BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038992
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WMM|A Chain A, Crystal Structure Of The Hinge Domain Of Mukb
 pdb|2WMM|B Chain B, Crystal Structure Of The Hinge Domain Of Mukb
          Length = 162

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 154 FLEGDQPLFLDSVL----LEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRR 209
            +EGD   F DSV     LE+  +  IA+R   Y     V L G   ++ +I+     R 
Sbjct: 94  LIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAERE 153

Query: 210 MMSEQL 215
           ++SE+ 
Sbjct: 154 VLSERF 159


>pdb|4FXG|A Chain A, Complement C4 In Complex With Masp-2
 pdb|4FXG|D Chain D, Complement C4 In Complex With Masp-2
 pdb|4FXK|A Chain A, Human Complement C4
          Length = 656

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 152 HIFLEGDQPLFLDSVLLEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQE-NVRRM 210
           H+FL+ DQP++            N  +R++ Y+V A+   + P    I + V+  +  R+
Sbjct: 121 HLFLQTDQPIY------------NPGQRVR-YRVFALDQKMRPSTDTITVMVENSHGLRV 167

Query: 211 MSEQLYLPST 220
             +++Y+PS+
Sbjct: 168 RKKEVYMPSS 177


>pdb|3IBP|A Chain A, The Crystal Structure Of The Dimerization Domain Of
           Escherichia Coli Structural Maintenance Of Chromosomes
           Protein Mukb
          Length = 302

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 154 FLEGDQPLFLDSVL----LEQGNITNIAERMQDYQVIAMVILLGPKLKQIQIQVQENVRR 209
            +EGD   F DSV     LE+  +  IA+R   Y     V L G   ++ +I+     R 
Sbjct: 175 LIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAERE 234

Query: 210 MMSEQL 215
           ++SE+ 
Sbjct: 235 VLSERF 240


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,940,901
Number of Sequences: 62578
Number of extensions: 257929
Number of successful extensions: 539
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)