991 271 ILNCKSLTLSSGVI 284 (287)
Q Consensus 271 l~~v~~L~l~~~~i 284 (287)
+++++.|+++.+.|
T Consensus 168 l~~L~~L~L~~N~l 181 (317)
T 3o53_A 168 SDTLEHLNLQYNFI 181 (317)
T ss_dssp TTTCCEEECTTSCC
T ss_pred cCcCCEEECCCCcC
Confidence 67777777776655
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.31 E-value=1.3e-08 Score=90.40 Aligned_cols=147 Identities=12% Similarity=0.125 Sum_probs=62.9
Q ss_pred CcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-EC
Q 038991 114 IYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SS 190 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~ 190 (287)
+..+++|++|+|+++.+...+.. ...+++|+.|+| +..+.. .-..++..+++|+.|++.+| ...+ ...-.+ ..
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l 164 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNN-NLER-IEDDTFQAT 164 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCB-CCTTTTSSC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCC-ccCc-cChhhccCC
Confidence 33445555555555544443212 234555555555 444332 11122344555555555555 3322 111001 23
Q ss_pred CCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEEEEEEEccccccChhhHHHHHhc
Q 038991 191 STLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNG 270 (287)
Q Consensus 191 ~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~ 270 (287)
++|+.|.++++ .. .+.. .-..|+|+.|++.++... .+...++|+++++..+....- + ...
T Consensus 165 ~~L~~L~l~~n--~l----~~~~---~~~l~~L~~L~l~~n~l~--~~~~~~~L~~L~l~~n~l~~~---~------~~~ 224 (390)
T 3o6n_A 165 TSLQNLQLSSN--RL----THVD---LSLIPSLFHANVSYNLLS--TLAIPIAVEELDASHNSINVV---R------GPV 224 (390)
T ss_dssp TTCCEEECCSS--CC----SBCC---GGGCTTCSEEECCSSCCS--EEECCSSCSEEECCSSCCCEE---E------CCC
T ss_pred CCCCEEECCCC--cC----Cccc---cccccccceeeccccccc--ccCCCCcceEEECCCCeeeec---c------ccc
Confidence 45555555554 21 1000 001255555555544332 122334555555432211100 0 012
Q ss_pred CCcceEEEEecCee
Q 038991 271 ILNCKSLTLSSGVI 284 (287)
Q Consensus 271 l~~v~~L~l~~~~i 284 (287)
.++++.|.++.+.|
T Consensus 225 ~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 225 NVELTILKLQHNNL 238 (390)
T ss_dssp CSSCCEEECCSSCC
T ss_pred cccccEEECCCCCC
Confidence 36788888887765
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.31 E-value=1.5e-08 Score=91.65 Aligned_cols=82 Identities=16% Similarity=0.023 Sum_probs=43.6
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccc-cCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIA-VPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
+++++|+++.+.. ....|..+..+++|++|+|++|.+.. .+. ....+++|+.|+| +..+.+ ..-..++.++++|
T Consensus 79 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L 156 (455)
T 3v47_A 79 SSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRF 156 (455)
T ss_dssp TTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTC
T ss_pred ccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcc
Confidence 4566666654332 11224445556667777776665532 110 1345667777777 555543 1112235666777
Q ss_pred ceEEeeee
Q 038991 169 EELCLKVY 176 (287)
Q Consensus 169 e~L~l~~c 176 (287)
+.|++.++
T Consensus 157 ~~L~L~~n 164 (455)
T 3v47_A 157 HVLDLTFN 164 (455)
T ss_dssp CEEECTTC
T ss_pred cEEeCCCC
Confidence 77777766
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.30 E-value=2.4e-07 Score=86.23 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=98.3
Q ss_pred cCCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe-eeEEEECC
Q 038991 115 YSCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA-TNFIISSS 191 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-~~l~i~~~ 191 (287)
..+++|++|+++++.+.. .|.....+++|+.|+| +..+.+-..+...+..+++|+.|++++| ...+.. .......+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcc
Confidence 355778888888887655 3435567888898888 7766542344455778899999999888 543201 11122457
Q ss_pred CcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeEEEEEEEccccccChhhHHHHHh
Q 038991 192 TLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLN 269 (287)
Q Consensus 192 ~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~ 269 (287)
+|+.|.++++ .. .+.... .+ .++|+.|+++++....+ .+..+++|+.+++..+... .. .. ..+.
T Consensus 429 ~L~~L~l~~n--~l----~~~~~~-~l-~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l-~~----~~~~ 494 (562)
T 3a79_B 429 SILVLNLSSN--ML----TGSVFR-CL-PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SV-PD----GVFD 494 (562)
T ss_dssp TCCEEECCSS--CC----CGGGGS-SC-CTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CC-CT----TSTT
T ss_pred cCCEEECCCC--CC----Ccchhh-hh-cCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CC-CH----HHHh
Confidence 8888888887 32 110000 01 16899999988865522 3447788888888654321 11 11 1477
Q ss_pred cCCcceEEEEecCee
Q 038991 270 GILNCKSLTLSSGVI 284 (287)
Q Consensus 270 ~l~~v~~L~l~~~~i 284 (287)
.+++++.|+++.|.+
T Consensus 495 ~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 495 RLTSLQYIWLHDNPW 509 (562)
T ss_dssp TCTTCCCEECCSCCB
T ss_pred cCCCCCEEEecCCCc
Confidence 888899999888765
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.30 E-value=2.3e-08 Score=85.46 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=26.9
Q ss_pred cCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 115 YSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 115 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
..+++|++|+|+++.+..++ ....+++|+.|+| +..+.. +...+.++|+|+.|+++++
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS---LPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS---CCCCTTTCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCccCccc-CCCCCCcCCEEECCCCcCCc---CchhhccCCCCCEEECCCC
Confidence 33455555555555444333 2244555555555 443321 1112344555555555555
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.28 E-value=9.9e-08 Score=86.79 Aligned_cols=162 Identities=13% Similarity=0.058 Sum_probs=82.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
+.+++|+++.+.. ..+| .+..+++|++|+|+++.+..++ ...+++|+.|+| +..+.+- . +..+++|+.|
T Consensus 42 ~~L~~L~Ls~n~l--~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~----~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D----VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCC--CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C----CTTCTTCCEE
T ss_pred CCCCEEEccCCCc--ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e----cCCCCcCCEE
Confidence 4666666654432 2233 3455566666666666554443 345666666666 5554431 1 4556666666
Q ss_pred EeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCC------------------cccEEE-EcCccEEEEEEec
Q 038991 172 CLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNF------------------HHNCLI-MAPLLQLLHVVDD 231 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~------------------~~~~~i-~ap~L~~L~l~~~ 231 (287)
++.+| ...+ +. + ..++|+.|.+.++ .. .+. ...+.+ ..++|+.|+++++
T Consensus 112 ~L~~N-~l~~-l~---~~~l~~L~~L~l~~N--~l----~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 112 NCDTN-KLTK-LD---VSQNPLLTYLNCARN--TL----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp ECCSS-CCSC-CC---CTTCTTCCEEECTTS--CC----SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred ECCCC-cCCe-ec---CCCCCcCCEEECCCC--cc----ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 66666 4433 21 2 2345555555544 11 110 000011 2356666666665
Q ss_pred cccceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 232 LMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 232 ~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
......++.+++|+.+++..+... . + -+..+++++.|+++.+.|
T Consensus 181 ~l~~l~l~~l~~L~~L~l~~N~l~-----~--~--~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 181 KITELDVSQNKLLNRLNCDTNNIT-----K--L--DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSCCS-----C--C--CCTTCTTCSEEECCSSCC
T ss_pred ccceeccccCCCCCEEECcCCcCC-----e--e--ccccCCCCCEEECcCCcc
Confidence 544444556666666665432111 0 0 156677788888877655
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.27 E-value=3.7e-08 Score=93.29 Aligned_cols=149 Identities=8% Similarity=0.035 Sum_probs=92.2
Q ss_pred CCceEEEEEEecCccc----------------cCCCCCc--CCCcccEEEeceeeccc-cCCCcccCCCccEEEE-EEE-
Q 038991 93 RDVRELELNIENQQRL----------------ELPESIY--SCRSLEVLKLDYDFDIA-VPVSGMCFPNLKFLRV-SLQ- 151 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L-~~~- 151 (287)
..+++|+++.+..... .+|..+. .+++|++|+|++|.+.. +|.....+++|+.|+| +..
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 5899999987653210 1888888 89999999999997654 5656678999999999 876
Q ss_pred eCC---cchHHHH--HccCCccceEEeeeeeccCCCeee--EEEECCCcceEEEEEeeccccccccCCcccEEEEcCccE
Q 038991 152 YPE---NQLTEKL--FSSCPSIEELCLKVYLKYDGPATN--FIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQ 224 (287)
Q Consensus 152 ~~~---~~~l~~l--~~~cp~Le~L~l~~c~~~~~~~~~--l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~ 224 (287)
+.+ ...+..+ +..+++|+.|++.+| .... +.. ..-..++|+.|.+.++ .. .|... ..-..++|+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~-ip~~~~l~~l~~L~~L~L~~N--~l----~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT-FPVETSLQKMKKLGMLECLYN--QL----EGKLP-AFGSEIKLA 356 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS-CCCHHHHTTCTTCCEEECCSC--CC----EEECC-CCEEEEEES
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCC-cCCc-cCchhhhccCCCCCEEeCcCC--cC----ccchh-hhCCCCCCC
Confidence 532 0122222 234688888888888 5543 332 1124467888877776 21 21111 222345666
Q ss_pred EEEEEeccccc--eeeecCCC-ceeEEEE
Q 038991 225 LLHVVDDLMVS--YEVHDLQF-LQTVNLA 250 (287)
Q Consensus 225 ~L~l~~~~~~~--~~~~~~p~-L~~~~l~ 250 (287)
.|+++++.... ..++.+++ |+.+++.
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred EEECCCCccccccHhhhhhcccCcEEEcc
Confidence 66666654331 12445555 6666554
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.26 E-value=5.3e-08 Score=90.19 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=38.0
Q ss_pred cCccEEEEEEeccccce------eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 220 APLLQLLHVVDDLMVSY------EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~~------~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
.++|++|+++++..... ....+++|+.+++....... .....+.+.++.+++++.|.++.+.+.
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD--ESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH--HHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccch--hHHHHHHHHhhhhcccccccccccccc
Confidence 46777777776654321 12345667776665432211 112345667788889999999887764
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=9e-08 Score=93.48 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=73.1
Q ss_pred CccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEE--------CCCcceEEEEEeeccccccccCC
Q 038991 142 NLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIIS--------SSTLKRFYWTVLVDDYNFAFNNF 212 (287)
Q Consensus 142 ~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~--------~~~Lk~L~l~~~~~~~~~~~~~~ 212 (287)
+|+.|+| +..+.. .-..++..+++|+.|+|++| .... +..-... +++|+.|.+++| .. ..
T Consensus 674 ~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N-~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L----~~- 742 (876)
T 4ecn_A 674 NASTVTLSYNEIQK--FPTELFATGSPISTIILSNN-LMTS-IPENSLKPKDGNYKNTYLLTTIDLRFN--KL----TS- 742 (876)
T ss_dssp CEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC-CCSC-CCTTSSSCTTSCCTTGGGCCEEECCSS--CC----CC-
T ss_pred CcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC-cCCc-cChHHhccccccccccCCccEEECCCC--CC----cc-
Confidence 5666666 554432 22345567888888888888 5433 2211111 127888888877 32 11
Q ss_pred cccEEE--EcCccEEEEEEeccccc--eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 213 HHNCLI--MAPLLQLLHVVDDLMVS--YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 213 ~~~~~i--~ap~L~~L~l~~~~~~~--~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
...... ..|+|+.|+++++.... ..++++++|+.++++.+...........+...+..+++++.|.++.|.|
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 111111 45788888888876542 3466788888888754320000000011234556777888888877765
No 77
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.26 E-value=4.3e-08 Score=76.47 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=48.5
Q ss_pred CcccEEEeceeecc--ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCc
Q 038991 118 RSLEVLKLDYDFDI--AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTL 193 (287)
Q Consensus 118 ~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~L 193 (287)
++|++|++++|.+. .+|.....+++|+.|+| +..+.+- ..+..+++|+.|++++| ...+ ...-.. ..++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSEN-RIFG-GLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESC-CCCS-CCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCC-cCch-HHHHHHhhCCCC
Confidence 66888888888776 55534467788888888 6665442 34566777777777777 5433 111111 24556
Q ss_pred ceEEEEEe
Q 038991 194 KRFYWTVL 201 (287)
Q Consensus 194 k~L~l~~~ 201 (287)
+.|.++++
T Consensus 98 ~~L~Ls~N 105 (168)
T 2ell_A 98 THLNLSGN 105 (168)
T ss_dssp CEEECBSS
T ss_pred CEEeccCC
Confidence 66655555
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.25 E-value=1.1e-08 Score=88.98 Aligned_cols=58 Identities=17% Similarity=0.042 Sum_probs=25.7
Q ss_pred cCccEEEEEEeccccce---eeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 220 APLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.++|+.|+++++..... .++.+++|+.+++..+... . +...+..+++++.|+++.|.|
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~------lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R------VPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B------CCTTGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e------cChhhhcCccCCEEECCCCCC
Confidence 35555555555543311 2445555555555432111 0 111244555555555555443
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.22 E-value=1.1e-08 Score=88.05 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=29.2
Q ss_pred CccEEEEEEeccccceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 221 PLLQLLHVVDDLMVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 221 p~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
|+|++|+++++....+.-.-.++|+.+++..+... . + ..+..+++++.|+++.|.|
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~-----~--~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN-----R--A-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCC-----S--C-CCTTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCC-----C--C-chhhhCCCccEEECcCCCC
Confidence 56666666665544222222356666665433211 0 0 1146667778888777654
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.21 E-value=2.3e-07 Score=79.72 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=100.7
Q ss_pred cCCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccc---c--CCCcccCCCccEEEE-EEEeCCcch-HHHHHc
Q 038991 92 MRDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIA---V--PVSGMCFPNLKFLRV-SLQYPENQL-TEKLFS 163 (287)
Q Consensus 92 ~~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~---~--~~~~~~~~~L~~L~L-~~~~~~~~~-l~~l~~ 163 (287)
.+++++|+++.+.. ..+ +..+..+++|++|+|+++.+.. . +.....+++|+.|+| +..+..-.. ...++.
T Consensus 144 ~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 46899999977654 333 3455577999999999997532 2 213358999999999 887754222 234578
Q ss_pred cCCccceEEeeeeeccCCCee--eEEE--ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc-eee
Q 038991 164 SCPSIEELCLKVYLKYDGPAT--NFII--SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS-YEV 238 (287)
Q Consensus 164 ~cp~Le~L~l~~c~~~~~~~~--~l~i--~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~-~~~ 238 (287)
.+++|++|+|+++ ...+ .. .+.- ..++|+.|.++++ ... .....+ .++|+.|+++++.... ..+
T Consensus 222 ~l~~L~~L~Ls~N-~l~~-~~p~~~~~~~~~~~L~~L~Ls~N--~l~----~lp~~~---~~~L~~L~Ls~N~l~~~~~~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHN-SLRA-TVNPSAPRCMWSSALNSLNLSFA--GLE----QVPKGL---PAKLRVLDLSSNRLNRAPQP 290 (310)
T ss_dssp HTCCCSSEECTTS-CCCC-CCCSCCSSCCCCTTCCCEECCSS--CCC----SCCSCC---CSCCSCEECCSCCCCSCCCT
T ss_pred cCCCCCEEECCCC-CCCc-cchhhHHhccCcCcCCEEECCCC--CCC----chhhhh---cCCCCEEECCCCcCCCCchh
Confidence 8999999999999 6654 31 1111 1279999999998 332 211112 2899999999997664 346
Q ss_pred ecCCCceeEEEE
Q 038991 239 HDLQFLQTVNLA 250 (287)
Q Consensus 239 ~~~p~L~~~~l~ 250 (287)
..+++|+.++++
T Consensus 291 ~~l~~L~~L~L~ 302 (310)
T 4glp_A 291 DELPEVDNLTLD 302 (310)
T ss_dssp TSCCCCSCEECS
T ss_pred hhCCCccEEECc
Confidence 788999988875
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.21 E-value=2.8e-07 Score=79.39 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=82.0
Q ss_pred CCceEEEEEEecCccccCCCCCcCC-----CcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHH-HH-Hc
Q 038991 93 RDVRELELNIENQQRLELPESIYSC-----RSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTE-KL-FS 163 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~-----~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~-~l-~~ 163 (287)
+.+++|+++.+... .+|..+... ++|++|+|+++.+...+ .....+++|+.|+| +..+.+...+. .+ +.
T Consensus 121 ~~L~~L~Ls~N~l~--~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCS--SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCc--chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 45666666554422 123322222 56666666666554433 23445666666666 55433211111 11 15
Q ss_pred cCCccceEEeeeeeccCCCeeeEE----EECCCcceEEEEEeeccccccccCCc-ccEEEEcCccEEEEEEeccccceee
Q 038991 164 SCPSIEELCLKVYLKYDGPATNFI----ISSSTLKRFYWTVLVDDYNFAFNNFH-HNCLIMAPLLQLLHVVDDLMVSYEV 238 (287)
Q Consensus 164 ~cp~Le~L~l~~c~~~~~~~~~l~----i~~~~Lk~L~l~~~~~~~~~~~~~~~-~~~~i~ap~L~~L~l~~~~~~~~~~ 238 (287)
.+++|+.|++.+| ...+ ...+. -..++|+.|.++++ .. .+.. .......++|+.|+++++....+.-
T Consensus 199 ~l~~L~~L~L~~N-~l~~-~~~~~~~~~~~l~~L~~L~Ls~N--~l----~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 199 KFPTLQVLALRNA-GMET-PSGVCSALAAARVQLQGLDLSHN--SL----RDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp SCTTCCEEECTTS-CCCC-HHHHHHHHHHTTCCCSEEECTTS--CC----CSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred cCCCCCEEECCCC-cCcc-hHHHHHHHHhcCCCCCEEECCCC--cC----CcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 5666666666666 4432 11111 12356666666665 22 1101 1111224667777766665432211
Q ss_pred ecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 239 HDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 239 ~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.-.++|+.+++..+... . +.. +..+++++.|+++.|.|
T Consensus 271 ~~~~~L~~L~Ls~N~l~-----~--~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 271 GLPAKLSVLDLSYNRLD-----R--NPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCSEEEEEECCSSCCC-----S--CCC-TTTSCEEEEEECTTCTT
T ss_pred hccCCceEEECCCCCCC-----C--Chh-HhhCCCCCEEeccCCCC
Confidence 11145666655433111 0 011 55667777777776654
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.20 E-value=2.4e-08 Score=84.38 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=49.9
Q ss_pred CceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 94 DVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.+++|+++.+.. ..++. .+..+++|++|+|+++.+...+. ....+++|+.|+| +..+.+ .....+.++++|+.
T Consensus 29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQK 104 (276)
T ss_dssp TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc--cChhhhcCCccccE
Confidence 566666543332 22222 34445666666666665544332 2345666666666 554432 11122455666666
Q ss_pred EEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991 171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~ 201 (287)
|++.++ ...+ .....+ ..++|+.|.+.++
T Consensus 105 L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 105 LVAVET-NLAS-LENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp EECTTS-CCCC-STTCCCTTCTTCCEEECCSS
T ss_pred EECCCC-Cccc-cCchhcccCCCCCEEECcCC
Confidence 666666 4333 222112 2356666666555
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.18 E-value=2.5e-08 Score=93.75 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=89.1
Q ss_pred CCceEEEEEEecCccccCC-CCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
+.++.|++..+.. ..++ ..+..+++|++|+|++|.+...+.. ...+++|+.|+| +..+.. ....++.++++|+
T Consensus 75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCC
Confidence 5677777654432 2333 3455567777777777766554422 356777777777 665542 1123356677777
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEE
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVN 248 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~ 248 (287)
.|++++| ...+ ...-.+ ..++|+.|.++++ .. .+.. .-..|+|+.|+++++... .+...++|+.++
T Consensus 151 ~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~~~---~~~l~~L~~L~l~~n~l~--~l~~~~~L~~L~ 217 (597)
T 3oja_B 151 TLSMSNN-NLER-IEDDTFQATTSLQNLQLSSN--RL----THVD---LSLIPSLFHANVSYNLLS--TLAIPIAVEELD 217 (597)
T ss_dssp EEECCSS-CCCB-CCTTTTTTCTTCCEEECTTS--CC----SBCC---GGGCTTCSEEECCSSCCS--EEECCTTCSEEE
T ss_pred EEEeeCC-cCCC-CChhhhhcCCcCcEEECcCC--CC----CCcC---hhhhhhhhhhhcccCccc--cccCCchhheee
Confidence 7777777 5433 211111 2456777777666 22 1100 012467777777666443 234455677666
Q ss_pred EEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 249 LAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
+..+....- .. ...++++.|.++.+.|
T Consensus 218 ls~n~l~~~-~~--------~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 218 ASHNSINVV-RG--------PVNVELTILKLQHNNL 244 (597)
T ss_dssp CCSSCCCEE-EC--------SCCSCCCEEECCSSCC
T ss_pred ccCCccccc-cc--------ccCCCCCEEECCCCCC
Confidence 543321100 00 1125788888887765
No 84
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.18 E-value=4.8e-08 Score=88.34 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=31.6
Q ss_pred cCccEEEEEEeccccc---eeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 220 APLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.++|++|+++++.... ..++++++|+.+++..+... . .....++.+++++.|+++.|.+
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-----~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S-----VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-C-----CCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccc-c-----CCHhHhccCCcccEEEccCCCc
Confidence 4566666666554431 23455566666665433211 0 0123456777777777777655
No 85
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.17 E-value=8.7e-07 Score=75.13 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCCCCchHHHHHHhcCCChhhhh-hhccchhhhHhh
Q 038991 3 RNSSLLDSVLCNILSFLTTKIDV-ATCILSSRWRHV 37 (287)
Q Consensus 3 ~is~LPd~vL~~Ils~L~~~~~~-~~s~vSkrW~~l 37 (287)
.++.||||+|.+||++||.++++ +++.|||+|+.+
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 57899999999999999999999 999999999986
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.16 E-value=1.2e-08 Score=87.12 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=95.9
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
..+++|+++.+.. ..++.. ..+++|++|+|+++.+..+|.....+++|+.|+| +..+..- ....+.++++|+.|
T Consensus 55 ~~L~~L~L~~n~l--~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 55 TRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQEL 129 (290)
T ss_dssp TTCCEEECTTSCC--CEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC--CSSTTTTCTTCCEE
T ss_pred CCCCEEECCCCcc--CcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc--CHHHHcCCCCCCEE
Confidence 5777777755442 223332 4567788888888877766655667888888888 6655431 11235677888888
Q ss_pred EeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce--eeecCCCceeEE
Q 038991 172 CLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY--EVHDLQFLQTVN 248 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~--~~~~~p~L~~~~ 248 (287)
.+.++ ...+ ...-. -..++|+.|.++++ .. .+......-..++|+.|+++++....+ .+...++|+.++
T Consensus 130 ~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 130 YLKGN-ELKT-LPPGLLTPTPKLEKLSLANN--NL----TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp ECTTS-CCCC-CCTTTTTTCTTCCEEECTTS--CC----SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred ECCCC-CCCc-cChhhcccccCCCEEECCCC--cC----CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence 88888 5443 22111 13467888888776 22 211111112357888888887765422 334556777777
Q ss_pred EEEEEccccccChhhHHHHHhcCC
Q 038991 249 LAILFLQWSVLNPWEVVQLLNGIL 272 (287)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~l~~l~ 272 (287)
+..+..... .....+.++++.-+
T Consensus 202 L~~Np~~C~-c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 202 LHGNPWLCN-CEILYFRRWLQDNA 224 (290)
T ss_dssp CCSCCBCCS-GGGHHHHHHHHHTG
T ss_pred eCCCCccCc-CccHHHHHHHHhCc
Confidence 765443211 22233555665543
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.15 E-value=2.3e-07 Score=84.36 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=89.7
Q ss_pred CcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECC
Q 038991 114 IYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSS 191 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~ 191 (287)
+..+++|++|+++++.+...| ....+++|+.|+| +..+.+- . +..+++|+.|++++| ...+ .. + ..+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~----~~~l~~L~~L~Ls~N-~l~~-~~---~~~l~ 106 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D----LSQNTNLTYLACDSN-KLTN-LD---VTPLT 106 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSS-CCSC-CC---CTTCT
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c----cccCCCCCEEECcCC-CCce-ee---cCCCC
Confidence 345688999999999887777 6778999999999 8877652 1 778999999999999 7765 43 3 457
Q ss_pred CcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEEEEEE
Q 038991 192 TLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVNLAIL 252 (287)
Q Consensus 192 ~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~l~~~ 252 (287)
+|+.|.++++ .. .+ . . .-..++|++|+++++......++.+++|+.+++..+
T Consensus 107 ~L~~L~L~~N--~l----~~-l-~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 107 KLTYLNCDTN--KL----TK-L-D-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158 (457)
T ss_dssp TCCEEECCSS--CC----SC-C-C-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred cCCEEECCCC--cC----Ce-e-c-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence 9999999988 32 22 1 1 124578888888887766556777777777776543
No 88
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=3.4e-08 Score=79.33 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=71.9
Q ss_pred CCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE
Q 038991 110 LPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII 188 (287)
Q Consensus 110 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i 188 (287)
+|..+..+++|++|+|+++.+..+| ....+++|+.|+| +..+.. +...+..+|+|+.|++++| ...+ ...+ .
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N-~l~~-l~~~-~ 112 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYN-QIAS-LSGI-E 112 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEE-ECCC-HHHH-H
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCC-cCCc-CCcc-c
Confidence 3335666788999999988877777 6778899999999 887763 3345556788999999988 6655 4321 1
Q ss_pred ECCCcceEEEEEeeccccccccCCccc--EEEEcCccEEEEEEeccc
Q 038991 189 SSSTLKRFYWTVLVDDYNFAFNNFHHN--CLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 189 ~~~~Lk~L~l~~~~~~~~~~~~~~~~~--~~i~ap~L~~L~l~~~~~ 233 (287)
..++|+.|.+.++ .. .+ ... ..-..|+|++|++.++..
T Consensus 113 ~l~~L~~L~l~~N--~i----~~-~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 113 KLVNLRVLYMSNN--KI----TN-WGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHSSEEEESEE--EC----CC-HHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCCCCEEECCCC--cC----Cc-hhHHHHHhcCCCCCEEEecCCcc
Confidence 3467777777777 22 11 011 111356677777766643
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.12 E-value=1.9e-06 Score=81.27 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=42.4
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
+++.|+++.+. ...+|..+. ++|++|+|++|.+..+| . .+++|+.|+| +..+.. +-...++|+.|+
T Consensus 41 ~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp-~--~l~~L~~L~Ls~N~l~~------lp~~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLP-A--LPPELRTLEVSGNQLTS------LPVLPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCC-C--CCTTCCEEEECSCCCSC------CCCCCTTCCEEE
T ss_pred CCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCC-C--cCCCCCEEEcCCCcCCc------CCCCCCCCCEEE
Confidence 45555554332 224444333 45666666666554444 1 4556666666 544432 111445555555
Q ss_pred eeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 173 LKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 173 l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
+++| ...+ +.. ..++|+.|.+.++
T Consensus 108 Ls~N-~l~~-l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 108 IFSN-PLTH-LPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp ECSC-CCCC-CCC---CCTTCCEEECCSS
T ss_pred CcCC-cCCC-CCC---CCCCcCEEECCCC
Confidence 5555 4333 222 2344444444444
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.12 E-value=1.4e-08 Score=90.13 Aligned_cols=185 Identities=14% Similarity=0.031 Sum_probs=120.4
Q ss_pred CCceEEEEEEecCcc---ccCCCCCcCCCcccEEEeceeecccc-----CCCcccC---------CCccEEEE-EEEeCC
Q 038991 93 RDVRELELNIENQQR---LELPESIYSCRSLEVLKLDYDFDIAV-----PVSGMCF---------PNLKFLRV-SLQYPE 154 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~---------~~L~~L~L-~~~~~~ 154 (287)
+++++|+|+.+.... ..+|..+..+++|++|+|++|.+... +.....+ ++|+.|+| +..+.+
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 689999997765431 23566667789999999999976431 1011123 99999999 888764
Q ss_pred cchHH---HHHccCCccceEEeeeeeccCCC-eeeE----EEECCCcceEEEEEeecccccccc--CCcccEEEEcCccE
Q 038991 155 NQLTE---KLFSSCPSIEELCLKVYLKYDGP-ATNF----IISSSTLKRFYWTVLVDDYNFAFN--NFHHNCLIMAPLLQ 224 (287)
Q Consensus 155 ~~~l~---~l~~~cp~Le~L~l~~c~~~~~~-~~~l----~i~~~~Lk~L~l~~~~~~~~~~~~--~~~~~~~i~ap~L~ 224 (287)
..+. ..+..+++|+.|.+.+| ...+. ...+ -...++|+.|.+++| ... .. .......-..|+|+
T Consensus 174 -~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~--~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 174 -GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFT--HLGSSALAIALKSWPNLR 247 (386)
T ss_dssp -GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCH--HHHHHHHHHHGGGCTTCC
T ss_pred -HHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC--CCC--cHHHHHHHHHHccCCCcC
Confidence 3333 56779999999999999 65420 1111 124689999999988 321 00 00111112468999
Q ss_pred EEEEEeccccce-------ee--ecCCCceeEEEEEEEccccccChhhHHHHH-hcCCcceEEEEecCeeE
Q 038991 225 LLHVVDDLMVSY-------EV--HDLQFLQTVNLAILFLQWSVLNPWEVVQLL-NGILNCKSLTLSSGVIL 285 (287)
Q Consensus 225 ~L~l~~~~~~~~-------~~--~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l-~~l~~v~~L~l~~~~i~ 285 (287)
+|+++++..... .+ +.+++|+.+++..+..... ....+...+ .++++++.|.++.|.|.
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~--g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH--HHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 999998875421 22 4489999999865432110 011345555 66899999999988763
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.11 E-value=6.5e-08 Score=92.04 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=15.9
Q ss_pred cCccEEEEEEeccccce---eeecCCCceeEEEE
Q 038991 220 APLLQLLHVVDDLMVSY---EVHDLQFLQTVNLA 250 (287)
Q Consensus 220 ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~ 250 (287)
.++|+.|+++++....+ .++++++|+.+++.
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 35566666655543311 24455566665553
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=7.5e-08 Score=94.04 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=66.9
Q ss_pred CCceEEEEEEecCccccCCC--CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCc-c
Q 038991 93 RDVRELELNIENQQRLELPE--SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPS-I 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~-L 168 (287)
+++++|+++.+... .+|. .+..+++|+.|+|+++.+..+| ....+++|+.|+| +..+.. +..-+..+++ |
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L 621 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE---IPEDFCAFTDQV 621 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSC---CCTTSCEECTTC
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcccc---chHHHhhccccC
Confidence 37888887665532 6777 6777788888888888776666 6667888888888 766542 2223666777 8
Q ss_pred ceEEeeeeeccCCCeeeEEE--ECCCcceEEEEEe
Q 038991 169 EELCLKVYLKYDGPATNFII--SSSTLKRFYWTVL 201 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~~l~i--~~~~Lk~L~l~~~ 201 (287)
+.|+|++| .... ++...- ..++|+.|.++++
T Consensus 622 ~~L~Ls~N-~L~~-lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 622 EGLGFSHN-KLKY-IPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CEEECCSS-CCCS-CCSCCCTTCSSCEEEEECCSS
T ss_pred CEEECcCC-CCCc-CchhhhccccCCCCEEECcCC
Confidence 88888888 5543 332111 1134777777776
No 93
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.10 E-value=5.7e-07 Score=75.63 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=32.7
Q ss_pred CCCCCchHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991 3 RNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHV 37 (287)
Q Consensus 3 ~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l 37 (287)
.|++||+||+++|||||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999974
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.08 E-value=6.4e-08 Score=84.04 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=97.8
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|++..+... ...|..+..+++|++|+|+++.+..+|.. .+++|+.|++ +..+.. .....+..+++|+.|
T Consensus 78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRK--VPKGVFSGLRNMNCI 152 (332)
T ss_dssp TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSS--CCTTCCEEECCSSCCCC--CCSGGGSSCSSCCEE
T ss_pred CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCcc--ccccCCEEECCCCccCc--cCHhHhCCCccCCEE
Confidence 45666666544321 11233445566777777777665555422 2267777777 655432 112235667777777
Q ss_pred EeeeeeccCCC-eeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeE
Q 038991 172 CLKVYLKYDGP-ATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTV 247 (287)
Q Consensus 172 ~l~~c~~~~~~-~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~ 247 (287)
++.++ ...+. ...-.....+|+.|.++++ .. .+....+ .++|++|+++++.... ..+..+++|+.+
T Consensus 153 ~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n--~l----~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 153 EMGGN-PLENSGFEPGAFDGLKLNYLRISEA--KL----TGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp ECCSC-CCBGGGSCTTSSCSCCCSCCBCCSS--BC----SSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred ECCCC-ccccCCCCcccccCCccCEEECcCC--CC----CccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 77777 43210 0001111126777777776 22 1101111 2789999998886552 346788899998
Q ss_pred EEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
++..+.... . ....+..+++++.|+++.+.|.
T Consensus 223 ~L~~N~l~~--~----~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 223 GLGHNQIRM--I----ENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp BCCSSCCCC--C----CTTGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCc--C----ChhHhhCCCCCCEEECCCCcCe
Confidence 886442211 1 1235678999999999988664
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.07 E-value=3.4e-08 Score=75.46 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCcccEEEeceeecc--ccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCc
Q 038991 117 CRSLEVLKLDYDFDI--AVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTL 193 (287)
Q Consensus 117 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~L 193 (287)
.++|+.|++++|.+. .+|.....+++|+.|++ +..+.+- ..+..+++|+.|++++| ...+......-..++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 367999999998876 46645567888888888 7766542 44677888888888888 5433011111124555
Q ss_pred ceEEEEEe
Q 038991 194 KRFYWTVL 201 (287)
Q Consensus 194 k~L~l~~~ 201 (287)
+.|.++++
T Consensus 91 ~~L~ls~N 98 (149)
T 2je0_A 91 THLNLSGN 98 (149)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 55555554
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.06 E-value=3.8e-06 Score=82.02 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=52.4
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++++|+++.+... ...+..+..+++|+.|+|+++.+... +.....+++|+.|+| +..+.+ .....+.++|+|+.
T Consensus 266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCE
T ss_pred CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCE
Confidence 35566665433221 11233344456677777766655443 223345666777776 554432 11123455666677
Q ss_pred EEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991 171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~ 201 (287)
|++.++ .... ...-.. ..++|+.|.++++
T Consensus 343 L~L~~N-~i~~-~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 343 IDLQKN-HIAI-IQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EECCSC-CCCC-CCSSCSCSCCCCCEEEEETC
T ss_pred EECCCC-CCCc-cChhhhcCCCCCCEEECCCC
Confidence 766666 4433 221111 2456666666666
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.05 E-value=2e-06 Score=84.02 Aligned_cols=179 Identities=15% Similarity=0.197 Sum_probs=110.7
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.+++.|++..+... ...|..+..+++|++|+|+++.+... +.....+++|+.|+| +..+..- ....+.++++|+.
T Consensus 290 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 290 KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII--QDQTFKFLEKLQT 366 (844)
T ss_dssp CCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC--CSSCSCSCCCCCE
T ss_pred CCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc--ChhhhcCCCCCCE
Confidence 58899998776542 23345566789999999999977654 335568999999999 7766431 1223577999999
Q ss_pred EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCc------------------ccEEEEcCccEEEEEEecc
Q 038991 171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFH------------------HNCLIMAPLLQLLHVVDDL 232 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~------------------~~~~i~ap~L~~L~l~~~~ 232 (287)
|+++++ ...+ +.. .++|+.|.+.++ ... .+.... ....-..|+|+.|+++++.
T Consensus 367 L~Ls~N-~l~~-i~~----~~~L~~L~l~~N--~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 367 LDLRDN-ALTT-IHF----IPSIPDIFLSGN--KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp EEEETC-CSCC-CSS----CCSCSEEEEESC--CCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred EECCCC-CCCc-ccC----CCCcchhccCCC--Ccc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 999999 6554 332 677888888776 221 000000 0000145777888887775
Q ss_pred cc----ceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 233 MV----SYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 233 ~~----~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
.. ...+..+++|+.++++.+..... .........++++++++.|+++.|.|
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLA-WETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSS-CCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred ccccccccccccCCccccccCCCCccccc-cccccchhhhcCcccccEEECCCCcc
Confidence 43 12234567777777765432100 00011124567788888888887654
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.04 E-value=2.7e-06 Score=80.15 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=55.5
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.+++.|+++.+.. ..+|. .+++|++|+|++|.+..+| . .+++|+.|+| +..+..- ....++|+.|
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~l~~l------~~~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLP-V--LPPGLLELSIFSNPLTHL------PALPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCC-C--CCTTCCEEEECSCCCCCC------CCCCTTCCEE
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCC-C--CCCCCCEEECcCCcCCCC------CCCCCCcCEE
Confidence 5778888766543 34554 3577888888888766666 2 6788888888 6655431 1145667777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
++.+| ...+ +.. ..++|+.|.+++|
T Consensus 127 ~L~~N-~l~~-lp~---~l~~L~~L~Ls~N 151 (622)
T 3g06_A 127 WIFGN-QLTS-LPV---LPPGLQELSVSDN 151 (622)
T ss_dssp ECCSS-CCSC-CCC---CCTTCCEEECCSS
T ss_pred ECCCC-CCCc-CCC---CCCCCCEEECcCC
Confidence 77666 4433 222 2366666666665
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.04 E-value=1.7e-07 Score=79.07 Aligned_cols=31 Identities=23% Similarity=0.110 Sum_probs=16.7
Q ss_pred ccEEEEEEeccccce---eeecCCCceeEEEEEE
Q 038991 222 LLQLLHVVDDLMVSY---EVHDLQFLQTVNLAIL 252 (287)
Q Consensus 222 ~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~ 252 (287)
+|++|+++++..... .++.+++|+.++++.+
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 566666666554311 2345666666665433
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.02 E-value=1.9e-08 Score=91.09 Aligned_cols=62 Identities=19% Similarity=-0.009 Sum_probs=30.7
Q ss_pred CccEEEEEEeccccc-------eeeecCCCceeEEEEEEEccccccChhhH-HHHHhcCCcceEEEEecCee
Q 038991 221 PLLQLLHVVDDLMVS-------YEVHDLQFLQTVNLAILFLQWSVLNPWEV-VQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 221 p~L~~L~l~~~~~~~-------~~~~~~p~L~~~~l~~~~~~~~~~~~~~~-~~~l~~l~~v~~L~l~~~~i 284 (287)
++|++|+++++.... ..+..+++|+++++..+.... .....+ ..+...+++++.|.++.+.|
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD--VGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh--HHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 467777776664331 123456677766664332100 000011 22333567777777776654
No 101
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.02 E-value=1e-06 Score=79.31 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhhhCC
Q 038991 1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHVCTS 40 (287)
Q Consensus 1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~lw~~ 40 (287)
+|.|+.||+|++.+||+|||.+++++++.|||+|+++...
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999987544
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.02 E-value=1.5e-05 Score=74.15 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=42.3
Q ss_pred CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++++|+++.+.. ..+ |..+..+++|++|+|+++.+..+|.. .+++|+.|+| +..+.+ -.....+..+++|+.
T Consensus 76 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 76 SELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTF 150 (562)
T ss_dssp TTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCE
T ss_pred CCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccc-cCchHhhcccCcccE
Confidence 4566666654432 222 33344556666666666665555522 5666666666 554432 111123555666666
Q ss_pred EEeeee
Q 038991 171 LCLKVY 176 (287)
Q Consensus 171 L~l~~c 176 (287)
|+++++
T Consensus 151 L~L~~n 156 (562)
T 3a79_B 151 LGLSAA 156 (562)
T ss_dssp EEEECS
T ss_pred EecCCC
Confidence 666666
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.01 E-value=3.6e-07 Score=76.81 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=26.3
Q ss_pred CcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 114 IYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+..+++|++|+|+++.+..++ .... ++|+.|+| +..+.+-. -+..+++|+.|+++++
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~-~~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLN-GIPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNN 138 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCT-TCCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTS
T ss_pred hccCCCCCEEECCCCccCCcC-cccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCC
Confidence 334455555555555444433 1112 55555555 44443211 1444555555555555
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.99 E-value=2e-06 Score=80.26 Aligned_cols=98 Identities=8% Similarity=-0.058 Sum_probs=45.2
Q ss_pred cCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCC
Q 038991 164 SCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQF 243 (287)
Q Consensus 164 ~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~ 243 (287)
.+++|+.|+++++ ...+ +.. ..++|+.|.++++ .. .+ ... +. ++|+.|+++++....+.- -.++
T Consensus 138 ~l~~L~~L~Ls~N-~l~~-lp~---~l~~L~~L~Ls~N--~L----~~-lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~~ 201 (571)
T 3cvr_A 138 LPALLEYINADNN-QLTM-LPE---LPTSLEVLSVRNN--QL----TF-LPE--LP-ESLEALDVSTNLLESLPA-VPVR 201 (571)
T ss_dssp CCTTCCEEECCSS-CCSC-CCC---CCTTCCEEECCSS--CC----SC-CCC--CC-TTCCEEECCSSCCSSCCC-CC--
T ss_pred cCccccEEeCCCC-ccCc-CCC---cCCCcCEEECCCC--CC----CC-cch--hh-CCCCEEECcCCCCCchhh-HHHh
Confidence 4556666666666 4443 332 3456666666665 21 22 111 21 666666666664431111 0013
Q ss_pred c-------eeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 244 L-------QTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 244 L-------~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
| +.++++.+... .+..-+..+++++.|.++.|.|
T Consensus 202 L~~~~~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSC
T ss_pred hhcccccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcC
Confidence 4 44444322111 1112233477777777777765
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.99 E-value=6.1e-09 Score=94.37 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=80.9
Q ss_pred CcCCCcccEEEeceeecccc------CCCcccCCCccEEEE-EEEeCCcch---HHHHHccCCccceEEeeeeeccCCCe
Q 038991 114 IYSCRSLEVLKLDYDFDIAV------PVSGMCFPNLKFLRV-SLQYPENQL---TEKLFSSCPSIEELCLKVYLKYDGPA 183 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L-~~~~~~~~~---l~~l~~~cp~Le~L~l~~c~~~~~~~ 183 (287)
+..+++|++|++++|.+.+. +.....+++|+.|+| ++.+.+ .+ +...+..||+|+.|++++| ...+ .
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~-~ 299 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGN-ELGD-E 299 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHHHHHHHHHHHCTTCCEEECTTC-CCHH-H
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH-HHHHHHHHHHhhCCCcceEECCCC-CCch-H
Confidence 33456666666666644321 100113666777777 665543 22 3444556777777777766 4322 1
Q ss_pred eeEEE------ECCCcceEEEEEeeccccccccCC--cccEEEEcCccEEEEEEeccccce---eee-----cCCCceeE
Q 038991 184 TNFII------SSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQLLHVVDDLMVSY---EVH-----DLQFLQTV 247 (287)
Q Consensus 184 ~~l~i------~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~L~l~~~~~~~~---~~~-----~~p~L~~~ 247 (287)
....+ ..++|+.|.+.+| ... ..+. .....-..|+|++|+++++..... .+. ..++|+++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n--~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSC--SFT--AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS--CCB--GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHhccCCccceeeEcCCC--CCc--hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 10001 1146777777766 221 0000 000111237777777777654311 111 15677777
Q ss_pred EEEEEEccccccChhhHHHHHhcCCcceEEEEecCee
Q 038991 248 NLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i 284 (287)
++..+.... .....+...+..+++++.|+++.|.|
T Consensus 376 ~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 376 WLADCDVSD--SSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp ECTTSCCCH--HHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred ECCCCCCCh--hhHHHHHHHHHhCCCccEEECCCCCC
Confidence 765432110 01124566677788888888887765
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.99 E-value=6.7e-07 Score=72.16 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=25.5
Q ss_pred cccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 119 SLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 119 ~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+|++|+++++.+...+.. ...+++|+.|+| +..+.. .....+..+++|+.|++.++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCCC
Confidence 455555555544433321 234555555555 443322 11122344555555555555
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.97 E-value=2.9e-07 Score=74.31 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=88.3
Q ss_pred CCceEEEEEEecCccccCCCC-CcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPES-IYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++|+++.+.. ..++.. +..+++|++|+++++.+..++.. ...+++|+.|+| +..+.. .....+..+++|+
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCC
Confidence 4788888866543 344443 44678999999999877666533 357899999999 776653 1223467889999
Q ss_pred eEEeeeeeccCCCeeeEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceeeecCCCceeEE
Q 038991 170 ELCLKVYLKYDGPATNFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEVHDLQFLQTVN 248 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~~~~p~L~~~~ 248 (287)
.|++.++ ...+ ...-. -..++|+.|.+.++ .. .+......-..++|+.|++.++.. .+.+|+|+.+.
T Consensus 104 ~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N--~l----~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~L~ 171 (208)
T 2o6s_A 104 ELALNTN-QLQS-LPDGVFDKLTQLKDLRLYQN--QL----KSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLS 171 (208)
T ss_dssp EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----SCCCTTTTTTCTTCCEEECCSCCB----CCCTTTTHHHH
T ss_pred EEEcCCC-cCcc-cCHhHhccCCcCCEEECCCC--cc----ceeCHHHhccCCCccEEEecCCCe----ecCCCCHHHHH
Confidence 9999998 6544 22111 13467888888777 32 111111122357888888877743 23455565554
Q ss_pred E
Q 038991 249 L 249 (287)
Q Consensus 249 l 249 (287)
+
T Consensus 172 ~ 172 (208)
T 2o6s_A 172 E 172 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=3e-06 Score=74.53 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=10.0
Q ss_pred HhcCCcceEEEEecCee
Q 038991 268 LNGILNCKSLTLSSGVI 284 (287)
Q Consensus 268 l~~l~~v~~L~l~~~~i 284 (287)
++.+++++.|+++.|.|
T Consensus 303 L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHTTCSEEECCSBBC
T ss_pred cccCCcceEEECCCCcC
Confidence 34566666666665543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.95 E-value=5.1e-07 Score=73.79 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=69.8
Q ss_pred ccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991 108 LELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN 185 (287)
Q Consensus 108 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~ 185 (287)
..+|..+. ++|+.|+|+++.+..++. ....+++|+.|+| +..+.. .....+.++++|+.|+|+++ .... +..
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N-~l~~-l~~ 97 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGN-KITE-LPK 97 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--ECTTTTTTCSSCCEEECCSS-CCCC-CCT
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--cCHHHhhCCcCCCEEECCCC-cCCc-cCH
Confidence 34444332 567777777766555432 3345677777777 554432 11223556677777777777 4433 211
Q ss_pred EE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEE
Q 038991 186 FI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAIL 252 (287)
Q Consensus 186 l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~ 252 (287)
-. -..++|+.|.++++ .. .+......-..++|+.|+++++..... .+..+++|+.+++..+
T Consensus 98 ~~f~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNAN--KI----NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTCTTCCEEECCSS--CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHccCCCCCCEEECCCC--CC----CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 11 12456777777666 22 110111111346777777777655422 2456677777666544
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.95 E-value=5.3e-07 Score=74.12 Aligned_cols=133 Identities=18% Similarity=0.092 Sum_probs=78.3
Q ss_pred cccCCCCCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT 184 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 184 (287)
...+|..+. ++|++|+|+++.+... +.....+++|+.|+| +..+.. .-...+.++++|+.|+|+++ ...+ +.
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N-~l~~-l~ 104 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTN-QLTV-LP 104 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CC
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCC-cCCc-cC
Confidence 344554332 6688888888776554 323456788888888 665532 11234567788888888887 5543 22
Q ss_pred eEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---eeecCCCceeEEEEEE
Q 038991 185 NFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EVHDLQFLQTVNLAIL 252 (287)
Q Consensus 185 ~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~~~~p~L~~~~l~~~ 252 (287)
.-. -..++|+.|.++++ ... . .....-..++|+.|+++++....+ .+..+++|+.+++..+
T Consensus 105 ~~~~~~l~~L~~L~Ls~N--~l~----~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCN--KLT----E-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTTTTCTTCCEEECCSS--CCC----S-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hhHhCcchhhCeEeccCC--ccc----c-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 111 13467777777776 321 1 111113457888888887765422 3566778887776544
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.95 E-value=5e-08 Score=85.86 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=114.4
Q ss_pred CCceEEEEEEecCcccc---CCCCCcCCC-cccEEEeceeeccccCC-Cccc-----CCCccEEEE-EEEeCCc--chHH
Q 038991 93 RDVRELELNIENQQRLE---LPESIYSCR-SLEVLKLDYDFDIAVPV-SGMC-----FPNLKFLRV-SLQYPEN--QLTE 159 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~---l~~~~~~~~-~L~~L~L~~~~~~~~~~-~~~~-----~~~L~~L~L-~~~~~~~--~~l~ 159 (287)
+++++|+++.+...... +...+..++ +|++|+|++|.+.+... .... +++|+.|+| ++.+.+. ..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46999998766532111 112334456 89999999997755321 1222 399999999 8887642 2355
Q ss_pred HHHccC-CccceEEeeeeeccCCCeeeEEE----E--CCCcceEEEEEeeccccccccCCcccE---EEEc-CccEEEEE
Q 038991 160 KLFSSC-PSIEELCLKVYLKYDGPATNFII----S--SSTLKRFYWTVLVDDYNFAFNNFHHNC---LIMA-PLLQLLHV 228 (287)
Q Consensus 160 ~l~~~c-p~Le~L~l~~c~~~~~~~~~l~i----~--~~~Lk~L~l~~~~~~~~~~~~~~~~~~---~i~a-p~L~~L~l 228 (287)
..+..+ ++|+.|++++| ...+ ...-.+ . .++|+.|.+++| ... ..+ ...+ .-.. ++|++|++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~--~~~-~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWN-DFSS-KSSSEFKQAFSNLPASITSLNLRGN--DLG--IKS-SDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHTSCTTCCEEECCSS-CGGG-SCHHHHHHHHTTSCTTCCEEECTTS--CGG--GSC-HHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHhCCCCccEEECcCC-cCCc-HHHHHHHHHHHhCCCceeEEEccCC--cCC--HHH-HHHHHHHHhcCCccccEeee
Confidence 667777 89999999999 6644 221111 1 359999999998 332 011 0011 0123 49999999
Q ss_pred Eeccccce-------eeecC-CCceeEEEEEEEccccccChhhHHHHHhcC-CcceEEEEecCeeE
Q 038991 229 VDDLMVSY-------EVHDL-QFLQTVNLAILFLQWSVLNPWEVVQLLNGI-LNCKSLTLSSGVIL 285 (287)
Q Consensus 229 ~~~~~~~~-------~~~~~-p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~i~ 285 (287)
+++..... .+... ++|+.++++.+... ......+...+... ++++.|+++.|.|.
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLG--LKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG--GSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC--hhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 98865411 23445 48999998654321 11223466666664 59999999998764
No 112
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.94 E-value=5.6e-07 Score=74.27 Aligned_cols=165 Identities=10% Similarity=0.100 Sum_probs=105.9
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEece-eeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDY-DFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
.+++.|++..+.. ...++. .+..+++|++|++++ +.+..++. ....+++|+.|++ +..+..-. . +..+++|
T Consensus 55 ~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp---~-~~~l~~L 129 (239)
T 2xwt_C 55 PNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP---D-LTKVYST 129 (239)
T ss_dssp TTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC---C-CTTCCBC
T ss_pred CCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc---c-ccccccc
Confidence 5899999987641 234444 455679999999998 66655542 4458999999999 88776522 2 6788899
Q ss_pred c---eEEeeeeeccCCCeeeEEE----ECCCcc-eEEEEEeeccccccccCCcccEEEEcCccEEEEEEecc-ccc---e
Q 038991 169 E---ELCLKVYLKYDGPATNFII----SSSTLK-RFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDL-MVS---Y 236 (287)
Q Consensus 169 e---~L~l~~c~~~~~~~~~l~i----~~~~Lk-~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~-~~~---~ 236 (287)
+ .|++.++ .. +..+.. ..++|+ .|.+.++ ... .+. ......++|++|++.++. ... .
T Consensus 130 ~~L~~L~l~~N-~~---l~~i~~~~~~~l~~L~~~L~l~~n--~l~-~i~----~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 130 DIFFILEITDN-PY---MTSIPVNAFQGLCNETLTLKLYNN--GFT-SVQ----GYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp CSEEEEEEESC-TT---CCEECTTTTTTTBSSEEEEECCSC--CCC-EEC----TTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred ccccEEECCCC-cc---hhhcCcccccchhcceeEEEcCCC--CCc-ccC----HhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 8 9999887 21 222221 246788 8888776 321 111 111122689999999884 442 3
Q ss_pred eeecC-CCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecC
Q 038991 237 EVHDL-QFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSG 282 (287)
Q Consensus 237 ~~~~~-p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 282 (287)
.+.++ ++|+.+++...... .. .. ..+++++.|.++.+
T Consensus 199 ~~~~l~~~L~~L~l~~N~l~-~l-~~-------~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTSVT-AL-PS-------KGLEHLKELIARNT 236 (239)
T ss_dssp TTTTCSBCCSEEECTTCCCC-CC-CC-------TTCTTCSEEECTTC
T ss_pred HhhccccCCcEEECCCCccc-cC-Ch-------hHhccCceeeccCc
Confidence 45677 89999988643221 11 11 16788999888753
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.94 E-value=5.5e-08 Score=85.60 Aligned_cols=184 Identities=13% Similarity=0.068 Sum_probs=109.0
Q ss_pred CCceEEEEEEecCcc---ccCCCCCcCC-CcccEEEeceeeccccCCCc-----cc-CCCccEEEE-EEEeCCcc--hHH
Q 038991 93 RDVRELELNIENQQR---LELPESIYSC-RSLEVLKLDYDFDIAVPVSG-----MC-FPNLKFLRV-SLQYPENQ--LTE 159 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~-----~~-~~~L~~L~L-~~~~~~~~--~l~ 159 (287)
..+++|+++.+.... ..+...+..+ ++|++|+|++|.+.+.+... .. .++|+.|+| +..+.+.. .+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 688988887665321 1111112333 68999999988775543111 12 358999999 87776422 344
Q ss_pred HHHccCC-ccceEEeeeeeccCCCeeeEEE-----EC-CCcceEEEEEeeccccccccCCcccE--EE-E-cCccEEEEE
Q 038991 160 KLFSSCP-SIEELCLKVYLKYDGPATNFII-----SS-STLKRFYWTVLVDDYNFAFNNFHHNC--LI-M-APLLQLLHV 228 (287)
Q Consensus 160 ~l~~~cp-~Le~L~l~~c~~~~~~~~~l~i-----~~-~~Lk~L~l~~~~~~~~~~~~~~~~~~--~i-~-ap~L~~L~l 228 (287)
..+..+| +|+.|++++| ...+ .....+ .. ++|+.|+++++ ... ..+ ...+ .+ . .++|++|++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n-~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~--~~~-~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGN-NLAS-KNCAELAKFLASIPASVTSLDLSAN--LLG--LKS-YAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGG-SCHHHHHHHHHTSCTTCCEEECTTS--CGG--GSC-HHHHHHHHHHSCTTCCEEEC
T ss_pred HHHhcCCccccEeeecCC-CCch-hhHHHHHHHHHhCCCCCCEEECCCC--CCC--hhH-HHHHHHHHhcCCCCceEEEC
Confidence 5556666 8999999999 6543 221111 23 48999999888 332 011 0000 11 1 358999999
Q ss_pred Eeccccce-------eeecCCCceeEEEEEEEccccccChh---hHHHHHhcCCcceEEEEecCeeE
Q 038991 229 VDDLMVSY-------EVHDLQFLQTVNLAILFLQWSVLNPW---EVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 229 ~~~~~~~~-------~~~~~p~L~~~~l~~~~~~~~~~~~~---~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
+++..... .+..+++|+.++++.+... ..... .+...+..+++++.|+++.|.|.
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~--~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK--NMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT--TCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc--ccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 98875422 2356788999988765311 11122 23444556677888888887764
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.93 E-value=5.8e-06 Score=77.10 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=108.1
Q ss_pred cCCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 92 MRDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 92 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++++.|+++.+.. ..+|..++ ++|++|+|+++.+..+| ..+++|+.|+| +..+.. +.. +. .+|+.
T Consensus 58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~---ip~-l~--~~L~~ 124 (571)
T 3cvr_A 58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST---LPE-LP--ASLKH 124 (571)
T ss_dssp HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC---CCC-CC--TTCCE
T ss_pred cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC---cch-hh--cCCCE
Confidence 35899999876543 34776554 78999999999887776 56899999999 876654 222 22 29999
Q ss_pred EEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEecccccee-eecCCCceeEEE
Q 038991 171 LCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYE-VHDLQFLQTVNL 249 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~-~~~~p~L~~~~l 249 (287)
|+++++ ...+ +.. ..++|+.|.++++ .. .+ ... ..++|+.|+++++....+. +. ++|+.+++
T Consensus 125 L~Ls~N-~l~~-lp~---~l~~L~~L~Ls~N--~l----~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~L 187 (571)
T 3cvr_A 125 LDVDNN-QLTM-LPE---LPALLEYINADNN--QL----TM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDV 187 (571)
T ss_dssp EECCSS-CCSC-CCC---CCTTCCEEECCSS--CC----SC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEEC
T ss_pred EECCCC-cCCC-CCC---cCccccEEeCCCC--cc----Cc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEEC
Confidence 999999 7766 555 5789999999998 32 32 122 4689999999998755221 32 78999888
Q ss_pred EEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 250 AILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
..+... ..... ..++......++.|+++.|.|.
T Consensus 188 s~N~L~-~lp~~--~~~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 188 STNLLE-SLPAV--PVRNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp CSSCCS-SCCCC--C--------CCEEEECCSSCCC
T ss_pred cCCCCC-chhhH--HHhhhcccccceEEecCCCcce
Confidence 755322 11110 0122233334499999998764
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.93 E-value=5.1e-07 Score=74.22 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=89.2
Q ss_pred CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
.+++.|+++.+.. ..+ |..+..+++|++|+|+++.+..++.. ...+++|+.|+| +..+.. .....+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcchhhC
Confidence 6889999876553 333 45566779999999999988766533 358999999999 776653 1233467899999
Q ss_pred eEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991 170 ELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 233 (287)
.|++.++ .... +..-.-..++|+.|.++++ .. .+......-..++|+.|++.++..
T Consensus 116 ~L~Ls~N-~l~~-lp~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 116 ELFMCCN-KLTE-LPRGIERLTHLTHLALDQN--QL----KSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EEECCSS-CCCS-CCTTGGGCTTCSEEECCSS--CC----CCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eEeccCC-cccc-cCcccccCCCCCEEECCCC--cC----CccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999 6544 3211124579999999888 32 221111222458999999988764
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.89 E-value=2.5e-07 Score=72.81 Aligned_cols=123 Identities=8% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CCCcccEEEeceeeccccCCCccc-CCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeE-EEECCC
Q 038991 116 SCRSLEVLKLDYDFDIAVPVSGMC-FPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNF-IISSST 192 (287)
Q Consensus 116 ~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l-~i~~~~ 192 (287)
.+.+|+.|.++++.+..++ .... +|+|+.|+| +..+.+ + .-+..+++|+.|++++| ...+ ...- .-..++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~---~-~~l~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK---L-DGFPLLRRLKTLLVNNN-RICR-IGEGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE---E-CCCCCCSSCCEEECCSS-CCCE-ECSCHHHHCTT
T ss_pred CcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc---c-cccccCCCCCEEECCCC-cccc-cCcchhhcCCC
Confidence 4455666666666555444 2223 336666666 554432 1 22455666666666666 4332 1110 013455
Q ss_pred cceEEEEEeeccccccccCCccc--EEEEcCccEEEEEEeccccc---e---eeecCCCceeEEEEEE
Q 038991 193 LKRFYWTVLVDDYNFAFNNFHHN--CLIMAPLLQLLHVVDDLMVS---Y---EVHDLQFLQTVNLAIL 252 (287)
Q Consensus 193 Lk~L~l~~~~~~~~~~~~~~~~~--~~i~ap~L~~L~l~~~~~~~---~---~~~~~p~L~~~~l~~~ 252 (287)
|+.|.++++ ... . ... ..-..|+|+.|++.++.... + .++.+|+|+.+++...
T Consensus 90 L~~L~L~~N--~i~----~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNN--SLV----E-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSC--CCC----C-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCC--cCC----c-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666665555 211 1 000 11134666666666655431 1 2455666666655433
No 117
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.87 E-value=1.3e-06 Score=83.06 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=90.0
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
.++++|+++.+.. ..++. .+..+++|++|+|+++.+... |.....+++|+.|+| +..+.. .-...+.+|++|+
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCC
Confidence 4667777655432 23333 345567777777777765543 223346777777777 655442 1112355677777
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-----eeecCCC
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-----EVHDLQF 243 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-----~~~~~p~ 243 (287)
.|++.+| ...+ ...-.+ ..++|+.|+++++ .. .+......-..++|++|++.++..... ....+++
T Consensus 101 ~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n--~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 101 ELHLMSN-SIQK-IKNNPFVKQKNLITLDLSHN--GL----SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp EEECCSS-CCCC-CCSCTTTTCTTCCEEECCSS--CC----SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred EEECCCC-ccCc-cChhHccccCCCCEEECCCC--cc----cccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 7777777 5433 221111 3457777777766 22 110111112456777777776643311 1224466
Q ss_pred ceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCe
Q 038991 244 LQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGV 283 (287)
Q Consensus 244 L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 283 (287)
|+.+++..+... .. ....+..+.+++.|.++.+.
T Consensus 173 L~~L~L~~n~l~-~~-----~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 173 LKKLELSSNQIK-EF-----SPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp ESEEECTTCCCC-CB-----CTTGGGGSSEECEEECTTCC
T ss_pred ccEEECCCCccc-cc-----Chhhhhhhhhhhhhhccccc
Confidence 777666433111 00 12345566777777765543
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.87 E-value=6.2e-07 Score=73.27 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=51.3
Q ss_pred ccEEEeceeeccccCC--CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcce
Q 038991 120 LEVLKLDYDFDIAVPV--SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKR 195 (287)
Q Consensus 120 L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~ 195 (287)
+++|.|+++.+...+. ....+++|+.|+| +..+.+ .....+.++++|+.|+|+++ ...+ ...-.+ ..++|+.
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSN-RLEN-VQHKMFKGLESLKT 109 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCC-CCGGGGTTCSSCCE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECCCC-ccCc-cCHhHhcCCcCCCE
Confidence 4555555554433311 1234555555555 433321 01112344555555555555 3322 111001 2345555
Q ss_pred EEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEE
Q 038991 196 FYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAIL 252 (287)
Q Consensus 196 L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~ 252 (287)
|.++++ .. .+.........++|+.|+++++.... ..+..+++|+.+++..+
T Consensus 110 L~Ls~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 110 LMLRSN--RI----TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EECTTS--CC----CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EECCCC--cC----CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 555554 11 11000111134566666665554331 23445566666655433
No 119
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.83 E-value=8.1e-06 Score=73.13 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCCCCCCchHHHHHHhcCCChhhhhhhccchhhhHhh
Q 038991 1 QDRNSSLLDSVLCNILSFLTTKIDVATCILSSRWRHV 37 (287)
Q Consensus 1 ~D~is~LPd~vL~~Ils~L~~~~~~~~s~vSkrW~~l 37 (287)
.|.++.||+|++.+||+||+.+++++++.|||+|+++
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 4889999999999999999999999999999999974
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4.4e-06 Score=65.50 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=61.5
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC--Ccc----cCCCccEEEE-EEEeCCcchHHHHHccCC
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV--SGM----CFPNLKFLRV-SLQYPENQLTEKLFSSCP 166 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~----~~~~L~~L~L-~~~~~~~~~l~~l~~~cp 166 (287)
.+++|+++.+...+..+.. +..|++|++|+|++|...+... ... .+++|+.|+| +|.-.++.++..+ +.||
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 6999999988765555543 4689999999999996543110 111 2568999999 9975566788775 6799
Q ss_pred ccceEEeeee
Q 038991 167 SIEELCLKVY 176 (287)
Q Consensus 167 ~Le~L~l~~c 176 (287)
+|+.|+|.+|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 9999999999
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.81 E-value=2.4e-07 Score=74.27 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=90.2
Q ss_pred CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceEEEEEeeccccccccCCcc
Q 038991 136 SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRFYWTVLVDDYNFAFNNFHH 214 (287)
Q Consensus 136 ~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~~~~~~~~~~~~~~ 214 (287)
....+++|+.|+| +..+.+ +. .+..+++|+.|++.+| .... +....-..++|+.|.++++ .. .+ ..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n-~l~~-l~~~~~~~~~L~~L~L~~N--~l----~~-l~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRN-LIKK-IENLDAVADTLEELWISYN--QI----AS-LS 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEE-EECS-CSSHHHHHHHCSEEEEEEE--EC----CC-HH
T ss_pred HHhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCC-Cccc-ccchhhcCCcCCEEECcCC--cC----Cc-CC
Confidence 3458999999999 988876 22 4667899999999999 6654 4432223479999999999 32 22 11
Q ss_pred cEEEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEEEccccccC----hhhHHHHHhcCCcceEEEE
Q 038991 215 NCLIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAILFLQWSVLN----PWEVVQLLNGILNCKSLTL 279 (287)
Q Consensus 215 ~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~~~~~~~~~----~~~~~~~l~~l~~v~~L~l 279 (287)
..-..++|+.|++.++.... ..+..+++|+.+++..+........ .......+..+++++.|+-
T Consensus 110 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred -ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 12246899999999987652 2467899999999875532111000 2234566899999999873
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.80 E-value=1.1e-06 Score=71.74 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++|++..+.. ..++. .+..+++|++|+|+++.+..+ +.....+++|+.|+| +..+.. .-..++.++++|+
T Consensus 32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCC
Confidence 4788888866543 34444 455678999999999877664 435668899999999 776653 1223467889999
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 233 (287)
.|+|.++ ...+ ...-.+ ..++|+.|.+.++ .. .+......-..++|+.|++.++..
T Consensus 108 ~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 108 LLLLNAN-KINC-LRVDAFQDLHNLNLLSLYDN--KL----QTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS--CC----SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCC-CCCE-eCHHHcCCCCCCCEEECCCC--cC----CEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999 6544 221111 3578999999888 32 221111122368899999988764
No 123
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.77 E-value=4.5e-06 Score=74.71 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=34.6
Q ss_pred CCCCCCCchH----HHHHHhcCCChhhhhhhccchhhhHhh
Q 038991 1 QDRNSSLLDS----VLCNILSFLTTKIDVATCILSSRWRHV 37 (287)
Q Consensus 1 ~D~is~LPd~----vL~~Ils~L~~~~~~~~s~vSkrW~~l 37 (287)
.|.|+.||+| ++.+||+||+.+++++++.|||+|+++
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4788999999 999999999999999999999999953
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.76 E-value=4.4e-06 Score=75.82 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
.++++|+++.+.. ..+| .+..+++|++|+++++.+..+|. ..++|+.|++ +..+.+- .. +..+++|+.|
T Consensus 131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~l---~~-~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEEL---PE-LQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSC---CC-CTTCTTCCEE
T ss_pred CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCcC---cc-ccCCCCCCEE
Confidence 4566666654432 2345 35566777777777766554441 2356777777 6554431 11 4567777777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
++.+| ...+ +.. ..++|+.|.+.++
T Consensus 201 ~l~~N-~l~~-l~~---~~~~L~~L~l~~n 225 (454)
T 1jl5_A 201 YADNN-SLKK-LPD---LPLSLESIVAGNN 225 (454)
T ss_dssp ECCSS-CCSS-CCC---CCTTCCEEECCSS
T ss_pred ECCCC-cCCc-CCC---CcCcccEEECcCC
Confidence 77777 5443 221 1246666666665
No 125
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=7.3e-06 Score=72.10 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=94.7
Q ss_pred CCceEEEEEEecCc--------cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHH-
Q 038991 93 RDVRELELNIENQQ--------RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLF- 162 (287)
Q Consensus 93 ~~l~~L~l~~~~~~--------~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~- 162 (287)
.++++|.+...... ...+...+..+++|++|.|+++....++ . ...++|+.|.| .+.+.+ ..+..+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-~-~~~~~L~~L~L~~~~l~~-~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-K-KPRPNLKSLEIISGGLPD-SVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-S-CBCTTCSEEEEECSBCCH-HHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-c-ccCCCCcEEEEecCCCCh-HHHHHHHH
Confidence 59999988432111 0123344456789999999988544444 2 45899999999 777643 5566655
Q ss_pred ccCCccceEEeeeee-ccCC-C-e---e-eEEE-ECCCcceEEEEEeeccccccccCCcccEE--EEcCccEEEEEEecc
Q 038991 163 SSCPSIEELCLKVYL-KYDG-P-A---T-NFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCL--IMAPLLQLLHVVDDL 232 (287)
Q Consensus 163 ~~cp~Le~L~l~~c~-~~~~-~-~---~-~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~--i~ap~L~~L~l~~~~ 232 (287)
..+|+||.|+|..+. ...+ . + . .+.. ..|+|+.|.+.+| ... +.....+. -..|+|++|+++.+.
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~---~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQ---NVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTH---HHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCc---hHHHHHHHhCccCCCCCEEECCCCC
Confidence 479999999996431 1111 0 1 1 1111 3689999999998 321 10000110 136899999998775
Q ss_pred ccc-----e--eeecCCCceeEEEEEE
Q 038991 233 MVS-----Y--EVHDLQFLQTVNLAIL 252 (287)
Q Consensus 233 ~~~-----~--~~~~~p~L~~~~l~~~ 252 (287)
... + .+.++++|+.+++..+
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCC
Confidence 432 1 2246789999998644
No 126
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.75 E-value=1.4e-06 Score=81.56 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCceEEEEEEecCccccCCC-CCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPE-SIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++|+|+.+. ...+|+ .+..+++|++|+|++|.+..++. ....+++|++|+| +..+.. .-...+.++++|+
T Consensus 52 ~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCC
Confidence 578899987654 345554 45668999999999998776653 3467999999999 776542 1123578899999
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCC-cccEEEEcCccEEEEEEeccc
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNF-HHNCLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~-~~~~~i~ap~L~~L~l~~~~~ 233 (287)
+|++.+| ...+ +....+ ..++|+.|.++++ .. .+. .....-..++|++|+++++..
T Consensus 128 ~L~Ls~N-~l~~-l~~~~~~~L~~L~~L~Ls~N--~l----~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 128 KLVAVET-NLAS-LENFPIGHLKTLKELNVAHN--LI----QSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EEECTTS-CCCC-STTCCCTTCTTCCEEECCSS--CC----CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCC-cCCC-CChhhhhcCcccCeeccccC--cc----ccCCCchhhccchhhhhhcccCccc
Confidence 9999999 6655 433333 4578999999887 32 110 111222458899998887654
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.74 E-value=1.7e-06 Score=70.67 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=85.2
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
..+++|+++.+.......+..+..+++|++|+|+++.+..++. ....+++|+.|+| +..+.. .....+.++++|+.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCGGGGTTCSSCCE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cCHhHhcCCcCCCE
Confidence 4567777765543222112335567899999999988766543 4568899999999 776653 22334678999999
Q ss_pred EEeeeeeccCCCeeeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991 171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 233 (287)
|+|+++ ...+ ...-.+ ..++|+.|.+.++ .. .+......-..++|++|++.++..
T Consensus 110 L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 110 LMLRSN-RITC-VGNDSFIGLSSVRLLSLYDN--QI----TTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTS-CCCC-BCTTSSTTCTTCSEEECTTS--CC----CCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCC-cCCe-ECHhHcCCCccCCEEECCCC--cC----CEECHHHhcCCCCCCEEEecCcCC
Confidence 999999 6554 321111 4578999999887 32 221111122468999999988764
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.73 E-value=1.3e-06 Score=76.76 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=13.3
Q ss_pred CCcccEEEeceeeccccCC-CcccCCCccEEEE
Q 038991 117 CRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV 148 (287)
Q Consensus 117 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L 148 (287)
+++|++|+|+++.+..++. ....+++|+.|+|
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3444444444444333221 2234444444444
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.69 E-value=6e-06 Score=74.89 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEEECCCcceE
Q 038991 118 RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFIISSSTLKRF 196 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i~~~~Lk~L 196 (287)
++|++|++++|.+..+| ....+++|+.|++ +..+.+ +-...++|+.|++.+| ...+ ...+ -..++|+.|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------lp~~~~~L~~L~L~~n-~l~~-l~~~-~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNN-QLEE-LPEL-QNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCSS-CCCC-TTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc------cCCCcccccEEECcCC-cCCc-Cccc-cCCCCCCEE
Confidence 45666666666555555 4555666666666 544432 1112346666666666 5443 3321 134566666
Q ss_pred EEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce-eeecCCCceeEEEEE
Q 038991 197 YWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY-EVHDLQFLQTVNLAI 251 (287)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~-~~~~~p~L~~~~l~~ 251 (287)
.+.++ .. .+ +.-..++|++|+++++....+ .++.+++|+.++++.
T Consensus 201 ~l~~N--~l----~~----l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 201 YADNN--SL----KK----LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 246 (454)
T ss_dssp ECCSS--CC----SS----CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred ECCCC--cC----Cc----CCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCC
Confidence 66666 21 11 001125777777776654311 355677777777653
No 130
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.69 E-value=3e-06 Score=79.34 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=91.3
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT 184 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 184 (287)
-..+|..+- +++++|+|+++.+..++. ....+++|+.|+| +..+.. --...+.++++|+.|+|++| ...+ +.
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N-~l~~-l~ 116 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN-PIQS-LA 116 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCCE-EC
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCC-cCCC-CC
Confidence 445665432 469999999998877653 4568999999999 876542 11234788999999999999 6433 21
Q ss_pred eEE-EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccc----eeeecCCCceeEEEEEE
Q 038991 185 NFI-ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS----YEVHDLQFLQTVNLAIL 252 (287)
Q Consensus 185 ~l~-i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~----~~~~~~p~L~~~~l~~~ 252 (287)
.-. -..++|+.|.+.++ .. .+......-..++|++|+++++.... ..++.+++|+++++..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N--~l----~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVET--NL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GGGGTTCTTCCEEECTTS--CC----CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCC--cC----CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 111 13578999999888 32 22111122246899999999886542 34577899999988644
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.66 E-value=1.8e-05 Score=69.05 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=95.0
Q ss_pred CCceEEEEEEecCccccCCCCC-cCCCcccEEEeceeeccc-cCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNIENQQRLELPESI-YSCRSLEVLKLDYDFDIA-VPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
+++++|+|+.+. ...+|... ..+++|++|+|+++.... ++. ...++++|+.+.. +..-.. ......+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccc
Confidence 578888887654 34666544 456889999998886543 332 2346777776555 542111 1112346778899
Q ss_pred ceEEeeeeeccCCCeeeE-EEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccceee--ecCCCce
Q 038991 169 EELCLKVYLKYDGPATNF-IISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSYEV--HDLQFLQ 245 (287)
Q Consensus 169 e~L~l~~c~~~~~~~~~l-~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~~~--~~~p~L~ 245 (287)
+.|.+.++ .... .... ......+..|.+.++. ... .... ..+.-....++.|++.++....+.- ...++|+
T Consensus 107 ~~L~l~~n-~l~~-~~~~~~~~~~~l~~l~l~~~~-~i~-~l~~--~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNT-GIKH-LPDVHKIHSLQKVLLDIQDNI-NIH-TIER--NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CEEEEEEE-CCSS-CCCCTTCCBSSCEEEEEESCT-TCC-EECT--TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred cccccccc-cccc-CCchhhcccchhhhhhhcccc-ccc-cccc--cchhhcchhhhhhccccccccCCChhhccccchh
Confidence 99999988 6544 2221 1234455666665541 000 0000 0000012467778877776542221 1233444
Q ss_pred eEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeE
Q 038991 246 TVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVIL 285 (287)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~ 285 (287)
++.+..+..... .. ...++++++++.|+++.|.|+
T Consensus 181 ~l~l~~~n~l~~-i~----~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 181 ELNLSDNNNLEE-LP----NDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEECTTCTTCCC-CC----TTTTTTEECCSEEECTTSCCC
T ss_pred HHhhccCCcccC-CC----HHHhccCcccchhhcCCCCcC
Confidence 444321111001 11 245678888888888887664
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.60 E-value=5.1e-06 Score=65.14 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=79.4
Q ss_pred CCceEEEEEEecCccccCCCCCcCC-CcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSC-RSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
.++++|++..+.. ..+|. +..+ ++|++|+|+++.+..++ ....+++|+.|+| +..+.. .-..++..+|+|+.
T Consensus 19 ~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCE
T ss_pred CCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCccc-ccccCCCCCEEECCCCcccc--cCcchhhcCCCCCE
Confidence 3677777755443 23443 3344 48888888888776654 5667888888888 766543 11234567888888
Q ss_pred EEeeeeeccCCCeeeE--EEECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991 171 LCLKVYLKYDGPATNF--IISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l--~i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 233 (287)
|+++++ ...+ ...+ --..++|+.|.+.++ ... ........+.-..|+|+.|++.++..
T Consensus 93 L~L~~N-~i~~-~~~~~~l~~l~~L~~L~l~~N--~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNN-SLVE-LGDLDPLASLKSLTYLCILRN--PVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSC-CCCC-GGGGGGGGGCTTCCEEECCSS--GGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCC-cCCc-chhhHhhhcCCCCCEEEecCC--CCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888888 6544 3321 114578888888887 321 00110000233568888888877754
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.54 E-value=5.6e-06 Score=72.70 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=84.6
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCCCc-c-cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSG-M-CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA 183 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~-~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~ 183 (287)
...+|..+. ..++.|+|+++.+..++... . .+++|+.|+| +..+.. .....+.++++|+.|+|+++ .... +
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~l~~-~ 103 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSN-HLHT-L 103 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCE-E
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEEECCCC-cCCc-C
Confidence 344554432 34778888887766554332 2 6788888888 665542 11123567788888888887 5432 1
Q ss_pred eeEEE-ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccccce---ee---ecCCCceeEEEEEEEccc
Q 038991 184 TNFII-SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVSY---EV---HDLQFLQTVNLAILFLQW 256 (287)
Q Consensus 184 ~~l~i-~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~~---~~---~~~p~L~~~~l~~~~~~~ 256 (287)
..-.+ ..++|+.|.++++ ... +......-..++|+.|+++++....+ .+ ..+++|+.+++..+...
T Consensus 104 ~~~~~~~l~~L~~L~L~~N--~i~----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNN--HIV----VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCC----EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CHHHhCCCcCCCEEECCCC--ccc----EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 11011 2467777777776 221 10001111347788888877765422 12 45777777776533211
Q ss_pred cccChhhHHHHHhcCCc--ceEEEEecCee
Q 038991 257 SVLNPWEVVQLLNGILN--CKSLTLSSGVI 284 (287)
Q Consensus 257 ~~~~~~~~~~~l~~l~~--v~~L~l~~~~i 284 (287)
.. ....+..+++ ++.|.++.|.+
T Consensus 177 -~l----~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 -KL----PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -CC----CHHHHHHSCHHHHTTEECCSSCE
T ss_pred -cc----CHHHhhhccHhhcceEEecCCCc
Confidence 00 1233444544 35566666654
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.51 E-value=5.8e-06 Score=65.89 Aligned_cols=89 Identities=20% Similarity=0.122 Sum_probs=55.4
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCCC--cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPVS--GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA 183 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~ 183 (287)
...+|..+.. +|++|.|+++.+..++.. ...+++|+.|+| +..+.+ .....+.++++|+.|+|+++ ...+ .
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~-~ 93 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGEN-KIKE-I 93 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSC-CCCE-E
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--cCHhHcCCcccCCEEECCCC-cCCc-c
Confidence 3455654433 788888888877665532 557888888888 766643 11234667888888888888 5433 2
Q ss_pred eeEEE-ECCCcceEEEEEe
Q 038991 184 TNFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 184 ~~l~i-~~~~Lk~L~l~~~ 201 (287)
..-.+ ..++|+.|.++++
T Consensus 94 ~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CSSSSTTCTTCCEEECCSS
T ss_pred CHHHhcCCCCCCEEECCCC
Confidence 11111 2356666666665
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.50 E-value=2e-07 Score=82.49 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=87.1
Q ss_pred HHcCCceEEEEEEecCc---cccCCCCCc-CCCcccEEEeceeeccc--cCCCcccCCCccEEEE-EEEeCCcch---HH
Q 038991 90 AVMRDVRELELNIENQQ---RLELPESIY-SCRSLEVLKLDYDFDIA--VPVSGMCFPNLKFLRV-SLQYPENQL---TE 159 (287)
Q Consensus 90 a~~~~l~~L~l~~~~~~---~~~l~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L-~~~~~~~~~---l~ 159 (287)
.+.+.+++|+++.+... ...+...+. .+.+|++|+|++|.+.+ .......+++|+.|+| ++.+.+ .+ +.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHH
Confidence 44468898888665543 112222222 23689999999887643 1112235678999999 877754 33 33
Q ss_pred HHH-ccCCccceEEeeeeeccCCC-eeeEE---EECCCcceEEEEEeeccccccccCC--cccEEEEcCccEEEEEEecc
Q 038991 160 KLF-SSCPSIEELCLKVYLKYDGP-ATNFI---ISSSTLKRFYWTVLVDDYNFAFNNF--HHNCLIMAPLLQLLHVVDDL 232 (287)
Q Consensus 160 ~l~-~~cp~Le~L~l~~c~~~~~~-~~~l~---i~~~~Lk~L~l~~~~~~~~~~~~~~--~~~~~i~ap~L~~L~l~~~~ 232 (287)
..+ ..++.|+.|+|++| ...+. ...+. -..++|+.|++++| ... ..|. .....-..++|++|+++++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~--~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLG--DEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS--SCH--HHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC--CCC--cHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 333 46888999999999 54320 11111 13567888888877 321 0000 00011123577888877775
Q ss_pred ccc-------eeeecCCCceeEEEEE
Q 038991 233 MVS-------YEVHDLQFLQTVNLAI 251 (287)
Q Consensus 233 ~~~-------~~~~~~p~L~~~~l~~ 251 (287)
... ..+...++|+.++++.
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 431 1123456777776653
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.47 E-value=5.9e-06 Score=65.98 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=51.6
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATN 185 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~ 185 (287)
...+|..+. ++|++|.|+++.+..+|.....+++|+.|+| +..+.. .....+.++++|+.|+|+++ ...+ +..
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N-~l~~-i~~ 95 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYN-RLRC-IPP 95 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCB-CCT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCCC-ccCE-eCH
Confidence 344554432 4688888887776666545556777888877 665543 11223566777888888777 4433 111
Q ss_pred EEE-ECCCcceEEEEEe
Q 038991 186 FII-SSSTLKRFYWTVL 201 (287)
Q Consensus 186 l~i-~~~~Lk~L~l~~~ 201 (287)
-.+ ..++|+.|.+.++
T Consensus 96 ~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhCCCCCCCEEECCCC
Confidence 011 2356666666655
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.44 E-value=9.6e-06 Score=63.52 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=45.7
Q ss_pred CcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EECCCcc
Q 038991 118 RSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-ISSSTLK 194 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~~~~Lk 194 (287)
++|++|+++++.+..++.. ...+++|+.|+| +..+.. .....+..+++|+.|++.++ ...+ ...-. -..++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHEN-KLQS-LPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCC-Cccc-cCHHHhhCCcccC
Confidence 5688888887766554422 346777888877 665543 11223566777888887777 5433 11110 1234555
Q ss_pred eEEEEEe
Q 038991 195 RFYWTVL 201 (287)
Q Consensus 195 ~L~l~~~ 201 (287)
.|.+.++
T Consensus 104 ~L~l~~N 110 (177)
T 2o6r_A 104 ELALDTN 110 (177)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 5555554
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=7.2e-06 Score=76.49 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=38.4
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELC 172 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 172 (287)
.++.|+++.+. ...+|. +..+++|+.|+|+++.+..+|.....+++|+.|+| +..+.+ +. -+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCC--CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCCcEEE
Confidence 45555554332 223443 44555666666666555555434445556666665 444432 11 244555555555
Q ss_pred eeee
Q 038991 173 LKVY 176 (287)
Q Consensus 173 l~~c 176 (287)
|+++
T Consensus 515 Ls~N 518 (567)
T 1dce_A 515 LCNN 518 (567)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5555
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=1.2e-05 Score=74.96 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=44.2
Q ss_pred cccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcceE
Q 038991 119 SLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKRF 196 (287)
Q Consensus 119 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~L 196 (287)
.|+.|+|+++.+..+| ....+++|+.|+| +..+.. +..-+.++++|+.|+|+++ ...+ ++ .+ ..++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N-~l~~-lp--~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDN-ALEN-VD--GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSS-CCCC-CG--GGTTCSSCCEE
T ss_pred CceEEEecCCCCCCCc-CccccccCcEeecCcccccc---cchhhhcCCCCCEEECCCC-CCCC-Cc--ccCCCCCCcEE
Confidence 4677777777666666 4666777777777 655542 2223566777777777777 5444 32 11 23455555
Q ss_pred EEEEe
Q 038991 197 YWTVL 201 (287)
Q Consensus 197 ~l~~~ 201 (287)
.++++
T Consensus 514 ~Ls~N 518 (567)
T 1dce_A 514 LLCNN 518 (567)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55554
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.06 E-value=5.6e-05 Score=59.06 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=69.8
Q ss_pred CCceEEEEEEecCccccCCCCC-cCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLELPESI-YSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++|++..+.. ..++... ..+++|++|+|+++.+..++.. ...+++|+.|+| +..+.. .....+..+++|+
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cCHHHhhCCcccC
Confidence 4788888866543 3455443 5678999999999987766533 358999999999 776653 1223467789999
Q ss_pred eEEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991 170 ELCLKVYLKYDGPATNFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 170 ~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~ 201 (287)
.|++.++ ...+ +..-.. ..++|+.|.+.++
T Consensus 104 ~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 104 ELALDTN-QLKS-VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EEECCSS-CCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCC-cceE-eCHHHhcCCcccCEEEecCC
Confidence 9999999 6544 221111 2356777766665
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.02 E-value=2.3e-05 Score=62.39 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=82.2
Q ss_pred ccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE-ECCCcceEE
Q 038991 120 LEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII-SSSTLKRFY 197 (287)
Q Consensus 120 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i-~~~~Lk~L~ 197 (287)
-++++++++.+..+|. .-.++|+.|+| +..+.. -.-...+..+++|+.|+|+++ ...+ ...-.+ ..++|+.|.
T Consensus 10 ~~~l~~s~~~l~~ip~--~~~~~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR--DIPLHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRN-QLTG-IEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCSSCCS--CCCTTCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSS-CCCC-BCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCcCcCcc--CCCCCCCEEECCCCcCCc-cCCccccccCCCCCEEECCCC-CCCC-cCHhHcCCcccCCEEE
Confidence 3788898887766762 22459999999 776653 111124678999999999999 6654 221111 357899999
Q ss_pred EEEeeccccccccCCcccEEEEcCccEEEEEEeccccc---eeeecCCCceeEEEEEEE
Q 038991 198 WTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLMVS---YEVHDLQFLQTVNLAILF 253 (287)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~~~---~~~~~~p~L~~~~l~~~~ 253 (287)
++++ .. .+......-..++|++|+++++.... ..++.+++|+.++++.+.
T Consensus 85 Ls~N--~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 85 LGEN--KI----KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCSC--CC----CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCC--cC----CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9988 32 11011111236899999999887652 346778899998886553
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.00 E-value=4.5e-05 Score=60.75 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccce
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEE 170 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 170 (287)
+++++|++..+.. ..+|..+...++|++|+|+++.+..++. ....+++|+.|+| +..+.. .....+.++++|+.
T Consensus 31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eCHHHhCCCCCCCE
Confidence 4788888866543 4666667778999999999998876543 3568899999999 766643 11234678899999
Q ss_pred EEeeeeeccCCCeeeEEE-ECCCcceEEEEEe
Q 038991 171 LCLKVYLKYDGPATNFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 171 L~l~~c~~~~~~~~~l~i-~~~~Lk~L~l~~~ 201 (287)
|+|.++ .... +..-.+ ..++|+.|.+.++
T Consensus 107 L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 107 LSLHGN-DISV-VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EECCSS-CCCB-CCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-CCCe-eChhhhhcCccccEEEeCCC
Confidence 999999 5543 211111 2356777776655
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.94 E-value=1.8e-05 Score=75.98 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=56.3
Q ss_pred CCceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceE
Q 038991 93 RDVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEEL 171 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 171 (287)
..++.|+|+.+. ...+|..++.+++|++|+|+++.+..+|.....+++|+.|+| +..+.. +-.-+.++++|+.|
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS---LPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS---CCSSGGGGTTCSEE
T ss_pred CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc---cChhhcCCCCCCEE
Confidence 355566654433 235565666666677777776666555544556677777777 555432 11124556677777
Q ss_pred EeeeeeccCCCeeeEEEECCCcceEEEEEe
Q 038991 172 CLKVYLKYDGPATNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 172 ~l~~c~~~~~~~~~l~i~~~~Lk~L~l~~~ 201 (287)
+|.+| .+.. +..-.-..++|+.|.++++
T Consensus 299 ~L~~N-~l~~-lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 299 YFFDN-MVTT-LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ECCSS-CCCC-CCSSTTSCTTCCCEECTTS
T ss_pred ECCCC-CCCc-cChhhhcCCCccEEeCCCC
Confidence 77766 4433 2221113456666666665
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.83 E-value=2.2e-05 Score=75.41 Aligned_cols=112 Identities=16% Similarity=0.033 Sum_probs=75.6
Q ss_pred CCCCCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEEE
Q 038991 110 LPESIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFII 188 (287)
Q Consensus 110 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~i 188 (287)
.+..+....+|+.|+|+++.+..++.....+++|+.|+| +..+.. +..-+..+++|+.|+|+++ .+.. +..-.-
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~ 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHN-RLTS-LPAELG 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTS-CCSS-CCSSGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCC-cCCc-cChhhc
Confidence 355566778899999999988777756668999999999 776653 2223578999999999999 6543 322112
Q ss_pred ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc
Q 038991 189 SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM 233 (287)
Q Consensus 189 ~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~ 233 (287)
..++|+.|.++++ ... . .....-..++|+.|+++++..
T Consensus 291 ~l~~L~~L~L~~N--~l~----~-lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 291 SCFQLKYFYFFDN--MVT----T-LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCSEEECCSS--CCC----C-CCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEECCCC--CCC----c-cChhhhcCCCccEEeCCCCcc
Confidence 4578999999888 321 1 111122468999999987764
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.00031 Score=60.56 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=19.1
Q ss_pred CCcccEEEeceeeccccCC-CcccCCCccEEEE
Q 038991 117 CRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV 148 (287)
Q Consensus 117 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L 148 (287)
|.+|++|.|.. ....++. .+..|++|+.+.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l 131 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI 131 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEc
Confidence 67788887776 3433322 3456778888777
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.71 E-value=2.1e-05 Score=62.34 Aligned_cols=95 Identities=16% Similarity=-0.011 Sum_probs=51.8
Q ss_pred cchhhHHHHHHc--CCceEEEEEEe-cCc---cccCCCCCcCCCcccEEEeceeecccc-----CCCcccCCCccEEEE-
Q 038991 81 GRFKGWVSLAVM--RDVRELELNIE-NQQ---RLELPESIYSCRSLEVLKLDYDFDIAV-----PVSGMCFPNLKFLRV- 148 (287)
Q Consensus 81 ~~~~~wl~~a~~--~~l~~L~l~~~-~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L- 148 (287)
..+..++..+.. +.+++|+|+.+ ..+ ...+...+..+++|++|+|++|.+.+. .......++|+.|+|
T Consensus 22 ~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred cHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 345555655554 46777777654 332 222333344566777777777755331 101124466777777
Q ss_pred EEEeCCcch---HHHHHccCCccceEEe--eee
Q 038991 149 SLQYPENQL---TEKLFSSCPSIEELCL--KVY 176 (287)
Q Consensus 149 ~~~~~~~~~---l~~l~~~cp~Le~L~l--~~c 176 (287)
+..+.+ .+ +...+..++.|++|+| .++
T Consensus 102 ~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 102 SNFISG-SGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp SSCCCH-HHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred CCcCCH-HHHHHHHHHHHhCCCceEEEecCCCC
Confidence 665544 22 3344556667777777 555
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.56 E-value=0.00027 Score=54.88 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=49.2
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT 184 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 184 (287)
...+|..+. ++|++|+|+++.+..++ .....+++|+.|+| +..+.. .....+.++++|+.|+|+++ ...+ +.
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N-~l~~-~~ 94 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDN-QLKS-IP 94 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCC-ccCE-eC
Confidence 344554442 66777888777666543 23456777777777 655543 11233566777777777777 5433 21
Q ss_pred eEEE-ECCCcceEEEEEe
Q 038991 185 NFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 185 ~l~i-~~~~Lk~L~l~~~ 201 (287)
.-.+ ..++|+.|.+.++
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEEeCCC
Confidence 1001 2345555555554
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.52 E-value=0.00032 Score=54.77 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=49.8
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT 184 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 184 (287)
...+|..+. ++|++|+|+++.+..++ .....+++|+.|+| +..+.. .-..++..+++|+.|+|+++ ...+ +.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N-~l~~-l~ 97 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDN-HLKS-IP 97 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCC-CC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCC-ccce-eC
Confidence 345555443 66788888777766543 23456777777777 655543 11223556777777777777 5433 21
Q ss_pred eEEE-ECCCcceEEEEEe
Q 038991 185 NFII-SSSTLKRFYWTVL 201 (287)
Q Consensus 185 ~l~i-~~~~Lk~L~l~~~ 201 (287)
.-.+ ..++|+.|.+.++
T Consensus 98 ~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTTCTTCSEEECCSS
T ss_pred HHHhccccCCCEEEeCCC
Confidence 1001 2345666665555
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.48 E-value=0.00099 Score=51.90 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..+++|+++.+.. ..+ |..+...++|++|+|+++.+..+|.. ...+++|+.|+| +..+.. .....+..+++|+
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce--eCHHHhccccCCC
Confidence 5788898876543 344 44556779999999999988777644 358999999999 766653 1123467899999
Q ss_pred eEEeeeeeccCC
Q 038991 170 ELCLKVYLKYDG 181 (287)
Q Consensus 170 ~L~l~~c~~~~~ 181 (287)
.|.|.++ .+..
T Consensus 109 ~L~L~~N-~~~c 119 (174)
T 2r9u_A 109 HIYLYNN-PWDC 119 (174)
T ss_dssp EEECCSS-CBCT
T ss_pred EEEeCCC-Cccc
Confidence 9999998 6543
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.42 E-value=0.00079 Score=59.90 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=38.1
Q ss_pred CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE--EEEeCCcchHHHHHccCCccceEEeee
Q 038991 113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV--SLQYPENQLTEKLFSSCPSIEELCLKV 175 (287)
Q Consensus 113 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~l~~ 175 (287)
.+..|.+|+.+.|..+....++..+..+.+|+.+.| ++...++ ..+.+|++|+.+.+..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCC
Confidence 344578888888876655555444445677787777 3322222 3477888888888864
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.41 E-value=0.0012 Score=51.16 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCceEEEEEEecCccccC-CCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccc
Q 038991 93 RDVRELELNIENQQRLEL-PESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIE 169 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 169 (287)
..++.|+++.+. ...+ |..+...++|++|+|+++.+..++.. ...+++|+.|+| +..+.. .....+..+++|+
T Consensus 30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS--IPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE--eCHHHhcCCCCCC
Confidence 578888886654 3444 44456679999999999988776644 358999999999 776653 1123467899999
Q ss_pred eEEeeeeeccCC
Q 038991 170 ELCLKVYLKYDG 181 (287)
Q Consensus 170 ~L~l~~c~~~~~ 181 (287)
.|+|.++ .+..
T Consensus 106 ~L~L~~N-~~~c 116 (170)
T 3g39_A 106 HIWLLNN-PWDC 116 (170)
T ss_dssp EEECCSS-CBCT
T ss_pred EEEeCCC-CCCC
Confidence 9999998 6543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.16 E-value=0.00068 Score=58.70 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=58.3
Q ss_pred cccCCCCCcCCCcccEEEece-eeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCe
Q 038991 107 RLELPESIYSCRSLEVLKLDY-DFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPA 183 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~ 183 (287)
...+|. +....+|++|+|++ +.+..++. ....+++|+.|+| +..+.. .....+.++++|+.|+|+++ .+.+ +
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~-~ 95 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFN-ALES-L 95 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSS-CCSC-C
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCCC-ccce-e
Confidence 445777 77778888888885 76655542 3457888888888 665542 22234677888888888888 6544 2
Q ss_pred eeEEEECCCcceEEEEEe
Q 038991 184 TNFIISSSTLKRFYWTVL 201 (287)
Q Consensus 184 ~~l~i~~~~Lk~L~l~~~ 201 (287)
..-.....+|+.|.+.++
T Consensus 96 ~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSTTTCSCCCCEEECCSS
T ss_pred CHHHcccCCceEEEeeCC
Confidence 211112234888887766
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.94 E-value=0.00022 Score=56.31 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=12.0
Q ss_pred HHHHHhcCCcceEEEEecCee
Q 038991 264 VVQLLNGILNCKSLTLSSGVI 284 (287)
Q Consensus 264 ~~~~l~~l~~v~~L~l~~~~i 284 (287)
+.+.++..++++.|+++.+.|
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCcCEEeccCCCC
Confidence 455555556666666655543
No 154
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.83 E-value=0.0068 Score=52.53 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=72.7
Q ss_pred cccCCCCCcCCCcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCee
Q 038991 107 RLELPESIYSCRSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPAT 184 (287)
Q Consensus 107 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 184 (287)
..++|..+ .+++++|+|+++.+..+|.. ..++++|+.|+| +..+.+ ..-...+.++++|.++.+..+ . . +.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~-N--~-l~ 93 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKA-N--N-LL 93 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEE-T--T-CC
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccC-C--c-cc
Confidence 45677655 36799999999988777643 468999999999 765432 101124677888887666665 2 1 22
Q ss_pred eEE----EECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEec
Q 038991 185 NFI----ISSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDD 231 (287)
Q Consensus 185 ~l~----i~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~ 231 (287)
.+. -..++|+.|.+.++ .. .+..........++..+.+.+.
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n--~l----~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNT--GI----KHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEE--CC----SSCCCCTTCCBSSCEEEEEESC
T ss_pred ccCchhhhhcccccccccccc--cc----ccCCchhhcccchhhhhhhccc
Confidence 221 24589999999998 32 2211222345667888888765
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.07 E-value=0.0014 Score=58.35 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=26.9
Q ss_pred CceEEEEEEecCccccCCCCCcCCCcccEEEeceeeccccC-CCcccCCCccEEEE
Q 038991 94 DVRELELNIENQQRLELPESIYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV 148 (287)
Q Consensus 94 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L 148 (287)
+++.+++... ....++...|.|.+|+.+.|... ...++ ..+..|++|+.+.+
T Consensus 181 ~L~~l~l~~n--~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 181 NLKKADLSKT--KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCCEEECTTS--CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred cCCeeecCCC--cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 5555555221 13445556666677777777543 21211 13345666666666
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.037 Score=47.31 Aligned_cols=29 Identities=7% Similarity=-0.072 Sum_probs=15.0
Q ss_pred cCccEEEEEEecccc---ceeeecCCCceeEE
Q 038991 220 APLLQLLHVVDDLMV---SYEVHDLQFLQTVN 248 (287)
Q Consensus 220 ap~L~~L~l~~~~~~---~~~~~~~p~L~~~~ 248 (287)
+++|+++++.+.... ...+.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 456666665444332 23455566666554
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.59 E-value=0.0013 Score=57.86 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCceEEEEEEecCcc---ccCCCCC-cCCCcccEEEeceeeccc-----cCCCcccCCCccEEEE-EEEeCCcc--hHHH
Q 038991 93 RDVRELELNIENQQR---LELPESI-YSCRSLEVLKLDYDFDIA-----VPVSGMCFPNLKFLRV-SLQYPENQ--LTEK 160 (287)
Q Consensus 93 ~~l~~L~l~~~~~~~---~~l~~~~-~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~~--~l~~ 160 (287)
+.+++|+|+.+.... ..+...+ ..+++|++|+|++|.+.+ ++.....+++|+.|+| +..+.+.+ .+..
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 378999998775431 1222122 245789999999997643 1111246899999999 87765422 2455
Q ss_pred HHccCCccceEEeeeeeccCCCeeeEEE-----ECCCcceEEEEEe
Q 038991 161 LFSSCPSIEELCLKVYLKYDGPATNFII-----SSSTLKRFYWTVL 201 (287)
Q Consensus 161 l~~~cp~Le~L~l~~c~~~~~~~~~l~i-----~~~~Lk~L~l~~~ 201 (287)
.+..++.|+.|+|++| ...+ .....+ ..++|+.|+++++
T Consensus 206 ~L~~~~~L~~L~Ls~N-~i~~-~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 206 QLDRNRQLQELNVAYN-GAGD-TAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HGGGCSCCCEEECCSS-CCCH-HHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHhcCCCcCeEECCCC-CCCH-HHHHHHHHHHHhCCCCCEEeccCC
Confidence 6778899999999999 6543 221111 3589999999998
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.35 E-value=0.0098 Score=49.68 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=43.7
Q ss_pred CCceEEEEEEecCc-cccCCCCCcCCCcccEEEeceeeccccCCCcccCC--CccEEEE-EEEeCC----cch-HHHHHc
Q 038991 93 RDVRELELNIENQQ-RLELPESIYSCRSLEVLKLDYDFDIAVPVSGMCFP--NLKFLRV-SLQYPE----NQL-TEKLFS 163 (287)
Q Consensus 93 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L-~~~~~~----~~~-l~~l~~ 163 (287)
..++.|+|+.+... ...+|..+..+++|+.|+|+++.+.+.. ....+. +|+.|.| +-.+.+ ... ...++.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 46777777655433 2234444456677777777777665432 222333 6666666 544432 011 235667
Q ss_pred cCCccceEEe
Q 038991 164 SCPSIEELCL 173 (287)
Q Consensus 164 ~cp~Le~L~l 173 (287)
.+|+|+.|+=
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 7777776653
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.74 E-value=0.031 Score=48.09 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCceEEEEEE-ecCccccCC-CCCcCCCcccEEEeceeeccccCC-CcccCCCccEEEE-EEEeCCcchHHHHHccCCcc
Q 038991 93 RDVRELELNI-ENQQRLELP-ESIYSCRSLEVLKLDYDFDIAVPV-SGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSI 168 (287)
Q Consensus 93 ~~l~~L~l~~-~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 168 (287)
.++++|+|+. +. ...++ ..+...++|+.|+|+++.+..++. ....+++|+.|+| +-.+.. .-..++...+ |
T Consensus 31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~-L 105 (347)
T 2ifg_A 31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLS-L 105 (347)
T ss_dssp SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCC-C
T ss_pred CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce--eCHHHcccCC-c
Confidence 3688888863 33 23444 345567888888888887766543 3467888888888 665543 1112233334 8
Q ss_pred ceEEeeee
Q 038991 169 EELCLKVY 176 (287)
Q Consensus 169 e~L~l~~c 176 (287)
+.|.|.++
T Consensus 106 ~~l~l~~N 113 (347)
T 2ifg_A 106 QELVLSGN 113 (347)
T ss_dssp CEEECCSS
T ss_pred eEEEeeCC
Confidence 88888776
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.34 E-value=0.095 Score=46.00 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=28.7
Q ss_pred cCccEEEEEEecc--ccceeeecCCCceeEEEEEEEccccccChhhHHHHHhcCCcceEEEEecCeeEe
Q 038991 220 APLLQLLHVVDDL--MVSYEVHDLQFLQTVNLAILFLQWSVLNPWEVVQLLNGILNCKSLTLSSGVILL 286 (287)
Q Consensus 220 ap~L~~L~l~~~~--~~~~~~~~~p~L~~~~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~i~~ 286 (287)
+.+|+++.+-... .....+.++.+|+.+.+.... ....-+..+++++.+.+..+.++|
T Consensus 333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~---------~~~~~~~~~~~L~~i~i~~~~~~I 392 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR---------SQWNAISTDSGLQNLPVAPGSIDV 392 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH---------HHHHTCBCCCCC------------
T ss_pred CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce---------eehhhhhccCCCCEEEeCCCCEEE
Confidence 5778888775432 124567889999988764221 112345677889999999888775
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=86.02 E-value=0.13 Score=42.85 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=18.0
Q ss_pred cCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 139 CFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 139 ~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
.+|+|+.|+| +-.+.+-..+...+..+|+|+.|+|+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 3455555555 4444332233334445555555555555
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=83.27 E-value=0.36 Score=42.25 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=68.8
Q ss_pred CCcCCCcccEEEeceeeccccCCCcccCCCccEEEE-EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE---E
Q 038991 113 SIYSCRSLEVLKLDYDFDIAVPVSGMCFPNLKFLRV-SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI---I 188 (287)
Q Consensus 113 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~---i 188 (287)
....|..|+.+.+......-.......++.|+...+ ...+.+ . .+.+|++|+.+.+... +..+. -
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~----~F~~~~~L~~i~l~~~------i~~I~~~aF 316 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-K----TFYGCSSLTEVKLLDS------VKFIGEEAF 316 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-T----TTTTCTTCCEEEECTT------CCEECTTTT
T ss_pred cccccccceeEEcCCCcceeeccccccccccceeccCceeecc-c----cccccccccccccccc------cceechhhh
Confidence 445678899999876532111224557888888888 665544 2 3678899998887543 11111 0
Q ss_pred -ECCCcceEEEEEeeccccccccCCcccEEEEcCccEEEEEEeccc--cceeeecCCCceeEEEE
Q 038991 189 -SSSTLKRFYWTVLVDDYNFAFNNFHHNCLIMAPLLQLLHVVDDLM--VSYEVHDLQFLQTVNLA 250 (287)
Q Consensus 189 -~~~~Lk~L~l~~~~~~~~~~~~~~~~~~~i~ap~L~~L~l~~~~~--~~~~~~~~p~L~~~~l~ 250 (287)
.+.+|+.+++....... . ....-.+.+|+++.+..... ....+.++++|+++.+.
T Consensus 317 ~~c~~L~~i~lp~~v~~I----~---~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 317 ESCTSLVSIDLPYLVEEI----G---KRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEECCCTTCCEE----C---TTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred cCCCCCCEEEeCCcccEE----h---HHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence 24567766663221000 0 01112356777777754421 13467788999988764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.57 E-value=0.13 Score=40.74 Aligned_cols=96 Identities=16% Similarity=0.047 Sum_probs=48.7
Q ss_pred cchhhHHHHHHc--CCceEEEEEEe-cCc---cccCCCCCcCCCcccEEEeceeeccccCC-----CcccCCCccEEEE-
Q 038991 81 GRFKGWVSLAVM--RDVRELELNIE-NQQ---RLELPESIYSCRSLEVLKLDYDFDIAVPV-----SGMCFPNLKFLRV- 148 (287)
Q Consensus 81 ~~~~~wl~~a~~--~~l~~L~l~~~-~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L- 148 (287)
..++..+..+.. ..+++|+|+.. ..+ ...+-..+....+|+.|+|++|.+.+.-. ....-..|+.|+|
T Consensus 27 t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 27 TDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred CCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 456666666655 36777777542 221 12222233345678888888776543110 0013356666666
Q ss_pred EEEeCCcc--hHHHHHccCCccceEEeeee
Q 038991 149 SLQYPENQ--LTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 149 ~~~~~~~~--~l~~l~~~cp~Le~L~l~~c 176 (287)
+..+.+.+ .+...+..-..|++|.|.++
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 55444321 13333444555666666554
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.97 E-value=1.8 Score=37.69 Aligned_cols=80 Identities=11% Similarity=0.216 Sum_probs=47.2
Q ss_pred CcCCCcccEEEeceeeccccC-CCcccCCCccEEEE--EEEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeEE-EE
Q 038991 114 IYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV--SLQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNFI-IS 189 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l~-i~ 189 (287)
...|.+|+.+.+... ...++ ..+..|.+|+.+.| ++.-.++. .+.+|.+|+.+.|...... +..-+ -.
T Consensus 284 F~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~---I~~~aF~~ 355 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTK---IPESAFSN 355 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCB---CCGGGGTT
T ss_pred cccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCE---EhHhHhhC
Confidence 445788888888643 22222 14457888888888 44333322 4778999998888543111 11111 14
Q ss_pred CCCcceEEEEEe
Q 038991 190 SSTLKRFYWTVL 201 (287)
Q Consensus 190 ~~~Lk~L~l~~~ 201 (287)
+.+|+.+++.+.
T Consensus 356 C~~L~~i~~~~~ 367 (394)
T 4gt6_A 356 CTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEESSC
T ss_pred CCCCCEEEECCc
Confidence 678888877665
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=73.30 E-value=0.092 Score=41.58 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=34.2
Q ss_pred CCCcccEEEecee-eccc-----cCCCcccCCCccEEEE-EEEeCCc--chHHHHHccCCccceEEeeee
Q 038991 116 SCRSLEVLKLDYD-FDIA-----VPVSGMCFPNLKFLRV-SLQYPEN--QLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 116 ~~~~L~~L~L~~~-~~~~-----~~~~~~~~~~L~~L~L-~~~~~~~--~~l~~l~~~cp~Le~L~l~~c 176 (287)
...+|++|+|+++ .+.+ +......-.+|+.|+| ++.+.+. ..+...+.....|++|+|..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3467888888764 3321 0001113456777777 6665542 235566666677777777766
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.46 E-value=0.67 Score=40.09 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=6.1
Q ss_pred eeecCCCceeEEE
Q 038991 237 EVHDLQFLQTVNL 249 (287)
Q Consensus 237 ~~~~~p~L~~~~l 249 (287)
.+.++.+|+++.+
T Consensus 328 aF~~C~~L~~i~i 340 (379)
T 4h09_A 328 AFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCCCCC
T ss_pred HhhCCCCCCEEEE
Confidence 3444555554443
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=70.84 E-value=1.5 Score=37.74 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=36.7
Q ss_pred CcCCCcccEEEeceeeccccC-CCcccCCCccEEEE-EE--EeCCcchHHHHHccCCccceEEeee
Q 038991 114 IYSCRSLEVLKLDYDFDIAVP-VSGMCFPNLKFLRV-SL--QYPENQLTEKLFSSCPSIEELCLKV 175 (287)
Q Consensus 114 ~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L-~~--~~~~~~~l~~l~~~cp~Le~L~l~~ 175 (287)
...|.+|+.+.+.... ..++ .....|++|+.+.+ +. ...++ ..+.+|++|+.+.|..
T Consensus 259 F~~~~~l~~i~l~~~i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV-KTVPYLLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTCTTCCEEEECCCC-SEECTTTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCT
T ss_pred cceeehhccccccccc-eeccccccccccccccccccccccceehh----hhhcCCCCCCEEEcCc
Confidence 3457889988886542 2221 14457889999988 63 22222 2477899999998854
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=69.05 E-value=1.7 Score=37.85 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=50.8
Q ss_pred CCcCCCcccEEEeceeecccc-CCCcccCCCccEEEE-E-EEeCCcchHHHHHccCCccceEEeeeeeccCCCeeeE-EE
Q 038991 113 SIYSCRSLEVLKLDYDFDIAV-PVSGMCFPNLKFLRV-S-LQYPENQLTEKLFSSCPSIEELCLKVYLKYDGPATNF-II 188 (287)
Q Consensus 113 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L-~-~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~l-~i 188 (287)
....|.+|+.+.+... ...+ ......|.+|+.+.| + +.-.++ ..+.+|.+|+.+.+...... +..- --
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~l~~---I~~~aF~ 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLSLRK---IGANAFQ 363 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTTCCE---ECTTTBT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECccccE---ehHHHhh
Confidence 4456899999999654 2222 114558899999998 3 433332 24788999999998654110 1100 11
Q ss_pred ECCCcceEEEEEe
Q 038991 189 SSSTLKRFYWTVL 201 (287)
Q Consensus 189 ~~~~Lk~L~l~~~ 201 (287)
.+++|+.+++...
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 4678999888655
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.95 E-value=3.9 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=20.7
Q ss_pred cccCCCccEEEE--EEEeCCcchHHHHHccCCccceEEeeee
Q 038991 137 GMCFPNLKFLRV--SLQYPENQLTEKLFSSCPSIEELCLKVY 176 (287)
Q Consensus 137 ~~~~~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~l~~c 176 (287)
+.+|.+|+.+.+ .+...++. .+.+|.+|+.+.+..-
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~----aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDG----MFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTT----SSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCchheEcHH----HHhccCCccEEEEcCC
Confidence 345666666666 34433322 3566777777777653
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=47.77 E-value=11 Score=27.04 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=25.4
Q ss_pred CcccEEEeceeeccccCCC-cccCCCccEEEE-EEEeC
Q 038991 118 RSLEVLKLDYDFDIAVPVS-GMCFPNLKFLRV-SLQYP 153 (287)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L-~~~~~ 153 (287)
.+|+.|+|+++.+..++.. ...+++|+.|+| +-.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4589999999888776533 346778888887 65444
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.06 E-value=54 Score=18.84 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.7
Q ss_pred CCCchHHHHHHhcCCC
Q 038991 5 SSLLDSVLCNILSFLT 20 (287)
Q Consensus 5 s~LPd~vL~~Ils~L~ 20 (287)
..||+.|=+.+|+.||
T Consensus 10 ~~lP~~VD~eVF~~LP 25 (48)
T 2kwv_A 10 QALPEGVDQEVFKQLP 25 (48)
T ss_dssp TSSCTTCCGGGTTTSC
T ss_pred ccCCCCCCHHHHHHCc
Confidence 3444444445555544
Done!